Pregenerated sensors for ZFP617 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000066880Ensembl transcript IDs: ENSMUST00000119003.2, ENSMUST00000131544.8
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGGCGTGCGCCACCACGCCCGGCTTCCATACTGTTATCTTGCATTTaGAAATGGATCGAAAATACTTCTTCATGCTATGGATTACACATT | + |
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Preference number: 1 (lower is better) Translates to: RRAPPRPASILLSCI*KWIENTSSCYGLHI Trigger: AATGTGTAATCCATAGCATGAAGAAGTATTTTCGATCCATTTGCAAATGCAAGATAACAGTATGGAAGCCGGGCGTGGTGGCGCACGCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119003.2 |
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| 3UTR CAA 90 bp | AAGGCGTGCGCCACCACGCCCGGCTTCCATACTGTTATCTTGCATTaGCAAATGGATCGAAAATACTTCTTCATGCTATGGATTACACAT | + |
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Preference number: 2 (lower is better) Translates to: KACATTPGFHTVILH*QMDRKYFFMLWITH Trigger: ATGTGTAATCCATAGCATGAAGAAGTATTTTCGATCCATTTGCAAATGCAAGATAACAGTATGGAAGCCGGGCGTGGTGGCGCACGCCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119003.2 |
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| 3UTR-3UTR CCA 90 bp | TCTTTAGTTTTACACTTCCCAAGTACTGGAATTATAGGTATATGCCATCGCACACTTTGTGGACCAGGCTaGCCTCGAACTCAGAAATCC | + |
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Preference number: 2 (lower is better) Translates to: SLVLHFPSTGIIGICHRTLCGPG*PRTQKS Trigger: GGATTTCTGAGTTCGAGGCCAGCCTGGTCCACAAAG...TGTGCGATGGCATATACCTATAATTCCAGTACTTGGGAAGTGTAAAACTAAAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119003.2 |
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| 3UTR-3UTR GCA 90 bp | TCTTTAGTTTTACACTTCCCAAGTACTGGAATTATAGGTATATGCCATCGCACATCTTCCGATTCCATGTaGATTGTTGCATGTGGGCCG | + |
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Preference number: 2 (lower is better) Translates to: SLVLHFPSTGIIGICHRTSSDSM*IVACGP Trigger: CGGCCCACATGCAACAATGCACATGGAATCGGAAGA...TGTGCGATGGCATATACCTATAATTCCAGTACTTGGGAAGTGTAAAACTAAAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119003.2 |
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| 3UTR CAA 90 bp | ACTGCTGTGTTTTTCATACTCAATCTTCCGATTCCATGTGCATTGTaGCATGTGGGCCGTCTGAAGAGCCTATTCTTAGTGTATCATTTT | + |
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Preference number: 2 (lower is better) Translates to: TAVFFILNLPIPCAL*HVGRLKSLFLVYHF Trigger: AAAATGATACACTAAGAATAGGCTCTTCAGACGGCCCACATGCAACAATGCACATGGAATCGGAAGATTGAGTATGAAAAACACAGCAGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000119003.2 |
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| 3UTR-3UTR CCA 90 bp | TCTTTAGTTTTACACTTCCCAAGTACTGGAATTATAGGTATATGCCATCGCACAAATGGATACAAACCTTaGGTTTCTTTCCAGTGTCAG | + |
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Preference number: 2 (lower is better) Translates to: SLVLHFPSTGIIGICHRTNGYKP*VSFQCQ Trigger: CTGACACTGGAAAGAAACCCAAGGTTTGTATCCATT...TGTGCGATGGCATATACCTATAATTCCAGTACTTGGGAAGTGTAAAACTAAAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119003.2 |
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| 3UTR GCA 72 bp | TGCTGTGTTTTTCATACTCAATCTTCCGATTCCATGTaGATTGTTGCATGTGGGCCGTCTGAAGAGCCTATT | + |
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Preference number: 3 (lower is better) Translates to: CCVFHTQSSDSM*IVACGPSEEPI Trigger: AATAGGCTCTTCAGACGGCCCACATGCAACAATGCACATGGAATCGGAAGATTGAGTATGAAAAACACAGCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000119003.2 |
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| 3UTR-3UTR CAA 90 bp | TCTTTAGTTTTACACTTCCCAAGTACTGGAATTATAGGTATATGCCATCGCACAATTCCATGTGCATTGTaGCATGTGGGCCGTCTGAAG | + |
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Preference number: 3 (lower is better) Translates to: SLVLHFPSTGIIGICHRTIPCAL*HVGRLK Trigger: CTTCAGACGGCCCACATGCAACAATGCACATGGAAT...TGTGCGATGGCATATACCTATAATTCCAGTACTTGGGAAGTGTAAAACTAAAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119003.2 |
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| 3UTR CCA 72 bp | CGCCCGGCTTCCATACTGTTATCTTGCATTTGCAAATaGATCGAAAATACTTCTTCATGCTATGGATTACAC | + |
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Preference number: 3 (lower is better) Translates to: RPASILLSCICK*IENTSSCYGLH Trigger: GTGTAATCCATAGCATGAAGAAGTATTTTCGATCCATTTGCAAATGCAAGATAACAGTATGGAAGCCGGGCG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119003.2 |
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| 3UTR TCA 72 bp | GGAGGTAGAAAGAATACAAGTCAGATGGGGGTAGTGTaGAATGCAGTCTTTTGTTCACTATATGGCTATTAT | + |
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Preference number: 3 (lower is better) Translates to: GGRKNTSQMGVV*NAVFCSLYGYY Trigger: ATAATAGCCATATAGTGAACAAAAGACTGCATTTCACACTACCCCCATCTGACTTGTATTCTTTCTACCTCC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119003.2 |
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| 3UTR CCA 72 bp | AGGTCAATGAAAGCATCCCATAATGGATACAAACCTTaGGTTTCTTTCCAGTGTCAGCTATGTCATGTATTT | + |
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Preference number: 3 (lower is better) Translates to: RSMKASHNGYKP*VSFQCQLCHVF Trigger: AAATACATGACATAGCTGACACTGGAAAGAAACCCAAGGTTTGTATCCATTATGGGATGCTTTCATTGACCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119003.2 |
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| CDS-3UTR CCA 90 bp | AAAGGCGTGCGCCACCACGCCCGGCTTCCATACTGTTATCTTGCATTTGCAAATGCTCACCACAGGATCTaGAATCTCACTGAAGATTTC | + |
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Preference number: 4 (lower is better) Translates to: KGVRHHARLPYCYLAFANAHHRI*NLTEDF Trigger: GAAATCTTCAGTGAGATTCCAGATCCTGTGGTGAGC...ATTTGCAAATGCAAGATAACAGTATGGAAGCCGGGCGTGGTGGCGCACGCCTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119003.2 |
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| 3UTR CAA 72 bp | GCGTGCGCCACCACGCCCGGCTTCCATACTGTTATCTaGCATTTGCAAATGGATCGAAAATACTTCTTCATG | + |
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Preference number: 4 (lower is better) Translates to: ACATTPGFHTVI*HLQMDRKYFFM Trigger: CATGAAGAAGTATTTTCGATCCATTTGCAAATGCAAGATAACAGTATGGAAGCCGGGCGTGGTGGCGCACGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119003.2 |
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| CDS-3UTR TCA 90 bp | AAAGGCGTGCGCCACCACGCCCGGCTTCCATACTGTTATCTTGCATTTGCAAATGATCTGGAATCTCACTaGAGATTTCTTCCCATTGAC | + |
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Preference number: 4 (lower is better) Translates to: KGVRHHARLPYCYLAFANDLESH*RFLPID Trigger: GTCAATGGGAAGAAATCTTCAGTGAGATTCCAGATC...ATTTGCAAATGCAAGATAACAGTATGGAAGCCGGGCGTGGTGGCGCACGCCTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119003.2 |
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| CDS-3UTR TCA 90 bp | AAAGGCGTGCGCCACCACGCCCGGCTTCCATACTGTTATCTTGCATTTGCAAATGGTTTCTCTTCTGAATaGACTACATCATGCCTTCGA | + |
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Preference number: 4 (lower is better) Translates to: KGVRHHARLPYCYLAFANGFSSE*TTSCLR Trigger: TCGAAGGCATGATGTAGTTCATTCAGAAGAGAAACC...ATTTGCAAATGCAAGATAACAGTATGGAAGCCGGGCGTGGTGGCGCACGCCTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119003.2 |
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| CDS-3UTR CCA 90 bp | AAAGGCGTGCGCCACCACGCCCGGCTTCCATACTGTTATCTTGCATTTGCAAATTCTTCTCCATACACATaGCTTTCACAGGGCTTTTCT | + |
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Preference number: 4 (lower is better) Translates to: KGVRHHARLPYCYLAFANSSPYT*LSQGFS Trigger: AGAAAAGCCCTGTGAAAGCCATGTGTATGGAGAAGA...ATTTGCAAATGCAAGATAACAGTATGGAAGCCGGGCGTGGTGGCGCACGCCTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119003.2 |
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| CDS-3UTR CCA 90 bp | AAAGGCGTGCGCCACCACGCCCGGCTTCCATACTGTTATCTTGCATTTGCAAATGTATGTGAAGGTAACTaGATTGAGCAAAGGCTTTCC | + |
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Preference number: 4 (lower is better) Translates to: KGVRHHARLPYCYLAFANVCEGN*IEQRLS Trigger: GGAAAGCCTTTGCTCAATCCAGTTACCTTCACATAC...ATTTGCAAATGCAAGATAACAGTATGGAAGCCGGGCGTGGTGGCGCACGCCTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119003.2 |
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| CDS-3UTR TCA 90 bp | AAAGGCGTGCGCCACCACGCCCGGCTTCCATACTGTTATCTTGCATTTGCAAATGTAAAGATTTTCCTGTaGAGGATTCAGCAAAGTCCA | + |
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Preference number: 4 (lower is better) Translates to: KGVRHHARLPYCYLAFANVKIFL*RIQQSP Trigger: TGGACTTTGCTGAATCCTTCACAGGAAAATCTTTAC...ATTTGCAAATGCAAGATAACAGTATGGAAGCCGGGCGTGGTGGCGCACGCCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119003.2 |
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| CDS-3UTR TCA 90 bp | AAAGGCGTGCGCCACCACGCCCGGCTTCCATACTGTTATCTTGCATTTGCAAATGAGATGAATGACCAGTaGTATCTTCTCCATACACAT | + |
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Preference number: 4 (lower is better) Translates to: KGVRHHARLPYCYLAFANEMNDQ*YLLHTH Trigger: ATGTGTATGGAGAAGATATCACTGGTCATTCATCTC...ATTTGCAAATGCAAGATAACAGTATGGAAGCCGGGCGTGGTGGCGCACGCCTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119003.2 |
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| CDS-3UTR GCA 90 bp | AAAGGCGTGCGCCACCACGCCCGGCTTCCATACTGTTATCTTGCATTTGCAAATTTCTGTCCTATATCATaGAGGTTCCTGATGGTTTCT | + |
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Preference number: 4 (lower is better) Translates to: KGVRHHARLPYCYLAFANFCPIS*RFLMVS Trigger: AGAAACCATCAGGAACCTGCATGATATAGGACAGAA...ATTTGCAAATGCAAGATAACAGTATGGAAGCCGGGCGTGGTGGCGCACGCCTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119003.2 |
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| CDS-3UTR GCA 90 bp | AAAGGCGTGCGCCACCACGCCCGGCTTCCATACTGTTATCTTGCATTTGCAAATCTTCTTTTATGTATTTaGAGGTGGCTAGAACGAGCA | + |
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Preference number: 4 (lower is better) Translates to: KGVRHHARLPYCYLAFANLLLCI*RWLERA Trigger: TGCTCGTTCTAGCCACCTGCAAATACATAAAAGAAG...ATTTGCAAATGCAAGATAACAGTATGGAAGCCGGGCGTGGTGGCGCACGCCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119003.2 |
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| 3UTR CAA 72 bp | GCCACCACGCCCGGCTTCCATACTGTTATCTTGCATTaGCAAATGGATCGAAAATACTTCTTCATGCTATGG | + |
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Preference number: 4 (lower is better) Translates to: ATTPGFHTVILH*QMDRKYFFMLW Trigger: CCATAGCATGAAGAAGTATTTTCGATCCATTTGCAAATGCAAGATAACAGTATGGAAGCCGGGCGTGGTGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119003.2 |
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| 3UTR CAA 72 bp | TTTTTCATACTCAATCTTCCGATTCCATGTGCATTGTaGCATGTGGGCCGTCTGAAGAGCCTATTCTTAGTG | + |
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Preference number: 4 (lower is better) Translates to: FFILNLPIPCAL*HVGRLKSLFLV Trigger: CACTAAGAATAGGCTCTTCAGACGGCCCACATGCAACAATGCACATGGAATCGGAAGATTGAGTATGAAAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000119003.2 |
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| CDS-3UTR CCA 90 bp | TCTTTAGTTTTACACTTCCCAAGTACTGGAATTATAGGTATATGCCATCGCACATGCTTCAGAAAGCTCTaGGGAGAACCAAAAGCCACT | + |
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Preference number: 4 (lower is better) Translates to: SLVLHFPSTGIIGICHRTCFRKL*GEPKAT Trigger: AGTGGCTTTTGGTTCTCCCCAGAGCTTTCTGAAGCA...TGTGCGATGGCATATACCTATAATTCCAGTACTTGGGAAGTGTAAAACTAAAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119003.2 |
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| CDS-3UTR CCA 90 bp | TCTTTAGTTTTACACTTCCCAAGTACTGGAATTATAGGTATATGCCATCGCACAGTATGTGAAGGGAAGTaGAACGAGCAAAGGCTTTCC | + |
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Preference number: 4 (lower is better) Translates to: SLVLHFPSTGIIGICHRTVCEGK*NEQRLS Trigger: GGAAAGCCTTTGCTCGTTCCACTTCCCTTCACATAC...TGTGCGATGGCATATACCTATAATTCCAGTACTTGGGAAGTGTAAAACTAAAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119003.2 |
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| CDS-3UTR TCA 90 bp | TCTTTAGTTTTACACTTCCCAAGTACTGGAATTATAGGTATATGCCATCGCACAGTTTTGCATCTAGTCTaGCCTCTGAGGGACACATTT | + |
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Preference number: 4 (lower is better) Translates to: SLVLHFPSTGIIGICHRTVLHLV*PLRDTF Trigger: AAATGTGTCCCTCAGAGGTCAGACTAGATGCAAAAC...TGTGCGATGGCATATACCTATAATTCCAGTACTTGGGAAGTGTAAAACTAAAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119003.2 |
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| CDS-3UTR CCA 90 bp | TCTTTAGTTTTACACTTCCCAAGTACTGGAATTATAGGTATATGCCATCGCACATTTTCTCCAGTTTTCTaGCTCACCACAGGATCTGGA | + |
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Preference number: 4 (lower is better) Translates to: SLVLHFPSTGIIGICHRTFSPVF*LTTGSG Trigger: TCCAGATCCTGTGGTGAGCCAGAAAACTGGAGAAAA...TGTGCGATGGCATATACCTATAATTCCAGTACTTGGGAAGTGTAAAACTAAAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000119003.2 |
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| CDS-3UTR CCA 90 bp | TCTTTAGTTTTACACTTCCCAAGTACTGGAATTATAGGTATATGCCATCGCACAAGCTTCTCTACCACTTaGTATCTTAGATTTCCCCCA | + |
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Preference number: 4 (lower is better) Translates to: SLVLHFPSTGIIGICHRTSFSTT*YLRFPP Trigger: TGGGGGAAATCTAAGATACCAAGTGGTAGAGAAGCT...TGTGCGATGGCATATACCTATAATTCCAGTACTTGGGAAGTGTAAAACTAAAGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119003.2 |
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| CDS-3UTR CCA 90 bp | TCTTTAGTTTTACACTTCCCAAGTACTGGAATTATAGGTATATGCCATCGCACATTATGTATTTGCAGGTaGCTAGAACGAGCAAAGGCT | + |
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Preference number: 4 (lower is better) Translates to: SLVLHFPSTGIIGICHRTLCICR*LERAKA Trigger: AGCCTTTGCTCGTTCTAGCCACCTGCAAATACATAA...TGTGCGATGGCATATACCTATAATTCCAGTACTTGGGAAGTGTAAAACTAAAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119003.2 |
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| CDS-3UTR CCA 90 bp | TCTTTAGTTTTACACTTCCCAAGTACTGGAATTATAGGTATATGCCATCGCACATTATGTATTTGCAGGTaGCTAGAACGAGTGAAGGCT | + |
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Preference number: 4 (lower is better) Translates to: SLVLHFPSTGIIGICHRTLCICR*LERVKA Trigger: AGCCTTCACTCGTTCTAGCCACCTGCAAATACATAA...TGTGCGATGGCATATACCTATAATTCCAGTACTTGGGAAGTGTAAAACTAAAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119003.2 |
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| 3UTR CAA 72 bp | TATCAGGTAGACAACACAGCCCAGAACTCAAAACTCTaGATCTTTAGTTTTACACTTCCCAAGTACTGGAAT | + |
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Preference number: 4 (lower is better) Translates to: YQVDNTAQNSKL*IFSFTLPKYWN Trigger: ATTCCAGTACTTGGGAAGTGTAAAACTAAAGATCAAGAGTTTTGAGTTCTGGGCTGTGTTGTCTACCTGATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119003.2 |
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| CDS-3UTR TCA 90 bp | TCTTTAGTTTTACACTTCCCAAGTACTGGAATTATAGGTATATGCCATCGCACATTTCTCTCATGGGCTTaGACATTACTCTGTCTCTTA | + |
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Preference number: 4 (lower is better) Translates to: SLVLHFPSTGIIGICHRTFLSWA*TLLCLL Trigger: TAAGAGACAGAGTAATGTTCAAGCCCATGAGAGAAA...TGTGCGATGGCATATACCTATAATTCCAGTACTTGGGAAGTGTAAAACTAAAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119003.2 |
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| CDS-3UTR GCA 90 bp | TCTTTAGTTTTACACTTCCCAAGTACTGGAATTATAGGTATATGCCATCGCACAGTTATTTTATGTATTTaGAGGTGGCTAGAACGAGTG | + |
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Preference number: 4 (lower is better) Translates to: SLVLHFPSTGIIGICHRTVILCI*RWLERV Trigger: CACTCGTTCTAGCCACCTGCAAATACATAAAATAAC...TGTGCGATGGCATATACCTATAATTCCAGTACTTGGGAAGTGTAAAACTAAAGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119003.2 |
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| CDS-3UTR CAA 90 bp | AAAGGCGTGCGCCACCACGCCCGGCTTCCATACTGTTATCTTGCATTTGCAAATTCGAAGGTAGCTAGATaGAGTGAATGCTTTCCCACA | + |
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Preference number: 5 (lower is better) Translates to: KGVRHHARLPYCYLAFANSKVAR*SECFPT Trigger: TGTGGGAAAGCATTCACTCAATCTAGCTACCTTCGA...ATTTGCAAATGCAAGATAACAGTATGGAAGCCGGGCGTGGTGGCGCACGCCTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119003.2 |
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| CDS-3UTR CAA 90 bp | AAAGGCGTGCGCCACCACGCCCGGCTTCCATACTGTTATCTTGCATTTGCAAATGAAGATTTCTTCCCATaGACTATCTTCTTCATACTC | + |
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Preference number: 5 (lower is better) Translates to: KGVRHHARLPYCYLAFANEDFFP*TIFFIL Trigger: GAGTATGAAGAAGATAGTCAATGGGAAGAAATCTTC...ATTTGCAAATGCAAGATAACAGTATGGAAGCCGGGCGTGGTGGCGCACGCCTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119003.2 |
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| CDS-3UTR CAA 90 bp | AAAGGCGTGCGCCACCACGCCCGGCTTCCATACTGTTATCTTGCATTTGCAAATAGTTATTTTATGTATTaGCAGGTGGCTAGAACGAGT | + |
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Preference number: 5 (lower is better) Translates to: KGVRHHARLPYCYLAFANSYFMY*QVARTS Trigger: ACTCGTTCTAGCCACCTGCAAATACATAAAATAACT...ATTTGCAAATGCAAGATAACAGTATGGAAGCCGGGCGTGGTGGCGCACGCCTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119003.2 |
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| CDS-3UTR CAA 90 bp | TCTTTAGTTTTACACTTCCCAAGTACTGGAATTATAGGTATATGCCATCGCACATCCAGTGTGACTTCTTaGATGTATGTGAAGGTAACT | + |
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Preference number: 5 (lower is better) Translates to: SLVLHFPSTGIIGICHRTSSVTS*MYVKVT Trigger: AGTTACCTTCACATACATCAAAGAAGTCACACTGGA...TGTGCGATGGCATATACCTATAATTCCAGTACTTGGGAAGTGTAAAACTAAAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119003.2 |
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| CDS-3UTR CAA 90 bp | TCTTTAGTTTTACACTTCCCAAGTACTGGAATTATAGGTATATGCCATCGCACACTCTTGTGTGTAAATTaGTTCATGCTTCAGAAAGCT | + |
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Preference number: 5 (lower is better) Translates to: SLVLHFPSTGIIGICHRTLLCVN*FMLQKA Trigger: AGCTTTCTGAAGCATGAACAAATTTACACACAAGAG...TGTGCGATGGCATATACCTATAATTCCAGTACTTGGGAAGTGTAAAACTAAAGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119003.2 |
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| CDS GCA 72 bp | TCAGTGTTCTGTTCTCCCAATTTCTGTCCTATATCATaGAGGTTCCTGATGGTTTCTCTCATCACCGCTCTG | + |
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Preference number: 6 (lower is better) Translates to: SVFCSPNFCPIS*RFLMVSLITAL Trigger: CAGAGCGGTGATGAGAGAAACCATCAGGAACCTGCATGATATAGGACAGAAATTGGGAGAACAGAACACTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000119003.2 ENSMUST00000131544.8 |
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