RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZFP644 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000049606

Ensembl transcript IDs: ENSMUST00000045466.14, ENSMUST00000112695.4, ENSMUST00000112696.8, ENSMUST00000112698.8, ENSMUST00000122980.8, ENSMUST00000124263.2, ENSMUST00000127434.8, ENSMUST00000135108.2, ENSMUST00000137285.8, ENSMUST00000155495.8

Found 339 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ACATCTCCACCCTATATAAAATATATGACTACTTACTGTCTTGTCTaGAGTATTGTTTGCTCCGATGCCACTCTAATTTACGGTCCCTCA +
Preference number: 1 (lower is better)
Translates to: TSPPYIKYMTTYCLV*SIVCSDATLIYGPS
Trigger: TGAGGGACCGTAAATTAGAGTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTTATATAGGGTGGAGATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
3UTR TCA 90 bp ATCAATGCATATCCTTGGTTCAACTATATTAGCAACACCATGAAATaGAGCGGAATGGTGCTTGCATACAAACTGCTGTTTGTAAACGAC +
Preference number: 1 (lower is better)
Translates to: INAYPWFNYISNTMK*SGMVLAYKLLFVND
Trigger: GTCGTTTACAAACAGCAGTTTGTATGCAAGCACCATTCCGCTTCATTTCATGGTGTTGCTAATATAGTTGAACCAAGGATATGCATTGAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
3UTR TCA 90 bp GTGCTTGCATACAAACTGCTGTTTGTAAACGACGCTCATTCAGGATaGAAGGAACTAAGTTGTTTTTGGAAAGTGTTTAAAAGAATCATC +
Preference number: 1 (lower is better)
Translates to: VLAYKLLFVNDAHSG*KELSCFWKVFKRII
Trigger: GATGATTCTTTTAAACACTTTCCAAAAACAACTTAGTTCCTTTCATCCTGAATGAGCGTCGTTTACAAACAGCAGTTTGTATGCAAGCAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
3UTR-3UTR TCA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCGTACTCTGCCCTATTTaGGGGAACAGTCTCAAACTA +
Preference number: 2 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLVLCPI*GNSLKL
Trigger: TAGTTTGAGACTGTTCCCTCAAATAGGGCAGAGTAC...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
3UTR-3UTR TCA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCTGTAGGACCTTTAGTTaGGTAAACTCAGCCAACAAA +
Preference number: 2 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLCRTFS*VNSANK
Trigger: TTTGTTGGCTGAGTTTACTCAACTAAAGGTCCTACA...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
3UTR-3UTR GCA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACACATGACCAAGACACCTaGACCGTACTGTCCATTCCT +
Preference number: 2 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTHDQDT*TVLSIP
Trigger: AGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATG...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
3UTR-3UTR CCA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACAAAGCAGGAGGTAGCATaGACGCACCACTTCATTGTC +
Preference number: 2 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTKQEVA*THHFIV
Trigger: GACAATGAAGTGGTGCGTCCATGCTACCTCCTGCTT...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
3UTR-3UTR CCA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACAAGCAGGAGGTAGCATaGACGCACCACTTCATTGTC +
Preference number: 2 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYKQEVA*THHFIV
Trigger: GACAATGAAGTGGTGCGTCCATGCTACCTCCTGCTT...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
3UTR-3UTR TCA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACACATCACAGTTTATCATaGCCAAGACACCTGCACCGT +
Preference number: 2 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTHHSLS*PRHLHR
Trigger: ACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATG...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
3UTR-3UTR TCA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACAAGCAACACCATGAAATaGAGCGGAATGGTGCTTGCA +
Preference number: 2 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTSNTMK*SGMVLA
Trigger: TGCAAGCACCATTCCGCTTCATTTCATGGTGTTGCT...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
3UTR-3UTR TCA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACAGCAACACCATGAAATaGAGCGGAATGGTGCTTGCA +
Preference number: 2 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYSNTMK*SGMVLA
Trigger: TGCAAGCACCATTCCGCTTCATTTCATGGTGTTGCT...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
3UTR-3UTR TCA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACGTACTCTGCCCTATTTaGGGGAACAGTCTCAAACTA +
Preference number: 2 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYVLCPI*GNSLKL
Trigger: TAGTTTGAGACTGTTCCCTCAAATAGGGCAGAGTAC...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
3UTR-3UTR GCA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACAAGCGGAATGGTGCTTaGATACAAACTGCTGTTTGT +
Preference number: 2 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYKRNGA*IQTAVC
Trigger: ACAAACAGCAGTTTGTATGCAAGCACCATTCCGCTT...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
3UTR CAA 90 bp CTATATAAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTaGCTCCGATGCCACTCTAATTTACGGTCCCTCATTCTTCCTACT +
Preference number: 2 (lower is better)
Translates to: LYKIYDYLLSCLKYC*LRCHSNLRSLILPT
Trigger: AGTAGGAAGAATGAGGGACCGTAAATTAGAGTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTTATATAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
3UTR-3UTR TCA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACTGTAGGACCTTTAGTTaGGTAAACTCAGCCAACAAA +
Preference number: 2 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYCRTFS*VNSANK
Trigger: TTTGTTGGCTGAGTTTACTCAACTAAAGGTCCTACA...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
3UTR-3UTR TCA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACATGTAGGACCTTTAGTTaGGTAAACTCAGCCAACAAA +
Preference number: 2 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTCRTFS*VNSANK
Trigger: TTTGTTGGCTGAGTTTACTCAACTAAAGGTCCTACA...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
3UTR-3UTR TCA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACGACGCTCATTCAGGATaGAAGGAACTAAGTTGTTTT +
Preference number: 2 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYDAHSG*KELSCF
Trigger: AAAACAACTTAGTTCCTTTCATCCTGAATGAGCGTC...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
3UTR-3UTR CCA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACTTATTTTTCTATGTGTaGGGAAAAACCAGAGCCTTG +
Preference number: 2 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYLFFYV*GKTRAL
Trigger: CAAGGCTCTGGTTTTTCCCCACACATAGAAAAATAA...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
3UTR-3UTR CCA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACATTATTTTTCTATGTGTaGGGAAAAACCAGAGCCTTG +
Preference number: 2 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTLFFYV*GKTRAL
Trigger: CAAGGCTCTGGTTTTTCCCCACACATAGAAAAATAA...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
3UTR-3UTR CAA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCAGTACTCTGCCCTATTaGAGGGAACAGTCTCAAACT +
Preference number: 3 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLSTLPY*REQSQT
Trigger: AGTTTGAGACTGTTCCCTCAAATAGGGCAGAGTACT...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
3UTR-3UTR CAA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACAGAAGCGGAATGGTGCTaGCATACAAACTGCTGTTTG +
Preference number: 3 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTEAEWC*HTNCCL
Trigger: CAAACAGCAGTTTGTATGCAAGCACCATTCCGCTTC...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
3UTR-3UTR CAA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACGAAGCGGAATGGTGCTaGCATACAAACTGCTGTTTG +
Preference number: 3 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYEAEWC*HTNCCL
Trigger: CAAACAGCAGTTTGTATGCAAGCACCATTCCGCTTC...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
3UTR TCA 72 bp ATGCATATCCTTGGTTCAACTATATTAGCAACACCATaGAATGAAGCGGAATGGTGCTTGCATACAAACTGC +
Preference number: 3 (lower is better)
Translates to: MHILGSTILATP*NEAEWCLHTNC
Trigger: GCAGTTTGTATGCAAGCACCATTCCGCTTCATTTCATGGTGTTGCTAATATAGTTGAACCAAGGATATGCAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
3UTR GCA 72 bp AAAAGAATCATCACAGTTTATCATGACCAAGACACCTaGACCGTACTGTCCATTCCTCACAGCACATTTATT +
Preference number: 3 (lower is better)
Translates to: KRIITVYHDQDT*TVLSIPHSTFI
Trigger: AATAAATGTGCTGTGAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTCTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
3UTR-3UTR CAA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACAGTACTCTGCCCTATTaGAGGGAACAGTCTCAAACT +
Preference number: 3 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYSTLPY*REQSQT
Trigger: AGTTTGAGACTGTTCCCTCAAATAGGGCAGAGTACT...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
3UTR TCA 72 bp TACAAACTGCTGTTTGTAAACGACGCTCATTCAGGATaGAAGGAACTAAGTTGTTTTTGGAAAGTGTTTAAA +
Preference number: 3 (lower is better)
Translates to: YKLLFVNDAHSG*KELSCFWKVFK
Trigger: TTTAAACACTTTCCAAAAACAACTTAGTTCCTTTCATCCTGAATGAGCGTCGTTTACAAACAGCAGTTTGTA
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCGTACCAAACACACACTaGGGGCACTGGAGTCGAGCA +
Preference number: 4 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLVPNTH*GHWSRA
Trigger: TGCTCGACTCCAGTGCCCTCAGTGTGTGTTTGGTAC...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCGAACAGCAGGAGTGCTaGCAGGGAGAAACAAAGCAG +
Preference number: 4 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLEQQEC*QGETKQ
Trigger: CTGCTTTGTTTCTCCCTGCCAGCACTCCTGCTGTTC...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR GCA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCCAGCTGATGATCAGCTaGTGCCTTCAAAGTGGAGCA +
Preference number: 4 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLQLMIS*CLQSGA
Trigger: TGCTCCACTTTGAAGGCAGCAGCTGATCATCAGCTG...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCAGATGTCCTCGGACATaGTTTGACAACCCAACACCT +
Preference number: 4 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLRCPRT*FDNPTP
Trigger: AGGTGTTGGGTTGTCAAATCATGTCCGAGGACATCT...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCGGCTATTTGTTCTGGTaGTACAACATGACGGGCTTC +
Preference number: 4 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLGYLFW*YNMTGF
Trigger: GAAGCCCGTCATGTTGTATCACCAGAACAAATAGCC...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR GCA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCCTGATGATCAGCTGCTaGCTTCAAAGTGGAGCAAGA +
Preference number: 4 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLLMISC*LQSGAR
Trigger: TCTTGCTCCACTTTGAAGGCAGCAGCTGATCATCAG...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR GCA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCCTCATTCTCCGTCACTaGCATGAAGTTACACTCCTC +
Preference number: 4 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLLILRH*HEVTLL
Trigger: GAGGAGTGTAACTTCATGGCAGTGACGGAGAATGAG...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCATCAGTGTAAGAGACTaGTTCTTTCTCCCACTGGGC +
Preference number: 4 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLISVRD*FFLPLG
Trigger: GCCCAGTGGGAGAAAGAACCAGTCTCTTACACTGAT...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCGCCAGCTCCAGTCCGTaGAAGATTAGCGTTTACAAT +
Preference number: 4 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLASSSP*KISVYN
Trigger: ATTGTAAACGCTAATCTTCCACGGACTGGAGCTGGC...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCAACCTGAAGAATTTTTaGTTTTCCAGGTGCACGGCC +
Preference number: 4 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLNLKNF*FSRCTA
Trigger: GGCCGTGCACCTGGAAAATCAAAAATTCTTCAGGTT...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCTGTACAGGGGTAGAATaGTGGCTCTTCAGTACTGAA +
Preference number: 4 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLCTGVE*WLFSTE
Trigger: TTCAGTACTGAAGAGCCATCATTCTACCCCTGTACA...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp TTGAGTAAACTCAGCCAACAAAACTTAGTAAACCTTAAGAACACATCTCCACCCGTACCAAACACACACTaGGGGCACTGGAGTCGAGCA +
Preference number: 4 (lower is better)
Translates to: LSKLSQQNLVNLKNTSPPVPNTH*GHWSRA
Trigger: TGCTCGACTCCAGTGCCCTCAGTGTGTGTTTGGTAC...GGGTGGAGATGTGTTCTTAAGGTTTACTAAGTTTTGTTGGCTGAGTTTACTCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCCTTACAATCTATGGCTaGGTGCACAGTCAAGTCCAT +
Preference number: 4 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLLTIYG*VHSQVH
Trigger: ATGGACTTGACTGTGCACTCAGCCATAGATTGTAAG...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR GCA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCCACCAGATTGGGCAATaGTTTTCCGGGCTTTTTGTA +
Preference number: 4 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLHQIGQ*FSGLFV
Trigger: TACAAAAAGCCCGGAAAAGCATTGCCCAATCTGGTG...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR GCA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCCTAGGCCACAAAACCTaGATCGGAGAATGTAAACCT +
Preference number: 4 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLLGHKT*IGECKP
Trigger: AGGTTTACATTCTCCGATGCAGGTTTTGTGGCCTAG...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCTATTGGAAGTCTTTGTaGAGGAGGAGCATGAGACTG +
Preference number: 4 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLYWKSL*RRSMRL
Trigger: CAGTCTCATGCTCCTCCTCCACAAAGACTTCCAATA...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCGAATTTACACCAGATTaGGCAATGCTTTTCCGGGCT +
Preference number: 4 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLEFTPD*AMLFRA
Trigger: AGCCCGGAAAAGCATTGCCCAATCTGGTGTAAATTC...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp TTGAGTAAACTCAGCCAACAAAACTTAGTAAACCTTAAGAACACATCTCCACCCTCTCCGTCACTGCCATaGAGTTACACTCCTCACAGC +
Preference number: 4 (lower is better)
Translates to: LSKLSQQNLVNLKNTSPPSPSLP*SYTPHS
Trigger: GCTGTGAGGAGTGTAACTTCATGGCAGTGACGGAGA...GGGTGGAGATGTGTTCTTAAGGTTTACTAAGTTTTGTTGGCTGAGTTTACTCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCAGAGCTTTCCTTCTTTaGGGCCTTAGCTACTCTTTT +
Preference number: 4 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLRAFLL*GLSYSF
Trigger: AAAAGAGTAGCTAAGGCCTCAAAGAAGGAAAGCTCT...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACCCTGAGGAGAGTTTCTaGGCTACAAACGGTCTGGGG +
Preference number: 4 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHPEESF*ATNGLG
Trigger: CCCCAGACCGTTTGTAGCTCAGAAACTCTCCTCAGG...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR GCA 90 bp TTGAGTAAACTCAGCCAACAAAACTTAGTAAACCTTAAGAACACATCTCCACCCGGAGTCGAGCACTTCTaGCTTCATCCTGGAGCTCTT +
Preference number: 4 (lower is better)
Translates to: LSKLSQQNLVNLKNTSPPGVEHF*LHPGAL
Trigger: AAGAGCTCCAGGATGAAGGCAGAAGTGCTCGACTCC...GGGTGGAGATGTGTTCTTAAGGTTTACTAAGTTTTGTTGGCTGAGTTTACTCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp TTGAGTAAACTCAGCCAACAAAACTTAGTAAACCTTAAGAACACATCTCCACCCGAACAGCAGGAGTGCTaGCAGGGAGAAACAAAGCAG +
Preference number: 4 (lower is better)
Translates to: LSKLSQQNLVNLKNTSPPEQQEC*QGETKQ
Trigger: CTGCTTTGTTTCTCCCTGCCAGCACTCCTGCTGTTC...GGGTGGAGATGTGTTCTTAAGGTTTACTAAGTTTTGTTGGCTGAGTTTACTCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCGTCTTTCTCGTTTTCTaGCCTTTTGGTGTCTGCATT +
Preference number: 4 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLVFLVF*PFGVCI
Trigger: AATGCAGACACCAAAAGGCCAGAAAACGAGAAAGAC...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCCATGTTATTCCCTACTaGATTCTGAACATCACAACC +
Preference number: 4 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLHVIPY*ILNITT
Trigger: GGTTGTGATGTTCAGAATTCAGTAGGGAATAACATG...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACAGTACCAAACACACACTaGGGGCACTGGAGTCGAGCA +
Preference number: 4 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTVPNTH*GHWSRA
Trigger: TGCTCGACTCCAGTGCCCTCAGTGTGTGTTTGGTAC...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACACCTGAGGAGAGTTTCTaGGCTACAAACGGTCTGGGG +
Preference number: 4 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTPEESF*ATNGLG
Trigger: CCCCAGACCGTTTGTAGCTCAGAAACTCTCCTCAGG...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCTACCTTCATTCATATTaGAAGTCTTTGTGGAGGAGG +
Preference number: 4 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLYLHSY*KSLWRR
Trigger: CCTCCTCCACAAAGACTTCCAATATGAATGAAGGTA...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp TTGAGTAAACTCAGCCAACAAAACTTAGTAAACCTTAAGAACACATCTCCACCCCTGCTGCCTTCAAAGTaGAGCAAGACTCTGCTGCTA +
Preference number: 4 (lower is better)
Translates to: LSKLSQQNLVNLKNTSPPLLPSK*SKTLLL
Trigger: TAGCAGCAGAGTCTTGCTCCACTTTGAAGGCAGCAG...GGGTGGAGATGTGTTCTTAAGGTTTACTAAGTTTTGTTGGCTGAGTTTACTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCTACATCATATGCCTGTaGAGATGCTTTTTCTCCCTA +
Preference number: 4 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLYIICL*RCFFSL
Trigger: TAGGGAGAAAAAGCATCTCCACAGGCATATGATGTA...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACCTGTCTCCAGGGCCCTaGCCCTCTATCTTGCTTTTA +
Preference number: 4 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHLSPGP*PSILLL
Trigger: TAAAAGCAAGATAGAGGGCCAGGGCCCTGGAGACAG...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCATTCAGAACACAGATTaGAGATTTGTGAGCATCCCA +
Preference number: 4 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLIQNTD*RFVSIP
Trigger: TGGGATGCTCACAAATCTCCAATCTGTGTTCTGAAT...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCGTCTTTAGGCCATTGTaGTATTCATCAAGAGGTAAG +
Preference number: 4 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLVFRPL*YSSRGK
Trigger: CTTACCTCTTGATGAATACCACAATGGCCTAAAGAC...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCCAATCTTTTGGTTTATaGACTCCACTGTCTTTCTCA +
Preference number: 4 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLQSFGL*TPLSFS
Trigger: TGAGAAAGACAGTGGAGTTCATAAACCAAAAGATTG...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCTTCCCTACTGAATTCTaGACATCACAACCAACTAAA +
Preference number: 4 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLFPTEF*TSQPTK
Trigger: TTTAGTTGGTTGTGATGTTCAGAATTCAGTAGGGAA...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCGTTTGTATCATTTTCTaGCCTAAATTCGTCTGTACC +
Preference number: 4 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLVCIIF*PKFVCT
Trigger: GGTACAGACGAATTTAGGTCAGAAAATGATACAAAC...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCCTAGTCATAAGAAACTaGATGAACTCTTTTTGGGGA +
Preference number: 4 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLLVIRN*MNSFWG
Trigger: TCCCCAAAAAGAGTTCATTCAGTTTCTTATGACTAG...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp TTGAGTAAACTCAGCCAACAAAACTTAGTAAACCTTAAGAACACATCTCCACCCACTGAAAGCAACAGGTaGCTCAGGATCACTCTCTTC +
Preference number: 4 (lower is better)
Translates to: LSKLSQQNLVNLKNTSPPTESNR*LRITLF
Trigger: GAAGAGAGTGATCCTGAGTCACCTGTTGCTTTCAGT...GGGTGGAGATGTGTTCTTAAGGTTTACTAAGTTTTGTTGGCTGAGTTTACTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACTCTCCGTCACTGCCATaGAGTTACACTCCTCACAGC +
Preference number: 4 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYSPSLP*SYTPHS
Trigger: GCTGTGAGGAGTGTAACTTCATGGCAGTGACGGAGA...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp TTGAGTAAACTCAGCCAACAAAACTTAGTAAACCTTAAGAACACATCTCCACCCCAACCACCACAGAGCTaGCAAGTATGTTCGGAAGTA +
Preference number: 4 (lower is better)
Translates to: LSKLSQQNLVNLKNTSPPQPPQS*QVCSEV
Trigger: TACTTCCGAACATACTTGTCAGCTCTGTGGTGGTTG...GGGTGGAGATGTGTTCTTAAGGTTTACTAAGTTTTGTTGGCTGAGTTTACTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp TTGAGTAAACTCAGCCAACAAAACTTAGTAAACCTTAAGAACACATCTCCACCCTTAATCCAGTCTTCCTaGACAGACAATGGTCCCCGA +
Preference number: 4 (lower is better)
Translates to: LSKLSQQNLVNLKNTSPPLIQSS*TDNGPR
Trigger: TCGGGGACCATTGTCTGTTCAGGAAGACTGGATTAA...GGGTGGAGATGTGTTCTTAAGGTTTACTAAGTTTTGTTGGCTGAGTTTACTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR GCA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACCAGCTGATGATCAGCTaGTGCCTTCAAAGTGGAGCA +
Preference number: 4 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHQLMIS*CLQSGA
Trigger: TGCTCCACTTTGAAGGCAGCAGCTGATCATCAGCTG...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR GCA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACGGAGTCGAGCACTTCTaGCTTCATCCTGGAGCTCTT +
Preference number: 4 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYGVEHF*LHPGAL
Trigger: AAGAGCTCCAGGATGAAGGCAGAAGTGCTCGACTCC...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCTGTCTGACAATCTTTTaGTTTATGAACTCCACTGTC +
Preference number: 4 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLCLTIF*FMNSTV
Trigger: GACAGTGGAGTTCATAAACCAAAAGATTGTCAGACA...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCTGTCTCCAGGGCCCTaGCCCTCTATCTTGCTTTTA +
Preference number: 4 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYLSPGP*PSILLL
Trigger: TAAAAGCAAGATAGAGGGCCAGGGCCCTGGAGACAG...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACACTGTCTCCAGGGCCCTaGCCCTCTATCTTGCTTTTA +
Preference number: 4 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTLSPGP*PSILLL
Trigger: TAAAAGCAAGATAGAGGGCCAGGGCCCTGGAGACAG...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACACTGAAAGCAACAGGTaGCTCAGGATCACTCTCTTC +
Preference number: 4 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHTESNR*LRITLF
Trigger: GAAGAGAGTGATCCTGAGTCACCTGTTGCTTTCAGT...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp TTGAGTAAACTCAGCCAACAAAACTTAGTAAACCTTAAGAACACATCTCCACCCCAGAATACTTCTGGCTaGAGTAGTGAAGGGACACAT +
Preference number: 4 (lower is better)
Translates to: LSKLSQQNLVNLKNTSPPQNTSG*SSEGTH
Trigger: ATGTGTCCCTTCACTACTTCAGCCAGAAGTATTCTG...GGGTGGAGATGTGTTCTTAAGGTTTACTAAGTTTTGTTGGCTGAGTTTACTCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACTCCTCGGACATGATTTaGCAACCCAACACCTGTTTC +
Preference number: 4 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHSSDMI*QPNTCF
Trigger: GAAACAGGTGTTGGGTTGTCAAATCATGTCCGAGGA...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACGGCTATTTGTTCTGGTaGTACAACATGACGGGCTTC +
Preference number: 4 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHGYLFW*YNMTGF
Trigger: GAAGCCCGTCATGTTGTATCACCAGAACAAATAGCC...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACCGTTGCCAGTTCTTTTaGAGTGCTGCATCTTGTCAC +
Preference number: 4 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHRCQFF*SAASCH
Trigger: GTGACAAGATGCAGCACTTCAAAAGAACTGGCAACG...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACCAACCACCACAGAGCTaGCAAGTATGTTCGGAAGTA +
Preference number: 4 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHQPPQS*QVCSEV
Trigger: TACTTCCGAACATACTTGTCAGCTCTGTGGTGGTTG...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACTGGTTATGGGTCTTGTaGGGAGAGACTGCAGAATTC +
Preference number: 4 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHWLWVL*GETAEF
Trigger: GAATTCTGCAGTCTCTCCTCACAAGACCCATAACCA...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp TTGAGTAAACTCAGCCAACAAAACTTAGTAAACCTTAAGAACACATCTCCACCCCTTACAATCTATGGCTaGGTGCACAGTCAAGTCCAT +
Preference number: 4 (lower is better)
Translates to: LSKLSQQNLVNLKNTSPPLTIYG*VHSQVH
Trigger: ATGGACTTGACTGTGCACTCAGCCATAGATTGTAAG...GGGTGGAGATGTGTTCTTAAGGTTTACTAAGTTTTGTTGGCTGAGTTTACTCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACACCTCGTCAGCACCATaGGGCAACGTTAGCATTTTC +
Preference number: 4 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYTSSAP*GNVSIF
Trigger: GAAAATGCTAACGTTGCCTCATGGTGCTGACGAGGT...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACAACCTCGTCAGCACCATaGGGCAACGTTAGCATTTTC +
Preference number: 4 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTTSSAP*GNVSIF
Trigger: GAAAATGCTAACGTTGCCTCATGGTGCTGACGAGGT...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACTTAATCCAGTCTTCCTaGACAGACAATGGTCCCCGA +
Preference number: 4 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHLIQSS*TDNGPR
Trigger: TCGGGGACCATTGTCTGTTCAGGAAGACTGGATTAA...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR GCA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAGCTGATGATCAGCTaGTGCCTTCAAAGTGGAGCA +
Preference number: 4 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYQLMIS*CLQSGA
Trigger: TGCTCCACTTTGAAGGCAGCAGCTGATCATCAGCTG...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR GCA 90 bp TTGAGTAAACTCAGCCAACAAAACTTAGTAAACCTTAAGAACACATCTCCACCCTTCATAGCTCAATCCTaGTCTGTGAAGATGTCCTCG +
Preference number: 4 (lower is better)
Translates to: LSKLSQQNLVNLKNTSPPFIAQS*SVKMSS
Trigger: CGAGGACATCTTCACAGAGCAGGATTGAGCTATGAA...GGGTGGAGATGTGTTCTTAAGGTTTACTAAGTTTTGTTGGCTGAGTTTACTCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR GCA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACCTTGTGAGGAGAGACTaGAGAATTCCTTTCTTCGCC +
Preference number: 4 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHLVRRD*RIPFFA
Trigger: GGCGAAGAAAGGAATTCTGCAGTCTCTCCTCACAAG...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCTGCTGCCTTCAAAGTaGAGCAAGACTCTGCTGCTA +
Preference number: 4 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYLLPSK*SKTLLL
Trigger: TAGCAGCAGAGTCTTGCTCCACTTTGAAGGCAGCAG...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp TTGAGTAAACTCAGCCAACAAAACTTAGTAAACCTTAAGAACACATCTCCACCCTTCTCTACAAGCATATaGCCTGGGGACATTAAGGTG +
Preference number: 4 (lower is better)
Translates to: LSKLSQQNLVNLKNTSPPFSTSI*PGDIKV
Trigger: CACCTTAATGTCCCCAGGCCATATGCTTGTAGAGAA...GGGTGGAGATGTGTTCTTAAGGTTTACTAAGTTTTGTTGGCTGAGTTTACTCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp TTGAGTAAACTCAGCCAACAAAACTTAGTAAACCTTAAGAACACATCTCCACCCGAATTTACACCAGATTaGGCAATGCTTTTCCGGGCT +
Preference number: 4 (lower is better)
Translates to: LSKLSQQNLVNLKNTSPPEFTPD*AMLFRA
Trigger: AGCCCGGAAAAGCATTGCCCAATCTGGTGTAAATTC...GGGTGGAGATGTGTTCTTAAGGTTTACTAAGTTTTGTTGGCTGAGTTTACTCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACAACCTGAAGAATTTTTaGTTTTCCAGGTGCACGGCC +
Preference number: 4 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHNLKNF*FSRCTA
Trigger: GGCCGTGCACCTGGAAAATCAAAAATTCTTCAGGTT...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACTGTACAGGGGTAGAATaGTGGCTCTTCAGTACTGAA +
Preference number: 4 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHCTGVE*WLFSTE
Trigger: TTCAGTACTGAAGAGCCATCATTCTACCCCTGTACA...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp TTGAGTAAACTCAGCCAACAAAACTTAGTAAACCTTAAGAACACATCTCCACCCTCTCTGAGTTACTTCTaGACTCACAACAGGACACTT +
Preference number: 4 (lower is better)
Translates to: LSKLSQQNLVNLKNTSPPSLSYF*THNRTL
Trigger: AAGTGTCCTGTTGTGAGTTCAGAAGTAACTCAGAGA...GGGTGGAGATGTGTTCTTAAGGTTTACTAAGTTTTGTTGGCTGAGTTTACTCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp TTGAGTAAACTCAGCCAACAAAACTTAGTAAACCTTAAGAACACATCTCCACCCAACAGAACTATGCTTTaGCAAAGGCGTTTCTGGGTT +
Preference number: 4 (lower is better)
Translates to: LSKLSQQNLVNLKNTSPPNRTML*QRRFWV
Trigger: AACCCAGAAACGCCTTTGTCAAAGCATAGTTCTGTT...GGGTGGAGATGTGTTCTTAAGGTTTACTAAGTTTTGTTGGCTGAGTTTACTCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp TTGAGTAAACTCAGCCAACAAAACTTAGTAAACCTTAAGAACACATCTCCACCCTGGGCAATAAGGACATaGCTTCTTCTCAAGAGACAA +
Preference number: 4 (lower is better)
Translates to: LSKLSQQNLVNLKNTSPPWAIRT*LLLKRQ
Trigger: TTGTCTCTTGAGAAGAAGTCATGTCCTTATTGCCCA...GGGTGGAGATGTGTTCTTAAGGTTTACTAAGTTTTGTTGGCTGAGTTTACTCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACATCCTCGGACATGATTTaGCAACCCAACACCTGTTTC +
Preference number: 4 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTSSDMI*QPNTCF
Trigger: GAAACAGGTGTTGGGTTGTCAAATCATGTCCGAGGA...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACAGATGTCCTCGGACATaGTTTGACAACCCAACACCT +
Preference number: 4 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYRCPRT*FDNPTP
Trigger: AGGTGTTGGGTTGTCAAATCATGTCCGAGGACATCT...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACACGTTGCCAGTTCTTTTaGAGTGCTGCATCTTGTCAC +
Preference number: 4 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTRCQFF*SAASCH
Trigger: GTGACAAGATGCAGCACTTCAAAAGAACTGGCAACG...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACTGGTTATGGGTCTTGTaGGGAGAGACTGCAGAATTC +
Preference number: 4 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYWLWVL*GETAEF
Trigger: GAATTCTGCAGTCTCTCCTCACAAGACCCATAACCA...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACCTTACAATCTATGGCTaGGTGCACAGTCAAGTCCAT +
Preference number: 4 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHLTIYG*VHSQVH
Trigger: ATGGACTTGACTGTGCACTCAGCCATAGATTGTAAG...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACTTAATCCAGTCTTCCTaGACAGACAATGGTCCCCGA +
Preference number: 4 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYLIQSS*TDNGPR
Trigger: TCGGGGACCATTGTCTGTTCAGGAAGACTGGATTAA...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR GCA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACACTGATGATCAGCTGCTaGCTTCAAAGTGGAGCAAGA +
Preference number: 4 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTLMISC*LQSGAR
Trigger: TCTTGCTCCACTTTGAAGGCAGCAGCTGATCATCAG...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR GCA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACACTCATTCTCCGTCACTaGCATGAAGTTACACTCCTC +
Preference number: 4 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTLILRH*HEVTLL
Trigger: GAGGAGTGTAACTTCATGGCAGTGACGGAGAATGAG...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR GCA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCTCATTCTCCGTCACTaGCATGAAGTTACACTCCTC +
Preference number: 4 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYLILRH*HEVTLL
Trigger: GAGGAGTGTAACTTCATGGCAGTGACGGAGAATGAG...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR GCA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACCACCAGATTGGGCAATaGTTTTCCGGGCTTTTTGTA +
Preference number: 4 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHHQIGQ*FSGLFV
Trigger: TACAAAAAGCCCGGAAAAGCATTGCCCAATCTGGTG...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR GCA 90 bp TTGAGTAAACTCAGCCAACAAAACTTAGTAAACCTTAAGAACACATCTCCACCCGTTCTTTTGAAGTGCTaGATCTTGTCACTTGTGGCT +
Preference number: 4 (lower is better)
Translates to: LSKLSQQNLVNLKNTSPPVLLKC*ILSLVA
Trigger: AGCCACAAGTGACAAGATGCAGCACTTCAAAAGAAC...GGGTGGAGATGTGTTCTTAAGGTTTACTAAGTTTTGTTGGCTGAGTTTACTCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR GCA 90 bp TTGAGTAAACTCAGCCAACAAAACTTAGTAAACCTTAAGAACACATCTCCACCCCCAGTTCTTTTGAAGTaGTGCATCTTGTCACTTGTG +
Preference number: 4 (lower is better)
Translates to: LSKLSQQNLVNLKNTSPPPVLLK*CILSLV
Trigger: CACAAGTGACAAGATGCAGCACTTCAAAAGAACTGG...GGGTGGAGATGTGTTCTTAAGGTTTACTAAGTTTTGTTGGCTGAGTTTACTCAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR GCA 90 bp TTGAGTAAACTCAGCCAACAAAACTTAGTAAACCTTAAGAACACATCTCCACCCCACTCACTTAAGAAATaGAGCCCTTCTTCCTCTGAT +
Preference number: 4 (lower is better)
Translates to: LSKLSQQNLVNLKNTSPPHSLKK*SPSSSD
Trigger: ATCAGAGGAAGAAGGGCTGCATTTCTTAAGTGAGTG...GGGTGGAGATGTGTTCTTAAGGTTTACTAAGTTTTGTTGGCTGAGTTTACTCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR GCA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCTTGTGAGGAGAGACTaGAGAATTCCTTTCTTCGCC +
Preference number: 4 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYLVRRD*RIPFFA
Trigger: GGCGAAGAAAGGAATTCTGCAGTCTCTCCTCACAAG...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR GCA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACCTAGGCCACAAAACCTaGATCGGAGAATGTAAACCT +
Preference number: 4 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHLGHKT*IGECKP
Trigger: AGGTTTACATTCTCCGATGCAGGTTTTGTGGCCTAG...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACTATTGGAAGTCTTTGTaGAGGAGGAGCATGAGACTG +
Preference number: 4 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHYWKSL*RRSMRL
Trigger: CAGTCTCATGCTCCTCCTCCACAAAGACTTCCAATA...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACTTCTCTACAAGCATATaGCCTGGGGACATTAAGGTG +
Preference number: 4 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHFSTSI*PGDIKV
Trigger: CACCTTAATGTCCCCAGGCCATATGCTTGTAGAGAA...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp TTGAGTAAACTCAGCCAACAAAACTTAGTAAACCTTAAGAACACATCTCCACCCGTCTTTCTCGTTTTCTaGCCTTTTGGTGTCTGCATT +
Preference number: 4 (lower is better)
Translates to: LSKLSQQNLVNLKNTSPPVFLVF*PFGVCI
Trigger: AATGCAGACACCAAAAGGCCAGAAAACGAGAAAGAC...GGGTGGAGATGTGTTCTTAAGGTTTACTAAGTTTTGTTGGCTGAGTTTACTCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACGGTTCTTTCTCCCACTaGGCAGTTCAGGCTTTCTTT +
Preference number: 4 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYGSFSH*AVQAFF
Trigger: AAAGAAAGCCTGAACTGCCCAGTGGGAGAAAGAACC...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACATCAGTGTAAGAGACTaGTTCTTTCTCCCACTGGGC +
Preference number: 4 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYISVRD*FFLPLG
Trigger: GCCCAGTGGGAGAAAGAACCAGTCTCTTACACTGAT...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACAATCAGTGTAAGAGACTaGTTCTTTCTCCCACTGGGC +
Preference number: 4 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTISVRD*FFLPLG
Trigger: GCCCAGTGGGAGAAAGAACCAGTCTCTTACACTGAT...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACAGCCAGCTCCAGTCCGTaGAAGATTAGCGTTTACAAT +
Preference number: 4 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTASSSP*KISVYN
Trigger: ATTGTAAACGCTAATCTTCCACGGACTGGAGCTGGC...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACGCCAGCTCCAGTCCGTaGAAGATTAGCGTTTACAAT +
Preference number: 4 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYASSSP*KISVYN
Trigger: ATTGTAAACGCTAATCTTCCACGGACTGGAGCTGGC...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp TTGAGTAAACTCAGCCAACAAAACTTAGTAAACCTTAAGAACACATCTCCACCCCATGTTATTCCCTACTaGATTCTGAACATCACAACC +
Preference number: 4 (lower is better)
Translates to: LSKLSQQNLVNLKNTSPPHVIPY*ILNITT
Trigger: GGTTGTGATGTTCAGAATTCAGTAGGGAATAACATG...GGGTGGAGATGTGTTCTTAAGGTTTACTAAGTTTTGTTGGCTGAGTTTACTCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACAAACCTGAAGAATTTTTaGTTTTCCAGGTGCACGGCC +
Preference number: 4 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTNLKNF*FSRCTA
Trigger: GGCCGTGCACCTGGAAAATCAAAAATTCTTCAGGTT...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACGCGAGTATGAACAGGTaGATTATCCTCTCCACATTT +
Preference number: 4 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHASMNR*IILSTF
Trigger: AAATGTGGAGAGGATAATTCACCTGTTCATACTCGC...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACTGTACAGGGGTAGAATaGTGGCTCTTCAGTACTGAA +
Preference number: 4 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYCTGVE*WLFSTE
Trigger: TTCAGTACTGAAGAGCCATCATTCTACCCCTGTACA...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACTCTCTGAGTTACTTCTaGACTCACAACAGGACACTT +
Preference number: 4 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHSLSYF*THNRTL
Trigger: AAGTGTCCTGTTGTGAGTTCAGAAGTAACTCAGAGA...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAGAATACTTCTGGCTaGAGTAGTGAAGGGACACAT +
Preference number: 4 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYQNTSG*SSEGTH
Trigger: ATGTGTCCCTTCACTACTTCAGCCAGAAGTATTCTG...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACTTGGTGTCTGCATTATaGGGGTCTGATTTTCTGATC +
Preference number: 4 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHLVSAL*GSDFLI
Trigger: GATCAGAAAATCAGACCCTCATAATGCAGACACCAA...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000045466.14
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp TTGAGTAAACTCAGCCAACAAAACTTAGTAAACCTTAAGAACACATCTCCACCCCAGATTGGAGATTTGTaGGCATCCCATTTAGTTTTC +
Preference number: 4 (lower is better)
Translates to: LSKLSQQNLVNLKNTSPPQIGDL*ASHLVF
Trigger: GAAAACTAAATGGGATGCTCACAAATCTCCAATCTG...GGGTGGAGATGTGTTCTTAAGGTTTACTAAGTTTTGTTGGCTGAGTTTACTCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp TTGAGTAAACTCAGCCAACAAAACTTAGTAAACCTTAAGAACACATCTCCACCCTTAGCGTTTACAATGTaGCGCTGTAAGTGCTTAATC +
Preference number: 4 (lower is better)
Translates to: LSKLSQQNLVNLKNTSPPLAFTM*RCKCLI
Trigger: GATTAAGCACTTACAGCGTCACATTGTAAACGCTAA...GGGTGGAGATGTGTTCTTAAGGTTTACTAAGTTTTGTTGGCTGAGTTTACTCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR GCA 90 bp TTGAGTAAACTCAGCCAACAAAACTTAGTAAACCTTAAGAACACATCTCCACCCAACTTGGTGTTGACTTaGTTTTTGTGGTGTAGACAG +
Preference number: 4 (lower is better)
Translates to: LSKLSQQNLVNLKNTSPPNLVLT*FLWCRQ
Trigger: CTGTCTACACCACAAAAAGCAAGTCAACACCAAGTT...GGGTGGAGATGTGTTCTTAAGGTTTACTAAGTTTTGTTGGCTGAGTTTACTCAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR GCA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACACACCAGATTGGGCAATaGTTTTCCGGGCTTTTTGTA +
Preference number: 4 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTHQIGQ*FSGLFV
Trigger: TACAAAAAGCCCGGAAAAGCATTGCCCAATCTGGTG...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR GCA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACTTCATAGCTCAATCCTaGTCTGTGAAGATGTCCTCG +
Preference number: 4 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYFIAQS*SVKMSS
Trigger: CGAGGACATCTTCACAGAGCAGGATTGAGCTATGAA...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR GCA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACGTTCTTTTGAAGTGCTaGATCTTGTCACTTGTGGCT +
Preference number: 4 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHVLLKC*ILSLVA
Trigger: AGCCACAAGTGACAAGATGCAGCACTTCAAAAGAAC...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR GCA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACCCAGTTCTTTTGAAGTaGTGCATCTTGTCACTTGTG +
Preference number: 4 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHPVLLK*CILSLV
Trigger: CACAAGTGACAAGATGCAGCACTTCAAAAGAACTGG...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR GCA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACCACTCACTTAAGAAATaGAGCCCTTCTTCCTCTGAT +
Preference number: 4 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHHSLKK*SPSSSD
Trigger: ATCAGAGGAAGAAGGGCTGCATTTCTTAAGTGAGTG...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR GCA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACACTAGGCCACAAAACCTaGATCGGAGAATGTAAACCT +
Preference number: 4 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTLGHKT*IGECKP
Trigger: AGGTTTACATTCTCCGATGCAGGTTTTGTGGCCTAG...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACATATTGGAAGTCTTTGTaGAGGAGGAGCATGAGACTG +
Preference number: 4 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTYWKSL*RRSMRL
Trigger: CAGTCTCATGCTCCTCCTCCACAAAGACTTCCAATA...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp TTGAGTAAACTCAGCCAACAAAACTTAGTAAACCTTAAGAACACATCTCCACCCTACCTTCATTCATATTaGAAGTCTTTGTGGAGGAGG +
Preference number: 4 (lower is better)
Translates to: LSKLSQQNLVNLKNTSPPYLHSY*KSLWRR
Trigger: CCTCCTCCACAAAGACTTCCAATATGAATGAAGGTA...GGGTGGAGATGTGTTCTTAAGGTTTACTAAGTTTTGTTGGCTGAGTTTACTCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp TTGAGTAAACTCAGCCAACAAAACTTAGTAAACCTTAAGAACACATCTCCACCCCGTTTGTCTTTCTCATaGGTTTTTGCATGTTGCACA +
Preference number: 4 (lower is better)
Translates to: LSKLSQQNLVNLKNTSPPRLSFS*VFACCT
Trigger: TGTGCAACATGCAAAAACCCATGAGAAAGACAAACG...GGGTGGAGATGTGTTCTTAAGGTTTACTAAGTTTTGTTGGCTGAGTTTACTCAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACCTGATGGAAATACTTTaGTTGTTGGTCAGTGCTGCT +
Preference number: 4 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHLMEIL*LLVSAA
Trigger: AGCAGCACTGACCAACAACCAAAGTATTTCCATCAG...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp TTGAGTAAACTCAGCCAACAAAACTTAGTAAACCTTAAGAACACATCTCCACCCGTCTTTAGGCCATTGTaGTATTCATCAAGAGGTAAG +
Preference number: 4 (lower is better)
Translates to: LSKLSQQNLVNLKNTSPPVFRPL*YSSRGK
Trigger: CTTACCTCTTGATGAATACCACAATGGCCTAAAGAC...GGGTGGAGATGTGTTCTTAAGGTTTACTAAGTTTTGTTGGCTGAGTTTACTCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp TTGAGTAAACTCAGCCAACAAAACTTAGTAAACCTTAAGAACACATCTCCACCCTTCCCTACTGAATTCTaGACATCACAACCAACTAAA +
Preference number: 4 (lower is better)
Translates to: LSKLSQQNLVNLKNTSPPFPTEF*TSQPTK
Trigger: TTTAGTTGGTTGTGATGTTCAGAATTCAGTAGGGAA...GGGTGGAGATGTGTTCTTAAGGTTTACTAAGTTTTGTTGGCTGAGTTTACTCAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACCATGTTATTCCCTACTaGATTCTGAACATCACAACC +
Preference number: 4 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHHVIPY*ILNITT
Trigger: GGTTGTGATGTTCAGAATTCAGTAGGGAATAACATG...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp TTGAGTAAACTCAGCCAACAAAACTTAGTAAACCTTAAGAACACATCTCCACCCGTTTGTATCATTTTCTaGCCTAAATTCGTCTGTACC +
Preference number: 4 (lower is better)
Translates to: LSKLSQQNLVNLKNTSPPVCIIF*PKFVCT
Trigger: GGTACAGACGAATTTAGGTCAGAAAATGATACAAAC...GGGTGGAGATGTGTTCTTAAGGTTTACTAAGTTTTGTTGGCTGAGTTTACTCAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACGCGAGTATGAACAGGTaGATTATCCTCTCCACATTT +
Preference number: 4 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYASMNR*IILSTF
Trigger: AAATGTGGAGAGGATAATTCACCTGTTCATACTCGC...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACTGCCGTCTTTCTTGGTaGATGATCATATGCTTTAGT +
Preference number: 4 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHCRLSW*MIICFS
Trigger: ACTAAAGCATATGATCATTCACCAAGAAAGACGGCA...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACTTGGTGTCTGCATTATaGGGGTCTGATTTTCTGATC +
Preference number: 4 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYLVSAL*GSDFLI
Trigger: GATCAGAAAATCAGACCCTCATAATGCAGACACCAA...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045466.14
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACAACAGAACTATGCTTTaGCAAAGGCGTTTCTGGGTT +
Preference number: 4 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYNRTML*QRRFWV
Trigger: AACCCAGAAACGCCTTTGTCAAAGCATAGTTCTGTT...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACTGGGCAATAAGGACATaGCTTCTTCTCAAGAGACAA +
Preference number: 4 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYWAIRT*LLLKRQ
Trigger: TTGTCTCTTGAGAAGAAGTCATGTCCTTATTGCCCA...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACTTAGCGTTTACAATGTaGCGCTGTAAGTGCTTAATC +
Preference number: 4 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHLAFTM*RCKCLI
Trigger: GATTAAGCACTTACAGCGTCACATTGTAAACGCTAA...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR GCA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACAACTTGGTGTTGACTTaGTTTTTGTGGTGTAGACAG +
Preference number: 4 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHNLVLT*FLWCRQ
Trigger: CTGTCTACACCACAAAAAGCAAGTCAACACCAAGTT...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR GCA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACTGCAAATACTCCGTGTaGTTCTTCAGAATACTTCTG +
Preference number: 4 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHCKYSV*FFRILL
Trigger: CAGAAGTATTCTGAAGAAGCACACGGAGTATTTGCA...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR GCA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACGACCTTGATTTCTTCTaGTTACAATCTATGGCTGAG +
Preference number: 4 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHDLDFF*LQSMAE
Trigger: CTCAGCCATAGATTGTAAGCAGAAGAAATCAAGGTC...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACTACCTTCATTCATATTaGAAGTCTTTGTGGAGGAGG +
Preference number: 4 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHYLHSY*KSLWRR
Trigger: CCTCCTCCACAAAGACTTCCAATATGAATGAAGGTA...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACTTGACTTGCTTTTTGTaGTGTAGACAGCTGATGATC +
Preference number: 4 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHLTCFL*CRQLMI
Trigger: GATCATCAGCTGTCTACACCACAAAAAGCAAGTCAA...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACCGTTTGTCTTTCTCATaGGTTTTTGCATGTTGCACA +
Preference number: 4 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHRLSFS*VFACCT
Trigger: TGTGCAACATGCAAAAACCCATGAGAAAGACAAACG...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACACTGATGGAAATACTTTaGTTGTTGGTCAGTGCTGCT +
Preference number: 4 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTLMEIL*LLVSAA
Trigger: AGCAGCACTGACCAACAACCAAAGTATTTCCATCAG...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACGCATCTTGTCACTTGTaGCTATTTGTTCTGGTGATA +
Preference number: 4 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHASCHL*LFVLVI
Trigger: TATCACCAGAACAAATAGCCACAAGTGACAAGATGC...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACATTCAGAACACAGATTaGAGATTTGTGAGCATCCCA +
Preference number: 4 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHIQNTD*RFVSIP
Trigger: TGGGATGCTCACAAATCTCCAATCTGTGTTCTGAAT...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACAACAGAACTTGGTGTTaGCTTGCTTTTTGTGGTGTA +
Preference number: 4 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYNRTWC*LAFCGV
Trigger: TACACCACAAAAAGCAAGTCAACACCAAGTTCTGTT...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACAAACAGAACTTGGTGTTaGCTTGCTTTTTGTGGTGTA +
Preference number: 4 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTNRTWC*LAFCGV
Trigger: TACACCACAAAAAGCAAGTCAACACCAAGTTCTGTT...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACGTCTTTCTTGGTGAATaGTCATATGCTTTAGTAGTG +
Preference number: 4 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHVFLGE*SYALVV
Trigger: CACTACTAAAGCATATGATCATTCACCAAGAAAGAC...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACTGCCGTCTTTCTTGGTaGATGATCATATGCTTTAGT +
Preference number: 4 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYCRLSW*MIICFS
Trigger: ACTAAAGCATATGATCATTCACCAAGAAAGACGGCA...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAGATTGGAGATTTGTaGGCATCCCATTTAGTTTTC +
Preference number: 4 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYQIGDL*ASHLVF
Trigger: GAAAACTAAATGGGATGCTCACAAATCTCCAATCTG...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACATTAGCGTTTACAATGTaGCGCTGTAAGTGCTTAATC +
Preference number: 4 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTLAFTM*RCKCLI
Trigger: GATTAAGCACTTACAGCGTCACATTGTAAACGCTAA...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR GCA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACAAACTTGGTGTTGACTTaGTTTTTGTGGTGTAGACAG +
Preference number: 4 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTNLVLT*FLWCRQ
Trigger: CTGTCTACACCACAAAAAGCAAGTCAACACCAAGTT...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR GCA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACTTTCTCATGGGTTTTTaGATGTTGCACAAACGTCTT +
Preference number: 4 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHFLMGF*MLHKRL
Trigger: AAGACGTTTGTGCAACATGCAAAAACCCATGAGAAA...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR GCA 90 bp TTGAGTAAACTCAGCCAACAAAACTTAGTAAACCTTAAGAACACATCTCCACCCTACTTCTCTTCGTTTTaGATCATCTCATTCAGAACA +
Preference number: 4 (lower is better)
Translates to: LSKLSQQNLVNLKNTSPPYFSSF*IISFRT
Trigger: TGTTCTGAATGAGATGATGCAAAACGAAGAGAAGTA...GGGTGGAGATGTGTTCTTAAGGTTTACTAAGTTTTGTTGGCTGAGTTTACTCAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR GCA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACGACCTTGATTTCTTCTaGTTACAATCTATGGCTGAG +
Preference number: 4 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYDLDFF*LQSMAE
Trigger: CTCAGCCATAGATTGTAAGCAGAAGAAATCAAGGTC...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR GCA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACTTAGCATTTTCTTCTTaGTTCCAGATCTTGACCTTG +
Preference number: 4 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHLAFSS*FQILTL
Trigger: CAAGGTCAAGATCTGGAAGCAAGAAGAAAATGCTAA...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACTGTCTGACAATCTTTTaGTTTATGAACTCCACTGTC +
Preference number: 4 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHCLTIF*FMNSTV
Trigger: GACAGTGGAGTTCATAAACCAAAAGATTGTCAGACA...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACATTGACTTGCTTTTTGTaGTGTAGACAGCTGATGATC +
Preference number: 4 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTLTCFL*CRQLMI
Trigger: GATCATCAGCTGTCTACACCACAAAAAGCAAGTCAA...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACTTTAATGGAATGGGTTaGATTCTTAGCATGTGCTAC +
Preference number: 4 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHFNGMG*ILSMCY
Trigger: GTAGCACATGCTAAGAATCCAACCCATTCCATTAAA...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACTACATCATATGCCTGTaGAGATGCTTTTTCTCCCTA +
Preference number: 4 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYYIICL*RCFFSL
Trigger: TAGGGAGAAAAAGCATCTCCACAGGCATATGATGTA...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACACGTTTGTCTTTCTCATaGGTTTTTGCATGTTGCACA +
Preference number: 4 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTRLSFS*VFACCT
Trigger: TGTGCAACATGCAAAAACCCATGAGAAAGACAAACG...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACAGCATCTTGTCACTTGTaGCTATTTGTTCTGGTGATA +
Preference number: 4 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTASCHL*LFVLVI
Trigger: TATCACCAGAACAAATAGCCACAAGTGACAAGATGC...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACGCATCTTGTCACTTGTaGCTATTTGTTCTGGTGATA +
Preference number: 4 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYASCHL*LFVLVI
Trigger: TATCACCAGAACAAATAGCCACAAGTGACAAGATGC...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACAATTCAGAACACAGATTaGAGATTTGTGAGCATCCCA +
Preference number: 4 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTIQNTD*RFVSIP
Trigger: TGGGATGCTCACAAATCTCCAATCTGTGTTCTGAAT...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACACAATCTTTTGGTTTATaGACTCCACTGTCTTTCTCA +
Preference number: 4 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTQSFGL*TPLSFS
Trigger: TGAGAAAGACAGTGGAGTTCATAAACCAAAAGATTG...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAATCTTTTGGTTTATaGACTCCACTGTCTTTCTCA +
Preference number: 4 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYQSFGL*TPLSFS
Trigger: TGAGAAAGACAGTGGAGTTCATAAACCAAAAGATTG...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACATTCCCTACTGAATTCTaGACATCACAACCAACTAAA +
Preference number: 4 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTFPTEF*TSQPTK
Trigger: TTTAGTTGGTTGTGATGTTCAGAATTCAGTAGGGAA...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACGTTTGTATCATTTTCTaGCCTAAATTCGTCTGTACC +
Preference number: 4 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYVCIIF*PKFVCT
Trigger: GGTACAGACGAATTTAGGTCAGAAAATGATACAAAC...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACACTAGTCATAAGAAACTaGATGAACTCTTTTTGGGGA +
Preference number: 4 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTLVIRN*MNSFWG
Trigger: TCCCCAAAAAGAGTTCATTCAGTTTCTTATGACTAG...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCTAGTCATAAGAAACTaGATGAACTCTTTTTGGGGA +
Preference number: 4 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYLVIRN*MNSFWG
Trigger: TCCCCAAAAAGAGTTCATTCAGTTTCTTATGACTAG...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR TCA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACGTCTTTCTTGGTGAATaGTCATATGCTTTAGTAGTG +
Preference number: 4 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYVFLGE*SYALVV
Trigger: CACTACTAAAGCATATGATCATTCACCAAGAAAGAC...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR GCA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACTTTCTCATGGGTTTTTaGATGTTGCACAAACGTCTT +
Preference number: 4 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYFLMGF*MLHKRL
Trigger: AAGACGTTTGTGCAACATGCAAAAACCCATGAGAAA...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR GCA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACTACTTCTCTTCGTTTTaGATCATCTCATTCAGAACA +
Preference number: 4 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHYFSSF*IISFRT
Trigger: TGTTCTGAATGAGATGATGCAAAACGAAGAGAAGTA...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR GCA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACTTAGCATTTTCTTCTTaGTTCCAGATCTTGACCTTG +
Preference number: 4 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYLAFSS*FQILTL
Trigger: CAAGGTCAAGATCTGGAAGCAAGAAGAAAATGCTAA...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACATGTCTGACAATCTTTTaGTTTATGAACTCCACTGTC +
Preference number: 4 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTCLTIF*FMNSTV
Trigger: GACAGTGGAGTTCATAAACCAAAAGATTGTCAGACA...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CCA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACTTTAATGGAATGGGTTaGATTCTTAGCATGTGCTAC +
Preference number: 4 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYFNGMG*ILSMCY
Trigger: GTAGCACATGCTAAGAATCCAACCCATTCCATTAAA...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR GCA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACATACTTCTCTTCGTTTTaGATCATCTCATTCAGAACA +
Preference number: 4 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTYFSSF*IISFRT
Trigger: TGTTCTGAATGAGATGATGCAAAACGAAGAGAAGTA...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR GCA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACAGACCTTGATTTCTTCTaGTTACAATCTATGGCTAAA +
Preference number: 4 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTDLDFF*LQSMAK
Trigger: TTTAGCCATAGATTGTAAGCAGAAGAAATCAAGGTC...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112695.4
CDS CCA 90 bp CTCACAACAGGACACTTCACTGCTGCTCCGTGGGCGATGCCCCTATaGCATTCCAGCTCATTCTCCGTCACTGCCATGAAGTTACACTCC +
Preference number: 5 (lower is better)
Translates to: LTTGHFTAAPWAMPL*HSSSFSVTAMKLHS
Trigger: GGAGTGTAACTTCATGGCAGTGACGGAGAATGAGCTGGAATGCCATAGGGGCATCGCCCACGGAGCAGCAGTGAAGTGTCCTGTTGTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
ENSMUST00000127434.8
CDS TCA 90 bp GCATGTTGCACAAACGTCTTAGGGCAATTGGTACCAAACACACACTaGGGGCACTGGAGTCGAGCACTTCTGCCTTCATCCTGGAGCTCT +
Preference number: 5 (lower is better)
Translates to: ACCTNVLGQLVPNTH*GHWSRALLPSSWSS
Trigger: AGAGCTCCAGGATGAAGGCAGAAGTGCTCGACTCCAGTGCCCTCAGTGTGTGTTTGGTACCAATTGCCCTAAGACGTTTGTGCAACATGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
ENSMUST00000127434.8
CDS GCA 90 bp TCCGTGGGCGATGCCCCTATGGCATTCCAGCTCATTCTCCGTCACTaGCATGAAGTTACACTCCTCACAGCAGTAGTACCGTTTGTCTTT +
Preference number: 5 (lower is better)
Translates to: SVGDAPMAFQLILRH*HEVTLLTAVVPFVF
Trigger: AAAGACAAACGGTACTACTGCTGTGAGGAGTGTAACTTCATGGCAGTGACGGAGAATGAGCTGGAATGCCATAGGGGCATCGCCCACGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
ENSMUST00000127434.8
CDS TCA 90 bp GGGCGATGCCCCTATGGCATTCCAGCTCATTCTCCGTCACTGCCATaGAGTTACACTCCTCACAGCAGTAGTACCGTTTGTCTTTCTCAT +
Preference number: 5 (lower is better)
Translates to: GRCPYGIPAHSPSLP*SYTPHSSSTVCLSH
Trigger: ATGAGAAAGACAAACGGTACTACTGCTGTGAGGAGTGTAACTTCATGGCAGTGACGGAGAATGAGCTGGAATGCCATAGGGGCATCGCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
ENSMUST00000127434.8
CDS GCA 90 bp CCACTGGGCAGTTCAGGCTTTCTTTCACCACACTCACTTAAGAAATaGAGCCCTTCTTCCTCTGATGCAGACACTGAGAGAGCCTCTGTC +
Preference number: 5 (lower is better)
Translates to: PLGSSGFLSPHSLKK*SPSSSDADTERASV
Trigger: GACAGAGGCTCTCTCAGTGTCTGCATCAGAGGAAGAAGGGCTGCATTTCTTAAGTGAGTGTGGTGAAAGAAAGCCTGAACTGCCCAGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS GCA 90 bp AATTGGTACCAAACACACACTGAGGGCACTGGAGTCGAGCACTTCTaGCTTCATCCTGGAGCTCTTTCAGCTCACGAATCTCTTCCATCA +
Preference number: 5 (lower is better)
Translates to: NWYQTHTEGTGVEHF*LHPGALSAHESLPS
Trigger: TGATGGAAGAGATTCGTGAGCTGAAAGAGCTCCAGGATGAAGGCAGAAGTGCTCGACTCCAGTGCCCTCAGTGTGTGTTTGGTACCAATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
ENSMUST00000127434.8
CDS TCA 90 bp GTCGGGATAGCTATCCAAGTCCTCTCCAGCAGAGCTTTCCTTCTTTaGGGCCTTAGCTACTCTTTTCACAGCTACACGCTTGTGGTCTTT +
Preference number: 5 (lower is better)
Translates to: VGIAIQVLSSRAFLL*GLSYSFHSYTLVVF
Trigger: AAAGACCACAAGCGTGTAGCTGTGAAAAGAGTAGCTAAGGCCTCAAAGAAGGAAAGCTCTGCTGGAGAGGACTTGGATAGCTATCCCGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS GCA 90 bp CTGTGGAGGCGTCGCCCTGACCCACCTCTGCTTGACTTAGTAAAGTaGTCTCTGACTTCATGTTATTCCCTACTGAATTCTGAACATCAC +
Preference number: 5 (lower is better)
Translates to: LWRRRPDPPLLDLVK*SLTSCYSLLNSEHH
Trigger: GTGATGTTCAGAATTCAGTAGGGAATAACATGAAGTCAGAGAGCACTTTACTAAGTCAAGCAGAGGTGGGTCAGGGCGACGCCTCCACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
ENSMUST00000127434.8
ENSMUST00000137285.8
CDS CCA 90 bp TGCCCTGGCGTTAGGTTTTTCTCTTGGGGCCTGATGGAAATACTTTaGTTGTTGGTCAGTGCTGCTCTTAACCATAACGTTCTTGTGAGG +
Preference number: 5 (lower is better)
Translates to: CPGVRFFSWGLMEIL*LLVSAALNHNVLVR
Trigger: CCTCACAAGAACGTTATGGTTAAGAGCAGCACTGACCAACAACCAAAGTATTTCCATCAGGCCCCAAGAGAAAAACCTAACGCCAGGGCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCCGAATTTACACCAGATaGGGCAATGCTTTTCCGGGC +
Preference number: 5 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLRIYTR*GNAFPG
Trigger: GCCCGGAAAAGCATTGCCCAATCTGGTGTAAATTCG...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCCCCTGGCCCTCTATCTaGCTTTTAAACAGGGGCAAT +
Preference number: 5 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLPWPSI*LLNRGN
Trigger: ATTGCCCCTGTTTAAAAGCAAGATAGAGGGCCAGGG...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS GCA 90 bp TTACCAAAGGAGTCAACACACGCCGAGGAATGCAAATACTCCGTGTaGTTCTTCAGAATACTTCTGGCTGAAGTAGTGAAGGGACACATC +
Preference number: 5 (lower is better)
Translates to: LPKESTHAEECKYSV*FFRILLAEVVKGHI
Trigger: GATGTGTCCCTTCACTACTTCAGCCAGAAGTATTCTGAAGAAGCACACGGAGTATTTGCATTCCTCGGCGTGTGTTGACTCCTTTGGTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
ENSMUST00000127434.8
CDS GCA 90 bp TCAAGTCCCAGTGGATTACCAAAGGAGTCAACACACGCCGAGGAATaGAAATACTCCGTGTGCTTCTTCAGAATACTTCTGGCTGAAGTA +
Preference number: 5 (lower is better)
Translates to: SSPSGLPKESTHAEE*KYSVCFFRILLAEV
Trigger: TACTTCAGCCAGAAGTATTCTGAAGAAGCACACGGAGTATTTGCATTCCTCGGCGTGTGTTGACTCCTTTGGTAATCCACTGGGACTTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCGCTTTTCCGGGCTTTTaGTATTCTATGTGGCCGCTT +
Preference number: 5 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLAFPGF*YSMWPL
Trigger: AAGCGGCCACATAGAATACAAAAAGCCCGGAAAAGC...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS TCA 90 bp AACACTACCTTCATTCATATTGGAAGTCTTTGTGGAGGAGGAGCATaGGACTGGTCCATTAACAACAGCTCCTGTGGGCAAGGGAAAGTT +
Preference number: 5 (lower is better)
Translates to: NTTFIHIGSLCGGGA*DWSINNSSCGQGKV
Trigger: AACTTTCCCTTGCCCACAGGAGCTGTTGTTAATGGACCAGTCTCATGCTCCTCCTCCACAAAGACTTCCAATATGAATGAAGGTAGTGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
ENSMUST00000122980.8
ENSMUST00000127434.8
ENSMUST00000137285.8
ENSMUST00000155495.8
CDS-3UTR CAA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCTCATATTGGAAGTCTTaGTGGAGGAGGAGCATGAGA +
Preference number: 5 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLSYWKS*WRRSMR
Trigger: TCTCATGCTCCTCCTCCACAAAGACTTCCAATATGA...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCCAACCTGAAGAATTTTaGATTTTCCAGGTGCACGGC +
Preference number: 5 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLQPEEF*IFQVHG
Trigger: GCCGTGCACCTGGAAAATCAAAAATTCTTCAGGTTG...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCGTGAGGAGACTTGTTTaGACTGCACGAATTTACACC +
Preference number: 5 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLVRRLV*TARIYT
Trigger: GGTGTAAATTCGTGCAGTCAAAACAAGTCTCCTCAC...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCTTCACAGCTACACGCTaGTGGTCTTTCTCGTTTTCT +
Preference number: 5 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLFTATR*WSFSFS
Trigger: AGAAAACGAGAAAGACCACAAGCGTGTAGCTGTGAA...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS TCA 90 bp GGGAGAAACAAAGCAGACTGGCCTCCACTTAAGGCTTGTTCTGATTaGTCCTCTGACAATTCCTCAGATCGAGTCAATGAACTGTTTTTC +
Preference number: 5 (lower is better)
Translates to: GRNKADWPPLKACSD*SSDNSSDRVNELFF
Trigger: GAAAAACAGTTCATTGACTCGATCTGAGGAATTGTCAGAGGATCAATCAGAACAAGCCTTAAGTGGAGGCCAGTCTGCTTTGTTTCTCCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
ENSMUST00000122980.8
ENSMUST00000124263.2
ENSMUST00000127434.8
ENSMUST00000137285.8
ENSMUST00000155495.8
CDS TCA 90 bp TTCATAGCTCAATCCTGCTCTGTGAAGATGTCCTCGGACATGATTTaGCAACCCAACACCTGTTTCAAATGTTGCTGGGCAATAAGGACA +
Preference number: 5 (lower is better)
Translates to: FIAQSCSVKMSSDMI*QPNTCFKCCWAIRT
Trigger: TGTCCTTATTGCCCAGCAACATTTGAAACAGGTGTTGGGTTGTCAAATCATGTCCGAGGACATCTTCACAGAGCAGGATTGAGCTATGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS TCA 90 bp TCTTTTGAAGTGCTGCATCTTGTCACTTGTGGCTATTTGTTCTGGTaGTACAACATGACGGGCTTCATAGCTCAATCCTGCTCTGTGAAG +
Preference number: 5 (lower is better)
Translates to: SFEVLHLVTCGYLFW*YNMTGFIAQSCSVK
Trigger: CTTCACAGAGCAGGATTGAGCTATGAAGCCCGTCATGTTGTATCACCAGAACAAATAGCCACAAGTGACAAGATGCAGCACTTCAAAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS GCA 90 bp ACACTCCTCACAGCAGTAGTACCGTTTGTCTTTCTCATGGGTTTTTaGATGTTGCACAAACGTCTTAGGGCAATTGGTACCAAACACACA +
Preference number: 5 (lower is better)
Translates to: TLLTAVVPFVFLMGF*MLHKRLRAIGTKHT
Trigger: TGTGTGTTTGGTACCAATTGCCCTAAGACGTTTGTGCAACATGCAAAAACCCATGAGAAAGACAAACGGTACTACTGCTGTGAGGAGTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
ENSMUST00000127434.8
CDS GCA 90 bp GCATCCTGTTTTAAAGCAGAGTTCTTTGGAAATGTACTTGGCTGCTaGTTAGCTAATGACTTGGTGCTATCGACATCTACAGACTCCTCG +
Preference number: 5 (lower is better)
Translates to: ASCFKAEFFGNVLGC*LANDLVLSTSTDSS
Trigger: CGAGGAGTCTGTAGATGTCGATAGCACCAAGTCATTAGCTAAGCAGCAGCCAAGTACATTTCCAAAGAACTCTGCTTTAAAACAGGATGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCCTACCTTCATTCATATaGGAAGTCTTTGTGGAGGAG +
Preference number: 5 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLLPSFI*EVFVEE
Trigger: CTCCTCCACAAAGACTTCCAATATGAATGAAGGTAG...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCCTGAATGAACTCTTTTaGGGGATCCCAGTTTGTATC +
Preference number: 5 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLLNELF*GIPVCI
Trigger: GATACAAACTGGGATCCCCAAAAAGAGTTCATTCAG...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCAGTTCTGTGAGTCTATaGCTTGCATCTCCTCGTTTT +
Preference number: 5 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLSSVSL*LASPRF
Trigger: AAAACGAGGAGATGCAAGCAATAGACTCACAGAACT...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCTTGAAGTGCTGCATCTaGTCACTTGTGGCTATTTGT +
Preference number: 5 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLLKCCI*SLVAIC
Trigger: ACAAATAGCCACAAGTGACAAGATGCAGCACTTCAA...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCTTGATAACCCAATCTTaGTGTCAAACCAACCACCAC +
Preference number: 5 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLLITQS*CQTNHH
Trigger: GTGGTGGTTGGTTTGACACAAAGATTGGGTTATCAA...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCTCTGTCTTTAGGCCATaGTGGTATTCATCAAGAGGT +
Preference number: 5 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLSVFRP*WYSSRG
Trigger: ACCTCTTGATGAATACCACAATGGCCTAAAGACAGA...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCAGTCAAGTCCATTTTTaGTGGCTGATAGATCAACGG +
Preference number: 5 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLSQVHF*WLIDQR
Trigger: CCGTTGATCTATCAGCCACAAAAAATGGACTTGACT...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCTCTTGCTTCCAGATCTaGACCTTGATTTCTTCTGCT +
Preference number: 5 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLSCFQI*TLISSA
Trigger: AGCAGAAGAAATCAAGGTCAAGATCTGGAAGCAAGA...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCAAACAGAACTTGGTGTaGACTTGCTTTTTGTGGTGT +
Preference number: 5 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLKQNLV*TCFLWC
Trigger: ACACCACAAAAAGCAAGTCAACACCAAGTTCTGTTT...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCTTAAAGCAGAGTTCTTaGGAAATGTACTTGGCTGCT +
Preference number: 5 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLLKQSS*EMYLAA
Trigger: AGCAGCCAAGTACATTTCCAAAGAACTCTGCTTTAA...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCGTTAGCATTTTCTTCTaGCTTCCAGATCTTGACCTT +
Preference number: 5 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLVSIFF*LPDLDL
Trigger: AAGGTCAAGATCTGGAAGCAAGAAGAAAATGCTAAC...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS TCA 90 bp ACAGAACTATGCTTTGACAAAGGCGTTTCTGGGTTTTCCAAATGCTaGGGATCATGTATATCCTGTAAAAAGCTGTTAGTGCCACCGTCT +
Preference number: 5 (lower is better)
Translates to: TELCFDKGVSGFSKC*GSCISCKKLLVPPS
Trigger: AGACGGTGGCACTAACAGCTTTTTACAGGATATACATGATCCTCAGCATTTGGAAAACCCAGAAACGCCTTTGTCAAAGCATAGTTCTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS GCA 90 bp TTAGCATCCTGTTTTAAAGCAGAGTTCTTTGGAAATGTACTTGGCTaGTGCTTAGCTAATGACTTGGTGCTATCGACATCTACAGACTCC +
Preference number: 5 (lower is better)
Translates to: LASCFKAEFFGNVLG*CLANDLVLSTSTDS
Trigger: GGAGTCTGTAGATGTCGATAGCACCAAGTCATTAGCTAAGCAGCAGCCAAGTACATTTCCAAAGAACTCTGCTTTAAAACAGGATGCTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS GCA 90 bp TGTAAACCTCGTCAGCACCATGAGGCAACGTTAGCATTTTCTTCTTaGTTCCAGATCTTGACCTTGATTTCTTCTGCTTACAATCTATGG +
Preference number: 5 (lower is better)
Translates to: CKPRQHHEATLAFSS*FQILTLISSAYNLW
Trigger: CCATAGATTGTAAGCAGAAGAAATCAAGGTCAAGATCTGGAAGCAAGAAGAAAATGCTAACGTTGCCTCATGGTGCTGACGAGGTTTACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCATGTCTGACAATCTTTaGGTTTATGAACTCCACTGT +
Preference number: 5 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLMSDNL*VYELHC
Trigger: ACAGTGGAGTTCATAAACCAAAAGATTGTCAGACAT...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACCGAATTTACACCAGATaGGGCAATGCTTTTCCGGGC +
Preference number: 5 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHRIYTR*GNAFPG
Trigger: GCCCGGAAAAGCATTGCCCAATCTGGTGTAAATTCG...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCATACTTCTCTTCGTTTaGCATCATCTCATTCAGAAC +
Preference number: 5 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLILLFV*HHLIQN
Trigger: GTTCTGAATGAGATGATGCAAAACGAAGAGAAGTAT...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp GAATCATCACAGTTTATCATGACCAAGACACCTGCACCGTACTGTCCATTCCTCTTCCAGATCTTGACCTaGATTTCTTCTGCTTACAAT +
Preference number: 5 (lower is better)
Translates to: ESSQFIMTKTPAPYCPFLFQILT*ISSAYN
Trigger: ATTGTAAGCAGAAGAAATCAAGGTCAAGATCTGGAA...GAGGAATGGACAGTACGGTGCAGGTGTCTTGGTCATGATAAACTGTGATGATTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS TCA 90 bp TTCAGCTCACGAATCTCTTCCATCAGCTTCTGCCGTCTTTCTTGGTaGATGATCATATGCTTTAGTAGTGAATTACGATCTCGAAATGTC +
Preference number: 5 (lower is better)
Translates to: FSSRISSISFCRLSW*MIICFSSELRSRNV
Trigger: GACATTTCGAGATCGTAATTCACTACTAAAGCATATGATCATTCACCAAGAAAGACGGCAGAAGCTGATGGAAGAGATTCGTGAGCTGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
ENSMUST00000127434.8
CDS-3UTR CAA 90 bp TTGAGTAAACTCAGCCAACAAAACTTAGTAAACCTTAAGAACACATCTCCACCCGTGTTGACTTGCTTTTaGTGGTGTAGACAGCTGATG +
Preference number: 5 (lower is better)
Translates to: LSKLSQQNLVNLKNTSPPVLTCF*WCRQLM
Trigger: CATCAGCTGTCTACACCACAAAAAGCAAGTCAACAC...GGGTGGAGATGTGTTCTTAAGGTTTACTAAGTTTTGTTGGCTGAGTTTACTCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCGAATTTACACCAGATaGGGCAATGCTTTTCCGGGC +
Preference number: 5 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYRIYTR*GNAFPG
Trigger: GCCCGGAAAAGCATTGCCCAATCTGGTGTAAATTCG...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp TTGAGTAAACTCAGCCAACAAAACTTAGTAAACCTTAAGAACACATCTCCACCCGTGAGGAGACTTGTTTaGACTGCACGAATTTACACC +
Preference number: 5 (lower is better)
Translates to: LSKLSQQNLVNLKNTSPPVRRLV*TARIYT
Trigger: GGTGTAAATTCGTGCAGTCAAAACAAGTCTCCTCAC...GGGTGGAGATGTGTTCTTAAGGTTTACTAAGTTTTGTTGGCTGAGTTTACTCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACCCTGATGGAAATACTTaGGTTGTTGGTCAGTGCTGC +
Preference number: 5 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHPDGNT*VVGQCC
Trigger: GCAGCACTGACCAACAACCAAAGTATTTCCATCAGG...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCCCTGGCCCTCTATCTaGCTTTTAAACAGGGGCAAT +
Preference number: 5 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYPWPSI*LLNRGN
Trigger: ATTGCCCCTGTTTAAAAGCAAGATAGAGGGCCAGGG...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp TTGAGTAAACTCAGCCAACAAAACTTAGTAAACCTTAAGAACACATCTCCACCCCACCTGTTTCAAATGTaGCTGGGCAATAAGGACATG +
Preference number: 5 (lower is better)
Translates to: LSKLSQQNLVNLKNTSPPHLFQM*LGNKDM
Trigger: CATGTCCTTATTGCCCAGCAACATTTGAAACAGGTG...GGGTGGAGATGTGTTCTTAAGGTTTACTAAGTTTTGTTGGCTGAGTTTACTCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACGTCCTCGGACATGATTaGACAACCCAACACCTGTTT +
Preference number: 5 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHVLGHD*TTQHLF
Trigger: AAACAGGTGTTGGGTTGTCAAATCATGTCCGAGGAC...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp TTGAGTAAACTCAGCCAACAAAACTTAGTAAACCTTAAGAACACATCTCCACCCCATTCAGAACACAGATaGGAGATTTGTGAGCATCCC +
Preference number: 5 (lower is better)
Translates to: LSKLSQQNLVNLKNTSPPHSEHR*EICEHP
Trigger: GGGATGCTCACAAATCTCCAATCTGTGTTCTGAATG...GGGTGGAGATGTGTTCTTAAGGTTTACTAAGTTTTGTTGGCTGAGTTTACTCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACTCATATTGGAAGTCTTaGTGGAGGAGGAGCATGAGA +
Preference number: 5 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHSYWKS*WRRSMR
Trigger: TCTCATGCTCCTCCTCCACAAAGACTTCCAATATGA...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACAGCTTTTCCGGGCTTTTaGTATTCTATGTGGCCGCTT +
Preference number: 5 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTAFPGF*YSMWPL
Trigger: AAGCGGCCACATAGAATACAAAAAGCCCGGAAAAGC...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACGTGAGGAGACTTGTTTaGACTGCACGAATTTACACC +
Preference number: 5 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHVRRLV*TARIYT
Trigger: GGTGTAAATTCGTGCAGTCAAAACAAGTCTCCTCAC...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACACCTGATGGAAATACTTaGGTTGTTGGTCAGTGCTGC +
Preference number: 5 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTPDGNT*VVGQCC
Trigger: GCAGCACTGACCAACAACCAAAGTATTTCCATCAGG...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACTTCACAGCTACACGCTaGTGGTCTTTCTCGTTTTCT +
Preference number: 5 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHFTATR*WSFSFS
Trigger: AGAAAACGAGAAAGACCACAAGCGTGTAGCTGTGAA...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp TTGAGTAAACTCAGCCAACAAAACTTAGTAAACCTTAAGAACACATCTCCACCCAAACAGAACTATGCTTaGACAAAGGCGTTTCTGGGT +
Preference number: 5 (lower is better)
Translates to: LSKLSQQNLVNLKNTSPPKQNYA*TKAFLG
Trigger: ACCCAGAAACGCCTTTGTCAAAGCATAGTTCTGTTT...GGGTGGAGATGTGTTCTTAAGGTTTACTAAGTTTTGTTGGCTGAGTTTACTCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACCACCTGTTTCAAATGTaGCTGGGCAATAAGGACATG +
Preference number: 5 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHHLFQM*LGNKDM
Trigger: CATGTCCTTATTGCCCAGCAACATTTGAAACAGGTG...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACAGTCCTCGGACATGATTaGACAACCCAACACCTGTTT +
Preference number: 5 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTVLGHD*TTQHLF
Trigger: AAACAGGTGTTGGGTTGTCAAATCATGTCCGAGGAC...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACGCTGCATCTTGTCACTaGTGGCTATTTGTTCTGGTG +
Preference number: 5 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYAASCH*WLFVLV
Trigger: CACCAGAACAAATAGCCACAAGTGACAAGATGCAGC...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACAGCTGCATCTTGTCACTaGTGGCTATTTGTTCTGGTG +
Preference number: 5 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTAASCH*WLFVLV
Trigger: CACCAGAACAAATAGCCACAAGTGACAAGATGCAGC...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCCGTTGCCAGTTCTTTaGAAGTGCTGCATCTTGTCA +
Preference number: 5 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYPLPVL*KCCILS
Trigger: TGACAAGATGCAGCACTTCAAAAGAACTGGCAACGG...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACACCGTTGCCAGTTCTTTaGAAGTGCTGCATCTTGTCA +
Preference number: 5 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTPLPVL*KCCILS
Trigger: TGACAAGATGCAGCACTTCAAAAGAACTGGCAACGG...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp TTGAGTAAACTCAGCCAACAAAACTTAGTAAACCTTAAGAACACATCTCCACCCGAACAAATCTCTTTCTaGCTGTCTGGTTATGGGTCT +
Preference number: 5 (lower is better)
Translates to: LSKLSQQNLVNLKNTSPPEQISF*LSGYGS
Trigger: AGACCCATAACCAGACAGCAAGAAAGAGATTTGTTC...GGGTGGAGATGTGTTCTTAAGGTTTACTAAGTTTTGTTGGCTGAGTTTACTCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp TTGAGTAAACTCAGCCAACAAAACTTAGTAAACCTTAAGAACACATCTCCACCCAGTCAAGTCCATTTTTaGTGGCTGATAGATCAACGG +
Preference number: 5 (lower is better)
Translates to: LSKLSQQNLVNLKNTSPPSQVHF*WLIDQR
Trigger: CCGTTGATCTATCAGCCACAAAAAATGGACTTGACT...GGGTGGAGATGTGTTCTTAAGGTTTACTAAGTTTTGTTGGCTGAGTTTACTCAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp TTGAGTAAACTCAGCCAACAAAACTTAGTAAACCTTAAGAACACATCTCCACCCTCTTGCTTCCAGATCTaGACCTTGATTTCTTCTGCT +
Preference number: 5 (lower is better)
Translates to: LSKLSQQNLVNLKNTSPPSCFQI*TLISSA
Trigger: AGCAGAAGAAATCAAGGTCAAGATCTGGAAGCAAGA...GGGTGGAGATGTGTTCTTAAGGTTTACTAAGTTTTGTTGGCTGAGTTTACTCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACCTACCTTCATTCATATaGGAAGTCTTTGTGGAGGAG +
Preference number: 5 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHLPSFI*EVFVEE
Trigger: CTCCTCCACAAAGACTTCCAATATGAATGAAGGTAG...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACAGTGTTGACTTGCTTTTaGTGGTGTAGACAGCTGATG +
Preference number: 5 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTVLTCF*WCRQLM
Trigger: CATCAGCTGTCTACACCACAAAAAGCAAGTCAACAC...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACGTGTTGACTTGCTTTTaGTGGTGTAGACAGCTGATG +
Preference number: 5 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYVLTCF*WCRQLM
Trigger: CATCAGCTGTCTACACCACAAAAAGCAAGTCAACAC...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACCTGAATGAACTCTTTTaGGGGATCCCAGTTTGTATC +
Preference number: 5 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHLNELF*GIPVCI
Trigger: GATACAAACTGGGATCCCCAAAAAGAGTTCATTCAG...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAACCTGAAGAATTTTaGATTTTCCAGGTGCACGGC +
Preference number: 5 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYQPEEF*IFQVHG
Trigger: GCCGTGCACCTGGAAAATCAAAAATTCTTCAGGTTG...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp TTGAGTAAACTCAGCCAACAAAACTTAGTAAACCTTAAGAACACATCTCCACCCAATTCACATTGCACTTaGTACAGGGGTAGAATGATG +
Preference number: 5 (lower is better)
Translates to: LSKLSQQNLVNLKNTSPPNSHCT*YRGRMM
Trigger: CATCATTCTACCCCTGTACAAAGTGCAATGTGAATT...GGGTGGAGATGTGTTCTTAAGGTTTACTAAGTTTTGTTGGCTGAGTTTACTCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACATGGAAATACTTTGGTaGTTGGTCAGTGCTGCTCTT +
Preference number: 5 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHMEILW*LVSAAL
Trigger: AAGAGCAGCACTGACCAACAACCAAAGTATTTCCAT...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACTTCACAGCTACACGCTaGTGGTCTTTCTCGTTTTCT +
Preference number: 5 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYFTATR*WSFSFS
Trigger: AGAAAACGAGAAAGACCACAAGCGTGTAGCTGTGAA...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACAAACAGAACTATGCTTaGACAAAGGCGTTTCTGGGT +
Preference number: 5 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHKQNYA*TKAFLG
Trigger: ACCCAGAAACGCCTTTGTCAAAGCATAGTTCTGTTT...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACACACCTGTTTCAAATGTaGCTGGGCAATAAGGACATG +
Preference number: 5 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTHLFQM*LGNKDM
Trigger: CATGTCCTTATTGCCCAGCAACATTTGAAACAGGTG...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACTTGAAGTGCTGCATCTaGTCACTTGTGGCTATTTGT +
Preference number: 5 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHLKCCI*SLVAIC
Trigger: ACAAATAGCCACAAGTGACAAGATGCAGCACTTCAA...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCATTCAGAACACAGATaGGAGATTTGTGAGCATCCC +
Preference number: 5 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYHSEHR*EICEHP
Trigger: GGGATGCTCACAAATCTCCAATCTGTGTTCTGAATG...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACACATTCAGAACACAGATaGGAGATTTGTGAGCATCCC +
Preference number: 5 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTHSEHR*EICEHP
Trigger: GGGATGCTCACAAATCTCCAATCTGTGTTCTGAATG...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACGAACAAATCTCTTTCTaGCTGTCTGGTTATGGGTCT +
Preference number: 5 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHEQISF*LSGYGS
Trigger: AGACCCATAACCAGACAGCAAGAAAGAGATTTGTTC...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp TTGAGTAAACTCAGCCAACAAAACTTAGTAAACCTTAAGAACACATCTCCACCCATGTCTGACAATCTTTaGGTTTATGAACTCCACTGT +
Preference number: 5 (lower is better)
Translates to: LSKLSQQNLVNLKNTSPPMSDNL*VYELHC
Trigger: ACAGTGGAGTTCATAAACCAAAAGATTGTCAGACAT...GGGTGGAGATGTGTTCTTAAGGTTTACTAAGTTTTGTTGGCTGAGTTTACTCAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCTACCTTCATTCATATaGGAAGTCTTTGTGGAGGAG +
Preference number: 5 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYLPSFI*EVFVEE
Trigger: CTCCTCCACAAAGACTTCCAATATGAATGAAGGTAG...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACAAACAGAACTTGGTGTaGACTTGCTTTTTGTGGTGT +
Preference number: 5 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHKQNLV*TCFLWC
Trigger: ACACCACAAAAAGCAAGTCAACACCAAGTTCTGTTT...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACACTGAATGAACTCTTTTaGGGGATCCCAGTTTGTATC +
Preference number: 5 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTLNELF*GIPVCI
Trigger: GATACAAACTGGGATCCCCAAAAAGAGTTCATTCAG...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACAAGTTCTGTGAGTCTATaGCTTGCATCTCCTCGTTTT +
Preference number: 5 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTSSVSL*LASPRF
Trigger: AAAACGAGGAGATGCAAGCAATAGACTCACAGAACT...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACAGTTCTGTGAGTCTATaGCTTGCATCTCCTCGTTTT +
Preference number: 5 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYSSVSL*LASPRF
Trigger: AAAACGAGGAGATGCAAGCAATAGACTCACAGAACT...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACACTCGGGTTTCACTTTaGATAATGTGTAGTTCTGTG +
Preference number: 5 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHTRVSL*IMCSSV
Trigger: CACAGAACTACACATTATCAAAAGTGAAACCCGAGT...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACACTTTCTCATGGGTTTTaGCATGTTGCACAAACGTCT +
Preference number: 5 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTLSHGF*HVAQTS
Trigger: AGACGTTTGTGCAACATGCAAAAACCCATGAGAAAG...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCTTTCTCATGGGTTTTaGCATGTTGCACAAACGTCT +
Preference number: 5 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYLSHGF*HVAQTS
Trigger: AGACGTTTGTGCAACATGCAAAAACCCATGAGAAAG...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACAATGGAAATACTTTGGTaGTTGGTCAGTGCTGCTCTT +
Preference number: 5 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTMEILW*LVSAAL
Trigger: AAGAGCAGCACTGACCAACAACCAAAGTATTTCCAT...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACAAAACAGAACTATGCTTaGACAAAGGCGTTTCTGGGT +
Preference number: 5 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTKQNYA*TKAFLG
Trigger: ACCCAGAAACGCCTTTGTCAAAGCATAGTTCTGTTT...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACATTGATAACCCAATCTTaGTGTCAAACCAACCACCAC +
Preference number: 5 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTLITQS*CQTNHH
Trigger: GTGGTGGTTGGTTTGACACAAAGATTGGGTTATCAA...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACTTGATAACCCAATCTTaGTGTCAAACCAACCACCAC +
Preference number: 5 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYLITQS*CQTNHH
Trigger: GTGGTGGTTGGTTTGACACAAAGATTGGGTTATCAA...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp TTGAGTAAACTCAGCCAACAAAACTTAGTAAACCTTAAGAACACATCTCCACCCATACTTCTCTTCGTTTaGCATCATCTCATTCAGAAC +
Preference number: 5 (lower is better)
Translates to: LSKLSQQNLVNLKNTSPPILLFV*HHLIQN
Trigger: GTTCTGAATGAGATGATGCAAAACGAAGAGAAGTAT...GGGTGGAGATGTGTTCTTAAGGTTTACTAAGTTTTGTTGGCTGAGTTTACTCAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACTCTGTCTTTAGGCCATaGTGGTATTCATCAAGAGGT +
Preference number: 5 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYSVFRP*WYSSRG
Trigger: ACCTCTTGATGAATACCACAATGGCCTAAAGACAGA...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACGAACAAATCTCTTTCTaGCTGTCTGGTTATGGGTCT +
Preference number: 5 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYEQISF*LSGYGS
Trigger: AGACCCATAACCAGACAGCAAGAAAGAGATTTGTTC...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACAGTCAAGTCCATTTTTaGTGGCTGATAGATCAACGG +
Preference number: 5 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYSQVHF*WLIDQR
Trigger: CCGTTGATCTATCAGCCACAAAAAATGGACTTGACT...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACATCTTGCTTCCAGATCTaGACCTTGATTTCTTCTGCT +
Preference number: 5 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTSCFQI*TLISSA
Trigger: AGCAGAAGAAATCAAGGTCAAGATCTGGAAGCAAGA...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp AAAATATATGACTACTTACTGTCTTGTCTGAAGTATTGTTTGCTCCGATGCCACGTTAGCATTTTCTTCTaGCTTCCAGATCTTGACCTT +
Preference number: 5 (lower is better)
Translates to: KIYDYLLSCLKYCLLRCHVSIFF*LPDLDL
Trigger: AAGGTCAAGATCTGGAAGCAAGAAGAAAATGCTAAC...GTGGCATCGGAGCAAACAATACTTCAGACAAGACAGTAAGTAGTCATATATTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp TTGAGTAAACTCAGCCAACAAAACTTAGTAAACCTTAAGAACACATCTCCACCCGAATTAACCTCTTTTTaGAAAGGAAGTGGGTATGAG +
Preference number: 5 (lower is better)
Translates to: LSKLSQQNLVNLKNTSPPELTSF*KGSGYE
Trigger: CTCATACCCACTTCCTTTCAAAAAAGAGGTTAATTC...GGGTGGAGATGTGTTCTTAAGGTTTACTAAGTTTTGTTGGCTGAGTTTACTCAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112696.8
CDS-3UTR CAA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACAAACAGAACTTGGTGTaGACTTGCTTTTTGTGGTGT +
Preference number: 5 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYKQNLV*TCFLWC
Trigger: ACACCACAAAAAGCAAGTCAACACCAAGTTCTGTTT...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACACTCGGGTTTCACTTTaGATAATGTGTAGTTCTGTG +
Preference number: 5 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYTRVSL*IMCSSV
Trigger: CACAGAACTACACATTATCAAAAGTGAAACCCGAGT...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACAATTCACATTGCACTTaGTACAGGGGTAGAATGATG +
Preference number: 5 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYNSHCT*YRGRMM
Trigger: CATCATTCTACCCCTGTACAAAGTGCAATGTGAATT...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACATTAAAGCAGAGTTCTTaGGAAATGTACTTGGCTGCT +
Preference number: 5 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTLKQSS*EMYLAA
Trigger: AGCAGCCAAGTACATTTCCAAAGAACTCTGCTTTAA...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACGTTAGCATTTTCTTCTaGCTTCCAGATCTTGACCTT +
Preference number: 5 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYVSIFF*LPDLDL
Trigger: AAGGTCAAGATCTGGAAGCAAGAAGAAAATGCTAAC...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACATGTCTGACAATCTTTaGGTTTATGAACTCCACTGT +
Preference number: 5 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYMSDNL*VYELHC
Trigger: ACAGTGGAGTTCATAAACCAAAAGATTGTCAGACAT...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACAATACTTCTCTTCGTTTaGCATCATCTCATTCAGAAC +
Preference number: 5 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTILLFV*HHLIQN
Trigger: GTTCTGAATGAGATGATGCAAAACGAAGAGAAGTAT...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp AGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACCAAACATTCCAGATCTTGACCTaGATTTCTTCTGCTTACAAT +
Preference number: 5 (lower is better)
Translates to: RKVISLAVRYIYIYLYQTFQILT*ISSAYN
Trigger: ATTGTAAGCAGAAGAAATCAAGGTCAAGATCTGGAA...TGTTTGGTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS-3UTR CAA 90 bp TACCATAGGAAAGTAATTTCACTGGCAGTGAGGTATATATACATATACCTCTACTTCCAGATCTTGACCTaGATTTCTTCTGCTTACAAT +
Preference number: 5 (lower is better)
Translates to: YHRKVISLAVRYIYIYLYFQILT*ISSAYN
Trigger: ATTGTAAGCAGAAGAAATCAAGGTCAAGATCTGGAA...GTAGAGGTATATGTATATATACCTCACTGCCAGTGAAATTACTTTCCTATGGTA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112695.4
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS GCA 72 bp TCACAACAGGACACTTCACTGCTGCTCCGTGGGCGATaGCCCTATGGCATTCCAGCTCATTCTCCGTCACTG +
Preference number: 6 (lower is better)
Translates to: SQQDTSLLLRGR*PYGIPAHSPSL
Trigger: CAGTGACGGAGAATGAGCTGGAATGCCATAGGGGCATCGCCCACGGAGCAGCAGTGAAGTGTCCTGTTGTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
ENSMUST00000127434.8
CDS GCA 72 bp CAAACACACACTGAGGGCACTGGAGTCGAGCACTTCTaGCTTCATCCTGGAGCTCTTTCAGCTCACGAATCT +
Preference number: 6 (lower is better)
Translates to: QTHTEGTGVEHF*LHPGALSAHES
Trigger: AGATTCGTGAGCTGAAAGAGCTCCAGGATGAAGGCAGAAGTGCTCGACTCCAGTGCCCTCAGTGTGTGTTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
ENSMUST00000127434.8
CDS GCA 72 bp GATGCCCCTATGGCATTCCAGCTCATTCTCCGTCACTaGCATGAAGTTACACTCCTCACAGCAGTAGTACCG +
Preference number: 6 (lower is better)
Translates to: DAPMAFQLILRH*HEVTLLTAVVP
Trigger: CGGTACTACTGCTGTGAGGAGTGTAACTTCATGGCAGTGACGGAGAATGAGCTGGAATGCCATAGGGGCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
ENSMUST00000127434.8
CDS TCA 72 bp ACAAACGTCTTAGGGCAATTGGTACCAAACACACACTaGGGGCACTGGAGTCGAGCACTTCTGCCTTCATCC +
Preference number: 6 (lower is better)
Translates to: TNVLGQLVPNTH*GHWSRALLPSS
Trigger: GGATGAAGGCAGAAGTGCTCGACTCCAGTGCCCTCAGTGTGTGTTTGGTACCAATTGCCCTAAGACGTTTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
ENSMUST00000127434.8
CDS TCA 72 bp CTGTCTGCCCTGGCGTTAGGTTTTTCTCTTGGGGCCTaGTGGAAATACTTTGGTTGTTGGTCAGTGCTGCTC +
Preference number: 6 (lower is better)
Translates to: LSALALGFSLGA*WKYFGCWSVLL
Trigger: GAGCAGCACTGACCAACAACCAAAGTATTTCCATCAGGCCCCAAGAGAAAAACCTAACGCCAGGGCAGACAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS TCA 72 bp CCCTATGGCATTCCAGCTCATTCTCCGTCACTGCCATaGAGTTACACTCCTCACAGCAGTAGTACCGTTTGT +
Preference number: 6 (lower is better)
Translates to: PYGIPAHSPSLP*SYTPHSSSTVC
Trigger: ACAAACGGTACTACTGCTGTGAGGAGTGTAACTTCATGGCAGTGACGGAGAATGAGCTGGAATGCCATAGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
ENSMUST00000127434.8
CDS CAA 72 bp AGGGCAGCACTGTCTCCAGGGCCCTGGCCCTCTATCTaGCTTTTAAACAGGGGCAATAAGTTTACATGTTCT +
Preference number: 6 (lower is better)
Translates to: RAALSPGPWPSI*LLNRGNKFTCS
Trigger: AGAACATGTAAACTTATTGCCCCTGTTTAAAAGCAAGATAGAGGGCCAGGGCCCTGGAGACAGTGCTGCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS CAA 90 bp GTCAGTGCTGCTCTTAACCATAACGTTCTTGTGAGGAGACTTGTTTaGACTGCACGAATTTACACCAGATTGGGCAATGCTTTTCCGGGC +
Preference number: 6 (lower is better)
Translates to: VSAALNHNVLVRRLV*TARIYTRLGNAFPG
Trigger: GCCCGGAAAAGCATTGCCCAATCTGGTGTAAATTCGTGCAGTCAAAACAAGTCTCCTCACAAGAACGTTATGGTTAAGAGCAGCACTGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS CAA 90 bp CCTGGCGTTAGGTTTTTCTCTTGGGGCCTGATGGAAATACTTTGGTaGTTGGTCAGTGCTGCTCTTAACCATAACGTTCTTGTGAGGAGA +
Preference number: 6 (lower is better)
Translates to: PGVRFFSWGLMEILW*LVSAALNHNVLVRR
Trigger: TCTCCTCACAAGAACGTTATGGTTAAGAGCAGCACTGACCAACAACCAAAGTATTTCCATCAGGCCCCAAGAGAAAAACCTAACGCCAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS TCA 72 bp CAATCCTGCTCTGTGAAGATGTCCTCGGACATGATTTaGCAACCCAACACCTGTTTCAAATGTTGCTGGGCA +
Preference number: 6 (lower is better)
Translates to: QSCSVKMSSDMI*QPNTCFKCCWA
Trigger: TGCCCAGCAACATTTGAAACAGGTGTTGGGTTGTCAAATCATGTCCGAGGACATCTTCACAGAGCAGGATTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS TCA 72 bp GTGCTGCATCTTGTCACTTGTGGCTATTTGTTCTGGTaGTACAACATGACGGGCTTCATAGCTCAATCCTGC +
Preference number: 6 (lower is better)
Translates to: VLHLVTCGYLFW*YNMTGFIAQSC
Trigger: GCAGGATTGAGCTATGAAGCCCGTCATGTTGTATCACCAGAACAAATAGCCACAAGTGACAAGATGCAGCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS GCA 72 bp TTCACAGGCGTCCCGTTGCCAGTTCTTTTGAAGTGCTaGATCTTGTCACTTGTGGCTATTTGTTCTGGTGAT +
Preference number: 6 (lower is better)
Translates to: FTGVPLPVLLKC*ILSLVAICSGD
Trigger: ATCACCAGAACAAATAGCCACAAGTGACAAGATGCAGCACTTCAAAAGAACTGGCAACGGGACGCCTGTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS CCA 72 bp ATAACTGCTGTCTGCCCTGGCGTTAGGTTTTTCTCTTaGGGCCTGATGGAAATACTTTGGTTGTTGGTCAGT +
Preference number: 6 (lower is better)
Translates to: ITAVCPGVRFFS*GLMEILWLLVS
Trigger: ACTGACCAACAACCAAAGTATTTCCATCAGGCCCCAAGAGAAAAACCTAACGCCAGGGCAGACAGCAGTTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS CAA 72 bp TTTGGAAATGTACTTGGCTGCTGCTTAGCTAATGACTaGGTGCTATCGACATCTACAGACTCCTCGAGGCTG +
Preference number: 6 (lower is better)
Translates to: FGNVLGCCLAND*VLSTSTDSSRL
Trigger: CAGCCTCGAGGAGTCTGTAGATGTCGATAGCACCAAGTCATTAGCTAAGCAGCAGCCAAGTACATTTCCAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS CAA 72 bp TCAATCCTGCTCTGTGAAGATGTCCTCGGACATGATTaGACAACCCAACACCTGTTTCAAATGTTGCTGGGC +
Preference number: 6 (lower is better)
Translates to: SILLCEDVLGHD*TTQHLFQMLLG
Trigger: GCCCAGCAACATTTGAAACAGGTGTTGGGTTGTCAAATCATGTCCGAGGACATCTTCACAGAGCAGGATTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS CAA 72 bp GGCGTCCCGTTGCCAGTTCTTTTGAAGTGCTGCATCTaGTCACTTGTGGCTATTTGTTCTGGTGATACAACA +
Preference number: 6 (lower is better)
Translates to: GVPLPVLLKCCI*SLVAICSGDTT
Trigger: TGTTGTATCACCAGAACAAATAGCCACAAGTGACAAGATGCAGCACTTCAAAAGAACTGGCAACGGGACGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS CAA 72 bp CTAACTCGTTTCACAGGCGTCCCGTTGCCAGTTCTTTaGAAGTGCTGCATCTTGTCACTTGTGGCTATTTGT +
Preference number: 6 (lower is better)
Translates to: LTRFTGVPLPVL*KCCILSLVAIC
Trigger: ACAAATAGCCACAAGTGACAAGATGCAGCACTTCAAAAGAACTGGCAACGGGACGCCTGTGAAACGAGTTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS CAA 90 bp TCTGCAGGCTGTCCAGGGGTTAATGAAACACTACCTTCATTCATATaGGAAGTCTTTGTGGAGGAGGAGCATGAGACTGGTCCATTAACA +
Preference number: 6 (lower is better)
Translates to: SAGCPGVNETLPSFI*EVFVEEEHETGPLT
Trigger: TGTTAATGGACCAGTCTCATGCTCCTCCTCCACAAAGACTTCCAATATGAATGAAGGTAGTGTTTCATTAACCCCTGGACAGCCTGCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
ENSMUST00000122980.8
ENSMUST00000127434.8
ENSMUST00000137285.8
ENSMUST00000155495.8
CDS CAA 90 bp CTCACAGCAGTAGTACCGTTTGTCTTTCTCATGGGTTTTTGCATGTaGCACAAACGTCTTAGGGCAATTGGTACCAAACACACACTGAGG +
Preference number: 6 (lower is better)
Translates to: LTAVVPFVFLMGFCM*HKRLRAIGTKHTLR
Trigger: CCTCAGTGTGTGTTTGGTACCAATTGCCCTAAGACGTTTGTGCAACATGCAAAAACCCATGAGAAAGACAAACGGTACTACTGCTGTGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
ENSMUST00000127434.8
CDS CAA 90 bp GGCGTTAGGTTTTTCTCTTGGGGCCTGATGGAAATACTTTGGTTGTaGGTCAGTGCTGCTCTTAACCATAACGTTCTTGTGAGGAGACTT +
Preference number: 6 (lower is better)
Translates to: GVRFFSWGLMEILWL*VSAALNHNVLVRRL
Trigger: AAGTCTCCTCACAAGAACGTTATGGTTAAGAGCAGCACTGACCAACAACCAAAGTATTTCCATCAGGCCCCAAGAGAAAAACCTAACGCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS CAA 90 bp CTTCATAGCTCAATCCTGCTCTGTGAAGATGTCCTCGGACATGATTaGACAACCCAACACCTGTTTCAAATGTTGCTGGGCAATAAGGAC +
Preference number: 6 (lower is better)
Translates to: LHSSILLCEDVLGHD*TTQHLFQMLLGNKD
Trigger: GTCCTTATTGCCCAGCAACATTTGAAACAGGTGTTGGGTTGTCAAATCATGTCCGAGGACATCTTCACAGAGCAGGATTGAGCTATGAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS TCA 72 bp GGCCTGAGTCACTGTAGCAGTCCTCTGTGTAGCGAGTaGTCTTGCTCACATCCATTTTTCTCTTTCTCTTTT +
Preference number: 6 (lower is better)
Translates to: GLSHCSSPLCSE*SCSHPFFSFSF
Trigger: AAAAGAGAAAGAGAAAAATGGATGTGAGCAAGATCACTCGCTACACAGAGGACTGCTACAGTGACTCAGGCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
ENSMUST00000127434.8
CDS TCA 72 bp ACAAATCTCTTTCTTGCTGTCTGGTTATGGGTCTTGTaGGGAGAGACTGCAGAATTCCTTTCTTCGCCTAGC +
Preference number: 6 (lower is better)
Translates to: TNLFLAVWLWVL*GETAEFLSSPS
Trigger: GCTAGGCGAAGAAAGGAATTCTGCAGTCTCTCCTCACAAGACCCATAACCAGACAGCAAGAAAGAGATTTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS GCA 72 bp AGTGGATTACCAAAGGAGTCAACACACGCCGAGGAATaGAAATACTCCGTGTGCTTCTTCAGAATACTTCTG +
Preference number: 6 (lower is better)
Translates to: SGLPKESTHAEE*KYSVCFFRILL
Trigger: CAGAAGTATTCTGAAGAAGCACACGGAGTATTTGCATTCCTCGGCGTGTGTTGACTCCTTTGGTAATCCACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
ENSMUST00000127434.8
CDS CCA 72 bp ATCTCGAAATGTCCGTCCACATTCTCTACAAGCATATaGCCTGGGGACATTAAGGTGGCGAAAGTGACTATT +
Preference number: 6 (lower is better)
Translates to: ISKCPSTFSTSI*PGDIKVAKVTI
Trigger: AATAGTCACTTTCGCCACCTTAATGTCCCCAGGCCATATGCTTGTAGAGAATGTGGACGGACATTTCGAGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
ENSMUST00000127434.8
CDS CAA 90 bp ATAGCTTTTCTAACTCGTTTCACAGGCGTCCCGTTGCCAGTTCTTTaGAAGTGCTGCATCTTGTCACTTGTGGCTATTTGTTCTGGTGAT +
Preference number: 6 (lower is better)
Translates to: IAFLTRFTGVPLPVL*KCCILSLVAICSGD
Trigger: ATCACCAGAACAAATAGCCACAAGTGACAAGATGCAGCACTTCAAAAGAACTGGCAACGGGACGCCTGTGAAACGAGTTAGAAAAGCTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS CAA 90 bp TCAGACTTCTCTATAGCTTTTCTAACTCGTTTCACAGGCGTCCCGTaGCCAGTTCTTTTGAAGTGCTGCATCTTGTCACTTGTGGCTATT +
Preference number: 6 (lower is better)
Translates to: SDFSIAFLTRFTGVP*PVLLKCCILSLVAI
Trigger: AATAGCCACAAGTGACAAGATGCAGCACTTCAAAAGAACTGGCAACGGGACGCCTGTGAAACGAGTTAGAAAAGCTATAGAGAAGTCTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS TCA 72 bp AAAGCAGACTGGCCTCCACTTAAGGCTTGTTCTGATTaGTCCTCTGACAATTCCTCAGATCGAGTCAATGAA +
Preference number: 6 (lower is better)
Translates to: KADWPPLKACSD*SSDNSSDRVNE
Trigger: TTCATTGACTCGATCTGAGGAATTGTCAGAGGATCAATCAGAACAAGCCTTAAGTGGAGGCCAGTCTGCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
ENSMUST00000122980.8
ENSMUST00000124263.2
ENSMUST00000127434.8
ENSMUST00000137285.8
ENSMUST00000155495.8
CDS GCA 72 bp ACAGCAGTAGTACCGTTTGTCTTTCTCATGGGTTTTTaGATGTTGCACAAACGTCTTAGGGCAATTGGTACC +
Preference number: 6 (lower is better)
Translates to: TAVVPFVFLMGF*MLHKRLRAIGT
Trigger: GGTACCAATTGCCCTAAGACGTTTGTGCAACATGCAAAAACCCATGAGAAAGACAAACGGTACTACTGCTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
ENSMUST00000127434.8
CDS CAA 72 bp ACTCCAAGTCTCCACCAGCTGACTCGGGTTTCACTTTaGATAATGTGTAGTTCTGTGAGTCTATTGCTTGCA +
Preference number: 6 (lower is better)
Translates to: TPSLHQLTRVSL*IMCSSVSLLLA
Trigger: TGCAAGCAATAGACTCACAGAACTACACATTATCAAAAGTGAAACCCGAGTCAGCTGGTGGAGACTTGGAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
ENSMUST00000127434.8
CDS CAA 72 bp TCTATAGCTTTTCTAACTCGTTTCACAGGCGTCCCGTaGCCAGTTCTTTTGAAGTGCTGCATCTTGTCACTT +
Preference number: 6 (lower is better)
Translates to: SIAFLTRFTGVP*PVLLKCCILSL
Trigger: AAGTGACAAGATGCAGCACTTCAAAAGAACTGGCAACGGGACGCCTGTGAAACGAGTTAGAAAAGCTATAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS CAA 90 bp GATGTCCTCGGACATGATTTGACAACCCAACACCTGTTTCAAATGTaGCTGGGCAATAAGGACATGACTTCTTCTCAAGAGACAAATCAG +
Preference number: 6 (lower is better)
Translates to: DVLGHDLTTQHLFQM*LGNKDMTSSQETNQ
Trigger: CTGATTTGTCTCTTGAGAAGAAGTCATGTCCTTATTGCCCAGCAACATTTGAAACAGGTGTTGGGTTGTCAAATCATGTCCGAGGACATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS TCA 72 bp AACCCAATCTTTGTGTCAAACCAACCACCACAGAGCTaGCAAGTATGTTCGGAAGTAGTTTCAGACTTCTCT +
Preference number: 6 (lower is better)
Translates to: NPIFVSNQPPQS*QVCSEVVSDFS
Trigger: AGAGAAGTCTGAAACTACTTCCGAACATACTTGTCAGCTCTGTGGTGGTTGGTTTGACACAAAGATTGGGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS CCA 72 bp GTTAGGTTTTTCTCTTGGGGCCTGATGGAAATACTTTaGTTGTTGGTCAGTGCTGCTCTTAACCATAACGTT +
Preference number: 6 (lower is better)
Translates to: VRFFSWGLMEIL*LLVSAALNHNV
Trigger: AACGTTATGGTTAAGAGCAGCACTGACCAACAACCAAAGTATTTCCATCAGGCCCCAAGAGAAAAACCTAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS CAA 72 bp GTAGTACCGTTTGTCTTTCTCATGGGTTTTTGCATGTaGCACAAACGTCTTAGGGCAATTGGTACCAAACAC +
Preference number: 6 (lower is better)
Translates to: VVPFVFLMGFCM*HKRLRAIGTKH
Trigger: GTGTTTGGTACCAATTGCCCTAAGACGTTTGTGCAACATGCAAAAACCCATGAGAAAGACAAACGGTACTAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
ENSMUST00000127434.8
CDS CAA 72 bp GCTCTTAACCATAACGTTCTTGTGAGGAGACTTGTTTaGACTGCACGAATTTACACCAGATTGGGCAATGCT +
Preference number: 6 (lower is better)
Translates to: ALNHNVLVRRLV*TARIYTRLGNA
Trigger: AGCATTGCCCAATCTGGTGTAAATTCGTGCAGTCAAAACAAGTCTCCTCACAAGAACGTTATGGTTAAGAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS CAA 72 bp GGACATGATTTGACAACCCAACACCTGTTTCAAATGTaGCTGGGCAATAAGGACATGACTTCTTCTCAAGAG +
Preference number: 6 (lower is better)
Translates to: GHDLTTQHLFQM*LGNKDMTSSQE
Trigger: CTCTTGAGAAGAAGTCATGTCCTTATTGCCCAGCAACATTTGAAACAGGTGTTGGGTTGTCAAATCATGTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS CCA 72 bp CTTCTACTTTTAAGAAGTTCTATCAGTGTAAGAGACTaGTTCTTTCTCCCACTGGGCAGTTCAGGCTTTCTT +
Preference number: 6 (lower is better)
Translates to: LLLLRSSISVRD*FFLPLGSSGFL
Trigger: AAGAAAGCCTGAACTGCCCAGTGGGAGAAAGAACCAGTCTCTTACACTGATAGAACTTCTTAAAAGTAGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS TCA 72 bp CGAATCTCTTCCATCAGCTTCTGCCGTCTTTCTTGGTaGATGATCATATGCTTTAGTAGTGAATTACGATCT +
Preference number: 6 (lower is better)
Translates to: RISSISFCRLSW*MIICFSSELRS
Trigger: AGATCGTAATTCACTACTAAAGCATATGATCATTCACCAAGAAAGACGGCAGAAGCTGATGGAAGAGATTCG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
ENSMUST00000127434.8
CDS GCA 72 bp TTTAAAGCAGAGTTCTTTGGAAATGTACTTGGCTGCTaGTTAGCTAATGACTTGGTGCTATCGACATCTACA +
Preference number: 6 (lower is better)
Translates to: FKAEFFGNVLGC*LANDLVLSTST
Trigger: TGTAGATGTCGATAGCACCAAGTCATTAGCTAAGCAGCAGCCAAGTACATTTCCAAAGAACTCTGCTTTAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS TCA 72 bp AACACCTGTTTCAAATGTTGCTGGGCAATAAGGACATaGCTTCTTCTCAAGAGACAAATCAGTCCAATGAAA +
Preference number: 6 (lower is better)
Translates to: NTCFKCCWAIRT*LLLKRQISPMK
Trigger: TTTCATTGGACTGATTTGTCTCTTGAGAAGAAGTCATGTCCTTATTGCCCAGCAACATTTGAAACAGGTGTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045466.14
ENSMUST00000112696.8
ENSMUST00000112698.8
CDS CAA 72 bp GTAATGTCGGTGTTTATCTTCAAATCATCCATATTGTaGGCAAGATCATTTAACACCTTTAGTCTCGTTAGC +
Preference number: 6 (lower is better)
Translates to: VMSVFIFKSSIL*ARSFNTFSLVS
Trigger: GCTAACGAGACTAAAGGTGTTAAATGATCTTGCCAACAATATGGATGATTTGAAGATAAACACCGACATTAC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135108.2