Pregenerated sensors for ZFP623 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050846Ensembl transcript IDs: ENSMUST00000037260.8
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GACCAGGAGCGACTGGGAGACACTGGGACAGGAGTGGGAGCAGCCTaGAGGATGCGGTGGCAATCGCATCAACTGCATTACCAGGCATCA | + |
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Preference number: 1 (lower is better) Translates to: DQERLGDTGTGVGAA*RMRWQSHQLHYQAS Trigger: TGATGCCTGGTAATGCAGTTGATGCGATTGCCACCGCATCCTCCAGGCTGCTCCCACTCCTGTCCCAGTGTCTCCCAGTCGCTCCTGGTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037260.8 |
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| 3UTR TCA 90 bp | ATGATTGTGGTATTTAATAGCAAGTACAGTAGCAGTGGTGAACACTaGGCGACAGAAGCACAAGACACAAACCCAGCTCAGTACCAGGGA | + |
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Preference number: 1 (lower is better) Translates to: MIVVFNSKYSSSGEH*ATEAQDTNPAQYQG Trigger: TCCCTGGTACTGAGCTGGGTTTGTGTCTTGTGCTTCTGTCGCTCAGTGTTCACCACTGCTACTGTACTTGCTATTAAATACCACAATCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037260.8 |
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| 3UTR TCA 90 bp | CTTAGTGTCCTCGGGGAAACAGCAAAACAGGAAAGAGAAGGTTCATaGTTGTGGTATTTAATAGCAAGTACAGTAGCAGTGGTGAACACT | + |
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Preference number: 1 (lower is better) Translates to: LSVLGETAKQEREGS*LWYLIASTVAVVNT Trigger: AGTGTTCACCACTGCTACTGTACTTGCTATTAAATACCACAATCATGAACCTTCTCTTTCCTGTTTTGCTGTTTCCCCGAGGACACTAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037260.8 |
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| 3UTR-3UTR TCA 90 bp | GACCAGGAGCGACTGGGAGACACTGGGACAGGAGTGGGAGCAGCCTGGAGGATGGAGGTTCTCCCTCAGTaGACAGCTCAAGATCAGCTG | + |
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Preference number: 2 (lower is better) Translates to: DQERLGDTGTGVGAAWRMEVLPQ*TAQDQL Trigger: CAGCTGATCTTGAGCTGTTCACTGAGGGAGAACCTC...CATCCTCCAGGCTGCTCCCACTCCTGTCCCAGTGTCTCCCAGTCGCTCCTGGTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037260.8 |
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| 3UTR CAA 90 bp | GATGCGGTGGCAATCGCATCAACTGCATTACCAGGCATCAAACAGTaGAGGAAGCAAAGGCCAGAGATGAGTCCCAGACAACAGGGAACC | + |
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Preference number: 2 (lower is better) Translates to: DAVAIASTALPGIKQ*RKQRPEMSPRQQGT Trigger: GGTTCCCTGTTGTCTGGGACTCATCTCTGGCCTTTGCTTCCTCAACTGTTTGATGCCTGGTAATGCAGTTGATGCGATTGCCACCGCATC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037260.8 |
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| 3UTR-3UTR GCA 90 bp | GGCATCAAACAGTTGAGGAAGCAAAGGCCAGAGATGAGTCCCAGACAACAGGGAGTCCTTTGGCTTGCCTaGCTTGGTGACAGACAACAG | + |
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Preference number: 2 (lower is better) Translates to: GIKQLRKQRPEMSPRQQGVLWLA*LGDRQQ Trigger: CTGTTGTCTGTCACCAAGGCAGGCAAGCCAAAGGAC...TCCCTGTTGTCTGGGACTCATCTCTGGCCTTTGCTTCCTCAACTGTTTGATGCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037260.8 |
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| 3UTR-3UTR CCA 90 bp | GCCAATGATACATCCTTAGTGTCCTCGGGGAAACAGCAAAACAGGAAAGAGAAGATGACCAGGAGCGACTaGGAGACACTGGGACAGGAG | + |
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Preference number: 2 (lower is better) Translates to: ANDTSLVSSGKQQNRKEKMTRSD*ETLGQE Trigger: CTCCTGTCCCAGTGTCTCCCAGTCGCTCCTGGTCAT...CTTCTCTTTCCTGTTTTGCTGTTTCCCCGAGGACACTAAGGATGTATCATTGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037260.8 |
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| 3UTR-3UTR TCA 90 bp | ACAGGAAAGAGAAGGTTCATGATTGTGGTATTTAATAGCAAGTACAGTAGCAGTCAGGCATCAAACAGTTaGGGAAGCAAAGGCCAGAGA | + |
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Preference number: 2 (lower is better) Translates to: TGKRRFMIVVFNSKYSSSQASNS*GSKGQR Trigger: TCTCTGGCCTTTGCTTCCTCAACTGTTTGATGCCTG...ACTGCTACTGTACTTGCTATTAAATACCACAATCATGAACCTTCTCTTTCCTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037260.8 |
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| 3UTR-3UTR CAA 90 bp | GGGACAGGAGTGGGAGCAGCCTGGAGGATGCGGTGGCAATCGCATCAACTGCATCCAGGCATCAAACAGTaGAGGAAGCAAAGGCCAGAG | + |
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Preference number: 3 (lower is better) Translates to: GTGVGAAWRMRWQSHQLHPGIKQ*RKQRPE Trigger: CTCTGGCCTTTGCTTCCTCAACTGTTTGATGCCTGG...ATGCAGTTGATGCGATTGCCACCGCATCCTCCAGGCTGCTCCCACTCCTGTCCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037260.8 |
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| 3UTR CCA 72 bp | ACTGGGACAGGAGTGGGAGCAGCCTGGAGGATGCGGTaGCAATCGCATCAACTGCATTACCAGGCATCAAAC | + |
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Preference number: 3 (lower is better) Translates to: TGTGVGAAWRMR*QSHQLHYQASN Trigger: GTTTGATGCCTGGTAATGCAGTTGATGCGATTGCCACCGCATCCTCCAGGCTGCTCCCACTCCTGTCCCAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037260.8 |
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| 3UTR CCA 72 bp | CTCAGTGAACAGCTCAAGATCAGCTGTCTAGTCCTTTaGCTTGCCTGCCTTGGTGACAGACAACAGACCAGT | + |
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Preference number: 3 (lower is better) Translates to: LSEQLKISCLVL*LACLGDRQQTS Trigger: ACTGGTCTGTTGTCTGTCACCAAGGCAGGCAAGCCAAAGGACTAGACAGCTGATCTTGAGCTGTTCACTGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037260.8 |
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| 3UTR-3UTR CAA 90 bp | GGCATCAAACAGTTGAGGAAGCAAAGGCCAGAGATGAGTCCCAGACAACAGGGACAGCCTATCAATGACTaGAAAAACTGTGACAATCCG | + |
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Preference number: 3 (lower is better) Translates to: GIKQLRKQRPEMSPRQQGQPIND*KNCDNP Trigger: CGGATTGTCACAGTTTTTCAAGTCATTGATAGGCTG...TCCCTGTTGTCTGGGACTCATCTCTGGCCTTTGCTTCCTCAACTGTTTGATGCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037260.8 |
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| 3UTR TCA 72 bp | GTATTTAATAGCAAGTACAGTAGCAGTGGTGAACACTaGGCGACAGAAGCACAAGACACAAACCCAGCTCAG | + |
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Preference number: 3 (lower is better) Translates to: VFNSKYSSSGEH*ATEAQDTNPAQ Trigger: CTGAGCTGGGTTTGTGTCTTGTGCTTCTGTCGCTCAGTGTTCACCACTGCTACTGTACTTGCTATTAAATAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037260.8 |
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| 3UTR-3UTR CAA 90 bp | ACAGGAAAGAGAAGGTTCATGATTGTGGTATTTAATAGCAAGTACAGTAGCAGTCAATACAGTTCTTCTTaGAAAGTACTTGAGAGTGTG | + |
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Preference number: 3 (lower is better) Translates to: TGKRRFMIVVFNSKYSSSQYSSS*KVLESV Trigger: CACACTCTCAAGTACTTTCAAAGAAGAACTGTATTG...ACTGCTACTGTACTTGCTATTAAATACCACAATCATGAACCTTCTCTTTCCTGT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037260.8 |
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| CDS-3UTR CCA 90 bp | CTGGGAGACACTGGGACAGGAGTGGGAGCAGCCTGGAGGATGCGGTGGCAATCGTCTTTCCCGCACACGTaGCACACACAGAGTCTGTCC | + |
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Preference number: 4 (lower is better) Translates to: LGDTGTGVGAAWRMRWQSSFPHT*HTQSLS Trigger: GGACAGACTCTGTGTGTGCCACGTGTGCGGGAAAGA...CGATTGCCACCGCATCCTCCAGGCTGCTCCCACTCCTGTCCCAGTGTCTCCCAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037260.8 |
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| CDS-3UTR CCA 90 bp | CTGGGAGACACTGGGACAGGAGTGGGAGCAGCCTGGAGGATGCGGTGGCAATCGAGGGAAAGATCCTCCTaGTGGACAAGATCTGGGGGT | + |
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Preference number: 4 (lower is better) Translates to: LGDTGTGVGAAWRMRWQSRERSS*WTRSGG Trigger: ACCCCCAGATCTTGTCCACCAGGAGGATCTTTCCCT...CGATTGCCACCGCATCCTCCAGGCTGCTCCCACTCCTGTCCCAGTGTCTCCCAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037260.8 |
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| CDS-3UTR TCA 90 bp | AGGAAGCAAAGGCCAGAGATGAGTCCCAGACAACAGGGAACCGACTTGCAGTTTTCACTGTCATCTGAGTaGAGCCCCCGTCCTGAGAGG | + |
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Preference number: 4 (lower is better) Translates to: RKQRPEMSPRQQGTDLQFSLSSE*SPRPER Trigger: CCTCTCAGGACGGGGGCTTCACTCAGATGACAGTGA...AAACTGCAAGTCGGTTCCCTGTTGTCTGGGACTCATCTCTGGCCTTTGCTTCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037260.8 |
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| CDS-3UTR TCA 90 bp | CTTTGGCTTGCCTGCCTTGGTGACAGACAACAGACCAGTAACAGCCTATCAATGGGCCTCTCCCTGGTATaGACCCTCTGGTGTCGAAGC | + |
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Preference number: 4 (lower is better) Translates to: LWLACLGDRQQTSNSLSMGLSLV*TLWCRS Trigger: GCTTCGACACCAGAGGGTTCATACCAGGGAGAGGCC...CATTGATAGGCTGTTACTGGTCTGTTGTCTGTCACCAAGGCAGGCAAGCCAAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037260.8 |
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| CDS-3UTR GCA 90 bp | GACAGAAGCACAAGACACAAACCCAGCTCAGTACCAGGGAAGCACTTTTGGCCAGGACTCTCCAAGCTCTaGTTGTCTGGGTTCCCCAAC | + |
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Preference number: 4 (lower is better) Translates to: DRSTRHKPSSVPGKHFWPGLSKL*LSGFPN Trigger: GTTGGGGAACCCAGACAAGCAGAGCTTGGAGAGTCC...TGGCCAAAAGTGCTTCCCTGGTACTGAGCTGGGTTTGTGTCTTGTGCTTCTGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037260.8 |
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| CDS-3UTR GCA 90 bp | GACAGAAGCACAAGACACAAACCCAGCTCAGTACCAGGGAAGCACTTTTGGCCACTGTGGATTCGCTGGTaGTGGGTGAAGTTGGATGTC | + |
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Preference number: 4 (lower is better) Translates to: DRSTRHKPSSVPGKHFWPLWIRW*WVKLDV Trigger: GACATCCAACTTCACCCAGCACCAGCGAATCCACAG...TGGCCAAAAGTGCTTCCCTGGTACTGAGCTGGGTTTGTGTCTTGTGCTTCTGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037260.8 |
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| CDS-3UTR CCA 90 bp | GTGGTGAACACTGAGCGACAGAAGCACAAGACACAAACCCAGCTCAGTACCAGGGACAAGATCTGGGGGTaGGGTAAGATCTTTCCCAAG | + |
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Preference number: 4 (lower is better) Translates to: VVNTERQKHKTQTQLSTRDKIWG*GKIFPK Trigger: CTTGGGAAAGATCTTACCCCACCCCCAGATCTTGTC...CCTGGTACTGAGCTGGGTTTGTGTCTTGTGCTTCTGTCGCTCAGTGTTCACCAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037260.8 |
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| CDS-3UTR TCA 90 bp | AGGAAGCAAAGGCCAGAGATGAGTCCCAGACAACAGGGAACCGACTTGCAGTTTGCTGTGTCTCCTGTTTaGATCTTCCAGTGGGTCACT | + |
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Preference number: 4 (lower is better) Translates to: RKQRPEMSPRQQGTDLQFAVSPV*IFQWVT Trigger: AGTGACCCACTGGAAGATTCAAACAGGAGACACAGC...AAACTGCAAGTCGGTTCCCTGTTGTCTGGGACTCATCTCTGGCCTTTGCTTCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037260.8 |
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| CDS-3UTR TCA 90 bp | ATTACCAGGCATCAAACAGTTGAGGAAGCAAAGGCCAGAGATGAGTCCCAGACAGGAGGGAGGTCTGACTaGAGCCTTTCCCACAATGAT | + |
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Preference number: 4 (lower is better) Translates to: ITRHQTVEEAKARDESQTGGRSD*SLSHND Trigger: ATCATTGTGGGAAAGGCTTCAGTCAGACCTCCCTCC...TGTCTGGGACTCATCTCTGGCCTTTGCTTCCTCAACTGTTTGATGCCTGGTAAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037260.8 |
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| CDS-3UTR TCA 90 bp | CACAAGACACAAACCCAGCTCAGTACCAGGGAAGCACTTTTGGCCATGACGCCTTCTTCTGGTGTCGTATaGGGTATGAGCTCAGAAAGA | + |
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Preference number: 4 (lower is better) Translates to: HKTQTQLSTREALLAMTPSSGVV*GMSSER Trigger: TCTTTCTGAGCTCATACCTCATACGACACCAGAAGA...AGGCGTCATGGCCAAAAGTGCTTCCCTGGTACTGAGCTGGGTTTGTGTCTTGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037260.8 |
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| CDS-3UTR TCA 90 bp | ACAGAAGCACAAGACACAAACCCAGCTCAGTACCAGGGAAGCACTTTTGGCCATGCCAATCTGTCTTCATaGAATTCCCGAGACTCAGAG | + |
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Preference number: 4 (lower is better) Translates to: TEAQDTNPAQYQGSTFGHANLSS*NSRDSE Trigger: CTCTGAGTCTCGGGAATTTCATGAAGACAGATTGGC...ATGGCCAAAAGTGCTTCCCTGGTACTGAGCTGGGTTTGTGTCTTGTGCTTCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037260.8 |
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| CDS-3UTR CCA 90 bp | AAGCCCCTTTCTCTAACCTTTCAGACAGGGAACCATTTCTCAAGTAACAATACAACCCGTTCACCAGTGTaGATCTTCTGGTGTCGTATG | + |
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Preference number: 4 (lower is better) Translates to: KPLSLTFQTGNHFSSNNTTRSPV*IFWCRM Trigger: CATACGACACCAGAAGATCCACACTGGTGAACGGGT...TGTATTGTTACTTGAGAAATGGTTCCCTGTCTGAAAGGTTAGAGAAAGGGGCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037260.8 |
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| CDS-3UTR TCA 90 bp | AGCAAAACAGGAAAGAGAAGGTTCATGATTGTGGTATTTAATAGCAAGTACAGTCACACTGTGCACACTTaGACGGCTTTTCCCCAGTAT | + |
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Preference number: 4 (lower is better) Translates to: SKTGKRRFMIVVFNSKYSHTVHT*TAFPQY Trigger: ATACTGGGGAAAAGCCGTTCAAGTGTGCACAGTGTG...ACTGTACTTGCTATTAAATACCACAATCATGAACCTTCTCTTTCCTGTTTTGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000037260.8 |
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| CDS CCA 90 bp | GAAGCCCCCGTCCTGAGAGGAGGGACTCTCCAAGCTCTGCTTGTCTaGGTTCCCCAACAGCTGCGCCAATCTGTCTTCATGAAATTCCCG | + |
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Preference number: 5 (lower is better) Translates to: EAPVLRGGTLQALLV*VPQQLRQSVFMKFP Trigger: CGGGAATTTCATGAAGACAGATTGGCGCAGCTGTTGGGGAACCCAGACAAGCAGAGCTTGGAGAGTCCCTCCTCTCAGGACGGGGGCTTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037260.8 |
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| CDS TCA 90 bp | CTCTGCTTGTCTGGGTTCCCCAACAGCTGCGCCAATCTGTCTTCATaGAATTCCCGAGACTCAGAGGCAGAGGGCTCCAGCACTGTGAGT | + |
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Preference number: 5 (lower is better) Translates to: LCLSGFPNSCANLSS*NSRDSEAEGSSTVS Trigger: ACTCACAGTGCTGGAGCCCTCTGCCTCTGAGTCTCGGGAATTTCATGAAGACAGATTGGCGCAGCTGTTGGGGAACCCAGACAAGCAGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037260.8 |
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| CDS TCA 90 bp | CTGTGTCTCCTGTTTGAATCTTCCAGTGGGTCACTGTCATCTGAGTaGAGCCCCCGTCCTGAGAGGAGGGACTCTCCAAGCTCTGCTTGT | + |
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Preference number: 5 (lower is better) Translates to: LCLLFESSSGSLSSE*SPRPERRDSPSSAC Trigger: ACAAGCAGAGCTTGGAGAGTCCCTCCTCTCAGGACGGGGGCTTCACTCAGATGACAGTGACCCACTGGAAGATTCAAACAGGAGACACAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037260.8 |
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| CDS TCA 90 bp | GTAAGGCTTCTCCCCCGTGTGCGAGATCTGATGCGGAACTACATCTaGATTAAATGGGAAGCCTTTGCCACCACCACCACAGGAACGGGC | + |
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Preference number: 5 (lower is better) Translates to: VRLLPRVRDLMRNYI*IKWEAFATTTTGTG Trigger: GCCCGTTCCTGTGGTGGTGGTGGCAAAGGCTTCCCATTTAATTCAGATGTAGTTCCGCATCAGATCTCGCACACGGGGGAGAAGCCTTAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037260.8 |
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| CDS CCA 90 bp | GGTCTCACTCAGGGAAAGATCCTCCTGGTGGACAAGATCTGGGGGTaGGGTAAGATCTTTCCCAAGTTGGCTATACGTGTAGCGCTTCTC | + |
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Preference number: 5 (lower is better) Translates to: GLTQGKILLVDKIWG*GKIFPKLAIRVALL Trigger: GAGAAGCGCTACACGTATAGCCAACTTGGGAAAGATCTTACCCCACCCCCAGATCTTGTCCACCAGGAGGATCTTTCCCTGAGTGAGACC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037260.8 |
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| CDS-3UTR CAA 90 bp | GCATTACCAGGCATCAAACAGTTGAGGAAGCAAAGGCCAGAGATGAGTCCCAGAGGCTGTGTCTCCTGTTaGAATCTTCCAGTGGGTCAC | + |
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Preference number: 5 (lower is better) Translates to: ALPGIKQLRKQRPEMSPRGCVSC*NLPVGH Trigger: GTGACCCACTGGAAGATTCAAACAGGAGACACAGCC...TCTGGGACTCATCTCTGGCCTTTGCTTCCTCAACTGTTTGATGCCTGGTAATGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037260.8 |
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| CDS-3UTR CAA 90 bp | ATTACCAGGCATCAAACAGTTGAGGAAGCAAAGGCCAGAGATGAGTCCCAGACACCACACTGTGCACACTaGAACGGCTTTTCCCCAGTA | + |
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Preference number: 5 (lower is better) Translates to: ITRHQTVEEAKARDESQTPHCAH*NGFSPV Trigger: TACTGGGGAAAAGCCGTTCAAGTGTGCACAGTGTGG...TGTCTGGGACTCATCTCTGGCCTTTGCTTCCTCAACTGTTTGATGCCTGGTAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037260.8 |
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| CDS TCA 90 bp | CCACCACCACCACAGGAACGGGCCTCCGCATCTATGAGTTCTCTCTaGAGTATAAGAAGGTTTGAATTGAGAATGGGGTTTCTTCCTGAC | + |
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Preference number: 5 (lower is better) Translates to: PPPPQERASASMSSL*SIRRFELRMGFLPD Trigger: GTCAGGAAGAAACCCCATTCTCAATTCAAACCTTCTTATACTTCAGAGAGAACTCATAGATGCGGAGGCCCGTTCCTGTGGTGGTGGTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037260.8 |
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| CDS-3UTR CAA 90 bp | TCAACTGCATTACCAGGCATCAAACAGTTGAGGAAGCAAAGGCCAGAGATGAGTTTAAATGGGAAGCCTTaGCCACCACCACCACAGGAA | + |
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Preference number: 5 (lower is better) Translates to: STALPGIKQLRKQRPEMSLNGKP*PPPPQE Trigger: TTCCTGTGGTGGTGGTGGCAAAGGCTTCCCATTTAA...ACTCATCTCTGGCCTTTGCTTCCTCAACTGTTTGATGCCTGGTAATGCAGTTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037260.8 |
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| CDS-3UTR CAA 90 bp | AACTGCATTACCAGGCATCAAACAGTTGAGGAAGCAAAGGCCAGAGATGAGTCCATAAGAAGGTTTGAATaGAGAATGGGGTTTCTTCCT | + |
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Preference number: 5 (lower is better) Translates to: NCITRHQTVEEAKARDESIRRFE*RMGFLP Trigger: AGGAAGAAACCCCATTCTCAATTCAAACCTTCTTAT...GGACTCATCTCTGGCCTTTGCTTCCTCAACTGTTTGATGCCTGGTAATGCAGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037260.8 |
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| CDS TCA 72 bp | TCTGGGTTCCCCAACAGCTGCGCCAATCTGTCTTCATaGAATTCCCGAGACTCAGAGGCAGAGGGCTCCAGC | + |
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Preference number: 6 (lower is better) Translates to: SGFPNSCANLSS*NSRDSEAEGSS Trigger: GCTGGAGCCCTCTGCCTCTGAGTCTCGGGAATTTCATGAAGACAGATTGGCGCAGCTGTTGGGGAACCCAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037260.8 |
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| CDS TCA 72 bp | CTGTTTGAATCTTCCAGTGGGTCACTGTCATCTGAGTaGAGCCCCCGTCCTGAGAGGAGGGACTCTCCAAGC | + |
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Preference number: 6 (lower is better) Translates to: LFESSSGSLSSE*SPRPERRDSPS Trigger: GCTTGGAGAGTCCCTCCTCTCAGGACGGGGGCTTCACTCAGATGACAGTGACCCACTGGAAGATTCAAACAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037260.8 |
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| CDS CCA 72 bp | CAGGGAAAGATCCTCCTGGTGGACAAGATCTGGGGGTaGGGTAAGATCTTTCCCAAGTTGGCTATACGTGTA | + |
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Preference number: 6 (lower is better) Translates to: QGKILLVDKIWG*GKIFPKLAIRV Trigger: TACACGTATAGCCAACTTGGGAAAGATCTTACCCCACCCCCAGATCTTGTCCACCAGGAGGATCTTTCCCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037260.8 |
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| CDS CCA 72 bp | CTCACTCAGGGAAAGATCCTCCTGGTGGACAAGATCTaGGGGTGGGGTAAGATCTTTCCCAAGTTGGCTATA | + |
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Preference number: 6 (lower is better) Translates to: LTQGKILLVDKI*GWGKIFPKLAI Trigger: TATAGCCAACTTGGGAAAGATCTTACCCCACCCCCAGATCTTGTCCACCAGGAGGATCTTTCCCTGAGTGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037260.8 |
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| CDS TCA 72 bp | CCACAGGAACGGGCCTCCGCATCTATGAGTTCTCTCTaGAGTATAAGAAGGTTTGAATTGAGAATGGGGTTT | + |
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Preference number: 6 (lower is better) Translates to: PQERASASMSSL*SIRRFELRMGF Trigger: AAACCCCATTCTCAATTCAAACCTTCTTATACTTCAGAGAGAACTCATAGATGCGGAGGCCCGTTCCTGTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037260.8 |
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