RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZFP609 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000040524

Ensembl transcript IDs: ENSMUST00000159109.2, ENSMUST00000160747.2

Found 433 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ACAGTGAGGGGTATGGCTGCTGTGCTGTCTTCAGACTTTATCCCGTaGTTGGGGTCCCTCCCAGGTGTGTGTTGCTGCTCTGGCAGCAGA +
Preference number: 1 (lower is better)
Translates to: TVRGMAAVLSSDFIP*LGSLPGVCCCSGSR
Trigger: TCTGCTGCCAGAGCAGCAACACACACCTGGGAGGGACCCCAAGCACGGGATAAAGTCTGAAGACAGCACAGCAGCCATACCCCTCACTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR CCA 90 bp GAGCAAGAGCATGGGCAGGGTGGCTTAGTGAGAGGCTTGGTTTGGTaGTCTGCACCAGATCCTGTCTTTCTGACTAGGTGTGGAGGTGGA +
Preference number: 1 (lower is better)
Translates to: EQEHGQGGLVRGLVW*SAPDPVFLTRCGGG
Trigger: TCCACCTCCACACCTAGTCAGAAAGACAGGATCTGGTGCAGACCACCAAACCAAGCCTCTCACTAAGCCACCCTGCCCATGCTCTTGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR TCA 90 bp ACTGAAATTAAATTCAACAGAGCAACGCCAATGGAACAAAAGCTATaGACAGCAACACTGTCCCTCCAGCCCGAGCCTCCAGCTTGCCCC +
Preference number: 1 (lower is better)
Translates to: TEIKFNRATPMEQKL*TATLSLQPEPPACP
Trigger: GGGGCAAGCTGGAGGCTCGGGCTGGAGGGACAGTGTTGCTGTTCATAGCTTTTGTTCCATTGGCGTTGCTCTGTTGAATTTAATTTCAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR CCA 90 bp GTGGAGGTGGACAGTTTTGAAGCACTAGTCAGGAGTTTCCACAGCTaGAGCTGTAGTGTATGTAATACTACTTCAGAGCGGGAAGACCGG +
Preference number: 1 (lower is better)
Translates to: VEVDSFEALVRSFHS*SCSVCNTTSEREDR
Trigger: CCGGTCTTCCCGCTCTGAAGTAGTATTACATACACTACAGCTCCAGCTGTGGAAACTCCTGACTAGTGCTTCAAAACTGTCCACCTCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR CCA 90 bp TTATATACATGGAGGGTTCATGAGTTCTCGGGAGCTAGCTTCTCTTaGGCTTTGTGCTTAATGTCTCCCACCACCCCACTTTCCCAAAGA +
Preference number: 1 (lower is better)
Translates to: LYTWRVHEFSGASFS*ALCLMSPTTPLSQR
Trigger: TCTTTGGGAAAGTGGGGTGGTGGGAGACATTAAGCACAAAGCCCAAGAGAAGCTAGCTCCCGAGAACTCATGAACCCTCCATGTATATAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR CCA 90 bp GTGGAGAGAGTAGGCTTAGTGGAGACTACATGTACAAGTATAAGATaGGGAAATGAGGAAGTAGATGTGAGTCCTAAGCAGCAGCTGGCA +
Preference number: 1 (lower is better)
Translates to: VERVGLVETTCTSIR*GNEEVDVSPKQQLA
Trigger: TGCCAGCTGCTGCTTAGGACTCACATCTACTTCCTCATTTCCCCATCTTATACTTGTACATGTAGTCTCCACTAAGCCTACTCTCTCCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR TCA 90 bp GAAGACGTGACTCCAACAAAGCTAGGTCATCACTTTTTCCTAACATaGCTTTGTAGCTCAGGAGAACAGAGAAATGCCTGCCACCTCAAA +
Preference number: 1 (lower is better)
Translates to: EDVTPTKLGHHFFLT*LCSSGEQRNACHLK
Trigger: TTTGAGGTGGCAGGCATTTCTCTGTTCTCCTGAGCTACAAAGTCATGTTAGGAAAAAGTGATGACCTAGCTTTGTTGGAGTCACGTCTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR CAA 90 bp GTGAGGGGTATGGCTGCTGTGCTGTCTTCAGACTTTATCCCGTGCTaGGGGTCCCTCCCAGGTGTGTGTTGCTGCTCTGGCAGCAGACCA +
Preference number: 2 (lower is better)
Translates to: VRGMAAVLSSDFIPC*GSLPGVCCCSGSRP
Trigger: TGGTCTGCTGCCAGAGCAGCAACACACACCTGGGAGGGACCCCAAGCACGGGATAAAGTCTGAAGACAGCACAGCAGCCATACCCCTCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR-3UTR TCA 90 bp AATTTCTCCACGTGCTGCCAGTTCCCAGGGCCCAAACCACTGAGGAGATGTGGACAGTTCTCCAGCTCCTaGGGAAGAGGGAGGGTCGGG +
Preference number: 2 (lower is better)
Translates to: NFSTCCQFPGPKPLRRCGQFSSS*GRGRVG
Trigger: CCCGACCCTCCCTCTTCCTCAGGAGCTGGAGAACTG...TCCACATCTCCTCAGTGGTTTGGGCCCTGGGAACTGGCAGCACGTGGAGAAATT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR-3UTR GCA 90 bp GGTGGCTTAGTGAGAGGCTTGGTTTGGTGGTCTGCACCAGATCCTGTCTTTCTGAGGCAGCCAAGGGTCTaGCTTCAGTCACGGTCGGAA +
Preference number: 2 (lower is better)
Translates to: GGLVRGLVWWSAPDPVFLRQPRV*LQSRSE
Trigger: TTCCGACCGTGACTGAAGGCAGACCCTTGGCTGCCT...CAGAAAGACAGGATCTGGTGCAGACCACCAAACCAAGCCTCTCACTAAGCCACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR-3UTR CCA 90 bp CCAGCTAGCTGCCCAGCTGAATCTTGGGGGCCATCAGAGTACACAGATAAGGTAGTGAGAGGCTTGGTTTaGTGGTCTGCACCAGATCCT +
Preference number: 2 (lower is better)
Translates to: PASCPAESWGPSEYTDKVVRGLV*WSAPDP
Trigger: AGGATCTGGTGCAGACCACCAAACCAAGCCTCTCAC...TACCTTATCTGTGTACTCTGATGGCCCCCAAGATTCAGCTGGGCAGCTAGCTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR-3UTR GCA 90 bp CCAGCTAGCTGCCCAGCTGAATCTTGGGGGCCATCAGAGTACACAGATAAGGTAAGTGAGGGGTATGGCTaGTGTGCTGTCTTCAGACTT +
Preference number: 2 (lower is better)
Translates to: PASCPAESWGPSEYTDKVSEGYG*CAVFRL
Trigger: AAGTCTGAAGACAGCACAGCAGCCATACCCCTCACT...TACCTTATCTGTGTACTCTGATGGCCCCCAAGATTCAGCTGGGCAGCTAGCTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR-3UTR CCA 90 bp GGTGGCTTAGTGAGAGGCTTGGTTTGGTGGTCTGCACCAGATCCTGTCTTTCTGTCGAATGAGCCAGTCTaGCCCATGAAGCTGACTTCA +
Preference number: 2 (lower is better)
Translates to: GGLVRGLVWWSAPDPVFLSNEPV*PMKLTS
Trigger: TGAAGTCAGCTTCATGGGCCAGACTGGCTCATTCGA...CAGAAAGACAGGATCTGGTGCAGACCACCAAACCAAGCCTCTCACTAAGCCACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR-3UTR TCA 90 bp AGGGATAAGGCCTGGGAGGGGCCCATGGCAGGGAATCACTGGAAAGTTTCCTTGTCTATTAATACTGCCTaGGTTGTAGAAGCCAAGCAG +
Preference number: 2 (lower is better)
Translates to: RDKAWEGPMAGNHWKVSLSINTA*VVEAKQ
Trigger: CTGCTTGGCTTCTACAACTCAGGCAGTATTAATAGA...CAAGGAAACTTTCCAGTGATTCCCTGCCATGGGCCCCTCCCAGGCCTTATCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR-3UTR TCA 90 bp CCAGCTAGCTGCCCAGCTGAATCTTGGGGGCCATCAGAGTACACAGATAAGGTAGGAGGTGGACAGTTTTaGAGCACTAGTCAGGAGTTT +
Preference number: 2 (lower is better)
Translates to: PASCPAESWGPSEYTDKVGGGQF*STSQEF
Trigger: AAACTCCTGACTAGTGCTTCAAAACTGTCCACCTCC...TACCTTATCTGTGTACTCTGATGGCCCCCAAGATTCAGCTGGGCAGCTAGCTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR-3UTR GCA 90 bp GTATGTAATACTACTTCAGAGCGGGAAGACCGGACTCAGACTAGGGACCAGGAGTCTCCAAGAACAGCCTaGCTTCTGGTTGCTGCTCTA +
Preference number: 2 (lower is better)
Translates to: VCNTTSEREDRTQTRDQESPRTA*LLVAAL
Trigger: TAGAGCAGCAACCAGAAGGCAGGCTGTTCTTGGAGA...CTCCTGGTCCCTAGTCTGAGTCCGGTCTTCCCGCTCTGAAGTAGTATTACATAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR-3UTR CCA 90 bp CCAGCTAGCTGCCCAGCTGAATCTTGGGGGCCATCAGAGTACACAGATAAGGTAAGGAGTTGGGGGATCTaGAAAGCAGCAGGAATTTTG +
Preference number: 2 (lower is better)
Translates to: PASCPAESWGPSEYTDKVRSWGI*KAAGIL
Trigger: CAAAATTCCTGCTGCTTTCCAGATCCCCCAACTCCT...TACCTTATCTGTGTACTCTGATGGCCCCCAAGATTCAGCTGGGCAGCTAGCTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR-3UTR CCA 90 bp TGGCTTAGTGAGAGGCTTGGTTTGGTGGTCTGCACCAGATCCTGTCTTTCTGACGAGCAGTCATTTCTCTaGGATGAGGCTGTGTTCTCT +
Preference number: 2 (lower is better)
Translates to: WLSERLGLVVCTRSCLSDEQSFL*DEAVFS
Trigger: AGAGAACACAGCCTCATCCCAGAGAAATGACTGCTC...GTCAGAAAGACAGGATCTGGTGCAGACCACCAAACCAAGCCTCTCACTAAGCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR-3UTR CCA 90 bp AGGGATAAGGCCTGGGAGGGGCCCATGGCAGGGAATCACTGGAAAGTTTCCTTGTGTAGACAGAGGAACTaGGATGGATATATTTGTGAC +
Preference number: 2 (lower is better)
Translates to: RDKAWEGPMAGNHWKVSLCRQRN*DGYICD
Trigger: GTCACAAATATATCCATCCCAGTTCCTCTGTCTACA...CAAGGAAACTTTCCAGTGATTCCCTGCCATGGGCCCCTCCCAGGCCTTATCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR-3UTR CCA 90 bp TGGCTTAGTGAGAGGCTTGGTTTGGTGGTCTGCACCAGATCCTGTCTTTCTGACAGGGCTTCAAAGGGATaGTACCCTGCAATAGCAAAG +
Preference number: 2 (lower is better)
Translates to: WLSERLGLVVCTRSCLSDRASKG*YPAIAK
Trigger: CTTTGCTATTGCAGGGTACCATCCCTTTGAAGCCCT...GTCAGAAAGACAGGATCTGGTGCAGACCACCAAACCAAGCCTCTCACTAAGCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR-3UTR TCA 90 bp AGAACACAGGGTCATTTTTCTACTGCTAATCTCGTTTCAGAGCAGCACCTGTTTCCCCTGTCTTCCACCTaGCAGGAGCACAAGACTCTG +
Preference number: 2 (lower is better)
Translates to: RTQGHFSTANLVSEQHLFPLSST*QEHKTL
Trigger: CAGAGTCTTGTGCTCCTGTCAGGTGGAAGACAGGGG...AAACAGGTGCTGCTCTGAAACGAGATTAGCAGTAGAAAAATGACCCTGTGTTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR-3UTR GCA 90 bp GGAGTTTCCACAGCTGGAGCTGTAGTGTATGTAATACTACTTCAGAGCGGGAAGAGCCTGCCTTCTGGTTaGTGCTCTAAAGTGATGTGG +
Preference number: 2 (lower is better)
Translates to: GVSTAGAVVYVILLQSGKSLPSG*CSKVMW
Trigger: CCACATCACTTTAGAGCAGCAACCAGAAGGCAGGCT...CTTCCCGCTCTGAAGTAGTATTACATACACTACAGCTCCAGCTGTGGAAACTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR-3UTR CCA 90 bp TGGCTTAGTGAGAGGCTTGGTTTGGTGGTCTGCACCAGATCCTGTCTTTCTGACGGAGCTAGCTTCTCTTaGGCTTTGTGCTTAATGTCT +
Preference number: 2 (lower is better)
Translates to: WLSERLGLVVCTRSCLSDGASFS*ALCLMS
Trigger: AGACATTAAGCACAAAGCCCAAGAGAAGCTAGCTCC...GTCAGAAAGACAGGATCTGGTGCAGACCACCAAACCAAGCCTCTCACTAAGCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR CAA 90 bp CTGAGCATTTATCTGTGCTCACATCAGAGGGGGATGTCTCCACACTaGAAGACCTTGTCTTCGCAATTACAGAGGAAACAGCTCCCTACT +
Preference number: 2 (lower is better)
Translates to: LSIYLCSHQRGMSPH*KTLSSQLQRKQLPT
Trigger: AGTAGGGAGCTGTTTCCTCTGTAATTGCGAAGACAAGGTCTTCAAGTGTGGAGACATCCCCCTCTGATGTGAGCACAGATAAATGCTCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR-3UTR TCA 90 bp CTCTTGGGCTTTGTGCTTAATGTCTCCCACCACCCCACTTTCCCAAAGAAGTTAGTCATTTCTCTGGGATaGGGCTGTGTTCTCTCAGTT +
Preference number: 2 (lower is better)
Translates to: LLGFVLNVSHHPTFPKKLVISLG*GCVLSV
Trigger: AACTGAGAGAACACAGCCTCATCCCAGAGAAATGAC...TAACTTCTTTGGGAAAGTGGGGTGGTGGGAGACATTAAGCACAAAGCCCAAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR-3UTR TCA 90 bp GGAGTTTCCACAGCTGGAGCTGTAGTGTATGTAATACTACTTCAGAGCGGGAAGCAGCAGGAATTTTGGTaGGGAAGCAGGTTCAGTTTC +
Preference number: 2 (lower is better)
Translates to: GVSTAGAVVYVILLQSGKQQEFW*GSRFSF
Trigger: GAAACTGAACCTGCTTCCTCACCAAAATTCCTGCTG...CTTCCCGCTCTGAAGTAGTATTACATACACTACAGCTCCAGCTGTGGAAACTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR-3UTR TCA 90 bp GGTGGCTTAGTGAGAGGCTTGGTTTGGTGGTCTGCACCAGATCCTGTCTTTCTGCACTTTTTCCTAACATaGCTTTGTAGCTCAGGAGAA +
Preference number: 2 (lower is better)
Translates to: GGLVRGLVWWSAPDPVFLHFFLT*LCSSGE
Trigger: TTCTCCTGAGCTACAAAGTCATGTTAGGAAAAAGTG...CAGAAAGACAGGATCTGGTGCAGACCACCAAACCAAGCCTCTCACTAAGCCACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR-3UTR GCA 90 bp GTATGTAATACTACTTCAGAGCGGGAAGACCGGACTCAGACTAGGGACCAGGAGTCTTTCTCTCTCTCTTaGAGTCCAAAGGGCAAAAAC +
Preference number: 2 (lower is better)
Translates to: VCNTTSEREDRTQTRDQESFSLS*SPKGKN
Trigger: GTTTTTGCCCTTTGGACTGCAAGAGAGAGAGAAAGA...CTCCTGGTCCCTAGTCTGAGTCCGGTCTTCCCGCTCTGAAGTAGTATTACATAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR-3UTR TCA 90 bp AGAACACAGGGTCATTTTTCTACTGCTAATCTCGTTTCAGAGCAGCACCTGTTTCAGGGCCCAAACCACTaGGGAGATGTGGAATCTTGT +
Preference number: 2 (lower is better)
Translates to: RTQGHFSTANLVSEQHLFQGPNH*GDVESC
Trigger: ACAAGATTCCACATCTCCTCAGTGGTTTGGGCCCTG...AAACAGGTGCTGCTCTGAAACGAGATTAGCAGTAGAAAAATGACCCTGTGTTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR-3UTR GCA 90 bp AGTAAGGGTAATGGGTTAGATAAGATGTTATCTCCAACATCTACCTCCACGAATTCTAATTTCTCCACGTaGTGCCAGTTCCCAGGGCCC +
Preference number: 2 (lower is better)
Translates to: SKGNGLDKMLSPTSTSTNSNFST*CQFPGP
Trigger: GGGCCCTGGGAACTGGCAGCACGTGGAGAAATTAGA...ATTCGTGGAGGTAGATGTTGGAGATAACATCTTATCTAACCCATTACCCTTACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR-3UTR GCA 90 bp GGAGTTTCCACAGCTGGAGCTGTAGTGTATGTAATACTACTTCAGAGCGGGAAGCTAAGCTGGTATCTGTaGATCTTTCTCTCTCTCTTG +
Preference number: 2 (lower is better)
Translates to: GVSTAGAVVYVILLQSGKLSWYL*IFLSLL
Trigger: CAAGAGAGAGAGAAAGATGCACAGATACCAGCTTAG...CTTCCCGCTCTGAAGTAGTATTACATACACTACAGCTCCAGCTGTGGAAACTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR CAA 90 bp GAAAGGATCATTTCACAGGGTACCCTCTTACCCTTCTATGTTTCTTaGACCTTGAGATGTGTGGAGAGAGTAGGCTTAGTGGAGACTACA +
Preference number: 2 (lower is better)
Translates to: ERIISQGTLLPFYVS*TLRCVERVGLVETT
Trigger: TGTAGTCTCCACTAAGCCTACTCTCTCCACACATCTCAAGGTCAAAGAAACATAGAAGGGTAAGAGGGTACCCTGTGAAATGATCCTTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR-3UTR TCA 90 bp GGAGTTTCCACAGCTGGAGCTGTAGTGTATGTAATACTACTTCAGAGCGGGAAGCTAACTACCAAAGCCTaGTTATATACATGGAGGGTT +
Preference number: 2 (lower is better)
Translates to: GVSTAGAVVYVILLQSGKLTTKA*LYTWRV
Trigger: AACCCTCCATGTATATAATCAGGCTTTGGTAGTTAG...CTTCCCGCTCTGAAGTAGTATTACATACACTACAGCTCCAGCTGTGGAAACTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR-3UTR GCA 90 bp AGAACACAGGGTCATTTTTCTACTGCTAATCTCGTTTCAGAGCAGCACCTGTTTGAACAGAGAAATGCCTaGCACCTCAAAGCCTTATCC +
Preference number: 2 (lower is better)
Translates to: RTQGHFSTANLVSEQHLFEQRNA*HLKALS
Trigger: GGATAAGGCTTTGAGGTGGCAGGCATTTCTCTGTTC...AAACAGGTGCTGCTCTGAAACGAGATTAGCAGTAGAAAAATGACCCTGTGTTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR CAA 90 bp ATCATTTCACAGGGTACCCTCTTACCCTTCTATGTTTCTTTGACCTaGAGATGTGTGGAGAGAGTAGGCTTAGTGGAGACTACATGTACA +
Preference number: 2 (lower is better)
Translates to: IISQGTLLPFYVSLT*RCVERVGLVETTCT
Trigger: TGTACATGTAGTCTCCACTAAGCCTACTCTCTCCACACATCTCAAGGTCAAAGAAACATAGAAGGGTAAGAGGGTACCCTGTGAAATGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR-3UTR GCA 90 bp GTAGGCTTAGTGGAGACTACATGTACAAGTATAAGATGGGGAAATGAGGAAGTAAGGAGAACAGAGAAATaGCTGCCACCTCAAAGCCTT +
Preference number: 2 (lower is better)
Translates to: VGLVETTCTSIRWGNEEVRRTEK*LPPQSL
Trigger: AAGGCTTTGAGGTGGCAGGCATTTCTCTGTTCTCCT...TACTTCCTCATTTCCCCATCTTATACTTGTACATGTAGTCTCCACTAAGCCTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR-3UTR TCA 90 bp GTAGGCTTAGTGGAGACTACATGTACAAGTATAAGATGGGGAAATGAGGAAGTAGAGGGAACAAAAAGCTaGCTTGTTTCTAACGGGAAG +
Preference number: 2 (lower is better)
Translates to: VGLVETTCTSIRWGNEEVEGTKS*LVSNGK
Trigger: CTTCCCGTTAGAAACAAGTCAGCTTTTTGTTCCCTC...TACTTCCTCATTTCCCCATCTTATACTTGTACATGTAGTCTCCACTAAGCCTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR-3UTR CCA 90 bp GTAGGCTTAGTGGAGACTACATGTACAAGTATAAGATGGGGAAATGAGGAAGTAAAAAACAGGAACAGATaGGAGCATGGCTCTACTCAC +
Preference number: 2 (lower is better)
Translates to: VGLVETTCTSIRWGNEEVKNRNR*EHGSTH
Trigger: GTGAGTAGAGCCATGCTCCCATCTGTTCCTGTTTTT...TACTTCCTCATTTCCCCATCTTATACTTGTACATGTAGTCTCCACTAAGCCTAC
42% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR-3UTR CCA 90 bp GTAGGCTTAGTGGAGACTACATGTACAAGTATAAGATGGGGAAATGAGGAAGTAGTGTCCACTCTGACTTaGGCATATAATGCTTGGATA +
Preference number: 2 (lower is better)
Translates to: VGLVETTCTSIRWGNEEVVSTLT*AYNAWI
Trigger: TATCCAAGCATTATATGCCCAAGTCAGAGTGGACAC...TACTTCCTCATTTCCCCATCTTATACTTGTACATGTAGTCTCCACTAAGCCTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR-3UTR TCA 90 bp AGAACACAGGGTCATTTTTCTACTGCTAATCTCGTTTCAGAGCAGCACCTGTTTACCTCTGTTATAAAATaGAAAAAGTGGAAAGGGCAG +
Preference number: 2 (lower is better)
Translates to: RTQGHFSTANLVSEQHLFTSVIK*KKWKGQ
Trigger: CTGCCCTTTCCACTTTTTTCATTTTATAACAGAGGT...AAACAGGTGCTGCTCTGAAACGAGATTAGCAGTAGAAAAATGACCCTGTGTTCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR GCA 72 bp ATCCCGTGCTTGGGGTCCCTCCCAGGTGTGTGTTGCTaGTCTGGCAGCAGACCAGGGGCTAAGGTAACAGAG +
Preference number: 3 (lower is better)
Translates to: IPCLGSLPGVCC*SGSRPGAKVTE
Trigger: CTCTGTTACCTTAGCCCCTGGTCTGCTGCCAGAGCAGCAACACACACCTGGGAGGGACCCCAAGCACGGGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR TCA 72 bp GAGCCTGTGCTGGTGCTAGAACCCCTGTCTTCCACCTaGCAGGAGCACAAGACTCTGGTGGGGCAAGTGCCT +
Preference number: 3 (lower is better)
Translates to: EPVLVLEPLSST*QEHKTLVGQVP
Trigger: AGGCACTTGCCCCACCAGAGTCTTGTGCTCCTGTCAGGTGGAAGACAGGGGTTCTAGCACCAGCACAGGCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR CCA 72 bp TGGCTGCTGTGCTGTCTTCAGACTTTATCCCGTGCTTaGGGTCCCTCCCAGGTGTGTGTTGCTGCTCTGGCA +
Preference number: 3 (lower is better)
Translates to: WLLCCLQTLSRA*GPSQVCVAALA
Trigger: TGCCAGAGCAGCAACACACACCTGGGAGGGACCCCAAGCACGGGATAAAGTCTGAAGACAGCACAGCAGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR GCA 72 bp GGTATGGCTGCTGTGCTGTCTTCAGACTTTATCCCGTaGTTGGGGTCCCTCCCAGGTGTGTGTTGCTGCTCT +
Preference number: 3 (lower is better)
Translates to: GMAAVLSSDFIP*LGSLPGVCCCS
Trigger: AGAGCAGCAACACACACCTGGGAGGGACCCCAAGCACGGGATAAAGTCTGAAGACAGCACAGCAGCCATACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR CCA 72 bp GATGGCACCTCCAGCATCACCTCGAATGAGCCAGTCTaGCCCATGAAGCTGACTTCATCTGGGCACTTGGTG +
Preference number: 3 (lower is better)
Translates to: DGTSSITSNEPV*PMKLTSSGHLV
Trigger: CACCAAGTGCCCAGATGAAGTCAGCTTCATGGGCCAGACTGGCTCATTCGAGGTGATGCTGGAGGTGCCATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR CCA 72 bp GAGCATGGGCAGGGTGGCTTAGTGAGAGGCTTGGTTTaGTGGTCTGCACCAGATCCTGTCTTTCTGACTAGG +
Preference number: 3 (lower is better)
Translates to: EHGQGGLVRGLV*WSAPDPVFLTR
Trigger: CCTAGTCAGAAAGACAGGATCTGGTGCAGACCACCAAACCAAGCCTCTCACTAAGCCACCCTGCCCATGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR CCA 72 bp CCCTGGAGATCATTAAGAGCAAGAGCATGGGCAGGGTaGCTTAGTGAGAGGCTTGGTTTGGTGGTCTGCACC +
Preference number: 3 (lower is better)
Translates to: PWRSLRARAWAG*LSERLGLVVCT
Trigger: GGTGCAGACCACCAAACCAAGCCTCTCACTAAGCCACCCTGCCCATGCTCTTGCTCTTAATGATCTCCAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR TCA 72 bp CTGATGGTAAGATGGCACCTCCAGCATCACCTCGAATaGGCCAGTCTGGCCCATGAAGCTGACTTCATCTGG +
Preference number: 3 (lower is better)
Translates to: LMVRWHLQHHLE*ASLAHEADFIW
Trigger: CCAGATGAAGTCAGCTTCATGGGCCAGACTGGCTCATTCGAGGTGATGCTGGAGGTGCCATCTTACCATCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR CCA 72 bp CATGGGCAGGGTGGCTTAGTGAGAGGCTTGGTTTGGTaGTCTGCACCAGATCCTGTCTTTCTGACTAGGTGT +
Preference number: 3 (lower is better)
Translates to: HGQGGLVRGLVW*SAPDPVFLTRC
Trigger: ACACCTAGTCAGAAAGACAGGATCTGGTGCAGACCACCAAACCAAGCCTCTCACTAAGCCACCCTGCCCATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR-3UTR CAA 90 bp AGGGATAAGGCCTGGGAGGGGCCCATGGCAGGGAATCACTGGAAAGTTTCCTTGAAAGCAGCAGGAATTTaGGTGAGGAAGCAGGTTCAG +
Preference number: 3 (lower is better)
Translates to: RDKAWEGPMAGNHWKVSLKAAGI*VRKQVQ
Trigger: CTGAACCTGCTTCCTCACCAAAATTCCTGCTGCTTT...CAAGGAAACTTTCCAGTGATTCCCTGCCATGGGCCCCTCCCAGGCCTTATCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR GCA 72 bp CTGAATGTCTCCAAGAACAGCCTGCCTTCTGGTTGCTaGTCTAAAGTGATGTGGCAGGCTCCAAGGTTACCC +
Preference number: 3 (lower is better)
Translates to: LNVSKNSLPSGC*SKVMWQAPRLP
Trigger: GGGTAACCTTGGAGCCTGCCACATCACTTTAGAGCAGCAACCAGAAGGCAGGCTGTTCTTGGAGACATTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR CCA 72 bp CTGCCAGTTCCCAGGGCCCAAACCACTGAGGAGATGTaGAATCTTGTTTATGGTGGTAATGACAGTGAGGGG +
Preference number: 3 (lower is better)
Translates to: LPVPRAQTTEEM*NLVYGGNDSEG
Trigger: CCCCTCACTGTCATTACCACCATAAACAAGATTCCACATCTCCTCAGTGGTTTGGGCCCTGGGAACTGGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR CCA 72 bp TGGAGGGTTCATGAGTTCTCGGGAGCTAGCTTCTCTTaGGCTTTGTGCTTAATGTCTCCCACCACCCCACTT +
Preference number: 3 (lower is better)
Translates to: WRVHEFSGASFS*ALCLMSPTTPL
Trigger: AAGTGGGGTGGTGGGAGACATTAAGCACAAAGCCCAAGAGAAGCTAGCTCCCGAGAACTCATGAACCCTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR CCA 72 bp CACATGAGTCCCTGGAGATCATTAAGAGCAAGAGCATaGGCAGGGTGGCTTAGTGAGAGGCTTGGTTTGGTG +
Preference number: 3 (lower is better)
Translates to: HMSPWRSLRARA*AGWLSERLGLV
Trigger: CACCAAACCAAGCCTCTCACTAAGCCACCCTGCCCATGCTCTTGCTCTTAATGATCTCCAGGGACTCATGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR-3UTR CAA 90 bp TGGCTTAGTGAGAGGCTTGGTTTGGTGGTCTGCACCAGATCCTGTCTTTCTGACGGGATGTCTCCACACTaGAAGACCTTGTCTTCGCAA +
Preference number: 3 (lower is better)
Translates to: WLSERLGLVVCTRSCLSDGMSPH*KTLSSQ
Trigger: TTGCGAAGACAAGGTCTTCAAGTGTGGAGACATCCC...GTCAGAAAGACAGGATCTGGTGCAGACCACCAAACCAAGCCTCTCACTAAGCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR TCA 72 bp CCTGTCTTTCTGACTAGGTGTGGAGGTGGACAGTTTTaGAGCACTAGTCAGGAGTTTCCACAGCTGGAGCTG +
Preference number: 3 (lower is better)
Translates to: PVFLTRCGGGQF*STSQEFPQLEL
Trigger: CAGCTCCAGCTGTGGAAACTCCTGACTAGTGCTTCAAAACTGTCCACCTCCACACCTAGTCAGAAAGACAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR GCA 72 bp CATGAGTTCTCGGGAGCTAGCTTCTCTTGGGCTTTGTaGTTAATGTCTCCCACCACCCCACTTTCCCAAAGA +
Preference number: 3 (lower is better)
Translates to: HEFSGASFSWAL*LMSPTTPLSQR
Trigger: TCTTTGGGAAAGTGGGGTGGTGGGAGACATTAAGCACAAAGCCCAAGAGAAGCTAGCTCCCGAGAACTCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR-3UTR CAA 90 bp GTAGGCTTAGTGGAGACTACATGTACAAGTATAAGATGGGGAAATGAGGAAGTACCTCCCAGGTGTGTGTaGCTGCTCTGGCAGCAGACC +
Preference number: 3 (lower is better)
Translates to: VGLVETTCTSIRWGNEEVPPRCV*LLWQQT
Trigger: GGTCTGCTGCCAGAGCAGCAACACACACCTGGGAGG...TACTTCCTCATTTCCCCATCTTATACTTGTACATGTAGTCTCCACTAAGCCTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR TCA 72 bp GCTTGGTTTGGTGGTCTGCACCAGATCCTGTCTTTCTaGCTAGGTGTGGAGGTGGACAGTTTTGAAGCACTA +
Preference number: 3 (lower is better)
Translates to: AWFGGLHQILSF*LGVEVDSFEAL
Trigger: TAGTGCTTCAAAACTGTCCACCTCCACACCTAGTCAGAAAGACAGGATCTGGTGCAGACCACCAAACCAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR TCA 72 bp AAATTCAACAGAGCAACGCCAATGGAACAAAAGCTATaGACAGCAACACTGTCCCTCCAGCCCGAGCCTCCA +
Preference number: 3 (lower is better)
Translates to: KFNRATPMEQKL*TATLSLQPEPP
Trigger: TGGAGGCTCGGGCTGGAGGGACAGTGTTGCTGTTCATAGCTTTTGTTCCATTGGCGTTGCTCTGTTGAATTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR TCA 72 bp ATCTGTGCTCACATCAGAGGGGGATGTCTCCACACTTaGAGACCTTGTCTTCGCAATTACAGAGGAAACAGC +
Preference number: 3 (lower is better)
Translates to: ICAHIRGGCLHT*RPCLRNYRGNS
Trigger: GCTGTTTCCTCTGTAATTGCGAAGACAAGGTCTTCAAGTGTGGAGACATCCCCCTCTGATGTGAGCACAGAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR-3UTR CAA 90 bp CCAGCTAGCTGCCCAGCTGAATCTTGGGGGCCATCAGAGTACACAGATAAGGTATATGTTTCTTTGACCTaGAGATGTGTGGAGAGAGTA +
Preference number: 3 (lower is better)
Translates to: PASCPAESWGPSEYTDKVYVSLT*RCVERV
Trigger: TACTCTCTCCACACATCTCAAGGTCAAAGAAACATA...TACCTTATCTGTGTACTCTGATGGCCCCCAAGATTCAGCTGGGCAGCTAGCTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR-3UTR CAA 90 bp AGAACACAGGGTCATTTTTCTACTGCTAATCTCGTTTCAGAGCAGCACCTGTTTAGAAAGGACAAGGAGTaGGGGGATCTGGAAAGCAGC +
Preference number: 3 (lower is better)
Translates to: RTQGHFSTANLVSEQHLFRKDKE*GDLESS
Trigger: GCTGCTTTCCAGATCCCCCAACTCCTTGTCCTTTCT...AAACAGGTGCTGCTCTGAAACGAGATTAGCAGTAGAAAAATGACCCTGTGTTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR-3UTR CAA 90 bp GGAGTTTCCACAGCTGGAGCTGTAGTGTATGTAATACTACTTCAGAGCGGGAAGGAACAAAAAGCTGACTaGTTTCTAACGGGAAGAGGG +
Preference number: 3 (lower is better)
Translates to: GVSTAGAVVYVILLQSGKEQKAD*FLTGRG
Trigger: CCCTCTTCCCGTTAGAAACAAGTCAGCTTTTTGTTC...CTTCCCGCTCTGAAGTAGTATTACATACACTACAGCTCCAGCTGTGGAAACTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR TCA 72 bp CGCAATTACAGAGGAAACAGCTCCCTACTTCTTTCCTaGGATTCTAATTTCTCCACGTGCTGCCAGTTCCCA +
Preference number: 3 (lower is better)
Translates to: RNYRGNSSLLLS*DSNFSTCCQFP
Trigger: TGGGAACTGGCAGCACGTGGAGAAATTAGAATCTCAGGAAAGAAGTAGGGAGCTGTTTCCTCTGTAATTGCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR TCA 72 bp GAGCCACCTACCTTCCTGCTCTCAAACTGTCACTTTTaGCATTCTTGTTTCAAGCTCCCGATTAGCCTAAGC +
Preference number: 3 (lower is better)
Translates to: EPPTFLLSNCHF*HSCFKLPISLS
Trigger: GCTTAGGCTAATCGGGAGCTTGAAACAAGAATGTCAAAAGTGACAGTTTGAGAGCAGGAAGGTAGGTGGCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR TCA 72 bp CCTGCCACCTCAAAGCCTTATCCACTGTGTCCACTCTaGCTTGGGCATATAATGCTTGGATATGCTGTTTTA +
Preference number: 3 (lower is better)
Translates to: PATSKPYPLCPL*LGHIMLGYAVL
Trigger: TAAAACAGCATATCCAAGCATTATATGCCCAAGTCAGAGTGGACACAGTGGATAAGGCTTTGAGGTGGCAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR CCA 72 bp CACCTCAAAGCCTTATCCACTGTGTCCACTCTGACTTaGGCATATAATGCTTGGATATGCTGTTTTAGGGTC +
Preference number: 3 (lower is better)
Translates to: HLKALSTVSTLT*AYNAWICCFRV
Trigger: GACCCTAAAACAGCATATCCAAGCATTATATGCCCAAGTCAGAGTGGACACAGTGGATAAGGCTTTGAGGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR CCA 72 bp GACAGTTTTGAAGCACTAGTCAGGAGTTTCCACAGCTaGAGCTGTAGTGTATGTAATACTACTTCAGAGCGG +
Preference number: 3 (lower is better)
Translates to: DSFEALVRSFHS*SCSVCNTTSER
Trigger: CCGCTCTGAAGTAGTATTACATACACTACAGCTCCAGCTGTGGAAACTCCTGACTAGTGCTTCAAAACTGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR TCA 72 bp AAGGTTTGGAGGTCAGAGATGCTAACTACCAAAGCCTaGTTATATACATGGAGGGTTCATGAGTTCTCGGGA +
Preference number: 3 (lower is better)
Translates to: KVWRSEMLTTKA*LYTWRVHEFSG
Trigger: TCCCGAGAACTCATGAACCCTCCATGTATATAATCAGGCTTTGGTAGTTAGCATCTCTGACCTCCAAACCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR CCA 72 bp GTAGGCTTAGTGGAGACTACATGTACAAGTATAAGATaGGGAAATGAGGAAGTAGATGTGAGTCCTAAGCAG +
Preference number: 3 (lower is better)
Translates to: VGLVETTCTSIR*GNEEVDVSPKQ
Trigger: CTGCTTAGGACTCACATCTACTTCCTCATTTCCCCATCTTATACTTGTACATGTAGTCTCCACTAAGCCTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR CCA 72 bp GGAAGACTGAAATTAAATTCAACAGAGCAACGCCAATaGAACAAAAGCTATGAACAGCAACACTGTCCCTCC +
Preference number: 3 (lower is better)
Translates to: GRLKLNSTEQRQ*NKSYEQQHCPS
Trigger: GGAGGGACAGTGTTGCTGTTCATAGCTTTTGTTCCATTGGCGTTGCTCTGTTGAATTTAATTTCAGTCTTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR-3UTR CAA 90 bp AGTAAGGGTAATGGGTTAGATAAGATGTTATCTCCAACATCTACCTCCACGAATCTCAAACTGTCACTTTaGACATTCTTGTTTCAAGCT +
Preference number: 3 (lower is better)
Translates to: SKGNGLDKMLSPTSTSTNLKLSL*TFLFQA
Trigger: AGCTTGAAACAAGAATGTCAAAAGTGACAGTTTGAG...ATTCGTGGAGGTAGATGTTGGAGATAACATCTTATCTAACCCATTACCCTTACT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp CGTGCTTGGGGTCCCTCCCAGGTGTGTGTTGCTGCTCTGGCAGCAGACCAGGGGAGTCCCCGCTGCTGCTaGTGCTGCTGCTCCAGGCTC +
Preference number: 4 (lower is better)
Translates to: RAWGPSQVCVAALAADQGSPRCC*CCCSRL
Trigger: GAGCCTGGAGCAGCAGCAGCAGCAGCAGCGGGGACT...CCCCTGGTCTGCTGCCAGAGCAGCAACACACACCTGGGAGGGACCCCAAGCACG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp CGTGCTTGGGGTCCCTCCCAGGTGTGTGTTGCTGCTCTGGCAGCAGACCAGGGGCTGTCCCAGGCTCCTTaGCCTTGCCGGGCCCTGACT +
Preference number: 4 (lower is better)
Translates to: RAWGPSQVCVAALAADQGLSQAP*PCRALT
Trigger: AGTCAGGGCCCGGCAAGGCCAAGGAGCCTGGGACAG...CCCCTGGTCTGCTGCCAGAGCAGCAACACACACCTGGGAGGGACCCCAAGCACG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp CGTGCTTGGGGTCCCTCCCAGGTGTGTGTTGCTGCTCTGGCAGCAGACCAGGGGGTGGACATCAGGCGCTaGGAAGGGGATGTGCGGGGC +
Preference number: 4 (lower is better)
Translates to: RAWGPSQVCVAALAADQGVDIRR*EGDVRG
Trigger: GCCCCGCACATCCCCTTCCCAGCGCCTGATGTCCAC...CCCCTGGTCTGCTGCCAGAGCAGCAACACACACCTGGGAGGGACCCCAAGCACG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR TCA 90 bp CGTGCTTGGGGTCCCTCCCAGGTGTGTGTTGCTGCTCTGGCAGCAGACCAGGGGGCTGCTGCCTCCAATTaGAGGGCTGGGGGCATTGTC +
Preference number: 4 (lower is better)
Translates to: RAWGPSQVCVAALAADQGAAASN*RAGGIV
Trigger: GACAATGCCCCCAGCCCTTCAATTGGAGGCAGCAGC...CCCCTGGTCTGCTGCCAGAGCAGCAACACACACCTGGGAGGGACCCCAAGCACG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp CGTGCTTGGGGTCCCTCCCAGGTGTGTGTTGCTGCTCTGGCAGCAGACCAGGGGCAGCTGAGGTCTGCATaGAGGGCGGGCTCTTCTCCA +
Preference number: 4 (lower is better)
Translates to: RAWGPSQVCVAALAADQGQLRSA*RAGSSP
Trigger: TGGAGAAGAGCCCGCCCTCCATGCAGACCTCAGCTG...CCCCTGGTCTGCTGCCAGAGCAGCAACACACACCTGGGAGGGACCCCAAGCACG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp CGTGCTTGGGGTCCCTCCCAGGTGTGTGTTGCTGCTCTGGCAGCAGACCAGGGGTCTCCTGCGCGACCCTaGACCTCTTTCTTGCTGGCT +
Preference number: 4 (lower is better)
Translates to: RAWGPSQVCVAALAADQGSPARP*TSFLLA
Trigger: AGCCAGCAAGAAAGAGGTGCAGGGTCGCGCAGGAGA...CCCCTGGTCTGCTGCCAGAGCAGCAACACACACCTGGGAGGGACCCCAAGCACG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp CGTGCTTGGGGTCCCTCCCAGGTGTGTGTTGCTGCTCTGGCAGCAGACCAGGGGTTTGCTGTCAGAGGCTaGGGCTGCCTCACTGACAGG +
Preference number: 4 (lower is better)
Translates to: RAWGPSQVCVAALAADQGFAVRG*GCLTDR
Trigger: CCTGTCAGTGAGGCAGCCGCAGCCTCTGACAGCAAA...CCCCTGGTCTGCTGCCAGAGCAGCAACACACACCTGGGAGGGACCCCAAGCACG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp CGTGCTTGGGGTCCCTCCCAGGTGTGTGTTGCTGCTCTGGCAGCAGACCAGGGGGACGGCCTTTGCTATTaGCTCCTGCTCGGGTCTTGC +
Preference number: 4 (lower is better)
Translates to: RAWGPSQVCVAALAADQGDGLCY*LLLGSC
Trigger: GCAAGACCCGAGCAGGAGCCAATAGCAAAGGCCGTC...CCCCTGGTCTGCTGCCAGAGCAGCAACACACACCTGGGAGGGACCCCAAGCACG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp TGGCTTAGTGAGAGGCTTGGTTTGGTGGTCTGCACCAGATCCTGTCTTTCTGACGCTGGGAAGGGGATGTaGGGGGCCGGTCGGCACTCC +
Preference number: 4 (lower is better)
Translates to: WLSERLGLVVCTRSCLSDAGKGM*GAGRHS
Trigger: GGAGTGCCGACCGGCCCCGCACATCCCCTTCCCAGC...GTCAGAAAGACAGGATCTGGTGCAGACCACCAAACCAAGCCTCTCACTAAGCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp CGTGCTTGGGGTCCCTCCCAGGTGTGTGTTGCTGCTCTGGCAGCAGACCAGGGGTTTCCAAGTCACTGGTaGGGGAGTCACAGAACCTTG +
Preference number: 4 (lower is better)
Translates to: RAWGPSQVCVAALAADQGFPSHW*GSHRTL
Trigger: CAAGGTTCTGTGACTCCCCCACCAGTGACTTGGAAA...CCCCTGGTCTGCTGCCAGAGCAGCAACACACACCTGGGAGGGACCCCAAGCACG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp CGTGCTTGGGGTCCCTCCCAGGTGTGTGTTGCTGCTCTGGCAGCAGACCAGGGGAGATGTCCAGGGCTTTaGACTCTGAGCTGGCTTTAC +
Preference number: 4 (lower is better)
Translates to: RAWGPSQVCVAALAADQGRCPGL*TLSWLY
Trigger: GTAAAGCCAGCTCAGAGTCCAAAGCCCTGGACATCT...CCCCTGGTCTGCTGCCAGAGCAGCAACACACACCTGGGAGGGACCCCAAGCACG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR TCA 90 bp AGGGATAAGGCCTGGGAGGGGCCCATGGCAGGGAATCACTGGAAAGTTTCCTTGGCCAGCTACACTGCGTaGCGCCTTAGCAGCCTTCTC +
Preference number: 4 (lower is better)
Translates to: RDKAWEGPMAGNHWKVSLASYTA*RLSSLL
Trigger: GAGAAGGCTGCTAAGGCGTCACGCAGTGTAGCTGGC...CAAGGAAACTTTCCAGTGATTCCCTGCCATGGGCCCCTCCCAGGCCTTATCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR TCA 90 bp AATTTCTCCACGTGCTGCCAGTTCCCAGGGCCCAAACCACTGAGGAGATGTGGACCTGGCTGCTTGAGGTaGGAGTCCCTGGGCTGGACT +
Preference number: 4 (lower is better)
Translates to: NFSTCCQFPGPKPLRRCGPGCLR*ESLGWT
Trigger: AGTCCAGCCCAGGGACTCTCACCTCAAGCAGCCAGG...TCCACATCTCCTCAGTGGTTTGGGCCCTGGGAACTGGCAGCACGTGGAGAAATT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp GTATGTAATACTACTTCAGAGCGGGAAGACCGGACTCAGACTAGGGACCAGGAGCCAGGCCTCCCGCACTaGCACCATCTCCTGCGCGAC +
Preference number: 4 (lower is better)
Translates to: VCNTTSEREDRTQTRDQEPGLPH*HHLLRD
Trigger: GTCGCGCAGGAGATGGTGCCAGTGCGGGAGGCCTGG...CTCCTGGTCCCTAGTCTGAGTCCGGTCTTCCCGCTCTGAAGTAGTATTACATAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp CCAGCTAGCTGCCCAGCTGAATCTTGGGGGCCATCAGAGTACACAGATAAGGTAGAGTGGGTTCTACCTTaGTCCCAGGGAGGGGCCCGG +
Preference number: 4 (lower is better)
Translates to: PASCPAESWGPSEYTDKVEWVLP*SQGGAR
Trigger: CCGGGCCCCTCCCTGGGACCAAGGTAGAACCCACTC...TACCTTATCTGTGTACTCTGATGGCCCCCAAGATTCAGCTGGGCAGCTAGCTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp AATTTCTCCACGTGCTGCCAGTTCCCAGGGCCCAAACCACTGAGGAGATGTGGAAGCTCACACTGGGGCTaGCACGGGCCTTGTCAGCGT +
Preference number: 4 (lower is better)
Translates to: NFSTCCQFPGPKPLRRCGSSHWG*HGPCQR
Trigger: ACGCTGACAAGGCCCGTGCCAGCCCCAGTGTGAGCT...TCCACATCTCCTCAGTGGTTTGGGCCCTGGGAACTGGCAGCACGTGGAGAAATT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR TCA 90 bp CCAGCTAGCTGCCCAGCTGAATCTTGGGGGCCATCAGAGTACACAGATAAGGTAGAGGGGCCCGGTGGCTaGGCCCATGGAATTTGTACG +
Preference number: 4 (lower is better)
Translates to: PASCPAESWGPSEYTDKVEGPGG*AHGICT
Trigger: CGTACAAATTCCATGGGCTCAGCCACCGGGCCCCTC...TACCTTATCTGTGTACTCTGATGGCCCCCAAGATTCAGCTGGGCAGCTAGCTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp GGTGGCTTAGTGAGAGGCTTGGTTTGGTGGTCTGCACCAGATCCTGTCTTTCTGCCTCAGACGCCTCCTTaGCTAGGTGGCTGGCCTCAC +
Preference number: 4 (lower is better)
Translates to: GGLVRGLVWWSAPDPVFLPQTPP*LGGWPH
Trigger: GTGAGGCCAGCCACCTAGGCAAGGAGGCGTCTGAGG...CAGAAAGACAGGATCTGGTGCAGACCACCAAACCAAGCCTCTCACTAAGCCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp AATTTCTCCACGTGCTGCCAGTTCCCAGGGCCCAAACCACTGAGGAGATGTGGATCCTCCCAAGGGAACTaGCTGGAGGACCCCAGGATC +
Preference number: 4 (lower is better)
Translates to: NFSTCCQFPGPKPLRRCGSSQGN*LEDPRI
Trigger: GATCCTGGGGTCCTCCAGCCAGTTCCCTTGGGAGGA...TCCACATCTCCTCAGTGGTTTGGGCCCTGGGAACTGGCAGCACGTGGAGAAATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR CAA 72 bp ATGGCTGCTGTGCTGTCTTCAGACTTTATCCCGTGCTaGGGGTCCCTCCCAGGTGTGTGTTGCTGCTCTGGC +
Preference number: 4 (lower is better)
Translates to: MAAVLSSDFIPC*GSLPGVCCCSG
Trigger: GCCAGAGCAGCAACACACACCTGGGAGGGACCCCAAGCACGGGATAAAGTCTGAAGACAGCACAGCAGCCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR TCA 90 bp AGGGATAAGGCCTGGGAGGGGCCCATGGCAGGGAATCACTGGAAAGTTTCCTTGTCATCCGTGTGGGCGTaGGCTTGGTGGTACTTAAGC +
Preference number: 4 (lower is better)
Translates to: RDKAWEGPMAGNHWKVSLSSVWA*AWWYLS
Trigger: GCTTAAGTACCACCAAGCTCACGCCCACACGGATGA...CAAGGAAACTTTCCAGTGATTCCCTGCCATGGGCCCCTCCCAGGCCTTATCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR TCA 90 bp CTCTTGGGCTTTGTGCTTAATGTCTCCCACCACCCCACTTTCCCAAAGAAGTTATGGGCCGCTGCTGGATaGCGGAGGGCTGCTGACTGG +
Preference number: 4 (lower is better)
Translates to: LLGFVLNVSHHPTFPKKLWAAAG*RRAADW
Trigger: CCAGTCAGCAGCCCTCCGTCATCCAGCAGCGGCCCA...TAACTTCTTTGGGAAAGTGGGGTGGTGGGAGACATTAAGCACAAAGCCCAAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR TCA 90 bp TGGCTTAGTGAGAGGCTTGGTTTGGTGGTCTGCACCAGATCCTGTCTTTCTGACAGCGTCCTCGCCACCTaGGACCTTGCTGCCATACGG +
Preference number: 4 (lower is better)
Translates to: WLSERLGLVVCTRSCLSDSVLAT*DLAAIR
Trigger: CCGTATGGCAGCAAGGTCTCAGGTGGCGAGGACGCT...GTCAGAAAGACAGGATCTGGTGCAGACCACCAAACCAAGCCTCTCACTAAGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp CCAGCTAGCTGCCCAGCTGAATCTTGGGGGCCATCAGAGTACACAGATAAGGTACTGCTCGGGTCTTGCTaGTGCTGCTGGTCCCTTTGC +
Preference number: 4 (lower is better)
Translates to: PASCPAESWGPSEYTDKVLLGSC*CCWSLC
Trigger: GCAAAGGGACCAGCAGCAGCAGCAAGACCCGAGCAG...TACCTTATCTGTGTACTCTGATGGCCCCCAAGATTCAGCTGGGCAGCTAGCTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp CCAGCTAGCTGCCCAGCTGAATCTTGGGGGCCATCAGAGTACACAGATAAGGTAGTTGCAGCTGAGGTCTaGATGGAGGGCGGGCTCTTC +
Preference number: 4 (lower is better)
Translates to: PASCPAESWGPSEYTDKVVAAEV*MEGGLF
Trigger: GAAGAGCCCGCCCTCCATGCAGACCTCAGCTGCAAC...TACCTTATCTGTGTACTCTGATGGCCCCCAAGATTCAGCTGGGCAGCTAGCTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp TGGCTTAGTGAGAGGCTTGGTTTGGTGGTCTGCACCAGATCCTGTCTTTCTGACTGGCACTGTCCACCTTaGCCTCCCCATCCTCCCCAG +
Preference number: 4 (lower is better)
Translates to: WLSERLGLVVCTRSCLSDWHCPP*PPHPPQ
Trigger: CTGGGGAGGATGGGGAGGGCAAGGTGGACAGTGCCA...GTCAGAAAGACAGGATCTGGTGCAGACCACCAAACCAAGCCTCTCACTAAGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp GTATGTAATACTACTTCAGAGCGGGAAGACCGGACTCAGACTAGGGACCAGGAGCAGGCTCCTTGGCCTTaGCGGGCCCTGACTTCACCA +
Preference number: 4 (lower is better)
Translates to: VCNTTSEREDRTQTRDQEQAPWP*RALTSP
Trigger: TGGTGAAGTCAGGGCCCGGCAAGGCCAAGGAGCCTG...CTCCTGGTCCCTAGTCTGAGTCCGGTCTTCCCGCTCTGAAGTAGTATTACATAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp CGTGCTTGGGGTCCCTCCCAGGTGTGTGTTGCTGCTCTGGCAGCAGACCAGGGGAAAGCCTTGATAATATaGGGAGTCTTTGCTCTGTGG +
Preference number: 4 (lower is better)
Translates to: RAWGPSQVCVAALAADQGKALII*GVFALW
Trigger: CCACAGAGCAAAGACTCCCCATATTATCAAGGCTTT...CCCCTGGTCTGCTGCCAGAGCAGCAACACACACCTGGGAGGGACCCCAAGCACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp GGTGGCTTAGTGAGAGGCTTGGTTTGGTGGTCTGCACCAGATCCTGTCTTTCTGGGTGGTGGTGGTGTGTaGACATCAGGCGCTGGGAAG +
Preference number: 4 (lower is better)
Translates to: GGLVRGLVWWSAPDPVFLGGGGV*TSGAGK
Trigger: CTTCCCAGCGCCTGATGTCCACACACCACCACCACC...CAGAAAGACAGGATCTGGTGCAGACCACCAAACCAAGCCTCTCACTAAGCCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR TCA 90 bp AGGGATAAGGCCTGGGAGGGGCCCATGGCAGGGAATCACTGGAAAGTTTCCTTGCACCTCCTTGGAGCCTaGCATTTCCAGTTTCTGCTG +
Preference number: 4 (lower is better)
Translates to: RDKAWEGPMAGNHWKVSLHLLGA*HFQFLL
Trigger: CAGCAGAAACTGGAAATGTCAGGCTCCAAGGAGGTG...CAAGGAAACTTTCCAGTGATTCCCTGCCATGGGCCCCTCCCAGGCCTTATCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR TCA 90 bp GGAGTTTCCACAGCTGGAGCTGTAGTGTATGTAATACTACTTCAGAGCGGGAAGGTGCACCGTTGCAGCTaGGGTCTGCATGGAGGGCGG +
Preference number: 4 (lower is better)
Translates to: GVSTAGAVVYVILLQSGKVHRCS*GLHGGR
Trigger: CCGCCCTCCATGCAGACCTCAGCTGCAACGGTGCAC...CTTCCCGCTCTGAAGTAGTATTACATACACTACAGCTCCAGCTGTGGAAACTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR TCA 90 bp AATTTCTCCACGTGCTGCCAGTTCCCAGGGCCCAAACCACTGAGGAGATGTGGACTCCTGCTGCGTCTCTaGACGGGCTCTTACCTTCTT +
Preference number: 4 (lower is better)
Translates to: NFSTCCQFPGPKPLRRCGLLLRL*TGSYLL
Trigger: AAGAAGGTAAGAGCCCGTTCAGAGACGCAGCAGGAG...TCCACATCTCCTCAGTGGTTTGGGCCCTGGGAACTGGCAGCACGTGGAGAAATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp GGTGGCTTAGTGAGAGGCTTGGTTTGGTGGTCTGCACCAGATCCTGTCTTTCTGCTCTTCCTTGAGCGATaGCTCCCGCTCTTTCAGGCC +
Preference number: 4 (lower is better)
Translates to: GGLVRGLVWWSAPDPVFLLFLER*LPLFQA
Trigger: GGCCTGAAAGAGCGGGAGGCATCGCTCAAGGAAGAG...CAGAAAGACAGGATCTGGTGCAGACCACCAAACCAAGCCTCTCACTAAGCCACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp AATTTCTCCACGTGCTGCCAGTTCCCAGGGCCCAAACCACTGAGGAGATGTGGAGAGGGAGTTGAGCCTTaGTGGCTGGCAACAATGGCT +
Preference number: 4 (lower is better)
Translates to: NFSTCCQFPGPKPLRRCGEGVEP*WLATMA
Trigger: AGCCATTGTTGCCAGCCAGCAAGGCTCAACTCCCTC...TCCACATCTCCTCAGTGGTTTGGGCCCTGGGAACTGGCAGCACGTGGAGAAATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp CCAGCTAGCTGCCCAGCTGAATCTTGGGGGCCATCAGAGTACACAGATAAGGTACCCAAGGGAACTGGCTaGAGGACCCCAGGATCCTTT +
Preference number: 4 (lower is better)
Translates to: PASCPAESWGPSEYTDKVPKGTG*RTPGSF
Trigger: AAAGGATCCTGGGGTCCTCCAGCCAGTTCCCTTGGG...TACCTTATCTGTGTACTCTGATGGCCCCCAAGATTCAGCTGGGCAGCTAGCTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp GGAGTTTCCACAGCTGGAGCTGTAGTGTATGTAATACTACTTCAGAGCGGGAAGCAGTGGCAGCACCGCTaGGGTGGAGACTGGGGACTC +
Preference number: 4 (lower is better)
Translates to: GVSTAGAVVYVILLQSGKQWQHR*GGDWGL
Trigger: GAGTCCCCAGTCTCCACCCCAGCGGTGCTGCCACTG...CTTCCCGCTCTGAAGTAGTATTACATACACTACAGCTCCAGCTGTGGAAACTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR CAA 72 bp GAGCAAGAGCATGGGCAGGGTGGCTTAGTGAGAGGCTaGGTTTGGTGGTCTGCACCAGATCCTGTCTTTCTG +
Preference number: 4 (lower is better)
Translates to: EQEHGQGGLVRG*VWWSAPDPVFL
Trigger: CAGAAAGACAGGATCTGGTGCAGACCACCAAACCAAGCCTCTCACTAAGCCACCCTGCCCATGCTCTTGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR TCA 90 bp GGTGGCTTAGTGAGAGGCTTGGTTTGGTGGTCTGCACCAGATCCTGTCTTTCTGATCGGGTACGGACCATaGTCTGCTCACAGGGAGATG +
Preference number: 4 (lower is better)
Translates to: GGLVRGLVWWSAPDPVFLIGYGP*SAHREM
Trigger: CATCTCCCTGTGAGCAGATCATGGTCCGTACCCGAT...CAGAAAGACAGGATCTGGTGCAGACCACCAAACCAAGCCTCTCACTAAGCCACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR TCA 90 bp GGAGTTTCCACAGCTGGAGCTGTAGTGTATGTAATACTACTTCAGAGCGGGAAGGGTGGTGGTCAAGCCTaGGGAGGAACCTGGGCTTGC +
Preference number: 4 (lower is better)
Translates to: GVSTAGAVVYVILLQSGKGGGQA*GGTWAC
Trigger: GCAAGCCCAGGTTCCTCCTCAGGCTTGACCACCACC...CTTCCCGCTCTGAAGTAGTATTACATACACTACAGCTCCAGCTGTGGAAACTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR TCA 90 bp AGGGATAAGGCCTGGGAGGGGCCCATGGCAGGGAATCACTGGAAAGTTTCCTTGGCTATTGGTTTTGACTaGGCTGGCTTCGGCTCCATT +
Preference number: 4 (lower is better)
Translates to: RDKAWEGPMAGNHWKVSLAIGFD*AGFGSI
Trigger: AATGGAGCCGAAGCCAGCTCAGTCAAAACCAATAGC...CAAGGAAACTTTCCAGTGATTCCCTGCCATGGGCCCCTCCCAGGCCTTATCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp AATTTCTCCACGTGCTGCCAGTTCCCAGGGCCCAAACCACTGAGGAGATGTGGATGTCTCAACCGGGTTTaGATCCACTCCTTTCCCTCC +
Preference number: 4 (lower is better)
Translates to: NFSTCCQFPGPKPLRRCGCLNRV*IHSFPS
Trigger: GGAGGGAAAGGAGTGGATGCAAACCCGGTTGAGACA...TCCACATCTCCTCAGTGGTTTGGGCCCTGGGAACTGGCAGCACGTGGAGAAATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp AATTTCTCCACGTGCTGCCAGTTCCCAGGGCCCAAACCACTGAGGAGATGTGGAGCTCTTACCTTCTTCTaGTCGGCATACCTTCCCAGG +
Preference number: 4 (lower is better)
Translates to: NFSTCCQFPGPKPLRRCGALTFF*SAYLPR
Trigger: CCTGGGAAGGTATGCCGAGCAGAAGAAGGTAAGAGC...TCCACATCTCCTCAGTGGTTTGGGCCCTGGGAACTGGCAGCACGTGGAGAAATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp GGAGTTTCCACAGCTGGAGCTGTAGTGTATGTAATACTACTTCAGAGCGGGAAGTTGGTCGGGGCTCCTTaGTCCCGAGGCGGGATTCCT +
Preference number: 4 (lower is better)
Translates to: GVSTAGAVVYVILLQSGKLVGAP*SRGGIP
Trigger: AGGAATCCCGCCTCGGGAGCAAGGAGCCCCGACCAA...CTTCCCGCTCTGAAGTAGTATTACATACACTACAGCTCCAGCTGTGGAAACTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp GGTGGCTTAGTGAGAGGCTTGGTTTGGTGGTCTGCACCAGATCCTGTCTTTCTGCTGTTGGGCATTGCTTaGACCACGGTGGTGGTCAAG +
Preference number: 4 (lower is better)
Translates to: GGLVRGLVWWSAPDPVFLLLGIA*TTVVVK
Trigger: CTTGACCACCACCGTGGTCCAAGCAATGCCCAACAG...CAGAAAGACAGGATCTGGTGCAGACCACCAAACCAAGCCTCTCACTAAGCCACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp TGGCTTAGTGAGAGGCTTGGTTTGGTGGTCTGCACCAGATCCTGTCTTTCTGACCCCTCCATTCCTGCCTaGCTGCTTGAGGTGAGAGTC +
Preference number: 4 (lower is better)
Translates to: WLSERLGLVVCTRSCLSDPSIPA*LLEVRV
Trigger: GACTCTCACCTCAAGCAGCCAGGCAGGAATGGAGGG...GTCAGAAAGACAGGATCTGGTGCAGACCACCAAACCAAGCCTCTCACTAAGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp AGGGATAAGGCCTGGGAGGGGCCCATGGCAGGGAATCACTGGAAAGTTTCCTTGCTTTGGACTCTGAGCTaGCTTTACAGCTCACACTGG +
Preference number: 4 (lower is better)
Translates to: RDKAWEGPMAGNHWKVSLLWTLS*LYSSHW
Trigger: CCAGTGTGAGCTGTAAAGCCAGCTCAGAGTCCAAAG...CAAGGAAACTTTCCAGTGATTCCCTGCCATGGGCCCCTCCCAGGCCTTATCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR TCA 90 bp TCTGAGCATTTATCTGTGCTCACATCAGAGGGGGATGTCTCCACACTTGAAGACTTGCCTTCCTTCCCTTaGGGACCTGGCACTGGGGTG +
Preference number: 4 (lower is better)
Translates to: SEHLSVLTSEGDVSTLEDLPSFP*GPGTGV
Trigger: CACCCCAGTGCCAGGTCCTCAAGGGAAGGAAGGCAA...GTCTTCAAGTGTGGAGACATCCCCCTCTGATGTGAGCACAGATAAATGCTCAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp AGGGATAAGGCCTGGGAGGGGCCCATGGCAGGGAATCACTGGAAAGTTTCCTTGCAAAGGATTGAGCGCTaGCCCAGGTTCAATAGCTAT +
Preference number: 4 (lower is better)
Translates to: RDKAWEGPMAGNHWKVSLQRIER*PRFNSY
Trigger: ATAGCTATTGAACCTGGGGCAGCGCTCAATCCTTTG...CAAGGAAACTTTCCAGTGATTCCCTGCCATGGGCCCCTCCCAGGCCTTATCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp CTCTTGGGCTTTGTGCTTAATGTCTCCCACCACCCCACTTTCCCAAAGAAGTTATACTGCTGGGACGCATaGGCTTGCCTCTTCCTCGGC +
Preference number: 4 (lower is better)
Translates to: LLGFVLNVSHHPTFPKKLYCWDA*ACLFLG
Trigger: GCCGAGGAAGAGGCAAGCGCATGCGTCCCAGCAGTA...TAACTTCTTTGGGAAAGTGGGGTGGTGGGAGACATTAAGCACAAAGCCCAAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp GGAGTTTCCACAGCTGGAGCTGTAGTGTATGTAATACTACTTCAGAGCGGGAAGCTCCTGCTCGGGTCTTaGTGCTGCTGCTGGTCCCTT +
Preference number: 4 (lower is better)
Translates to: GVSTAGAVVYVILLQSGKLLLGS*CCCWSL
Trigger: AAGGGACCAGCAGCAGCAGCAAGACCCGAGCAGGAG...CTTCCCGCTCTGAAGTAGTATTACATACACTACAGCTCCAGCTGTGGAAACTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp GTATGTAATACTACTTCAGAGCGGGAAGACCGGACTCAGACTAGGGACCAGGAGGGAGTCACAGAACCTTaGGGGTGCCCAATCATGCCT +
Preference number: 4 (lower is better)
Translates to: VCNTTSEREDRTQTRDQEGVTEP*GCPIMP
Trigger: AGGCATGATTGGGCACCCCCAAGGTTCTGTGACTCC...CTCCTGGTCCCTAGTCTGAGTCCGGTCTTCCCGCTCTGAAGTAGTATTACATAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp CCAGCTAGCTGCCCAGCTGAATCTTGGGGGCCATCAGAGTACACAGATAAGGTAGCATTTCCAAGTCACTaGTGGGGGAGTCACAGAACC +
Preference number: 4 (lower is better)
Translates to: PASCPAESWGPSEYTDKVAFPSH*WGSHRT
Trigger: GGTTCTGTGACTCCCCCACCAGTGACTTGGAAATGC...TACCTTATCTGTGTACTCTGATGGCCCCCAAGATTCAGCTGGGCAGCTAGCTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp GGTGGCTTAGTGAGAGGCTTGGTTTGGTGGTCTGCACCAGATCCTGTCTTTCTGCAAGGATCCTTTCTGTaGGACAGGTGCACCGTTGCA +
Preference number: 4 (lower is better)
Translates to: GGLVRGLVWWSAPDPVFLQGSFL*DRCTVA
Trigger: TGCAACGGTGCACCTGTCCCACAGAAAGGATCCTTG...CAGAAAGACAGGATCTGGTGCAGACCACCAAACCAAGCCTCTCACTAAGCCACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp GGAGTTTCCACAGCTGGAGCTGTAGTGTATGTAATACTACTTCAGAGCGGGAAGCGGGGTCCTTCGACTTaGCACTGTCCACCTTGCCCT +
Preference number: 4 (lower is better)
Translates to: GVSTAGAVVYVILLQSGKRGPST*HCPPCP
Trigger: AGGGCAAGGTGGACAGTGCCAAGTCGAAGGACCCCG...CTTCCCGCTCTGAAGTAGTATTACATACACTACAGCTCCAGCTGTGGAAACTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp CTCTTGGGCTTTGTGCTTAATGTCTCCCACCACCCCACTTTCCCAAAGAAGTTACGGAGGGCTGCTGACTaGAATTGCTCAGCTCCGGCT +
Preference number: 4 (lower is better)
Translates to: LLGFVLNVSHHPTFPKKLRRAAD*NCSAPA
Trigger: AGCCGGAGCTGAGCAATTCCAGTCAGCAGCCCTCCG...TAACTTCTTTGGGAAAGTGGGGTGGTGGGAGACATTAAGCACAAAGCCCAAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp TCTGAGCATTTATCTGTGCTCACATCAGAGGGGGATGTCTCCACACTTGAAGACGAGGACACAGGCACATaGACACTTGGTCGGGGCTCC +
Preference number: 4 (lower is better)
Translates to: SEHLSVLTSEGDVSTLEDEDTGT*TLGRGS
Trigger: GGAGCCCCGACCAAGTGTCCATGTGCCTGTGTCCTC...GTCTTCAAGTGTGGAGACATCCCCCTCTGATGTGAGCACAGATAAATGCTCAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp GGTGGCTTAGTGAGAGGCTTGGTTTGGTGGTCTGCACCAGATCCTGTCTTTCTGGGAGTTGAGCCTTGCTaGCTGGCAACAATGGCTGTA +
Preference number: 4 (lower is better)
Translates to: GGLVRGLVWWSAPDPVFLGVEPC*LATMAV
Trigger: TACAGCCATTGTTGCCAGCCAGCAAGGCTCAACTCC...CAGAAAGACAGGATCTGGTGCAGACCACCAAACCAAGCCTCTCACTAAGCCACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR TCA 90 bp TCTGAGCATTTATCTGTGCTCACATCAGAGGGGGATGTCTCCACACTTGAAGACCTTAGCAGCCTTCTCTaGGCCCTTGGGAGCAACAGC +
Preference number: 4 (lower is better)
Translates to: SEHLSVLTSEGDVSTLEDLSSLL*ALGSNS
Trigger: GCTGTTGCTCCCAAGGGCTCAGAGAAGGCTGCTAAG...GTCTTCAAGTGTGGAGACATCCCCCTCTGATGTGAGCACAGATAAATGCTCAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR TCA 90 bp GTTAGAGCCACCTACCTTCCTGCTCTCAAACTGTCACTTTTGACATTCTTGTTTAGGAGGGCGGTGCTCTaGGGAGTTCTGGCTACCCCG +
Preference number: 4 (lower is better)
Translates to: VRATYLPALKLSLLTFLFRRAVL*GVLATP
Trigger: CGGGGTAGCCAGAACTCCTCAGAGCACCGCCCTCCT...AAACAAGAATGTCAAAAGTGACAGTTTGAGAGCAGGAAGGTAGGTGGCTCTAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR TCA 90 bp GGAGTTTCCACAGCTGGAGCTGTAGTGTATGTAATACTACTTCAGAGCGGGAAGACAGTGGGCTTGGGCTaGATGGGCTTGAGTTGGGGA +
Preference number: 4 (lower is better)
Translates to: GVSTAGAVVYVILLQSGKTVGLG*MGLSWG
Trigger: TCCCCAACTCAAGCCCATTCAGCCCAAGCCCACTGT...CTTCCCGCTCTGAAGTAGTATTACATACACTACAGCTCCAGCTGTGGAAACTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR TCA 90 bp GGAGTTTCCACAGCTGGAGCTGTAGTGTATGTAATACTACTTCAGAGCGGGAAGATGACGGAGGGCTGCTaGCTGGAATTGCTCAGCTCC +
Preference number: 4 (lower is better)
Translates to: GVSTAGAVVYVILLQSGKMTEGC*LELLSS
Trigger: GGAGCTGAGCAATTCCAGTCAGCAGCCCTCCGTCAT...CTTCCCGCTCTGAAGTAGTATTACATACACTACAGCTCCAGCTGTGGAAACTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR TCA 90 bp GGAGTTTCCACAGCTGGAGCTGTAGTGTATGTAATACTACTTCAGAGCGGGAAGGCTTCCACTCTTCCTTaGGCGATGCCTCCCGCTCTT +
Preference number: 4 (lower is better)
Translates to: GVSTAGAVVYVILLQSGKASTLP*AMPPAL
Trigger: AAGAGCGGGAGGCATCGCTCAAGGAAGAGTGGAAGC...CTTCCCGCTCTGAAGTAGTATTACATACACTACAGCTCCAGCTGTGGAAACTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp GTATGTAATACTACTTCAGAGCGGGAAGACCGGACTCAGACTAGGGACCAGGAGGGGGGTGCCCAATCATaGCTTGTGCAGTCAAGAAGT +
Preference number: 4 (lower is better)
Translates to: VCNTTSEREDRTQTRDQEGGAQS*LVQSRS
Trigger: ACTTCTTGACTGCACAAGGCATGATTGGGCACCCCC...CTCCTGGTCCCTAGTCTGAGTCCGGTCTTCCCGCTCTGAAGTAGTATTACATAC
52% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp GTATGTAATACTACTTCAGAGCGGGAAGACCGGACTCAGACTAGGGACCAGGAGTTTGCTATTGGCTCCTaGTCGGGTCTTGCTGCTGCT +
Preference number: 4 (lower is better)
Translates to: VCNTTSEREDRTQTRDQEFAIGS*SGLAAA
Trigger: AGCAGCAGCAAGACCCGAGCAGGAGCCAATAGCAAA...CTCCTGGTCCCTAGTCTGAGTCCGGTCTTCCCGCTCTGAAGTAGTATTACATAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp TCTGAGCATTTATCTGTGCTCACATCAGAGGGGGATGTCTCCACACTTGAAGACCGCCACCTGAGACCTTaGTGCCATACGGGGAGAAAG +
Preference number: 4 (lower is better)
Translates to: SEHLSVLTSEGDVSTLEDRHLRP*CHTGRK
Trigger: CTTTCTCCCCGTATGGCAGCAAGGTCTCAGGTGGCG...GTCTTCAAGTGTGGAGACATCCCCCTCTGATGTGAGCACAGATAAATGCTCAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp AGGGATAAGGCCTGGGAGGGGCCCATGGCAGGGAATCACTGGAAAGTTTCCTTGTTATCGTGGGAGACTTaGTCTTGTAGTGACTGGCAT +
Preference number: 4 (lower is better)
Translates to: RDKAWEGPMAGNHWKVSLLSWET*SCSDWH
Trigger: ATGCCAGTCACTACAAGAGCAAGTCTCCCACGATAA...CAAGGAAACTTTCCAGTGATTCCCTGCCATGGGCCCCTCCCAGGCCTTATCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp AGAACACAGGGTCATTTTTCTACTGCTAATCTCGTTTCAGAGCAGCACCTGTTTCTGCTCCCGCAACACTaGCACAGCTGCCACCACCCC +
Preference number: 4 (lower is better)
Translates to: RTQGHFSTANLVSEQHLFLLPQH*HSCHHP
Trigger: GGGGTGGTGGCAGCTGTGGCAGTGTTGCGGGAGCAG...AAACAGGTGCTGCTCTGAAACGAGATTAGCAGTAGAAAAATGACCCTGTGTTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp CCAGCTAGCTGCCCAGCTGAATCTTGGGGGCCATCAGAGTACACAGATAAGGTATGCTTTTCCGCTTATTaGCTGAGGAAGGGCTGGCTT +
Preference number: 4 (lower is better)
Translates to: PASCPAESWGPSEYTDKVCFSAY*LRKGWL
Trigger: AAGCCAGCCCTTCCTCAGCCAATAAGCGGAAAAGCA...TACCTTATCTGTGTACTCTGATGGCCCCCAAGATTCAGCTGGGCAGCTAGCTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp GGTGGCTTAGTGAGAGGCTTGGTTTGGTGGTCTGCACCAGATCCTGTCTTTCTGTTCTGTCCACAAGAGTaGGTTCTACCTTGGTCCCAG +
Preference number: 4 (lower is better)
Translates to: GGLVRGLVWWSAPDPVFLFCPQE*VLPWSQ
Trigger: CTGGGACCAAGGTAGAACCCACTCTTGTGGACAGAA...CAGAAAGACAGGATCTGGTGCAGACCACCAAACCAAGCCTCTCACTAAGCCACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp CTCTTGGGCTTTGTGCTTAATGTCTCCCACCACCCCACTTTCCCAAAGAAGTTACTTGGACCACGGTGGTaGTCAAGCCTGAGGAGGAAC +
Preference number: 4 (lower is better)
Translates to: LLGFVLNVSHHPTFPKKLLGPRW*SSLRRN
Trigger: GTTCCTCCTCAGGCTTGACCACCACCGTGGTCCAAG...TAACTTCTTTGGGAAAGTGGGGTGGTGGGAGACATTAAGCACAAAGCCCAAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp TCTGAGCATTTATCTGTGCTCACATCAGAGGGGGATGTCTCCACACTTGAAGACTTGCTTGGACCACGGTaGTGGTCAAGCCTGAGGAGG +
Preference number: 4 (lower is better)
Translates to: SEHLSVLTSEGDVSTLEDLLGPR*WSSLRR
Trigger: CCTCCTCAGGCTTGACCACCACCGTGGTCCAAGCAA...GTCTTCAAGTGTGGAGACATCCCCCTCTGATGTGAGCACAGATAAATGCTCAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp CTCTTGGGCTTTGTGCTTAATGTCTCCCACCACCCCACTTTCCCAAAGAAGTTACTTTACAGCTCACACTaGGGCTGGCACGGGCCTTGT +
Preference number: 4 (lower is better)
Translates to: LLGFVLNVSHHPTFPKKLLYSSH*GWHGPC
Trigger: ACAAGGCCCGTGCCAGCCCCAGTGTGAGCTGTAAAG...TAACTTCTTTGGGAAAGTGGGGTGGTGGGAGACATTAAGCACAAAGCCCAAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR TCA 90 bp TCTCTCAGTTGCTCCTATGCCTTCATCTCCATAGATGACCACAACAAAACTGTGAACTTTGGGGGTAGCTaGGCGGGCAGGGGACAAGGA +
Preference number: 4 (lower is better)
Translates to: SLSCSYAFISIDDHNKTVNFGGS*AGRGQG
Trigger: TCCTTGTCCCCTGCCCGCTCAGCTACCCCCAAAGTT...CACAGTTTTGTTGTGGTCATCTATGGAGATGAAGGCATAGGAGCAACTGAGAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR TCA 90 bp GGAGTTTCCACAGCTGGAGCTGTAGTGTATGTAATACTACTTCAGAGCGGGAAGCAGGGCTATTGGTTTTaGCTGAGCTGGCTTCGGCTC +
Preference number: 4 (lower is better)
Translates to: GVSTAGAVVYVILLQSGKQGYWF*LSWLRL
Trigger: GAGCCGAAGCCAGCTCAGTCAAAACCAATAGCCCTG...CTTCCCGCTCTGAAGTAGTATTACATACACTACAGCTCCAGCTGTGGAAACTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR TCA 90 bp GTAGGCTTAGTGGAGACTACATGTACAAGTATAAGATGGGGAAATGAGGAAGTAGGCCTTGCCGGGCCCTaGCTTCACCAGGTCTGTCAG +
Preference number: 4 (lower is better)
Translates to: VGLVETTCTSIRWGNEEVGLAGP*LHQVCQ
Trigger: CTGACAGACCTGGTGAAGTCAGGGCCCGGCAAGGCC...TACTTCCTCATTTCCCCATCTTATACTTGTACATGTAGTCTCCACTAAGCCTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR TCA 90 bp GGAGTTTCCACAGCTGGAGCTGTAGTGTATGTAATACTACTTCAGAGCGGGAAGCAGGGCTTTGGACTCTaGGCTGGCTTTACAGCTCAC +
Preference number: 4 (lower is better)
Translates to: GVSTAGAVVYVILLQSGKQGFGL*AGFTAH
Trigger: GTGAGCTGTAAAGCCAGCTCAGAGTCCAAAGCCCTG...CTTCCCGCTCTGAAGTAGTATTACATACACTACAGCTCCAGCTGTGGAAACTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp AGAACACAGGGTCATTTTTCTACTGCTAATCTCGTTTCAGAGCAGCACCTGTTTTGGGACGCATGCGCTTaGCTCTTCCTCGGCCGTTCC +
Preference number: 4 (lower is better)
Translates to: RTQGHFSTANLVSEQHLFWDACA*LFLGRS
Trigger: GGAACGGCCGAGGAAGAGGCAAGCGCATGCGTCCCA...AAACAGGTGCTGCTCTGAAACGAGATTAGCAGTAGAAAAATGACCCTGTGTTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp TCTCTCAGTTGCTCCTATGCCTTCATCTCCATAGATGACCACAACAAAACTGTGTACCCCGACGGCCTTTaGTATTGGCTCCTGCTCGGG +
Preference number: 4 (lower is better)
Translates to: SLSCSYAFISIDDHNKTVYPDGL*YWLLLG
Trigger: CCCGAGCAGGAGCCAATAGCAAAGGCCGTCGGGGTA...CACAGTTTTGTTGTGGTCATCTATGGAGATGAAGGCATAGGAGCAACTGAGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp GTTAGAGCCACCTACCTTCCTGCTCTCAAACTGTCACTTTTGACATTCTTGTTTTTGTCCAGTCCCCGCTaGTGCTGCTGCTGCTGCTCC +
Preference number: 4 (lower is better)
Translates to: VRATYLPALKLSLLTFLFLSSPR*CCCCCS
Trigger: GGAGCAGCAGCAGCAGCAGCAGCGGGGACTGGACAA...AAACAAGAATGTCAAAAGTGACAGTTTGAGAGCAGGAAGGTAGGTGGCTCTAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp CCAGCTAGCTGCCCAGCTGAATCTTGGGGGCCATCAGAGTACACAGATAAGGTATTGAGGACCTGGCACTaGGGTGACAAACTTGATGTT +
Preference number: 4 (lower is better)
Translates to: PASCPAESWGPSEYTDKVLRTWH*GDKLDV
Trigger: AACATCAAGTTTGTCACCCCAGTGCCAGGTCCTCAA...TACCTTATCTGTGTACTCTGATGGCCCCCAAGATTCAGCTGGGCAGCTAGCTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp CTCTTGGGCTTTGTGCTTAATGTCTCCCACCACCCCACTTTCCCAAAGAAGTTATCTTGCTGCTGCTGCTaGTCCCTTTGCTGTCAGAGG +
Preference number: 4 (lower is better)
Translates to: LLGFVLNVSHHPTFPKKLSCCCC*SLCCQR
Trigger: CCTCTGACAGCAAAGGGACCAGCAGCAGCAGCAAGA...TAACTTCTTTGGGAAAGTGGGGTGGTGGGAGACATTAAGCACAAAGCCCAAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp GTTAGAGCCACCTACCTTCCTGCTCTCAAACTGTCACTTTTGACATTCTTGTTTGCCTCCTTGCCTAGGTaGCTGGCCTCACCCAGCTTC +
Preference number: 4 (lower is better)
Translates to: VRATYLPALKLSLLTFLFASLPR*LASPSF
Trigger: GAAGCTGGGTGAGGCCAGCCACCTAGGCAAGGAGGC...AAACAAGAATGTCAAAAGTGACAGTTTGAGAGCAGGAAGGTAGGTGGCTCTAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp CTCTTGGGCTTTGTGCTTAATGTCTCCCACCACCCCACTTTCCCAAAGAAGTTAGGTAGCTGGGGTGGTTaGGGTCATATGACTGGCTGT +
Preference number: 4 (lower is better)
Translates to: LLGFVLNVSHHPTFPKKLGSWGG*GHMTGC
Trigger: ACAGCCAGTCATATGACCCCAACCACCCCAGCTACC...TAACTTCTTTGGGAAAGTGGGGTGGTGGGAGACATTAAGCACAAAGCCCAAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR CAA 72 bp GTTCATGAGTTCTCGGGAGCTAGCTTCTCTTGGGCTTaGTGCTTAATGTCTCCCACCACCCCACTTTCCCAA +
Preference number: 4 (lower is better)
Translates to: VHEFSGASFSWA*CLMSPTTPLSQ
Trigger: TTGGGAAAGTGGGGTGGTGGGAGACATTAAGCACAAAGCCCAAGAGAAGCTAGCTCCCGAGAACTCATGAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR TCA 90 bp TGGCTTAGTGAGAGGCTTGGTTTGGTGGTCTGCACCAGATCCTGTCTTTCTGACCTGCTCACAGGGAGATaGGATGTCATTATTGACCAC +
Preference number: 4 (lower is better)
Translates to: WLSERLGLVVCTRSCLSDLLTGR*DVIIDH
Trigger: GTGGTCAATAATGACATCTCATCTCCCTGTGAGCAG...GTCAGAAAGACAGGATCTGGTGCAGACCACCAAACCAAGCCTCTCACTAAGCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR TCA 90 bp TCTCTCAGTTGCTCCTATGCCTTCATCTCCATAGATGACCACAACAAAACTGTGCGATGCCTTCAAGGTTaGCGCTGGTTCCAGGCTCAC +
Preference number: 4 (lower is better)
Translates to: SLSCSYAFISIDDHNKTVRCLQG*RWFQAH
Trigger: GTGAGCCTGGAACCAGCGTCAACCTTGAAGGCATCG...CACAGTTTTGTTGTGGTCATCTATGGAGATGAAGGCATAGGAGCAACTGAGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp TCTGAGCATTTATCTGTGCTCACATCAGAGGGGGATGTCTCCACACTTGAAGACACAGAACCTTGGGGGTaGCCAATCATGCCTTGTGCA +
Preference number: 4 (lower is better)
Translates to: SEHLSVLTSEGDVSTLEDTEPWG*PIMPCA
Trigger: TGCACAAGGCATGATTGGGCACCCCCAAGGTTCTGT...GTCTTCAAGTGTGGAGACATCCCCCTCTGATGTGAGCACAGATAAATGCTCAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp TCTCTCAGTTGCTCCTATGCCTTCATCTCCATAGATGACCACAACAAAACTGTGGGAGGAACCTGGGCTTaGTGCTGTGAAGGTGGCTGT +
Preference number: 4 (lower is better)
Translates to: SLSCSYAFISIDDHNKTVGGTWA*CCEGGC
Trigger: ACAGCCACCTTCACAGCAGCAAGCCCAGGTTCCTCC...CACAGTTTTGTTGTGGTCATCTATGGAGATGAAGGCATAGGAGCAACTGAGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp TCTGAGCATTTATCTGTGCTCACATCAGAGGGGGATGTCTCCACACTTGAAGACCCTTCTTTAACCAGCTaGTCGGGGTCCTTCGACTTG +
Preference number: 4 (lower is better)
Translates to: SEHLSVLTSEGDVSTLEDPSLTS*SGSFDL
Trigger: CAAGTCGAAGGACCCCGAGCAGCTGGTTAAAGAAGG...GTCTTCAAGTGTGGAGACATCCCCCTCTGATGTGAGCACAGATAAATGCTCAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp TGGCTTAGTGAGAGGCTTGGTTTGGTGGTCTGCACCAGATCCTGTCTTTCTGACTGCAGTCACTACTTGTaGTTTCCTTCCCGTCTTCCT +
Preference number: 4 (lower is better)
Translates to: WLSERLGLVVCTRSCLSDCSHYL*FPSRLP
Trigger: AGGAAGACGGGAAGGAAAGCACAAGTAGTGACTGCA...GTCAGAAAGACAGGATCTGGTGCAGACCACCAAACCAAGCCTCTCACTAAGCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp TGTGTTATAAAGACACTCCTCATATTGGCACGTACGGAGTTACAGAGTGAACTGGTGTGGCCACAGCATTaGGGGCTGGTATCCCCACCT +
Preference number: 4 (lower is better)
Translates to: CVIKTLLILARTELQSELVWPQH*GLVSPP
Trigger: AGGTGGGGATACCAGCCCCCAATGCTGTGGCCACAC...CAGTTCACTCTGTAACTCCGTACGTGCCAATATGAGGAGTGTCTTTATAACACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp TCTCTCAGTTGCTCCTATGCCTTCATCTCCATAGATGACCACAACAAAACTGTGCAGGTGTGTTACTGCTaGGACGCATGCGCTTGCCTC +
Preference number: 4 (lower is better)
Translates to: SLSCSYAFISIDDHNKTVQVCYC*DACACL
Trigger: GAGGCAAGCGCATGCGTCCCAGCAGTAACACACCTG...CACAGTTTTGTTGTGGTCATCTATGGAGATGAAGGCATAGGAGCAACTGAGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp TCTCTCAGTTGCTCCTATGCCTTCATCTCCATAGATGACCACAACAAAACTGTGGGATGGCAGGGGCAATaGGGCGGGCTGATTTTAAGC +
Preference number: 4 (lower is better)
Translates to: SLSCSYAFISIDDHNKTVGWQGQ*GGLILS
Trigger: GCTTAAAATCAGCCCGCCCCATTGCCCCTGCCATCC...CACAGTTTTGTTGTGGTCATCTATGGAGATGAAGGCATAGGAGCAACTGAGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp GGAGTTTCCACAGCTGGAGCTGTAGTGTATGTAATACTACTTCAGAGCGGGAAGAGTGTAGATCTGTTGTaGGGGGATGGCAGGGGCAAT +
Preference number: 4 (lower is better)
Translates to: GVSTAGAVVYVILLQSGKSVDLL*GDGRGN
Trigger: ATTGCCCCTGCCATCCCCCCACAACAGATCTACACT...CTTCCCGCTCTGAAGTAGTATTACATACACTACAGCTCCAGCTGTGGAAACTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp TCTCTCAGTTGCTCCTATGCCTTCATCTCCATAGATGACCACAACAAAACTGTGGCTTCGGCTCCATTCTaGGTCACTACGTGGAGGGGA +
Preference number: 4 (lower is better)
Translates to: SLSCSYAFISIDDHNKTVASAPF*VTTWRG
Trigger: TCCCCTCCACGTAGTGACCCAGAATGGAGCCGAAGC...CACAGTTTTGTTGTGGTCATCTATGGAGATGAAGGCATAGGAGCAACTGAGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp GTTAGAGCCACCTACCTTCCTGCTCTCAAACTGTCACTTTTGACATTCTTGTTTCCTTGCCTAGGTGGCTaGCCTCACCCAGCTTCCCTT +
Preference number: 4 (lower is better)
Translates to: VRATYLPALKLSLLTFLFPCLGG*PHPASL
Trigger: AAGGGAAGCTGGGTGAGGCCAGCCACCTAGGCAAGG...AAACAAGAATGTCAAAAGTGACAGTTTGAGAGCAGGAAGGTAGGTGGCTCTAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp AGAACACAGGGTCATTTTTCTACTGCTAATCTCGTTTCAGAGCAGCACCTGTTTAGGCACATGGACACTTaGTCGGGGCTCCTTGCTCCC +
Preference number: 4 (lower is better)
Translates to: RTQGHFSTANLVSEQHLFRHMDT*SGLLAP
Trigger: GGGAGCAAGGAGCCCCGACCAAGTGTCCATGTGCCT...AAACAGGTGCTGCTCTGAAACGAGATTAGCAGTAGAAAAATGACCCTGTGTTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp AGAACACAGGGTCATTTTTCTACTGCTAATCTCGTTTCAGAGCAGCACCTGTTTGCATCCCCCGGTAGCTaGGGTGGTTGGGGTCATATG +
Preference number: 4 (lower is better)
Translates to: RTQGHFSTANLVSEQHLFASPGS*GGWGHM
Trigger: CATATGACCCCAACCACCCCAGCTACCGGGGGATGC...AAACAGGTGCTGCTCTGAAACGAGATTAGCAGTAGAAAAATGACCCTGTGTTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp TCTCTCAGTTGCTCCTATGCCTTCATCTCCATAGATGACCACAACAAAACTGTGCCCAAGTGGTGGTGGTaGTGGTGTGTGGACATCAGG +
Preference number: 4 (lower is better)
Translates to: SLSCSYAFISIDDHNKTVPKWWW*WCVDIR
Trigger: CCTGATGTCCACACACCACCACCACCACCACTTGGG...CACAGTTTTGTTGTGGTCATCTATGGAGATGAAGGCATAGGAGCAACTGAGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR CAA 72 bp TTCCCAGGGCCCAAACCACTGAGGAGATGTGGAATCTaGTTTATGGTGGTAATGACAGTGAGGGGTATGGCT +
Preference number: 4 (lower is better)
Translates to: FPGPKPLRRCGI*FMVVMTVRGMA
Trigger: AGCCATACCCCTCACTGTCATTACCACCATAAACAAGATTCCACATCTCCTCAGTGGTTTGGGCCCTGGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp AGAACACAGGGTCATTTTTCTACTGCTAATCTCGTTTCAGAGCAGCACCTGTTTGTCAGAGGCTGCGGCTaGCTCACTGACAGGTGTGTT +
Preference number: 4 (lower is better)
Translates to: RTQGHFSTANLVSEQHLFVRGCG*LTDRCV
Trigger: AACACACCTGTCAGTGAGGCAGCCGCAGCCTCTGAC...AAACAGGTGCTGCTCTGAAACGAGATTAGCAGTAGAAAAATGACCCTGTGTTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp TGTGTTATAAAGACACTCCTCATATTGGCACGTACGGAGTTACAGAGTGAACTGGGGTCTTGCTGCTGCTaGTGGTCCCTTTGCTGTCAG +
Preference number: 4 (lower is better)
Translates to: CVIKTLLILARTELQSELGSCCC*WSLCCQ
Trigger: CTGACAGCAAAGGGACCAGCAGCAGCAGCAAGACCC...CAGTTCACTCTGTAACTCCGTACGTGCCAATATGAGGAGTGTCTTTATAACACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp AGAACACAGGGTCATTTTTCTACTGCTAATCTCGTTTCAGAGCAGCACCTGTTTCTCGGGTCTTGCTGCTaGTGCTGGTCCCTTTGCTGT +
Preference number: 4 (lower is better)
Translates to: RTQGHFSTANLVSEQHLFLGSCC*CWSLCC
Trigger: ACAGCAAAGGGACCAGCAGCAGCAGCAAGACCCGAG...AAACAGGTGCTGCTCTGAAACGAGATTAGCAGTAGAAAAATGACCCTGTGTTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp CCAGCTAGCTGCCCAGCTGAATCTTGGGGGCCATCAGAGTACACAGATAAGGTATGTCTGAAAGAGGTTTaGTTTTCCGCTTATTGGCTG +
Preference number: 4 (lower is better)
Translates to: PASCPAESWGPSEYTDKVCLKEV*FSAYWL
Trigger: CAGCCAATAAGCGGAAAAGCAAACCTCTTTCAGACA...TACCTTATCTGTGTACTCTGATGGCCCCCAAGATTCAGCTGGGCAGCTAGCTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp GTTAGAGCCACCTACCTTCCTGCTCTCAAACTGTCACTTTTGACATTCTTGTTTGGAACCTGGGCTTGCTaGTGTGAAGGTGGCTGTCTG +
Preference number: 4 (lower is better)
Translates to: VRATYLPALKLSLLTFLFGTWAC*CEGGCL
Trigger: CAGACAGCCACCTTCACAGCAGCAAGCCCAGGTTCC...AAACAAGAATGTCAAAAGTGACAGTTTGAGAGCAGGAAGGTAGGTGGCTCTAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp AGAACACAGGGTCATTTTTCTACTGCTAATCTCGTTTCAGAGCAGCACCTGTTTAGCACTCAGGCTCTGTaGCTAGAGCCACGTCGCATG +
Preference number: 4 (lower is better)
Translates to: RTQGHFSTANLVSEQHLFSTQAL*LEPRRM
Trigger: CATGCGACGTGGCTCTAGCCACAGAGCCTGAGTGCT...AAACAGGTGCTGCTCTGAAACGAGATTAGCAGTAGAAAAATGACCCTGTGTTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp GTTAGAGCCACCTACCTTCCTGCTCTCAAACTGTCACTTTTGACATTCTTGTTTTGCTCTGAGGAGTTCTaGCTACCCCGACGGCCTTTG +
Preference number: 4 (lower is better)
Translates to: VRATYLPALKLSLLTFLFCSEEF*LPRRPL
Trigger: CAAAGGCCGTCGGGGTAGCCAGAACTCCTCAGAGCA...AAACAAGAATGTCAAAAGTGACAGTTTGAGAGCAGGAAGGTAGGTGGCTCTAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp TCTGAGCATTTATCTGTGCTCACATCAGAGGGGGATGTCTCCACACTTGAAGACCATCAGAGCCATCATTaGATAAGGCTCCAGGGTCTG +
Preference number: 4 (lower is better)
Translates to: SEHLSVLTSEGDVSTLEDHQSHH*IRLQGL
Trigger: CAGACCCTGGAGCCTTATCCAATGATGGCTCTGATG...GTCTTCAAGTGTGGAGACATCCCCCTCTGATGTGAGCACAGATAAATGCTCAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp AGAACACAGGGTCATTTTTCTACTGCTAATCTCGTTTCAGAGCAGCACCTGTTTGCTAACCGGCTTTGGTaGGACTCTGAGGAGCCGTTC +
Preference number: 4 (lower is better)
Translates to: RTQGHFSTANLVSEQHLFANRLW*DSEEPF
Trigger: GAACGGCTCCTCAGAGTCCCACCAAAGCCGGTTAGC...AAACAGGTGCTGCTCTGAAACGAGATTAGCAGTAGAAAAATGACCCTGTGTTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR TCA 90 bp TGTGTTATAAAGACACTCCTCATATTGGCACGTACGGAGTTACAGAGTGAACTGCCACGTCGCATGTGTTaGCACCAACTGATCGGGTAC +
Preference number: 4 (lower is better)
Translates to: CVIKTLLILARTELQSELPRRMC*HQLIGY
Trigger: GTACCCGATCAGTTGGTGTCAACACATGCGACGTGG...CAGTTCACTCTGTAACTCCGTACGTGCCAATATGAGGAGTGTCTTTATAACACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp CTCTTGGGCTTTGTGCTTAATGTCTCCCACCACCCCACTTTCCCAAAGAAGTTATCCTGTGTCCATCCCTaGACTTCCATCATACTGACT +
Preference number: 4 (lower is better)
Translates to: LLGFVLNVSHHPTFPKKLSCVHP*TSIILT
Trigger: AGTCAGTATGATGGAAGTGCAGGGATGGACACAGGA...TAACTTCTTTGGGAAAGTGGGGTGGTGGGAGACATTAAGCACAAAGCCCAAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp AGTAAGGGTAATGGGTTAGATAAGATGTTATCTCCAACATCTACCTCCACGAATACTGGCACTAACAGGTaGAGTGGCAGCACCGCTGGG +
Preference number: 4 (lower is better)
Translates to: SKGNGLDKMLSPTSTSTNTGTNR*SGSTAG
Trigger: CCCAGCGGTGCTGCCACTGCACCTGTTAGTGCCAGT...ATTCGTGGAGGTAGATGTTGGAGATAACATCTTATCTAACCCATTACCCTTACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp TCTCTCAGTTGCTCCTATGCCTTCATCTCCATAGATGACCACAACAAAACTGTGTTGTACGGACACGCTTaGTCCCTTTGGAGTCCTCTG +
Preference number: 4 (lower is better)
Translates to: SLSCSYAFISIDDHNKTVLYGHA*SLWSPL
Trigger: CAGAGGACTCCAAAGGGAGCAAGCGTGTCCGTACAA...CACAGTTTTGTTGTGGTCATCTATGGAGATGAAGGCATAGGAGCAACTGAGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp TCTCTCAGTTGCTCCTATGCCTTCATCTCCATAGATGACCACAACAAAACTGTGGATTCCATCTCCTGCTaGGTCTCTGAACGGGCTCTT +
Preference number: 4 (lower is better)
Translates to: SLSCSYAFISIDDHNKTVDSISC*VSERAL
Trigger: AAGAGCCCGTTCAGAGACGCAGCAGGAGATGGAATC...CACAGTTTTGTTGTGGTCATCTATGGAGATGAAGGCATAGGAGCAACTGAGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp TCTGAGCATTTATCTGTGCTCACATCAGAGGGGGATGTCTCCACACTTGAAGACGGAATTGAGGGCTTTTaGTTCCACTCTTCCTTGAGC +
Preference number: 4 (lower is better)
Translates to: SEHLSVLTSEGDVSTLEDGIEGF*FHSSLS
Trigger: GCTCAAGGAAGAGTGGAAGCAAAAGCCCTCAATTCC...GTCTTCAAGTGTGGAGACATCCCCCTCTGATGTGAGCACAGATAAATGCTCAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp TCTCTCAGTTGCTCCTATGCCTTCATCTCCATAGATGACCACAACAAAACTGTGCTTCCCTTGAGGACCTaGCACTGGGGTGACAAACTT +
Preference number: 4 (lower is better)
Translates to: SLSCSYAFISIDDHNKTVLPLRT*HWGDKL
Trigger: AAGTTTGTCACCCCAGTGCCAGGTCCTCAAGGGAAG...CACAGTTTTGTTGTGGTCATCTATGGAGATGAAGGCATAGGAGCAACTGAGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp AGAACACAGGGTCATTTTTCTACTGCTAATCTCGTTTCAGAGCAGCACCTGTTTCGGTGGCTGAGCCCATaGAATTTGTACGGACACGCT +
Preference number: 4 (lower is better)
Translates to: RTQGHFSTANLVSEQHLFRWLSP*NLYGHA
Trigger: AGCGTGTCCGTACAAATTCCATGGGCTCAGCCACCG...AAACAGGTGCTGCTCTGAAACGAGATTAGCAGTAGAAAAATGACCCTGTGTTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp GTTAGAGCCACCTACCTTCCTGCTCTCAAACTGTCACTTTTGACATTCTTGTTTTTTGTCTTTAGGGGCTaGCCCTCCATTCCTGCCTGG +
Preference number: 4 (lower is better)
Translates to: VRATYLPALKLSLLTFLFFVFRG*PSIPAW
Trigger: CCAGGCAGGAATGGAGGGCCAGCCCCTAAAGACAAA...AAACAAGAATGTCAAAAGTGACAGTTTGAGAGCAGGAAGGTAGGTGGCTCTAAC
48% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR TCA 90 bp TCTCTCAGTTGCTCCTATGCCTTCATCTCCATAGATGACCACAACAAAACTGTGAGAGGCCTTTTGTGCTaGATTTGCTCGAAGGGGAAG +
Preference number: 4 (lower is better)
Translates to: SLSCSYAFISIDDHNKTVRGLLC*ICSKGK
Trigger: CTTCCCCTTCGAGCAAATTCAGCACAAAAGGCCTCT...CACAGTTTTGTTGTGGTCATCTATGGAGATGAAGGCATAGGAGCAACTGAGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR TCA 90 bp TCTCTCAGTTGCTCCTATGCCTTCATCTCCATAGATGACCACAACAAAACTGTGGAGAGTTGGTGGAATTaGGGGCTTTTGCTTCCACTC +
Preference number: 4 (lower is better)
Translates to: SLSCSYAFISIDDHNKTVESWWN*GLLLPL
Trigger: GAGTGGAAGCAAAAGCCCTCAATTCCACCAACTCTC...CACAGTTTTGTTGTGGTCATCTATGGAGATGAAGGCATAGGAGCAACTGAGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp AGTAAGGGTAATGGGTTAGATAAGATGTTATCTCCAACATCTACCTCCACGAATACTGGCACCATCTCCTaGGCGACCCTGCACCTCTTT +
Preference number: 4 (lower is better)
Translates to: SKGNGLDKMLSPTSTSTNTGTIS*ATLHLF
Trigger: AAAGAGGTGCAGGGTCGCGCAGGAGATGGTGCCAGT...ATTCGTGGAGGTAGATGTTGGAGATAACATCTTATCTAACCCATTACCCTTACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp GTAGGCTTAGTGGAGACTACATGTACAAGTATAAGATGGGGAAATGAGGAAGTATGTTGTCTGGTAGTGTaGCCACAGCATTGGGGGCTG +
Preference number: 4 (lower is better)
Translates to: VGLVETTCTSIRWGNEEVCCLVV*PQHWGL
Trigger: CAGCCCCCAATGCTGTGGCCACACTACCAGACAACA...TACTTCCTCATTTCCCCATCTTATACTTGTACATGTAGTCTCCACTAAGCCTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp GTTAGAGCCACCTACCTTCCTGCTCTCAAACTGTCACTTTTGACATTCTTGTTTCCTTCCCGTCTTCCTTaGGAACAGAGTCCTTACTCC +
Preference number: 4 (lower is better)
Translates to: VRATYLPALKLSLLTFLFPSRLP*EQSPYS
Trigger: GGAGTAAGGACTCTGTTCCCAAGGAAGACGGGAAGG...AAACAAGAATGTCAAAAGTGACAGTTTGAGAGCAGGAAGGTAGGTGGCTCTAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp GGAGTTTCCACAGCTGGAGCTGTAGTGTATGTAATACTACTTCAGAGCGGGAAGGGGAGAAAGAATAGCTaGAAGGCAAATAGGAACCTG +
Preference number: 4 (lower is better)
Translates to: GVSTAGAVVYVILLQSGKGRKNS*KANRNL
Trigger: CAGGTTCCTATTTGCCTTCCAGCTATTCTTTCTCCC...CTTCCCGCTCTGAAGTAGTATTACATACACTACAGCTCCAGCTGTGGAAACTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp GGTGGCTTAGTGAGAGGCTTGGTTTGGTGGTCTGCACCAGATCCTGTCTTTCTGTTTTATCACTTATCGTaGGAGACTTGCTCTTGTAGT +
Preference number: 4 (lower is better)
Translates to: GGLVRGLVWWSAPDPVFLFYHLS*ETCSCS
Trigger: ACTACAAGAGCAAGTCTCCCACGATAAGTGATAAAA...CAGAAAGACAGGATCTGGTGCAGACCACCAAACCAAGCCTCTCACTAAGCCACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
3UTR CAA 72 bp CAGGGTACCCTCTTACCCTTCTATGTTTCTTTGACCTaGAGATGTGTGGAGAGAGTAGGCTTAGTGGAGACT +
Preference number: 4 (lower is better)
Translates to: QGTLLPFYVSLT*RCVERVGLVET
Trigger: AGTCTCCACTAAGCCTACTCTCTCCACACATCTCAAGGTCAAAGAAACATAGAAGGGTAAGAGGGTACCCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR TCA 90 bp AGTAAGGGTAATGGGTTAGATAAGATGTTATCTCCAACATCTACCTCCACGAATGCACTTCCATCATACTaGCTACCCCGTCCTCCCAAG +
Preference number: 4 (lower is better)
Translates to: SKGNGLDKMLSPTSTSTNALPSY*LPRPPK
Trigger: CTTGGGAGGACGGGGTAGTCAGTATGATGGAAGTGC...ATTCGTGGAGGTAGATGTTGGAGATAACATCTTATCTAACCCATTACCCTTACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR TCA 90 bp GTAGGCTTAGTGGAGACTACATGTACAAGTATAAGATGGGGAAATGAGGAAGTATTTCCGCTTATTGGCTaGGGAAGGGCTGGCTTTGAC +
Preference number: 4 (lower is better)
Translates to: VGLVETTCTSIRWGNEEVFPLIG*GRAGFD
Trigger: GTCAAAGCCAGCCCTTCCTCAGCCAATAAGCGGAAA...TACTTCCTCATTTCCCCATCTTATACTTGTACATGTAGTCTCCACTAAGCCTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp AGAACACAGGGTCATTTTTCTACTGCTAATCTCGTTTCAGAGCAGCACCTGTTTGTACGGACCATGATCTaGTCACAGGGAGATGAGATG +
Preference number: 4 (lower is better)
Translates to: RTQGHFSTANLVSEQHLFVRTMI*SQGDEM
Trigger: CATCTCATCTCCCTGTGAGCAGATCATGGTCCGTAC...AAACAGGTGCTGCTCTGAAACGAGATTAGCAGTAGAAAAATGACCCTGTGTTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp TGTGTTATAAAGACACTCCTCATATTGGCACGTACGGAGTTACAGAGTGAACTGTTTGATTCCATCTCCTaGTGCGTCTCTGAACGGGCT +
Preference number: 4 (lower is better)
Translates to: CVIKTLLILARTELQSELFDSIS*CVSERA
Trigger: AGCCCGTTCAGAGACGCAGCAGGAGATGGAATCAAA...CAGTTCACTCTGTAACTCCGTACGTGCCAATATGAGGAGTGTCTTTATAACACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp TCTCTCAGTTGCTCCTATGCCTTCATCTCCATAGATGACCACAACAAAACTGTGCAGATGGGGGTAGCTTaGAGTCACTACTTGTGCTTT +
Preference number: 4 (lower is better)
Translates to: SLSCSYAFISIDDHNKTVQMGVA*SHYLCF
Trigger: AAAGCACAAGTAGTGACTGCAAGCTACCCCCATCTG...CACAGTTTTGTTGTGGTCATCTATGGAGATGAAGGCATAGGAGCAACTGAGAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp AGAACACAGGGTCATTTTTCTACTGCTAATCTCGTTTCAGAGCAGCACCTGTTTCACCTGAGACCTTGCTaGCATACGGGGAGAAAGAAT +
Preference number: 4 (lower is better)
Translates to: RTQGHFSTANLVSEQHLFHLRPC*HTGRKN
Trigger: ATTCTTTCTCCCCGTATGGCAGCAAGGTCTCAGGTG...AAACAGGTGCTGCTCTGAAACGAGATTAGCAGTAGAAAAATGACCCTGTGTTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp AGAACACAGGGTCATTTTTCTACTGCTAATCTCGTTTCAGAGCAGCACCTGTTTGTATCCCCACCTCCTTaGAGCCTGACATTTCCAGTT +
Preference number: 4 (lower is better)
Translates to: RTQGHFSTANLVSEQHLFVSPPP*SLTFPV
Trigger: AACTGGAAATGTCAGGCTCCAAGGAGGTGGGGATAC...AAACAGGTGCTGCTCTGAAACGAGATTAGCAGTAGAAAAATGACCCTGTGTTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp TCTCTCAGTTGCTCCTATGCCTTCATCTCCATAGATGACCACAACAAAACTGTGTCTCCTTTTCCTTTTTaGAGCCAGCTACACTGCGTG +
Preference number: 4 (lower is better)
Translates to: SLSCSYAFISIDDHNKTVSPFPF*SQLHCV
Trigger: CACGCAGTGTAGCTGGCTCCAAAAAGGAAAAGGAGA...CACAGTTTTGTTGTGGTCATCTATGGAGATGAAGGCATAGGAGCAACTGAGAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp GTAGGCTTAGTGGAGACTACATGTACAAGTATAAGATGGGGAAATGAGGAAGTAATTCTCCCCTTCCTCTaGCTCCGGCTTAGTTCCCAA +
Preference number: 4 (lower is better)
Translates to: VGLVETTCTSIRWGNEEVILPFL*LRLSSQ
Trigger: TTGGGAACTAAGCCGGAGCCAGAGGAAGGGGAGAAT...TACTTCCTCATTTCCCCATCTTATACTTGTACATGTAGTCTCCACTAAGCCTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR TCA 90 bp GTTAGAGCCACCTACCTTCCTGCTCTCAAACTGTCACTTTTGACATTCTTGTTTCCATCTTTTCAGACTTaGCTTTCTTTAGTGGCCGGC +
Preference number: 4 (lower is better)
Translates to: VRATYLPALKLSLLTFLFPSFQT*LSLVAG
Trigger: GCCGGCCACTAAAGAAAGTCAAGTCTGAAAAGATGG...AAACAAGAATGTCAAAAGTGACAGTTTGAGAGCAGGAAGGTAGGTGGCTCTAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR TCA 90 bp TCTCTCAGTTGCTCCTATGCCTTCATCTCCATAGATGACCACAACAAAACTGTGATTCAGCTCCATGTCTaGAAGAGGTTTGCTTTTCCG +
Preference number: 4 (lower is better)
Translates to: SLSCSYAFISIDDHNKTVIQLHV*KRFAFP
Trigger: CGGAAAAGCAAACCTCTTTCAGACATGGAGCTGAAT...CACAGTTTTGTTGTGGTCATCTATGGAGATGAAGGCATAGGAGCAACTGAGAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp GTAGGCTTAGTGGAGACTACATGTACAAGTATAAGATGGGGAAATGAGGAAGTAGCTGCTGACTGGAATTaGTCAGCTCCGGCTTCTTTT +
Preference number: 4 (lower is better)
Translates to: VGLVETTCTSIRWGNEEVAADWN*SAPASF
Trigger: AAAAGAAGCCGGAGCTGAGCAATTCCAGTCAGCAGC...TACTTCCTCATTTCCCCATCTTATACTTGTACATGTAGTCTCCACTAAGCCTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp CTCTTGGGCTTTGTGCTTAATGTCTCCCACCACCCCACTTTCCCAAAGAAGTTAGGACTGTGCATAACCTaGAGAGTAGTAACTTTCAAA +
Preference number: 4 (lower is better)
Translates to: LLGFVLNVSHHPTFPKKLGLCIT*RVVTFK
Trigger: TTTGAAAGTTACTACTCTCCAGGTTATGCACAGTCC...TAACTTCTTTGGGAAAGTGGGGTGGTGGGAGACATTAAGCACAAAGCCCAAGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp GTTAGAGCCACCTACCTTCCTGCTCTCAAACTGTCACTTTTGACATTCTTGTTTGACATTTCCAGTTTCTaGTGGTCCTTTTCCAGATCG +
Preference number: 4 (lower is better)
Translates to: VRATYLPALKLSLLTFLFDISSF*WSFSRS
Trigger: CGATCTGGAAAAGGACCAGCAGAAACTGGAAATGTC...AAACAAGAATGTCAAAAGTGACAGTTTGAGAGCAGGAAGGTAGGTGGCTCTAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CCA 90 bp GGAGTTTCCACAGCTGGAGCTGTAGTGTATGTAATACTACTTCAGAGCGGGAAGTTTCAGATTTCAGACTaGAGGGCTTTTTACACTTTT +
Preference number: 4 (lower is better)
Translates to: GVSTAGAVVYVILLQSGKFQISD*RAFYTF
Trigger: AAAAGTGTAAAAAGCCCTCCAGTCTGAAATCTGAAA...CTTCCCGCTCTGAAGTAGTATTACATACACTACAGCTCCAGCTGTGGAAACTCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR TCA 90 bp AGTAAGGGTAATGGGTTAGATAAGATGTTATCTCCAACATCTACCTCCACGAATGATCATCCTCTGACTTaGTGTCTGAGTATTTGGCAG +
Preference number: 4 (lower is better)
Translates to: SKGNGLDKMLSPTSTSTNDHPLT*CLSIWQ
Trigger: CTGCCAAATACTCAGACATCAAGTCAGAGGATGATC...ATTCGTGGAGGTAGATGTTGGAGATAACATCTTATCTAACCCATTACCCTTACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR GCA 90 bp AGTAAGGGTAATGGGTTAGATAAGATGTTATCTCCAACATCTACCTCCACGAATAGTCAAAGGCATCATTaGTTGTTTCATCCATTACCG +
Preference number: 4 (lower is better)
Translates to: SKGNGLDKMLSPTSTSTNSQRHH*LFHPLP
Trigger: CGGTAATGGATGAAACAAGCAATGATGCCTTTGACT...ATTCGTGGAGGTAGATGTTGGAGATAACATCTTATCTAACCCATTACCCTTACT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS GCA 90 bp GGTGGTGGTGGTGGTGTGTGGACATCAGGCGCTGGGAAGGGGATGTaGGGGGCCGGTCGGCACTCCTGTCAGTACCTCCTGCTCCCGCAA +
Preference number: 5 (lower is better)
Translates to: GGGGGVWTSGAGKGM*GAGRHSCQYLLLPQ
Trigger: TTGCGGGAGCAGGAGGTACTGACAGGAGTGCCGACCGGCCCCGCACATCCCCTTCCCAGCGCCTGATGTCCACACACCACCACCACCACC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 90 bp GGACTGGTGCTGGGTGAGCGGGGAGGACACAGGCACATGGACACTTaGTCGGGGCTCCTTGCTCCCGAGGCGGGATTCCTCAGATGGGGG +
Preference number: 5 (lower is better)
Translates to: GLVLGERGGHRHMDT*SGLLAPEAGFLRWG
Trigger: CCCCCATCTGAGGAATCCCGCCTCGGGAGCAAGGAGCCCCGACCAAGTGTCCATGTGCCTGTGTCCTCCCCGCTCACCCAGCACCAGTCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS GCA 90 bp GGGAGCAACAGCAGCAACCAGGCCTCCCGCACTGGCACCATCTCCTaGGCGACCCTGCACCTCTTTCTTGCTGGCTGCTCCCTCACTTGG +
Preference number: 5 (lower is better)
Translates to: GSNSSNQASRTGTIS*ATLHLFLAGCSLTW
Trigger: CCAAGTGAGGGAGCAGCCAGCAAGAAAGAGGTGCAGGGTCGCGCAGGAGATGGTGCCAGTGCGGGAGGCCTGGTTGCTGCTGTTGCTCCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS GCA 90 bp GGCTACCCCGACGGCCTTTGCTATTGGCTCCTGCTCGGGTCTTGCTaGTGCTGCTGGTCCCTTTGCTGTCAGAGGCTGCGGCTGCCTCAC +
Preference number: 5 (lower is better)
Translates to: GYPDGLCYWLLLGSC*CCWSLCCQRLRLPH
Trigger: GTGAGGCAGCCGCAGCCTCTGACAGCAAAGGGACCAGCAGCAGCAGCAAGACCCGAGCAGGAGCCAATAGCAAAGGCCGTCGGGGTAGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp CGTGCTTGGGGTCCCTCCCAGGTGTGTGTTGCTGCTCTGGCAGCAGACCAGGGGGTCCCTGGAGTGGGCTaGCTAGCGTCTTTGCCACTC +
Preference number: 5 (lower is better)
Translates to: RAWGPSQVCVAALAADQGVPGVG*LASLPL
Trigger: GAGTGGCAAAGACGCTAGCAAGCCCACTCCAGGGAC...CCCCTGGTCTGCTGCCAGAGCAGCAACACACACCTGGGAGGGACCCCAAGCACG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS GCA 90 bp CAGGAGGGCGGTGCTCTGAGGAGTTCTGGCTACCCCGACGGCCTTTaGTATTGGCTCCTGCTCGGGTCTTGCTGCTGCTGCTGGTCCCTT +
Preference number: 5 (lower is better)
Translates to: QEGGALRSSGYPDGL*YWLLLGSCCCCWSL
Trigger: AAGGGACCAGCAGCAGCAGCAAGACCCGAGCAGGAGCCAATAGCAAAGGCCGTCGGGGTAGCCAGAACTCCTCAGAGCACCGCCCTCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 90 bp CCACACTCAGTGCCCGTCTTAGCCTCAGACGCCTCCTTGCCTAGGTaGCTGGCCTCACCCAGCTTCCCTTTAAGGCCTTCAGGGGGCTGG +
Preference number: 5 (lower is better)
Translates to: PHSVPVLASDASLPR*LASPSFPLRPSGGW
Trigger: CCAGCCCCCTGAAGGCCTTAAAGGGAAGCTGGGTGAGGCCAGCCACCTAGGCAAGGAGGCGTCTGAGGCTAAGACGGGCACTGAGTGTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 90 bp CCAGGGCTTTGGACTCTGAGCTGGCTTTACAGCTCACACTGGGGCTaGCACGGGCCTTGTCAGCGTCCTCGCCACCTGAGACCTTGCTGC +
Preference number: 5 (lower is better)
Translates to: PGLWTLSWLYSSHWG*HGPCQRPRHLRPCC
Trigger: GCAGCAAGGTCTCAGGTGGCGAGGACGCTGACAAGGCCCGTGCCAGCCCCAGTGTGAGCTGTAAAGCCAGCTCAGAGTCCAAAGCCCTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS TCA 90 bp AGACTTGGCAGGATCTGTCCCAGGCTCCTTGGCCTTGCCGGGCCCTaGCTTCACCAGGTCTGTCAGGCTGGGAGCCTTGGTGAGAGTTGG +
Preference number: 5 (lower is better)
Translates to: RLGRICPRLLGLAGP*LHQVCQAGSLGESW
Trigger: CCAACTCTCACCAAGGCTCCCAGCCTGACAGACCTGGTGAAGTCAGGGCCCGGCAAGGCCAAGGAGCCTGGGACAGATCCTGCCAAGTCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS GCA 90 bp GGTCTTGCTGCTGCTGCTGGTCCCTTTGCTGTCAGAGGCTGCGGCTaGCTCACTGACAGGTGTGTTACTGCTGGGACGCATGCGCTTGCC +
Preference number: 5 (lower is better)
Translates to: GLAAAAGPFAVRGCG*LTDRCVTAGTHALA
Trigger: GGCAAGCGCATGCGTCCCAGCAGTAACACACCTGTCAGTGAGGCAGCCGCAGCCTCTGACAGCAAAGGGACCAGCAGCAGCAGCAAGACC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 90 bp GGCGGTGCTCTGAGGAGTTCTGGCTACCCCGACGGCCTTTGCTATTaGCTCCTGCTCGGGTCTTGCTGCTGCTGCTGGTCCCTTTGCTGT +
Preference number: 5 (lower is better)
Translates to: GGALRSSGYPDGLCY*LLLGSCCCCWSLCC
Trigger: ACAGCAAAGGGACCAGCAGCAGCAGCAAGACCCGAGCAGGAGCCAATAGCAAAGGCCGTCGGGGTAGCCAGAACTCCTCAGAGCACCGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp CGTGCTTGGGGTCCCTCCCAGGTGTGTGTTGCTGCTCTGGCAGCAGACCAGGGGGCAGGGCTATTGGTTTaGACTGAGCTGGCTTCGGCT +
Preference number: 5 (lower is better)
Translates to: RAWGPSQVCVAALAADQGAGLLV*TELASA
Trigger: AGCCGAAGCCAGCTCAGTCAAAACCAATAGCCCTGC...CCCCTGGTCTGCTGCCAGAGCAGCAACACACACCTGGGAGGGACCCCAAGCACG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS TCA 90 bp AGCGGCTCCACGGTTCCTGTGTCCATCCCTGCACTTCCATCATACTaGCTACCCCGTCCTCCCAAGGGAACTGGCTGGAGGACCCCAGGA +
Preference number: 5 (lower is better)
Translates to: SGSTVPVSIPALPSY*LPRPPKGTGWRTPG
Trigger: TCCTGGGGTCCTCCAGCCAGTTCCCTTGGGAGGACGGGGTAGTCAGTATGATGGAAGTGCAGGGATGGACACAGGAACCGTGGAGCCGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS TCA 90 bp TGCTGCTGCTGGTCCCTTTGCTGTCAGAGGCTGCGGCTGCCTCACTaGCAGGTGTGTTACTGCTGGGACGCATGCGCTTGCCTCTTCCTC +
Preference number: 5 (lower is better)
Translates to: CCCWSLCCQRLRLPH*QVCYCWDACACLFL
Trigger: GAGGAAGAGGCAAGCGCATGCGTCCCAGCAGTAACACACCTGTCAGTGAGGCAGCCGCAGCCTCTGACAGCAAAGGGACCAGCAGCAGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS GCA 90 bp TCCCGCTCTTTCAGGCCCATCTCTGTCTTCTTGTCCAGTCCCCGCTaGTGCTGCTGCTGCTGCTCCAGGCTCTGCCGCTTCTGCTGTTCT +
Preference number: 5 (lower is better)
Translates to: SRSFRPISVFLSSPR*CCCCCSRLCRFCCS
Trigger: AGAACAGCAGAAGCGGCAGAGCCTGGAGCAGCAGCAGCAGCAGCAGCGGGGACTGGACAAGAAGACAGAGATGGGCCTGAAAGAGCGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 90 bp CCGCACTGGCACCATCTCCTGCGCGACCCTGCACCTCTTTCTTGCTaGCTGCTCCCTCACTTGGAGAGAACAAGGAAGTCCCTGGAGTGG +
Preference number: 5 (lower is better)
Translates to: PHWHHLLRDPAPLSC*LLPHLERTRKSLEW
Trigger: CCACTCCAGGGACTTCCTTGTTCTCTCCAAGTGAGGGAGCAGCCAGCAAGAAAGAGGTGCAGGGTCGCGCAGGAGATGGTGCCAGTGCGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 90 bp TGGGTTCTACCTTGGTCCCAGGGAGGGGCCCGGTGGCTGAGCCCATaGAATTTGTACGGACACGCTTGCTCCCTTTGGAGTCCTCTGAGC +
Preference number: 5 (lower is better)
Translates to: WVLPWSQGGARWLSP*NLYGHACSLWSPLS
Trigger: GCTCAGAGGACTCCAAAGGGAGCAAGCGTGTCCGTACAAATTCCATGGGCTCAGCCACCGGGCCCCTCCCTGGGACCAAGGTAGAACCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 90 bp GACAGTCAATCAGGACCGGGGAGGGACAATTTCTGTCCACAAGAGTaGGTTCTACCTTGGTCCCAGGGAGGGGCCCGGTGGCTGAGCCCA +
Preference number: 5 (lower is better)
Translates to: DSQSGPGRDNFCPQE*VLPWSQGGARWLSP
Trigger: TGGGCTCAGCCACCGGGCCCCTCCCTGGGACCAAGGTAGAACCCACTCTTGTGGACAGAAATTGTCCCTCCCCGGTCCTGATTGACTGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 90 bp AGATGTCCAGGGCTTTGGACTCTGAGCTGGCTTTACAGCTCACACTaGGGCTGGCACGGGCCTTGTCAGCGTCCTCGCCACCTGAGACCT +
Preference number: 5 (lower is better)
Translates to: RCPGLWTLSWLYSSH*GWHGPCQRPRHLRP
Trigger: AGGTCTCAGGTGGCGAGGACGCTGACAAGGCCCGTGCCAGCCCCAGTGTGAGCTGTAAAGCCAGCTCAGAGTCCAAAGCCCTGGACATCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp CGTGCTTGGGGTCCCTCCCAGGTGTGTGTTGCTGCTCTGGCAGCAGACCAGGGGTTAGTTCCCAAAGGATaGAGCGCTGCCCCAGGTTCA +
Preference number: 5 (lower is better)
Translates to: RAWGPSQVCVAALAADQGLVPKG*SAAPGS
Trigger: TGAACCTGGGGCAGCGCTCAATCCTTTGGGAACTAA...CCCCTGGTCTGCTGCCAGAGCAGCAACACACACCTGGGAGGGACCCCAAGCACG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp AGGGATAAGGCCTGGGAGGGGCCCATGGCAGGGAATCACTGGAAAGTTTCCTTGCTGGGACGCATGCGCTaGCCTCTTCCTCGGCCGTTC +
Preference number: 5 (lower is better)
Translates to: RDKAWEGPMAGNHWKVSLLGRMR*PLPRPF
Trigger: GAACGGCCGAGGAAGAGGCAAGCGCATGCGTCCCAG...CAAGGAAACTTTCCAGTGATTCCCTGCCATGGGCCCCTCCCAGGCCTTATCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS TCA 90 bp CACAAGAGTGGGTTCTACCTTGGTCCCAGGGAGGGGCCCGGTGGCTaGGCCCATGGAATTTGTACGGACACGCTTGCTCCCTTTGGAGTC +
Preference number: 5 (lower is better)
Translates to: HKSGFYLGPREGPGG*AHGICTDTLAPFGV
Trigger: GACTCCAAAGGGAGCAAGCGTGTCCGTACAAATTCCATGGGCTCAGCCACCGGGCCCCTCCCTGGGACCAAGGTAGAACCCACTCTTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS GCA 90 bp CCCATCTCTGTCTTCTTGTCCAGTCCCCGCTGCTGCTGCTGCTGCTaGTCCAGGCTCTGCCGCTTCTGCTGTTCTTCATACTGCTGCCGA +
Preference number: 5 (lower is better)
Translates to: PISVFLSSPRCCCCC*SRLCRFCCSSYCCR
Trigger: TCGGCAGCAGTATGAAGAACAGCAGAAGCGGCAGAGCCTGGAGCAGCAGCAGCAGCAGCAGCGGGGACTGGACAAGAAGACAGAGATGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS GCA 90 bp AGGCCCATCTCTGTCTTCTTGTCCAGTCCCCGCTGCTGCTGCTGCTaGTGCTCCAGGCTCTGCCGCTTCTGCTGTTCTTCATACTGCTGC +
Preference number: 5 (lower is better)
Translates to: RPISVFLSSPRCCCC*CSRLCRFCCSSYCC
Trigger: GCAGCAGTATGAAGAACAGCAGAAGCGGCAGAGCCTGGAGCAGCAGCAGCAGCAGCAGCGGGGACTGGACAAGAAGACAGAGATGGGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS GCA 90 bp TCGAGACTCCGTCTCCTGTCGGTACCAGAGTATTGGATCCACCTCTaGCTGTCGGCCACACTCAGTGCCCGTCTTAGCCTCAGACGCCTC +
Preference number: 5 (lower is better)
Translates to: SRLRLLSVPEYWIHL*LSATLSARLSLRRL
Trigger: GAGGCGTCTGAGGCTAAGACGGGCACTGAGTGTGGCCGACAGGCAGAGGTGGATCCAATACTCTGGTACCGACAGGAGACGGAGTCTCGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 90 bp GCATGCGCTTGCCTCTTCCTCGGCCGTTCCGCATTTCCAAGTCACTaGTGGGGGAGTCACAGAACCTTGGGGGTGCCCAATCATGCCTTG +
Preference number: 5 (lower is better)
Translates to: ACACLFLGRSAFPSH*WGSHRTLGVPNHAL
Trigger: CAAGGCATGATTGGGCACCCCCAAGGTTCTGTGACTCCCCCACCAGTGACTTGGAAATGCGGAACGGCCGAGGAAGAGGCAAGCGCATGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 90 bp TGTCCACAAGAGTGGGTTCTACCTTGGTCCCAGGGAGGGGCCCGGTaGCTGAGCCCATGGAATTTGTACGGACACGCTTGCTCCCTTTGG +
Preference number: 5 (lower is better)
Translates to: CPQEWVLPWSQGGAR*LSPWNLYGHACSLW
Trigger: CCAAAGGGAGCAAGCGTGTCCGTACAAATTCCATGGGCTCAGCCACCGGGCCCCTCCCTGGGACCAAGGTAGAACCCACTCTTGTGGACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 90 bp GGACCGGGGAGGGACAATTTCTGTCCACAAGAGTGGGTTCTACCTTaGTCCCAGGGAGGGGCCCGGTGGCTGAGCCCATGGAATTTGTAC +
Preference number: 5 (lower is better)
Translates to: GPGRDNFCPQEWVLP*SQGGARWLSPWNLY
Trigger: GTACAAATTCCATGGGCTCAGCCACCGGGCCCCTCCCTGGGACCAAGGTAGAACCCACTCTTGTGGACAGAAATTGTCCCTCCCCGGTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp AGGGATAAGGCCTGGGAGGGGCCCATGGCAGGGAATCACTGGAAAGTTTCCTTGGGGGACTGTTGGGCATaGCTTGGACCACGGTGGTGG +
Preference number: 5 (lower is better)
Translates to: RDKAWEGPMAGNHWKVSLGDCWA*LGPRWW
Trigger: CCACCACCGTGGTCCAAGCAATGCCCAACAGTCCCC...CAAGGAAACTTTCCAGTGATTCCCTGCCATGGGCCCCTCCCAGGCCTTATCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS TCA 90 bp CAGGGGACAAGGATCCTTTCTGTGGGACAGGTGCACCGTTGCAGCTaGGGTCTGCATGGAGGGCGGGCTCTTCTCCATACTCACTGTCTC +
Preference number: 5 (lower is better)
Translates to: QGTRILSVGQVHRCS*GLHGGRALLHTHCL
Trigger: GAGACAGTGAGTATGGAGAAGAGCCCGCCCTCCATGCAGACCTCAGCTGCAACGGTGCACCTGTCCCACAGAAAGGATCCTTGTCCCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS GCA 90 bp CTCCCCTTCCTCTGGCTCCGGCTTAGTTCCCAAAGGATTGAGCGCTaGCCCAGGTTCAATAGCTATACTCCCAAGCGGCTCCACGGTTCC +
Preference number: 5 (lower is better)
Translates to: LPFLWLRLSSQRIER*PRFNSYTPKRLHGS
Trigger: GGAACCGTGGAGCCGCTTGGGAGTATAGCTATTGAACCTGGGGCAGCGCTCAATCCTTTGGGAACTAAGCCGGAGCCAGAGGAAGGGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS GCA 90 bp GGGGCTCCTTGCTCCCGAGGCGGGATTCCTCAGATGGGGGTAGCTTaGAGTCACTACTTGTGCTTTCCTTCCCGTCTTCCTTGGGAACAG +
Preference number: 5 (lower is better)
Translates to: GAPCSRGGIPQMGVA*SHYLCFPSRLPWEQ
Trigger: CTGTTCCCAAGGAAGACGGGAAGGAAAGCACAAGTAGTGACTGCAAGCTACCCCCATCTGAGGAATCCCGCCTCGGGAGCAAGGAGCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 90 bp GACTGGCATGTTGCTGCAAGATGTCCAGGGCTTTGGACTCTGAGCTaGCTTTACAGCTCACACTGGGGCTGGCACGGGCCTTGTCAGCGT +
Preference number: 5 (lower is better)
Translates to: DWHVAARCPGLWTLS*LYSSHWGWHGPCQR
Trigger: ACGCTGACAAGGCCCGTGCCAGCCCCAGTGTGAGCTGTAAAGCCAGCTCAGAGTCCAAAGCCCTGGACATCTTGCAGCAACATGCCAGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp CGTGCTTGGGGTCCCTCCCAGGTGTGTGTTGCTGCTCTGGCAGCAGACCAGGGGACTGGGGTGACAAACTaGATGTTGTCTGGTAGTGTG +
Preference number: 5 (lower is better)
Translates to: RAWGPSQVCVAALAADQGTGVTN*MLSGSV
Trigger: CACACTACCAGACAACATCAAGTTTGTCACCCCAGT...CCCCTGGTCTGCTGCCAGAGCAGCAACACACACCTGGGAGGGACCCCAAGCACG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp AGGGATAAGGCCTGGGAGGGGCCCATGGCAGGGAATCACTGGAAAGTTTCCTTGCCCATCTCTGTCTTCTaGTCCAGTCCCCGCTGCTGC +
Preference number: 5 (lower is better)
Translates to: RDKAWEGPMAGNHWKVSLPISVF*SSPRCC
Trigger: GCAGCAGCGGGGACTGGACAAGAAGACAGAGATGGG...CAAGGAAACTTTCCAGTGATTCCCTGCCATGGGCCCCTCCCAGGCCTTATCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp GTATGTAATACTACTTCAGAGCGGGAAGACCGGACTCAGACTAGGGACCAGGAGCCAGGCTCCTTGGCCTaGCCGGGCCCTGACTTCACC +
Preference number: 5 (lower is better)
Translates to: VCNTTSEREDRTQTRDQEPGSLA*PGPDFT
Trigger: GGTGAAGTCAGGGCCCGGCAAGGCCAAGGAGCCTGG...CTCCTGGTCCCTAGTCTGAGTCCGGTCTTCCCGCTCTGAAGTAGTATTACATAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp GTATGTAATACTACTTCAGAGCGGGAAGACCGGACTCAGACTAGGGACCAGGAGTCTGTCCCAGGCTCCTaGGCCTTGCCGGGCCCTGAC +
Preference number: 5 (lower is better)
Translates to: VCNTTSEREDRTQTRDQESVPGS*ALPGPD
Trigger: GTCAGGGCCCGGCAAGGCCAAGGAGCCTGGGACAGA...CTCCTGGTCCCTAGTCTGAGTCCGGTCTTCCCGCTCTGAAGTAGTATTACATAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS TCA 90 bp CACCAGGTCTGTCAGGCTGGGAGCCTTGGTGAGAGTTGGTGGAATTaGGGGCTTTTGCTTCCACTCTTCCTTGAGCGATGCCTCCCGCTC +
Preference number: 5 (lower is better)
Translates to: HQVCQAGSLGESWWN*GLLLPLFLERCLPL
Trigger: GAGCGGGAGGCATCGCTCAAGGAAGAGTGGAAGCAAAAGCCCTCAATTCCACCAACTCTCACCAAGGCTCCCAGCCTGACAGACCTGGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS TCA 90 bp GTAGTGACTGGCATGTTGCTGCAAGATGTCCAGGGCTTTGGACTCTaGGCTGGCTTTACAGCTCACACTGGGGCTGGCACGGGCCTTGTC +
Preference number: 5 (lower is better)
Translates to: VVTGMLLQDVQGFGL*AGFTAHTGAGTGLV
Trigger: GACAAGGCCCGTGCCAGCCCCAGTGTGAGCTGTAAAGCCAGCTCAGAGTCCAAAGCCCTGGACATCTTGCAGCAACATGCCAGTCACTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS GCA 90 bp CAAGGATCCTTTCTGTGGGACAGGTGCACCGTTGCAGCTGAGGTCTaGATGGAGGGCGGGCTCTTCTCCATACTCACTGTCTCCATCAGC +
Preference number: 5 (lower is better)
Translates to: QGSFLWDRCTVAAEV*MEGGLFSILTVSIS
Trigger: GCTGATGGAGACAGTGAGTATGGAGAAGAGCCCGCCCTCCATGCAGACCTCAGCTGCAACGGTGCACCTGTCCCACAGAAAGGATCCTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS GCA 90 bp GTCAGGCTGGGAGCCTTGGTGAGAGTTGGTGGAATTGAGGGCTTTTaGTTCCACTCTTCCTTGAGCGATGCCTCCCGCTCTTTCAGGCCC +
Preference number: 5 (lower is better)
Translates to: VRLGALVRVGGIEGF*FHSSLSDASRSFRP
Trigger: GGGCCTGAAAGAGCGGGAGGCATCGCTCAAGGAAGAGTGGAAGCAAAAGCCCTCAATTCCACCAACTCTCACCAAGGCTCCCAGCCTGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 90 bp GATCCTTTCTGTGGGACAGGTGCACCGTTGCAGCTGAGGTCTGCATaGAGGGCGGGCTCTTCTCCATACTCACTGTCTCCATCAGCTTCC +
Preference number: 5 (lower is better)
Translates to: DPFCGTGAPLQLRSA*RAGSSPYSLSPSAS
Trigger: GGAAGCTGATGGAGACAGTGAGTATGGAGAAGAGCCCGCCCTCCATGCAGACCTCAGCTGCAACGGTGCACCTGTCCCACAGAAAGGATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp CGTGCTTGGGGTCCCTCCCAGGTGTGTGTTGCTGCTCTGGCAGCAGACCAGGGGCAAAGGCATCATTGCTaGTTTCATCCATTACCGAGG +
Preference number: 5 (lower is better)
Translates to: RAWGPSQVCVAALAADQGQRHHC*FHPLPR
Trigger: CCTCGGTAATGGATGAAACAAGCAATGATGCCTTTG...CCCCTGGTCTGCTGCCAGAGCAGCAACACACACCTGGGAGGGACCCCAAGCACG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp GGTGGCTTAGTGAGAGGCTTGGTTTGGTGGTCTGCACCAGATCCTGTCTTTCTGGGGGTCAGGGCAGGGTaGACTGTGAAAGGCTCTCCC +
Preference number: 5 (lower is better)
Translates to: GGLVRGLVWWSAPDPVFLGVRAG*TVKGSP
Trigger: GGGAGAGCCTTTCACAGTCAACCCTGCCCTGACCCC...CAGAAAGACAGGATCTGGTGCAGACCACCAAACCAAGCCTCTCACTAAGCCACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS GCA 90 bp CGAGGCGGGATTCCTCAGATGGGGGTAGCTTGCAGTCACTACTTGTaGTTTCCTTCCCGTCTTCCTTGGGAACAGAGTCCTTACTCCGGC +
Preference number: 5 (lower is better)
Translates to: RGGIPQMGVACSHYL*FPSRLPWEQSPYSG
Trigger: GCCGGAGTAAGGACTCTGTTCCCAAGGAAGACGGGAAGGAAAGCACAAGTAGTGACTGCAAGCTACCCCCATCTGAGGAATCCCGCCTCG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 90 bp TGCTCTTGTAGTGACTGGCATGTTGCTGCAAGATGTCCAGGGCTTTaGACTCTGAGCTGGCTTTACAGCTCACACTGGGGCTGGCACGGG +
Preference number: 5 (lower is better)
Translates to: CSCSDWHVAARCPGL*TLSWLYSSHWGWHG
Trigger: CCCGTGCCAGCCCCAGTGTGAGCTGTAAAGCCAGCTCAGAGTCCAAAGCCCTGGACATCTTGCAGCAACATGCCAGTCACTACAAGAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp GTATGTAATACTACTTCAGAGCGGGAAGACCGGACTCAGACTAGGGACCAGGAGGGGACAGGTGCACCGTaGCAGCTGAGGTCTGCATGG +
Preference number: 5 (lower is better)
Translates to: VCNTTSEREDRTQTRDQEGTGAP*QLRSAW
Trigger: CCATGCAGACCTCAGCTGCAACGGTGCACCTGTCCC...CTCCTGGTCCCTAGTCTGAGTCCGGTCTTCCCGCTCTGAAGTAGTATTACATAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp AGGGATAAGGCCTGGGAGGGGCCCATGGCAGGGAATCACTGGAAAGTTTCCTTGTTCTTTTTCTTGTCCTaGGCAGGGGTCAGGGCAGGG +
Preference number: 5 (lower is better)
Translates to: RDKAWEGPMAGNHWKVSLFFFLS*AGVRAG
Trigger: CCCTGCCCTGACCCCTGCCAAGGACAAGAAAAAGAA...CAAGGAAACTTTCCAGTGATTCCCTGCCATGGGCCCCTCCCAGGCCTTATCCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp CGTGCTTGGGGTCCCTCCCAGGTGTGTGTTGCTGCTCTGGCAGCAGACCAGGGGGATGAGTCATCTAACTaGGGAATGATGACAGACTTG +
Preference number: 5 (lower is better)
Translates to: RAWGPSQVCVAALAADQGDESSN*GMMTDL
Trigger: CAAGTCTGTCATCATTCCCAAGTTAGATGACTCATC...CCCCTGGTCTGCTGCCAGAGCAGCAACACACACCTGGGAGGGACCCCAAGCACG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp TGGCTTAGTGAGAGGCTTGGTTTGGTGGTCTGCACCAGATCCTGTCTTTCTGACCAGGCACATGGACACTaGGTCGGGGCTCCTTGCTCC +
Preference number: 5 (lower is better)
Translates to: WLSERLGLVVCTRSCLSDQAHGH*VGAPCS
Trigger: GGAGCAAGGAGCCCCGACCAAGTGTCCATGTGCCTG...GTCAGAAAGACAGGATCTGGTGCAGACCACCAAACCAAGCCTCTCACTAAGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS TCA 90 bp GACTGCATGTACATGTTGGGCCGCTGCTGGATGACGGAGGGCTGCTaGCTGGAATTGCTCAGCTCCGGCTTCTTTTCCTCACAGACATCA +
Preference number: 5 (lower is better)
Translates to: DCMYMLGRCWMTEGC*LELLSSGFFSSQTS
Trigger: TGATGTCTGTGAGGAAAAGAAGCCGGAGCTGAGCAATTCCAGTCAGCAGCCCTCCGTCATCCAGCAGCGGCCCAACATGTACATGCAGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS TCA 90 bp GGTTGTAGTACAGGGACTGCATGTACATGTTGGGCCGCTGCTGGATaGCGGAGGGCTGCTGACTGGAATTGCTCAGCTCCGGCTTCTTTT +
Preference number: 5 (lower is better)
Translates to: GCSTGTACTCWAAAG*RRAADWNCSAPASF
Trigger: AAAAGAAGCCGGAGCTGAGCAATTCCAGTCAGCAGCCCTCCGTCATCCAGCAGCGGCCCAACATGTACATGCAGTCCCTGTACTACAACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS GCA 90 bp AATAGCTATACTCCCAAGCGGCTCCACGGTTCCTGTGTCCATCCCTaGACTTCCATCATACTGACTACCCCGTCCTCCCAAGGGAACTGG +
Preference number: 5 (lower is better)
Translates to: NSYTPKRLHGSCVHP*TSIILTTPSSQGNW
Trigger: CCAGTTCCCTTGGGAGGACGGGGTAGTCAGTATGATGGAAGTGCAGGGATGGACACAGGAACCGTGGAGCCGCTTGGGAGTATAGCTATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 90 bp ATATGTCCACATTCGAGACTCCGTCTCCTGTCGGTACCAGAGTATTaGATCCACCTCTGCCTGTCGGCCACACTCAGTGCCCGTCTTAGC +
Preference number: 5 (lower is better)
Translates to: ICPHSRLRLLSVPEY*IHLCLSATLSARLS
Trigger: GCTAAGACGGGCACTGAGTGTGGCCGACAGGCAGAGGTGGATCCAATACTCTGGTACCGACAGGAGACGGAGTCTCGAATGTGGACATAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 90 bp AACCTGGGTAGTTCTGCATCATCACAGCAGGCATCCCCCGGTAGCTaGGGTGGTTGGGGTCATATGACTGGCTGTAAGAGTAGCCATGCA +
Preference number: 5 (lower is better)
Translates to: NLGSSASSQQASPGS*GGWGHMTGCKSSHA
Trigger: TGCATGGCTACTCTTACAGCCAGTCATATGACCCCAACCACCCCAGCTACCGGGGGATGCCTGCTGTGATGATGCAGAACTACCCAGGTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp TGGCTTAGTGAGAGGCTTGGTTTGGTGGTCTGCACCAGATCCTGTCTTTCTGACCGACGGCCTTTGCTATaGGCTCCTGCTCGGGTCTTG +
Preference number: 5 (lower is better)
Translates to: WLSERLGLVVCTRSCLSDRRPLL*APARVL
Trigger: CAAGACCCGAGCAGGAGCCAATAGCAAAGGCCGTCG...GTCAGAAAGACAGGATCTGGTGCAGACCACCAAACCAAGCCTCTCACTAAGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp GGAGTTTCCACAGCTGGAGCTGTAGTGTATGTAATACTACTTCAGAGCGGGAAGGCCTCAGACGCCTCCTaGCCTAGGTGGCTGGCCTCA +
Preference number: 5 (lower is better)
Translates to: GVSTAGAVVYVILLQSGKASDAS*PRWLAS
Trigger: TGAGGCCAGCCACCTAGGCAAGGAGGCGTCTGAGGC...CTTCCCGCTCTGAAGTAGTATTACATACACTACAGCTCCAGCTGTGGAAACTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS GCA 90 bp TCCAATGTCCCATTCATCCCCACTGTCGTATGTCTCAACCGGGTTTaGATCCACTCCTTTCCCTCCGCAGGCTCCACTGCTCAAGGACAT +
Preference number: 5 (lower is better)
Translates to: SNVPFIPTVVCLNRV*IHSFPSAGSTAQGH
Trigger: ATGTCCTTGAGCAGTGGAGCCTGCGGAGGGAAAGGAGTGGATGCAAACCCGGTTGAGACATACGACAGTGGGGATGAATGGGACATTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159109.2
ENSMUST00000160747.2
CDS GCA 90 bp TCACAGGGAGATGAGATGTCATTATTGACCACTGGCACTAACAGGTaGAGTGGCAGCACCGCTGGGGTGGAGACTGGGGACTCCATCTTT +
Preference number: 5 (lower is better)
Translates to: SQGDEMSLLTTGTNR*SGSTAGVETGDSIF
Trigger: AAAGATGGAGTCCCCAGTCTCCACCCCAGCGGTGCTGCCACTGCACCTGTTAGTGCCAGTGGTCAATAATGACATCTCATCTCCCTGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp AGGGATAAGGCCTGGGAGGGGCCCATGGCAGGGAATCACTGGAAAGTTTCCTTGGGCTTGCTAGCGTCTTaGCCACTCTTACTCCTTTTG +
Preference number: 5 (lower is better)
Translates to: RDKAWEGPMAGNHWKVSLGLLAS*PLLLLL
Trigger: CAAAAGGAGTAAGAGTGGCAAAGACGCTAGCAAGCC...CAAGGAAACTTTCCAGTGATTCCCTGCCATGGGCCCCTCCCAGGCCTTATCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp TGGCTTAGTGAGAGGCTTGGTTTGGTGGTCTGCACCAGATCCTGTCTTTCTGACGACTGCATGTACATGTaGGGCCGCTGCTGGATGACG +
Preference number: 5 (lower is better)
Translates to: WLSERLGLVVCTRSCLSDDCMYM*GRCWMT
Trigger: CGTCATCCAGCAGCGGCCCAACATGTACATGCAGTC...GTCAGAAAGACAGGATCTGGTGCAGACCACCAAACCAAGCCTCTCACTAAGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS GCA 90 bp GATTCCATCTCCTGCTGCGTCTCTGAACGGGCTCTTACCTTCTTCTaGTCGGCATACCTTCCCAGGGGTCAGAGGACTTTCAAGTTCCTT +
Preference number: 5 (lower is better)
Translates to: DSISCCVSERALTFF*SAYLPRGQRTFKFL
Trigger: AAGGAACTTGAAAGTCCTCTGACCCCTGGGAAGGTATGCCGAGCAGAAGAAGGTAAGAGCCCGTTCAGAGACGCAGCAGGAGATGGAATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 90 bp TCTGCCGCTTCTGCTGTTCTTCATACTGCTGCCGATAAGCGGTGTTaGTACTCAGGAGGTGGCTGTGGTAACTCTGGTCACTGTAGCCAT +
Preference number: 5 (lower is better)
Translates to: SAASAVLHTAADKRC*YSGGGCGNSGHCSH
Trigger: ATGGCTACAGTGACCAGAGTTACCACAGCCACCTCCTGAGTACCAACACCGCTTATCGGCAGCAGTATGAAGAACAGCAGAAGCGGCAGA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp TGGCTTAGTGAGAGGCTTGGTTTGGTGGTCTGCACCAGATCCTGTCTTTCTGACGGTATCCCCACCTCCTaGGAGCCTGACATTTCCAGT +
Preference number: 5 (lower is better)
Translates to: WLSERLGLVVCTRSCLSDGIPTS*EPDISS
Trigger: ACTGGAAATGTCAGGCTCCAAGGAGGTGGGGATACC...GTCAGAAAGACAGGATCTGGTGCAGACCACCAAACCAAGCCTCTCACTAAGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp AATTTCTCCACGTGCTGCCAGTTCCCAGGGCCCAAACCACTGAGGAGATGTGGAGTGCCCAATCATGCCTaGTGCAGTCAAGAAGTGTAC +
Preference number: 5 (lower is better)
Translates to: NFSTCCQFPGPKPLRRCGVPNHA*CSQEVY
Trigger: GTACACTTCTTGACTGCACAAGGCATGATTGGGCAC...TCCACATCTCCTCAGTGGTTTGGGCCCTGGGAACTGGCAGCACGTGGAGAAATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp AATTTCTCCACGTGCTGCCAGTTCCCAGGGCCCAAACCACTGAGGAGATGTGGAAAGATGTCCAGGGCTTaGGACTCTGAGCTGGCTTTA +
Preference number: 5 (lower is better)
Translates to: NFSTCCQFPGPKPLRRCGKMSRA*DSELAL
Trigger: TAAAGCCAGCTCAGAGTCCAAAGCCCTGGACATCTT...TCCACATCTCCTCAGTGGTTTGGGCCCTGGGAACTGGCAGCACGTGGAGAAATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 90 bp TGCTTGTTTCATCCATTACCGAGGGCCCGTCATCAGAGCCATCATTaGATAAGGCTCCAGGGTCTGTGTCTCCCTCCCCACTCAGTTTTT +
Preference number: 5 (lower is better)
Translates to: CLFHPLPRARHQSHH*IRLQGLCLPPHSVF
Trigger: AAAAACTGAGTGGGGAGGGAGACACAGACCCTGGAGCCTTATCCAATGATGGCTCTGATGACGGGCCCTCGGTAATGGATGAAACAAGCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp GTATGTAATACTACTTCAGAGCGGGAAGACCGGACTCAGACTAGGGACCAGGAGATGTCTCAACCGGGTTaGCATCCACTCCTTTCCCTC +
Preference number: 5 (lower is better)
Translates to: VCNTTSEREDRTQTRDQEMSQPG*HPLLSL
Trigger: GAGGGAAAGGAGTGGATGCAAACCCGGTTGAGACAT...CTCCTGGTCCCTAGTCTGAGTCCGGTCTTCCCGCTCTGAAGTAGTATTACATAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp GTTAGAGCCACCTACCTTCCTGCTCTCAAACTGTCACTTTTGACATTCTTGTTTGCTCCTGCTCGGGTCTaGCTGCTGCTGCTGGTCCCT +
Preference number: 5 (lower is better)
Translates to: VRATYLPALKLSLLTFLFAPARV*LLLLVP
Trigger: AGGGACCAGCAGCAGCAGCAAGACCCGAGCAGGAGC...AAACAAGAATGTCAAAAGTGACAGTTTGAGAGCAGGAAGGTAGGTGGCTCTAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp CTCTTGGGCTTTGTGCTTAATGTCTCCCACCACCCCACTTTCCCAAAGAAGTTATCAACAAGCCGAACTTaGGGGGTAGCTGAGCGGGCA +
Preference number: 5 (lower is better)
Translates to: LLGFVLNVSHHPTFPKKLSTSRT*GVAERA
Trigger: TGCCCGCTCAGCTACCCCCAAAGTTCGGCTTGTTGA...TAACTTCTTTGGGAAAGTGGGGTGGTGGGAGACATTAAGCACAAAGCCCAAGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp TCTGAGCATTTATCTGTGCTCACATCAGAGGGGGATGTCTCCACACTTGAAGACTGCTTCCACTCTTCCTaGAGCGATGCCTCCCGCTCT +
Preference number: 5 (lower is better)
Translates to: SEHLSVLTSEGDVSTLEDCFHSS*SDASRS
Trigger: AGAGCGGGAGGCATCGCTCAAGGAAGAGTGGAAGCA...GTCTTCAAGTGTGGAGACATCCCCCTCTGATGTGAGCACAGATAAATGCTCAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp GGAGTTTCCACAGCTGGAGCTGTAGTGTATGTAATACTACTTCAGAGCGGGAAGTCGCCACCTGAGACCTaGCTGCCATACGGGGAGAAA +
Preference number: 5 (lower is better)
Translates to: GVSTAGAVVYVILLQSGKSPPET*LPYGEK
Trigger: TTTCTCCCCGTATGGCAGCAAGGTCTCAGGTGGCGA...CTTCCCGCTCTGAAGTAGTATTACATACACTACAGCTCCAGCTGTGGAAACTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 90 bp GGGGTAGCTTGCAGTCACTACTTGTGCTTTCCTTCCCGTCTTCCTTaGGAACAGAGTCCTTACTCCGGCTCCTGTCCTCCTTTAATTTTC +
Preference number: 5 (lower is better)
Translates to: GVACSHYLCFPSRLP*EQSPYSGSCPPLIF
Trigger: GAAAATTAAAGGAGGACAGGAGCCGGAGTAAGGACTCTGTTCCCAAGGAAGACGGGAAGGAAAGCACAAGTAGTGACTGCAAGCTACCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp CTCTTGGGCTTTGTGCTTAATGTCTCCCACCACCCCACTTTCCCAAAGAAGTTATGGCTGCTCCCTCACTaGGAGAGAACAAGGAAGTCC +
Preference number: 5 (lower is better)
Translates to: LLGFVLNVSHHPTFPKKLWLLPH*ERTRKS
Trigger: GGACTTCCTTGTTCTCTCCAAGTGAGGGAGCAGCCA...TAACTTCTTTGGGAAAGTGGGGTGGTGGGAGACATTAAGCACAAAGCCCAAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp GGAGTTTCCACAGCTGGAGCTGTAGTGTATGTAATACTACTTCAGAGCGGGAAGCTGAGCCCATGGAATTaGTACGGACACGCTTGCTCC +
Preference number: 5 (lower is better)
Translates to: GVSTAGAVVYVILLQSGKLSPWN*YGHACS
Trigger: GGAGCAAGCGTGTCCGTACAAATTCCATGGGCTCAG...CTTCCCGCTCTGAAGTAGTATTACATACACTACAGCTCCAGCTGTGGAAACTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp TGGCTTAGTGAGAGGCTTGGTTTGGTGGTCTGCACCAGATCCTGTCTTTCTGACTCATCAGAGCCATCATaGGATAAGGCTCCAGGGTCT +
Preference number: 5 (lower is better)
Translates to: WLSERLGLVVCTRSCLSDSSEPS*DKAPGS
Trigger: AGACCCTGGAGCCTTATCCAATGATGGCTCTGATGA...GTCAGAAAGACAGGATCTGGTGCAGACCACCAAACCAAGCCTCTCACTAAGCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp TCTGAGCATTTATCTGTGCTCACATCAGAGGGGGATGTCTCCACACTTGAAGACTTGAGTTGGGGACTGTaGGGCATTGCTTGGACCACG +
Preference number: 5 (lower is better)
Translates to: SEHLSVLTSEGDVSTLEDLSWGL*GIAWTT
Trigger: CGTGGTCCAAGCAATGCCCAACAGTCCCCAACTCAA...GTCTTCAAGTGTGGAGACATCCCCCTCTGATGTGAGCACAGATAAATGCTCAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS GCA 90 bp ACGTCGCATGTGTTGACACCAACTGATCGGGTACGGACCATGATCTaGTCACAGGGAGATGAGATGTCATTATTGACCACTGGCACTAAC +
Preference number: 5 (lower is better)
Translates to: TSHVLTPTDRVRTMI*SQGDEMSLLTTGTN
Trigger: GTTAGTGCCAGTGGTCAATAATGACATCTCATCTCCCTGTGAGCAGATCATGGTCCGTACCCGATCAGTTGGTGTCAACACATGCGACGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS GCA 90 bp TGGTGGGGGAGTCACAGAACCTTGGGGGTGCCCAATCATGCCTTGTaGAGTCAAGAAGTGTACCTACATATGTCTTGTTTCTCCATGTCA +
Preference number: 5 (lower is better)
Translates to: WWGSHRTLGVPNHAL*SQEVYLHMSCFSMS
Trigger: TGACATGGAGAAACAAGACATATGTAGGTACACTTCTTGACTGCACAAGGCATGATTGGGCACCCCCAAGGTTCTGTGACTCCCCCACCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp GGTGGCTTAGTGAGAGGCTTGGTTTGGTGGTCTGCACCAGATCCTGTCTTTCTGTCCATCTTTTCAGACTaGACTTTCTTTAGTGGCCGG +
Preference number: 5 (lower is better)
Translates to: GGLVRGLVWWSAPDPVFLSIFSD*TFFSGR
Trigger: CCGGCCACTAAAGAAAGTCAAGTCTGAAAAGATGGA...CAGAAAGACAGGATCTGGTGCAGACCACCAAACCAAGCCTCTCACTAAGCCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp AGAACACAGGGTCATTTTTCTACTGCTAATCTCGTTTCAGAGCAGCACCTGTTTGGGAGTCACAGAACCTaGGGGGTGCCCAATCATGCC +
Preference number: 5 (lower is better)
Translates to: RTQGHFSTANLVSEQHLFGSHRT*GVPNHA
Trigger: GGCATGATTGGGCACCCCCAAGGTTCTGTGACTCCC...AAACAGGTGCTGCTCTGAAACGAGATTAGCAGTAGAAAAATGACCCTGTGTTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp GTAGGCTTAGTGGAGACTACATGTACAAGTATAAGATGGGGAAATGAGGAAGTACTGCTGCTGGTCCCTTaGCTGTCAGAGGCTGCGGCT +
Preference number: 5 (lower is better)
Translates to: VGLVETTCTSIRWGNEEVLLLVP*LSEAAA
Trigger: AGCCGCAGCCTCTGACAGCAAAGGGACCAGCAGCAG...TACTTCCTCATTTCCCCATCTTATACTTGTACATGTAGTCTCCACTAAGCCTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp TCTGAGCATTTATCTGTGCTCACATCAGAGGGGGATGTCTCCACACTTGAAGACAGAAGGCTCTCCACTTaGATTCCATCTCCTGCTGCG +
Preference number: 5 (lower is better)
Translates to: SEHLSVLTSEGDVSTLEDRRLST*IPSPAA
Trigger: CGCAGCAGGAGATGGAATCAAAGTGGAGAGCCTTCT...GTCTTCAAGTGTGGAGACATCCCCCTCTGATGTGAGCACAGATAAATGCTCAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp GGTGGCTTAGTGAGAGGCTTGGTTTGGTGGTCTGCACCAGATCCTGTCTTTCTGCGATCATCCTCTGACTaGATGTCTGAGTATTTGGCA +
Preference number: 5 (lower is better)
Translates to: GGLVRGLVWWSAPDPVFLRSSSD*MSEYLA
Trigger: TGCCAAATACTCAGACATCAAGTCAGAGGATGATCG...CAGAAAGACAGGATCTGGTGCAGACCACCAAACCAAGCCTCTCACTAAGCCACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp AGTAAGGGTAATGGGTTAGATAAGATGTTATCTCCAACATCTACCTCCACGAATCTACCCCGACGGCCTTaGCTATTGGCTCCTGCTCGG +
Preference number: 5 (lower is better)
Translates to: SKGNGLDKMLSPTSTSTNLPRRP*LLAPAR
Trigger: CCGAGCAGGAGCCAATAGCAAAGGCCGTCGGGGTAG...ATTCGTGGAGGTAGATGTTGGAGATAACATCTTATCTAACCCATTACCCTTACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp CCAGCTAGCTGCCCAGCTGAATCTTGGGGGCCATCAGAGTACACAGATAAGGTAATGTCTGAAAGAGGTTaGCTTTTCCGCTTATTGGCT +
Preference number: 5 (lower is better)
Translates to: PASCPAESWGPSEYTDKVMSERG*LFRLLA
Trigger: AGCCAATAAGCGGAAAAGCAAACCTCTTTCAGACAT...TACCTTATCTGTGTACTCTGATGGCCCCCAAGATTCAGCTGGGCAGCTAGCTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp AGTAAGGGTAATGGGTTAGATAAGATGTTATCTCCAACATCTACCTCCACGAATTCGGGGTCCTTCGACTaGGCACTGTCCACCTTGCCC +
Preference number: 5 (lower is better)
Translates to: SKGNGLDKMLSPTSTSTNSGSFD*ALSTLP
Trigger: GGGCAAGGTGGACAGTGCCAAGTCGAAGGACCCCGA...ATTCGTGGAGGTAGATGTTGGAGATAACATCTTATCTAACCCATTACCCTTACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp AGGGATAAGGCCTGGGAGGGGCCCATGGCAGGGAATCACTGGAAAGTTTCCTTGGTAACTTTCAAAGCCTaGATAATATGGGGAGTCTTT +
Preference number: 5 (lower is better)
Translates to: RDKAWEGPMAGNHWKVSLVTFKA*IIWGVF
Trigger: AAAGACTCCCCATATTATCAAGGCTTTGAAAGTTAC...CAAGGAAACTTTCCAGTGATTCCCTGCCATGGGCCCCTCCCAGGCCTTATCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp TCTCTCAGTTGCTCCTATGCCTTCATCTCCATAGATGACCACAACAAAACTGTGGTCAGGCTGGGAGCCTaGGTGAGAGTTGGTGGAATT +
Preference number: 5 (lower is better)
Translates to: SLSCSYAFISIDDHNKTVVRLGA*VRVGGI
Trigger: AATTCCACCAACTCTCACCAAGGCTCCCAGCCTGAC...CACAGTTTTGTTGTGGTCATCTATGGAGATGAAGGCATAGGAGCAACTGAGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp CTCTTGGGCTTTGTGCTTAATGTCTCCCACCACCCCACTTTCCCAAAGAAGTTAGCTGGCTGGGGAGTTTaGATGAGTCATCTAACTTGG +
Preference number: 5 (lower is better)
Translates to: LLGFVLNVSHHPTFPKKLAGWGV*MSHLTW
Trigger: CCAAGTTAGATGACTCATCAAAACTCCCCAGCCAGC...TAACTTCTTTGGGAAAGTGGGGTGGTGGGAGACATTAAGCACAAAGCCCAAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp GGAGTTTCCACAGCTGGAGCTGTAGTGTATGTAATACTACTTCAGAGCGGGAAGGCTTGCAGTCACTACTaGTGCTTTCCTTCCCGTCTT +
Preference number: 5 (lower is better)
Translates to: GVSTAGAVVYVILLQSGKACSHY*CFPSRL
Trigger: AAGACGGGAAGGAAAGCACAAGTAGTGACTGCAAGC...CTTCCCGCTCTGAAGTAGTATTACATACACTACAGCTCCAGCTGTGGAAACTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp TGTGTTATAAAGACACTCCTCATATTGGCACGTACGGAGTTACAGAGTGAACTGGCCACGTCGCATGTGTaGACACCAACTGATCGGGTA +
Preference number: 5 (lower is better)
Translates to: CVIKTLLILARTELQSELATSHV*TPTDRV
Trigger: TACCCGATCAGTTGGTGTCAACACATGCGACGTGGC...CAGTTCACTCTGTAACTCCGTACGTGCCAATATGAGGAGTGTCTTTATAACACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp AGAACACAGGGTCATTTTTCTACTGCTAATCTCGTTTCAGAGCAGCACCTGTTTACGATGCCTTCAAGGTaGACGCTGGTTCCAGGCTCA +
Preference number: 5 (lower is better)
Translates to: RTQGHFSTANLVSEQHLFTMPSR*TLVPGS
Trigger: TGAGCCTGGAACCAGCGTCAACCTTGAAGGCATCGT...AAACAGGTGCTGCTCTGAAACGAGATTAGCAGTAGAAAAATGACCCTGTGTTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp AATTTCTCCACGTGCTGCCAGTTCCCAGGGCCCAAACCACTGAGGAGATGTGGAGTACCTACATATGTCTaGTTTCTCCATGTCACATTT +
Preference number: 5 (lower is better)
Translates to: NFSTCCQFPGPKPLRRCGVPTYV*FLHVTF
Trigger: AAATGTGACATGGAGAAACAAGACATATGTAGGTAC...TCCACATCTCCTCAGTGGTTTGGGCCCTGGGAACTGGCAGCACGTGGAGAAATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp GTTAGAGCCACCTACCTTCCTGCTCTCAAACTGTCACTTTTGACATTCTTGTTTCTGAATGGGCTTGAGTaGGGGACTGTTGGGCATTGC +
Preference number: 5 (lower is better)
Translates to: VRATYLPALKLSLLTFLFLNGLE*GTVGHC
Trigger: GCAATGCCCAACAGTCCCCAACTCAAGCCCATTCAG...AAACAAGAATGTCAAAAGTGACAGTTTGAGAGCAGGAAGGTAGGTGGCTCTAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp AGAACACAGGGTCATTTTTCTACTGCTAATCTCGTTTCAGAGCAGCACCTGTTTTTTGTACGGACACGCTaGCTCCCTTTGGAGTCCTCT +
Preference number: 5 (lower is better)
Translates to: RTQGHFSTANLVSEQHLFFVRTR*LPLESS
Trigger: AGAGGACTCCAAAGGGAGCAAGCGTGTCCGTACAAA...AAACAGGTGCTGCTCTGAAACGAGATTAGCAGTAGAAAAATGACCCTGTGTTCT
47% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp GTAGGCTTAGTGGAGACTACATGTACAAGTATAAGATGGGGAAATGAGGAAGTACGTGTGGGCGTGAGCTaGGTGGTACTTAAGCCCATT +
Preference number: 5 (lower is better)
Translates to: VGLVETTCTSIRWGNEEVRVGVS*VVLKPI
Trigger: AATGGGCTTAAGTACCACCAAGCTCACGCCCACACG...TACTTCCTCATTTCCCCATCTTATACTTGTACATGTAGTCTCCACTAAGCCTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp GTAGGCTTAGTGGAGACTACATGTACAAGTATAAGATGGGGAAATGAGGAAGTAACTGTTGGGCATTGCTaGGACCACGGTGGTGGTCAA +
Preference number: 5 (lower is better)
Translates to: VGLVETTCTSIRWGNEEVTVGHC*DHGGGQ
Trigger: TTGACCACCACCGTGGTCCAAGCAATGCCCAACAGT...TACTTCCTCATTTCCCCATCTTATACTTGTACATGTAGTCTCCACTAAGCCTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp TGTGTTATAAAGACACTCCTCATATTGGCACGTACGGAGTTACAGAGTGAACTGGCTCCTCATCCTTTTTaGTCTTTAGGGGCTGGCCCT +
Preference number: 5 (lower is better)
Translates to: CVIKTLLILARTELQSELAPHPF*SLGAGP
Trigger: AGGGCCAGCCCCTAAAGACAAAAAAGGATGAGGAGC...CAGTTCACTCTGTAACTCCGTACGTGCCAATATGAGGAGTGTCTTTATAACACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp GTAGGCTTAGTGGAGACTACATGTACAAGTATAAGATGGGGAAATGAGGAAGTAGGAATGATGACAGACTaGGCAGGATCTGTCCCAGGC +
Preference number: 5 (lower is better)
Translates to: VGLVETTCTSIRWGNEEVGMMTD*AGSVPG
Trigger: GCCTGGGACAGATCCTGCCAAGTCTGTCATCATTCC...TACTTCCTCATTTCCCCATCTTATACTTGTACATGTAGTCTCCACTAAGCCTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp TCTCTCAGTTGCTCCTATGCCTTCATCTCCATAGATGACCACAACAAAACTGTGGTGACAAACTTGATGTaGTCTGGTAGTGTGGCCACA +
Preference number: 5 (lower is better)
Translates to: SLSCSYAFISIDDHNKTVVTNLM*SGSVAT
Trigger: TGTGGCCACACTACCAGACAACATCAAGTTTGTCAC...CACAGTTTTGTTGTGGTCATCTATGGAGATGAAGGCATAGGAGCAACTGAGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp TCTGAGCATTTATCTGTGCTCACATCAGAGGGGGATGTCTCCACACTTGAAGACCCACTCTTACTCCTTTaGGATTTTGATTTGCCTTCC +
Preference number: 5 (lower is better)
Translates to: SEHLSVLTSEGDVSTLEDPLLLL*DFDLPS
Trigger: GGAAGGCAAATCAAAATCCAAAAGGAGTAAGAGTGG...GTCTTCAAGTGTGGAGACATCCCCCTCTGATGTGAGCACAGATAAATGCTCAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp GTTAGAGCCACCTACCTTCCTGCTCTCAAACTGTCACTTTTGACATTCTTGTTTTCAGATGGGGGTAGCTaGCAGTCACTACTTGTGCTT +
Preference number: 5 (lower is better)
Translates to: VRATYLPALKLSLLTFLFSDGGS*QSLLVL
Trigger: AAGCACAAGTAGTGACTGCAAGCTACCCCCATCTGA...AAACAAGAATGTCAAAAGTGACAGTTTGAGAGCAGGAAGGTAGGTGGCTCTAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS GCA 90 bp TTTCCTTTTCCATACACTTCCTTTCCAAAGAGTCAAAGGCATCATTaGTTGTTTCATCCATTACCGAGGGCCCGTCATCAGAGCCATCAT +
Preference number: 5 (lower is better)
Translates to: FPFPYTSFPKSQRHH*LFHPLPRARHQSHH
Trigger: ATGATGGCTCTGATGACGGGCCCTCGGTAATGGATGAAACAAGCAATGATGCCTTTGACTCTTTGGAAAGGAAGTGTATGGAAAAGGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp AGAACACAGGGTCATTTTTCTACTGCTAATCTCGTTTCAGAGCAGCACCTGTTTTCACTTCTCTCCTTCTaGCCCTTAGATGAGCTGTTC +
Preference number: 5 (lower is better)
Translates to: RTQGHFSTANLVSEQHLFSLLSF*PLDELF
Trigger: GAACAGCTCATCTAAGGGCAAGAAGGAGAGAAGTGA...AAACAGGTGCTGCTCTGAAACGAGATTAGCAGTAGAAAAATGACCCTGTGTTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp AGTAAGGGTAATGGGTTAGATAAGATGTTATCTCCAACATCTACCTCCACGAATTTGCTTTTCCGCTTATaGGCTGAGGAAGGGCTGGCT +
Preference number: 5 (lower is better)
Translates to: SKGNGLDKMLSPTSTSTNLLFRL*AEEGLA
Trigger: AGCCAGCCCTTCCTCAGCCAATAAGCGGAAAAGCAA...ATTCGTGGAGGTAGATGTTGGAGATAACATCTTATCTAACCCATTACCCTTACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS TCA 90 bp TTAATTTTCGGTCCCGTTCCTCTTTCCACCGATCATCCTCTGACTTaGTGTCTGAGTATTTGGCAGGATAAACATATGTCCACATTCGAG +
Preference number: 5 (lower is better)
Translates to: LIFGPVPLSTDHPLT*CLSIWQDKHMSTFE
Trigger: CTCGAATGTGGACATATGTTTATCCTGCCAAATACTCAGACATCAAGTCAGAGGATGATCGGTGGAAAGAGGAACGGGACCGAAAATTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp AGAACACAGGGTCATTTTTCTACTGCTAATCTCGTTTCAGAGCAGCACCTGTTTGATGAGATGTCATTATaGACCACTGGCACTAACAGG +
Preference number: 5 (lower is better)
Translates to: RTQGHFSTANLVSEQHLFDEMSL*TTGTNR
Trigger: CCTGTTAGTGCCAGTGGTCAATAATGACATCTCATC...AAACAGGTGCTGCTCTGAAACGAGATTAGCAGTAGAAAAATGACCCTGTGTTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp GTAGGCTTAGTGGAGACTACATGTACAAGTATAAGATGGGGAAATGAGGAAGTATTGTCTTTCTTTTTCTaGTCCTTGGCAGGGGTCAGG +
Preference number: 5 (lower is better)
Translates to: VGLVETTCTSIRWGNEEVLSFFF*SLAGVR
Trigger: CCTGACCCCTGCCAAGGACAAGAAAAAGAAAGACAA...TACTTCCTCATTTCCCCATCTTATACTTGTACATGTAGTCTCCACTAAGCCTAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS-3UTR CAA 90 bp GTTAGAGCCACCTACCTTCCTGCTCTCAAACTGTCACTTTTGACATTCTTGTTTGAGTCAAAGGCATCATaGCTTGTTTCATCCATTACC +
Preference number: 5 (lower is better)
Translates to: VRATYLPALKLSLLTFLFESKAS*LVSSIT
Trigger: GGTAATGGATGAAACAAGCAATGATGCCTTTGACTC...AAACAAGAATGTCAAAAGTGACAGTTTGAGAGCAGGAAGGTAGGTGGCTCTAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 72 bp GACTGGTGCTGGGTGAGCGGGGAGGACACAGGCACATaGACACTTGGTCGGGGCTCCTTGCTCCCGAGGCGG +
Preference number: 6 (lower is better)
Translates to: DWCWVSGEDTGT*TLGRGSLLPRR
Trigger: CCGCCTCGGGAGCAAGGAGCCCCGACCAAGTGTCCATGTGCCTGTGTCCTCCCCGCTCACCCAGCACCAGTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 72 bp CTGGGTGAGCGGGGAGGACACAGGCACATGGACACTTaGTCGGGGCTCCTTGCTCCCGAGGCGGGATTCCTC +
Preference number: 6 (lower is better)
Translates to: LGERGGHRHMDT*SGLLAPEAGFL
Trigger: GAGGAATCCCGCCTCGGGAGCAAGGAGCCCCGACCAAGTGTCCATGTGCCTGTGTCCTCCCCGCTCACCCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 72 bp AAGTGGTGGTGGTGGTGGTGTGTGGACATCAGGCGCTaGGAAGGGGATGTGCGGGGCCGGTCGGCACTCCTG +
Preference number: 6 (lower is better)
Translates to: KWWWWWCVDIRR*EGDVRGRSALL
Trigger: CAGGAGTGCCGACCGGCCCCGCACATCCCCTTCCCAGCGCCTGATGTCCACACACCACCACCACCACCACTT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS GCA 72 bp AGCAGCAACCAGGCCTCCCGCACTGGCACCATCTCCTaGGCGACCCTGCACCTCTTTCTTGCTGGCTGCTCC +
Preference number: 6 (lower is better)
Translates to: SSNQASRTGTIS*ATLHLFLAGCS
Trigger: GGAGCAGCCAGCAAGAAAGAGGTGCAGGGTCGCGCAGGAGATGGTGCCAGTGCGGGAGGCCTGGTTGCTGCT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS GCA 72 bp GCGGGCAGGGGACAAGGATCCTTTCTGTGGGACAGGTaGACCGTTGCAGCTGAGGTCTGCATGGAGGGCGGG +
Preference number: 6 (lower is better)
Translates to: AGRGQGSFLWDR*TVAAEVCMEGG
Trigger: CCCGCCCTCCATGCAGACCTCAGCTGCAACGGTGCACCTGTCCCACAGAAAGGATCCTTGTCCCCTGCCCGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 90 bp GCAGGAGGGCGGTGCTCTGAGGAGTTCTGGCTACCCCGACGGCCTTaGCTATTGGCTCCTGCTCGGGTCTTGCTGCTGCTGCTGGTCCCT +
Preference number: 6 (lower is better)
Translates to: AGGRCSEEFWLPRRP*LLAPARVLLLLLVP
Trigger: AGGGACCAGCAGCAGCAGCAAGACCCGAGCAGGAGCCAATAGCAAAGGCCGTCGGGGTAGCCAGAACTCCTCAGAGCACCGCCCTCCTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS TCA 72 bp GGGTTCTACCTTGGTCCCAGGGAGGGGCCCGGTGGCTaGGCCCATGGAATTTGTACGGACACGCTTGCTCCC +
Preference number: 6 (lower is better)
Translates to: GFYLGPREGPGG*AHGICTDTLAP
Trigger: GGGAGCAAGCGTGTCCGTACAAATTCCATGGGCTCAGCCACCGGGCCCCTCCCTGGGACCAAGGTAGAACCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS TCA 72 bp AGGATCTGTCCCAGGCTCCTTGGCCTTGCCGGGCCCTaGCTTCACCAGGTCTGTCAGGCTGGGAGCCTTGGT +
Preference number: 6 (lower is better)
Translates to: RICPRLLGLAGP*LHQVCQAGSLG
Trigger: ACCAAGGCTCCCAGCCTGACAGACCTGGTGAAGTCAGGGCCCGGCAAGGCCAAGGAGCCTGGGACAGATCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS GCA 72 bp CAGACTTGGCAGGATCTGTCCCAGGCTCCTTGGCCTTaGCGGGCCCTGACTTCACCAGGTCTGTCAGGCTGG +
Preference number: 6 (lower is better)
Translates to: QTWQDLSQAPWP*RALTSPGLSGW
Trigger: CCAGCCTGACAGACCTGGTGAAGTCAGGGCCCGGCAAGGCCAAGGAGCCTGGGACAGATCCTGCCAAGTCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 72 bp CCTTGGGAGCAACAGCAGCAACCAGGCCTCCCGCACTaGCACCATCTCCTGCGCGACCCTGCACCTCTTTCT +
Preference number: 6 (lower is better)
Translates to: PWEQQQQPGLPH*HHLLRDPAPLS
Trigger: AGAAAGAGGTGCAGGGTCGCGCAGGAGATGGTGCCAGTGCGGGAGGCCTGGTTGCTGCTGTTGCTCCCAAGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 72 bp GGGCTTTGGACTCTGAGCTGGCTTTACAGCTCACACTaGGGCTGGCACGGGCCTTGTCAGCGTCCTCGCCAC +
Preference number: 6 (lower is better)
Translates to: GLWTLSWLYSSH*GWHGPCQRPRH
Trigger: GTGGCGAGGACGCTGACAAGGCCCGTGCCAGCCCCAGTGTGAGCTGTAAAGCCAGCTCAGAGTCCAAAGCCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 72 bp GCAAGGAATAGCCCAAGTGGTGGTGGTGGTGGTGTGTaGACATCAGGCGCTGGGAAGGGGATGTGCGGGGCC +
Preference number: 6 (lower is better)
Translates to: ARNSPSGGGGGV*TSGAGKGMCGA
Trigger: GGCCCCGCACATCCCCTTCCCAGCGCCTGATGTCCACACACCACCACCACCACCACTTGGGCTATTCCTTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 72 bp GAGGACACAGGCACATGGACACTTGGTCGGGGCTCCTaGCTCCCGAGGCGGGATTCCTCAGATGGGGGTAGC +
Preference number: 6 (lower is better)
Translates to: EDTGTWTLGRGS*LPRRDSSDGGS
Trigger: GCTACCCCCATCTGAGGAATCCCGCCTCGGGAGCAAGGAGCCCCGACCAAGTGTCCATGTGCCTGTGTCCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 90 bp TTCTGGCTACCCCGACGGCCTTTGCTATTGGCTCCTGCTCGGGTCTaGCTGCTGCTGCTGGTCCCTTTGCTGTCAGAGGCTGCGGCTGCC +
Preference number: 6 (lower is better)
Translates to: FWLPRRPLLLAPARV*LLLLVPLLSEAAAA
Trigger: GGCAGCCGCAGCCTCTGACAGCAAAGGGACCAGCAGCAGCAGCAAGACCCGAGCAGGAGCCAATAGCAAAGGCCGTCGGGGTAGCCAGAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 90 bp GGGCGGTGCTCTGAGGAGTTCTGGCTACCCCGACGGCCTTTGCTATaGGCTCCTGCTCGGGTCTTGCTGCTGCTGCTGGTCCCTTTGCTG +
Preference number: 6 (lower is better)
Translates to: GRCSEEFWLPRRPLL*APARVLLLLLVPLL
Trigger: CAGCAAAGGGACCAGCAGCAGCAGCAAGACCCGAGCAGGAGCCAATAGCAAAGGCCGTCGGGGTAGCCAGAACTCCTCAGAGCACCGCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 90 bp GACTCTGAGCTGGCTTTACAGCTCACACTGGGGCTGGCACGGGCCTaGTCAGCGTCCTCGCCACCTGAGACCTTGCTGCCATACGGGGAG +
Preference number: 6 (lower is better)
Translates to: DSELALQLTLGLARA*SASSPPETLLPYGE
Trigger: CTCCCCGTATGGCAGCAAGGTCTCAGGTGGCGAGGACGCTGACAAGGCCCGTGCCAGCCCCAGTGTGAGCTGTAAAGCCAGCTCAGAGTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 90 bp GAGCCAGCTACACTGCGTGACGCCTTAGCAGCCTTCTCTGAGCCCTaGGGAGCAACAGCAGCAACCAGGCCTCCCGCACTGGCACCATCT +
Preference number: 6 (lower is better)
Translates to: EPATLRDALAAFSEP*GATAATRPPALAPS
Trigger: AGATGGTGCCAGTGCGGGAGGCCTGGTTGCTGCTGTTGCTCCCAAGGGCTCAGAGAAGGCTGCTAAGGCGTCACGCAGTGTAGCTGGCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 90 bp GCGGCTGCCTCACTGACAGGTGTGTTACTGCTGGGACGCATGCGCTaGCCTCTTCCTCGGCCGTTCCGCATTTCCAAGTCACTGGTGGGG +
Preference number: 6 (lower is better)
Translates to: AAASLTGVLLLGRMR*PLPRPFRISKSLVG
Trigger: CCCCACCAGTGACTTGGAAATGCGGAACGGCCGAGGAAGAGGCAAGCGCATGCGTCCCAGCAGTAACACACCTGTCAGTGAGGCAGCCGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 90 bp TCCTTGAGCGATGCCTCCCGCTCTTTCAGGCCCATCTCTGTCTTCTaGTCCAGTCCCCGCTGCTGCTGCTGCTGCTGCTCCAGGCTCTGC +
Preference number: 6 (lower is better)
Translates to: SLSDASRSFRPISVF*SSPRCCCCCCSRLC
Trigger: GCAGAGCCTGGAGCAGCAGCAGCAGCAGCAGCGGGGACTGGACAAGAAGACAGAGATGGGCCTGAAAGAGCGGGAGGCATCGCTCAAGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 90 bp GCCTGTCGGCCACACTCAGTGCCCGTCTTAGCCTCAGACGCCTCCTaGCCTAGGTGGCTGGCCTCACCCAGCTTCCCTTTAAGGCCTTCA +
Preference number: 6 (lower is better)
Translates to: ACRPHSVPVLASDAS*PRWLASPSFPLRPS
Trigger: TGAAGGCCTTAAAGGGAAGCTGGGTGAGGCCAGCCACCTAGGCAAGGAGGCGTCTGAGGCTAAGACGGGCACTGAGTGTGGCCGACAGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS TCA 72 bp GGGGCTGGCACGGGCCTTGTCAGCGTCCTCGCCACCTaGGACCTTGCTGCCATACGGGGAGAAAGAATAGCT +
Preference number: 6 (lower is better)
Translates to: GAGTGLVSVLAT*DLAAIRGERIA
Trigger: AGCTATTCTTTCTCCCCGTATGGCAGCAAGGTCTCAGGTGGCGAGGACGCTGACAAGGCCCGTGCCAGCCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS GCA 72 bp GGCCTTTGCTATTGGCTCCTGCTCGGGTCTTGCTGCTaGTGCTGGTCCCTTTGCTGTCAGAGGCTGCGGCTG +
Preference number: 6 (lower is better)
Translates to: GLCYWLLLGSCC*CWSLCCQRLRL
Trigger: CAGCCGCAGCCTCTGACAGCAAAGGGACCAGCAGCAGCAGCAAGACCCGAGCAGGAGCCAATAGCAAAGGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS GCA 72 bp GACGGCCTTTGCTATTGGCTCCTGCTCGGGTCTTGCTaGTGCTGCTGGTCCCTTTGCTGTCAGAGGCTGCGG +
Preference number: 6 (lower is better)
Translates to: DGLCYWLLLGSC*CCWSLCCQRLR
Trigger: CCGCAGCCTCTGACAGCAAAGGGACCAGCAGCAGCAGCAAGACCCGAGCAGGAGCCAATAGCAAAGGCCGTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS GCA 72 bp CCCGACGGCCTTTGCTATTGGCTCCTGCTCGGGTCTTaGTGCTGCTGCTGGTCCCTTTGCTGTCAGAGGCTG +
Preference number: 6 (lower is better)
Translates to: PDGLCYWLLLGS*CCCWSLCCQRL
Trigger: CAGCCTCTGACAGCAAAGGGACCAGCAGCAGCAGCAAGACCCGAGCAGGAGCCAATAGCAAAGGCCGTCGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS GCA 72 bp GGTGCTCTGAGGAGTTCTGGCTACCCCGACGGCCTTTaGTATTGGCTCCTGCTCGGGTCTTGCTGCTGCTGC +
Preference number: 6 (lower is better)
Translates to: GALRSSGYPDGL*YWLLLGSCCCC
Trigger: GCAGCAGCAGCAAGACCCGAGCAGGAGCCAATAGCAAAGGCCGTCGGGGTAGCCAGAACTCCTCAGAGCACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS GCA 72 bp AGGACACAGGCACATGGACACTTGGTCGGGGCTCCTTaGTCCCGAGGCGGGATTCCTCAGATGGGGGTAGCT +
Preference number: 6 (lower is better)
Translates to: RTQAHGHLVGAP*SRGGIPQMGVA
Trigger: AGCTACCCCCATCTGAGGAATCCCGCCTCGGGAGCAAGGAGCCCCGACCAAGTGTCCATGTGCCTGTGTCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 72 bp CTGAGGAGTTCTGGCTACCCCGACGGCCTTTGCTATTaGCTCCTGCTCGGGTCTTGCTGCTGCTGCTGGTCC +
Preference number: 6 (lower is better)
Translates to: LRSSGYPDGLCY*LLLGSCCCCWS
Trigger: GGACCAGCAGCAGCAGCAAGACCCGAGCAGGAGCCAATAGCAAAGGCCGTCGGGGTAGCCAGAACTCCTCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 72 bp CCTTGGTCCCAGGGAGGGGCCCGGTGGCTGAGCCCATaGAATTTGTACGGACACGCTTGCTCCCTTTGGAGT +
Preference number: 6 (lower is better)
Translates to: PWSQGGARWLSP*NLYGHACSLWS
Trigger: ACTCCAAAGGGAGCAAGCGTGTCCGTACAAATTCCATGGGCTCAGCCACCGGGCCCCTCCCTGGGACCAAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 72 bp GAGTGGGTTCTACCTTGGTCCCAGGGAGGGGCCCGGTaGCTGAGCCCATGGAATTTGTACGGACACGCTTGC +
Preference number: 6 (lower is better)
Translates to: EWVLPWSQGGAR*LSPWNLYGHAC
Trigger: GCAAGCGTGTCCGTACAAATTCCATGGGCTCAGCCACCGGGCCCCTCCCTGGGACCAAGGTAGAACCCACTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 72 bp TCAGGACCGGGGAGGGACAATTTCTGTCCACAAGAGTaGGTTCTACCTTGGTCCCAGGGAGGGGCCCGGTGG +
Preference number: 6 (lower is better)
Translates to: SGPGRDNFCPQE*VLPWSQGGARW
Trigger: CCACCGGGCCCCTCCCTGGGACCAAGGTAGAACCCACTCTTGTGGACAGAAATTGTCCCTCCCCGGTCCTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 72 bp TGGACTCTGAGCTGGCTTTACAGCTCACACTGGGGCTaGCACGGGCCTTGTCAGCGTCCTCGCCACCTGAGA +
Preference number: 6 (lower is better)
Translates to: WTLSWLYSSHWG*HGPCQRPRHLR
Trigger: TCTCAGGTGGCGAGGACGCTGACAAGGCCCGTGCCAGCCCCAGTGTGAGCTGTAAAGCCAGCTCAGAGTCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 72 bp CGGTGCTCTGAGGAGTTCTGGCTACCCCGACGGCCTTaGCTATTGGCTCCTGCTCGGGTCTTGCTGCTGCTG +
Preference number: 6 (lower is better)
Translates to: RCSEEFWLPRRP*LLAPARVLLLL
Trigger: CAGCAGCAGCAAGACCCGAGCAGGAGCCAATAGCAAAGGCCGTCGGGGTAGCCAGAACTCCTCAGAGCACCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 72 bp TCCCAGGGAGGGGCCCGGTGGCTGAGCCCATGGAATTaGTACGGACACGCTTGCTCCCTTTGGAGTCCTCTG +
Preference number: 6 (lower is better)
Translates to: SQGGARWLSPWN*YGHACSLWSPL
Trigger: CAGAGGACTCCAAAGGGAGCAAGCGTGTCCGTACAAATTCCATGGGCTCAGCCACCGGGCCCCTCCCTGGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 72 bp ACAGACTTGGCAGGATCTGTCCCAGGCTCCTTGGCCTaGCCGGGCCCTGACTTCACCAGGTCTGTCAGGCTG +
Preference number: 6 (lower is better)
Translates to: TDLAGSVPGSLA*PGPDFTRSVRL
Trigger: CAGCCTGACAGACCTGGTGAAGTCAGGGCCCGGCAAGGCCAAGGAGCCTGGGACAGATCCTGCCAAGTCTGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 90 bp GAGCGGGCAGGGGACAAGGATCCTTTCTGTGGGACAGGTGCACCGTaGCAGCTGAGGTCTGCATGGAGGGCGGGCTCTTCTCCATACTCA +
Preference number: 6 (lower is better)
Translates to: ERAGDKDPFCGTGAP*QLRSAWRAGSSPYS
Trigger: TGAGTATGGAGAAGAGCCCGCCCTCCATGCAGACCTCAGCTGCAACGGTGCACCTGTCCCACAGAAAGGATCCTTGTCCCCTGCCCGCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 90 bp GGAATGATGACAGACTTGGCAGGATCTGTCCCAGGCTCCTTGGCCTaGCCGGGCCCTGACTTCACCAGGTCTGTCAGGCTGGGAGCCTTG +
Preference number: 6 (lower is better)
Translates to: GMMTDLAGSVPGSLA*PGPDFTRSVRLGAL
Trigger: CAAGGCTCCCAGCCTGACAGACCTGGTGAAGTCAGGGCCCGGCAAGGCCAAGGAGCCTGGGACAGATCCTGCCAAGTCTGTCATCATTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS TCA 72 bp TGGTCCCTTTGCTGTCAGAGGCTGCGGCTGCCTCACTaGCAGGTGTGTTACTGCTGGGACGCATGCGCTTGC +
Preference number: 6 (lower is better)
Translates to: WSLCCQRLRLPH*QVCYCWDACAC
Trigger: GCAAGCGCATGCGTCCCAGCAGTAACACACCTGTCAGTGAGGCAGCCGCAGCCTCTGACAGCAAAGGGACCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS GCA 72 bp GCTGCTGCTGGTCCCTTTGCTGTCAGAGGCTGCGGCTaGCTCACTGACAGGTGTGTTACTGCTGGGACGCAT +
Preference number: 6 (lower is better)
Translates to: AAAGPFAVRGCG*LTDRCVTAGTH
Trigger: ATGCGTCCCAGCAGTAACACACCTGTCAGTGAGGCAGCCGCAGCCTCTGACAGCAAAGGGACCAGCAGCAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS GCA 72 bp CTTTGCTATTGGCTCCTGCTCGGGTCTTGCTGCTGCTaGTGGTCCCTTTGCTGTCAGAGGCTGCGGCTGCCT +
Preference number: 6 (lower is better)
Translates to: LCYWLLLGSCCC*WSLCCQRLRLP
Trigger: AGGCAGCCGCAGCCTCTGACAGCAAAGGGACCAGCAGCAGCAGCAAGACCCGAGCAGGAGCCAATAGCAAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 72 bp AGGGACAATTTCTGTCCACAAGAGTGGGTTCTACCTTaGTCCCAGGGAGGGGCCCGGTGGCTGAGCCCATGG +
Preference number: 6 (lower is better)
Translates to: RDNFCPQEWVLP*SQGGARWLSPW
Trigger: CCATGGGCTCAGCCACCGGGCCCCTCCCTGGGACCAAGGTAGAACCCACTCTTGTGGACAGAAATTGTCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 72 bp TCTGAGGAGTTCTGGCTACCCCGACGGCCTTTGCTATaGGCTCCTGCTCGGGTCTTGCTGCTGCTGCTGGTC +
Preference number: 6 (lower is better)
Translates to: SEEFWLPRRPLL*APARVLLLLLV
Trigger: GACCAGCAGCAGCAGCAAGACCCGAGCAGGAGCCAATAGCAAAGGCCGTCGGGGTAGCCAGAACTCCTCAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 72 bp CCACACTCAGTGCCCGTCTTAGCCTCAGACGCCTCCTaGCCTAGGTGGCTGGCCTCACCCAGCTTCCCTTTA +
Preference number: 6 (lower is better)
Translates to: PHSVPVLASDAS*PRWLASPSFPL
Trigger: TAAAGGGAAGCTGGGTGAGGCCAGCCACCTAGGCAAGGAGGCGTCTGAGGCTAAGACGGGCACTGAGTGTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS TCA 72 bp GCTGTGAGGCTCAACAAGCCGAACTTTGGGGGTAGCTaGGCGGGCAGGGGACAAGGATCCTTTCTGTGGGAC +
Preference number: 6 (lower is better)
Translates to: AVRLNKPNFGGS*AGRGQGSFLWD
Trigger: GTCCCACAGAAAGGATCCTTGTCCCCTGCCCGCTCAGCTACCCCCAAAGTTCGGCTTGTTGAGCCTCACAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS TCA 72 bp ACAGGGACTGCATGTACATGTTGGGCCGCTGCTGGATaGCGGAGGGCTGCTGACTGGAATTGCTCAGCTCCG +
Preference number: 6 (lower is better)
Translates to: TGTACTCWAAAG*RRAADWNCSAP
Trigger: CGGAGCTGAGCAATTCCAGTCAGCAGCCCTCCGTCATCCAGCAGCGGCCCAACATGTACATGCAGTCCCTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS GCA 72 bp CGTCTCCTGTCGGTACCAGAGTATTGGATCCACCTCTaGCTGTCGGCCACACTCAGTGCCCGTCTTAGCCTC +
Preference number: 6 (lower is better)
Translates to: RLLSVPEYWIHL*LSATLSARLSL
Trigger: GAGGCTAAGACGGGCACTGAGTGTGGCCGACAGGCAGAGGTGGATCCAATACTCTGGTACCGACAGGAGACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 72 bp TGCCTCTTCCTCGGCCGTTCCGCATTTCCAAGTCACTaGTGGGGGAGTCACAGAACCTTGGGGGTGCCCAAT +
Preference number: 6 (lower is better)
Translates to: CLFLGRSAFPSH*WGSHRTLGVPN
Trigger: ATTGGGCACCCCCAAGGTTCTGTGACTCCCCCACCAGTGACTTGGAAATGCGGAACGGCCGAGGAAGAGGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 72 bp TGTGGGACAGGTGCACCGTTGCAGCTGAGGTCTGCATaGAGGGCGGGCTCTTCTCCATACTCACTGTCTCCA +
Preference number: 6 (lower is better)
Translates to: CGTGAPLQLRSA*RAGSSPYSLSP
Trigger: TGGAGACAGTGAGTATGGAGAAGAGCCCGCCCTCCATGCAGACCTCAGCTGCAACGGTGCACCTGTCCCACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 72 bp GTTGCTGCAAGATGTCCAGGGCTTTGGACTCTGAGCTaGCTTTACAGCTCACACTGGGGCTGGCACGGGCCT +
Preference number: 6 (lower is better)
Translates to: VAARCPGLWTLS*LYSSHWGWHGP
Trigger: AGGCCCGTGCCAGCCCCAGTGTGAGCTGTAAAGCCAGCTCAGAGTCCAAAGCCCTGGACATCTTGCAGCAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 90 bp GCCTTGCCGGGCCCTGACTTCACCAGGTCTGTCAGGCTGGGAGCCTaGGTGAGAGTTGGTGGAATTGAGGGCTTTTGCTTCCACTCTTCC +
Preference number: 6 (lower is better)
Translates to: ALPGPDFTRSVRLGA*VRVGGIEGFCFHSS
Trigger: GGAAGAGTGGAAGCAAAAGCCCTCAATTCCACCAACTCTCACCAAGGCTCCCAGCCTGACAGACCTGGTGAAGTCAGGGCCCGGCAAGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 90 bp GGGCCTAAGCACTCAGGCTCTGTGGCTAGAGCCACGTCGCATGTGTaGACACCAACTGATCGGGTACGGACCATGATCTGCTCACAGGGA +
Preference number: 6 (lower is better)
Translates to: GPKHSGSVARATSHV*TPTDRVRTMICSQG
Trigger: TCCCTGTGAGCAGATCATGGTCCGTACCCGATCAGTTGGTGTCAACACATGCGACGTGGCTCTAGCCACAGAGCCTGAGTGCTTAGGCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 90 bp GGGAGGGGCCCGGTGGCTGAGCCCATGGAATTTGTACGGACACGCTaGCTCCCTTTGGAGTCCTCTGAGCTAGAATTCAGCTCCATGTCT +
Preference number: 6 (lower is better)
Translates to: GRGPVAEPMEFVRTR*LPLESSELEFSSMS
Trigger: AGACATGGAGCTGAATTCTAGCTCAGAGGACTCCAAAGGGAGCAAGCGTGTCCGTACAAATTCCATGGGCTCAGCCACCGGGCCCCTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS TCA 72 bp AGGATCCTTTCTGTGGGACAGGTGCACCGTTGCAGCTaGGGTCTGCATGGAGGGCGGGCTCTTCTCCATACT +
Preference number: 6 (lower is better)
Translates to: RILSVGQVHRCS*GLHGGRALLHT
Trigger: AGTATGGAGAAGAGCCCGCCCTCCATGCAGACCTCAGCTGCAACGGTGCACCTGTCCCACAGAAAGGATCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS GCA 72 bp ACTCCCAAGCGGCTCCACGGTTCCTGTGTCCATCCCTaGACTTCCATCATACTGACTACCCCGTCCTCCCAA +
Preference number: 6 (lower is better)
Translates to: TPKRLHGSCVHP*TSIILTTPSSQ
Trigger: TTGGGAGGACGGGGTAGTCAGTATGATGGAAGTGCAGGGATGGACACAGGAACCGTGGAGCCGCTTGGGAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS GCA 72 bp TTTCTGTGGGACAGGTGCACCGTTGCAGCTGAGGTCTaGATGGAGGGCGGGCTCTTCTCCATACTCACTGTC +
Preference number: 6 (lower is better)
Translates to: FLWDRCTVAAEV*MEGGLFSILTV
Trigger: GACAGTGAGTATGGAGAAGAGCCCGCCCTCCATGCAGACCTCAGCTGCAACGGTGCACCTGTCCCACAGAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 72 bp CACCATCTCCTGCGCGACCCTGCACCTCTTTCTTGCTaGCTGCTCCCTCACTTGGAGAGAACAAGGAAGTCC +
Preference number: 6 (lower is better)
Translates to: HHLLRDPAPLSC*LLPHLERTRKS
Trigger: GGACTTCCTTGTTCTCTCCAAGTGAGGGAGCAGCCAGCAAGAAAGAGGTGCAGGGTCGCGCAGGAGATGGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 72 bp CTCTTCCTCGGCCGTTCCGCATTTCCAAGTCACTGGTaGGGGAGTCACAGAACCTTGGGGGTGCCCAATCAT +
Preference number: 6 (lower is better)
Translates to: LFLGRSAFPSHW*GSHRTLGVPNH
Trigger: ATGATTGGGCACCCCCAAGGTTCTGTGACTCCCCCACCAGTGACTTGGAAATGCGGAACGGCCGAGGAAGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 72 bp CCCATTCATCCCCACTGTCGTATGTCTCAACCGGGTTaGCATCCACTCCTTTCCCTCCGCAGGCTCCACTGC +
Preference number: 6 (lower is better)
Translates to: PIHPHCRMSQPG*HPLLSLRRLHC
Trigger: GCAGTGGAGCCTGCGGAGGGAAAGGAGTGGATGCAAACCCGGTTGAGACATACGACAGTGGGGATGAATGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159109.2
ENSMUST00000160747.2
CDS CAA 90 bp CACTCATTCTCCCCTTCCTCTGGCTCCGGCTTAGTTCCCAAAGGATaGAGCGCTGCCCCAGGTTCAATAGCTATACTCCCAAGCGGCTCC +
Preference number: 6 (lower is better)
Translates to: HSFSPSSGSGLVPKG*SAAPGSIAILPSGS
Trigger: GGAGCCGCTTGGGAGTATAGCTATTGAACCTGGGGCAGCGCTCAATCCTTTGGGAACTAAGCCGGAGCCAGAGGAAGGGGAGAATGAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 90 bp CGGGTACGGACCATGATCTGCTCACAGGGAGATGAGATGTCATTATaGACCACTGGCACTAACAGGTGCAGTGGCAGCACCGCTGGGGTG +
Preference number: 6 (lower is better)
Translates to: RVRTMICSQGDEMSL*TTGTNRCSGSTAGV
Trigger: CACCCCAGCGGTGCTGCCACTGCACCTGTTAGTGCCAGTGGTCAATAATGACATCTCATCTCCCTGTGAGCAGATCATGGTCCGTACCCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS TCA 72 bp TACATGTTGGGCCGCTGCTGGATGACGGAGGGCTGCTaGCTGGAATTGCTCAGCTCCGGCTTCTTTTCCTCA +
Preference number: 6 (lower is better)
Translates to: YMLGRCWMTEGC*LELLSSGFFSS
Trigger: TGAGGAAAAGAAGCCGGAGCTGAGCAATTCCAGTCAGCAGCCCTCCGTCATCCAGCAGCGGCCCAACATGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS GCA 72 bp CCATTCATCCCCACTGTCGTATGTCTCAACCGGGTTTaGATCCACTCCTTTCCCTCCGCAGGCTCCACTGCT +
Preference number: 6 (lower is better)
Translates to: PFIPTVVCLNRV*IHSFPSAGSTA
Trigger: AGCAGTGGAGCCTGCGGAGGGAAAGGAGTGGATGCAAACCCGGTTGAGACATACGACAGTGGGGATGAATGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159109.2
ENSMUST00000160747.2
CDS GCA 72 bp CTCTGGCTCCGGCTTAGTTCCCAAAGGATTGAGCGCTaGCCCAGGTTCAATAGCTATACTCCCAAGCGGCTC +
Preference number: 6 (lower is better)
Translates to: LWLRLSSQRIER*PRFNSYTPKRL
Trigger: GAGCCGCTTGGGAGTATAGCTATTGAACCTGGGGCAGCGCTCAATCCTTTGGGAACTAAGCCGGAGCCAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS GCA 72 bp TCCTGCTGCGTCTCTGAACGGGCTCTTACCTTCTTCTaGTCGGCATACCTTCCCAGGGGTCAGAGGACTTTC +
Preference number: 6 (lower is better)
Translates to: SCCVSERALTFF*SAYLPRGQRTF
Trigger: GAAAGTCCTCTGACCCCTGGGAAGGTATGCCGAGCAGAAGAAGGTAAGAGCCCGTTCAGAGACGCAGCAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS GCA 72 bp TGCTCCCGAGGCGGGATTCCTCAGATGGGGGTAGCTTaGAGTCACTACTTGTGCTTTCCTTCCCGTCTTCCT +
Preference number: 6 (lower is better)
Translates to: CSRGGIPQMGVA*SHYLCFPSRLP
Trigger: AGGAAGACGGGAAGGAAAGCACAAGTAGTGACTGCAAGCTACCCCCATCTGAGGAATCCCGCCTCGGGAGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 72 bp TCATCACAGCAGGCATCCCCCGGTAGCTGGGGTGGTTaGGGTCATATGACTGGCTGTAAGAGTAGCCATGCA +
Preference number: 6 (lower is better)
Translates to: SSQQASPGSWGG*GHMTGCKSSHA
Trigger: TGCATGGCTACTCTTACAGCCAGTCATATGACCCCAACCACCCCAGCTACCGGGGGATGCCTGCTGTGATGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 72 bp CACTCAGGCTCTGTGGCTAGAGCCACGTCGCATGTGTaGACACCAACTGATCGGGTACGGACCATGATCTGC +
Preference number: 6 (lower is better)
Translates to: HSGSVARATSHV*TPTDRVRTMIC
Trigger: GCAGATCATGGTCCGTACCCGATCAGTTGGTGTCAACACATGCGACGTGGCTCTAGCCACAGAGCCTGAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 72 bp TCCCATAACAGTGGGCTTGGGCTGAATGGGCTTGAGTaGGGGACTGTTGGGCATTGCTTGGACCACGGTGGT +
Preference number: 6 (lower is better)
Translates to: SHNSGLGLNGLE*GTVGHCLDHGG
Trigger: ACCACCGTGGTCCAAGCAATGCCCAACAGTCCCCAACTCAAGCCCATTCAGCCCAAGCCCACTGTTATGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 72 bp TGGGACTCTGAGGAGCCGTTCAGAAGGCTCTCCACTTaGATTCCATCTCCTGCTGCGTCTCTGAACGGGCTC +
Preference number: 6 (lower is better)
Translates to: WDSEEPFRRLST*IPSPAASLNGL
Trigger: GAGCCCGTTCAGAGACGCAGCAGGAGATGGAATCAAAGTGGAGAGCCTTCTGAACGGCTCCTCAGAGTCCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 72 bp GGCCCTGACTTCACCAGGTCTGTCAGGCTGGGAGCCTaGGTGAGAGTTGGTGGAATTGAGGGCTTTTGCTTC +
Preference number: 6 (lower is better)
Translates to: GPDFTRSVRLGA*VRVGGIEGFCF
Trigger: GAAGCAAAAGCCCTCAATTCCACCAACTCTCACCAAGGCTCCCAGCCTGACAGACCTGGTGAAGTCAGGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 90 bp CTCCAATGTCCCATTCATCCCCACTGTCGTATGTCTCAACCGGGTTaGCATCCACTCCTTTCCCTCCGCAGGCTCCACTGCTCAAGGACA +
Preference number: 6 (lower is better)
Translates to: LQCPIHPHCRMSQPG*HPLLSLRRLHCSRT
Trigger: TGTCCTTGAGCAGTGGAGCCTGCGGAGGGAAAGGAGTGGATGCAAACCCGGTTGAGACATACGACAGTGGGGATGAATGGGACATTGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000159109.2
ENSMUST00000160747.2
CDS CAA 90 bp CGGCTTTGGTGGGACTCTGAGGAGCCGTTCAGAAGGCTCTCCACTTaGATTCCATCTCCTGCTGCGTCTCTGAACGGGCTCTTACCTTCT +
Preference number: 6 (lower is better)
Translates to: RLWWDSEEPFRRLST*IPSPAASLNGLLPS
Trigger: AGAAGGTAAGAGCCCGTTCAGAGACGCAGCAGGAGATGGAATCAAAGTGGAGAGCCTTCTGAACGGCTCCTCAGAGTCCCACCAAAGCCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 90 bp CTGGGGAGTTTTGATGAGTCATCTAACTTGGGAATGATGACAGACTaGGCAGGATCTGTCCCAGGCTCCTTGGCCTTGCCGGGCCCTGAC +
Preference number: 6 (lower is better)
Translates to: LGSFDESSNLGMMTD*AGSVPGSLALPGPD
Trigger: GTCAGGGCCCGGCAAGGCCAAGGAGCCTGGGACAGATCCTGCCAAGTCTGTCATCATTCCCAAGTTAGATGACTCATCAAAACTCCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 90 bp TCCCGAGGCGGGATTCCTCAGATGGGGGTAGCTTGCAGTCACTACTaGTGCTTTCCTTCCCGTCTTCCTTGGGAACAGAGTCCTTACTCC +
Preference number: 6 (lower is better)
Translates to: SRGGIPQMGVACSHY*CFPSRLPWEQSPYS
Trigger: GGAGTAAGGACTCTGTTCCCAAGGAAGACGGGAAGGAAAGCACAAGTAGTGACTGCAAGCTACCCCCATCTGAGGAATCCCGCCTCGGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS GCA 72 bp ATCCCCACCTCCTTGGAGCCTGACATTTCCAGTTTCTaGTGGTCCTTTTCCAGATCGGCGTCCAGGTCGATG +
Preference number: 6 (lower is better)
Translates to: IPTSLEPDISSF*WSFSRSASRSM
Trigger: CATCGACCTGGACGCCGATCTGGAAAAGGACCAGCAGAAACTGGAAATGTCAGGCTCCAAGGAGGTGGGGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS GCA 72 bp GGAGCCTTGGTGAGAGTTGGTGGAATTGAGGGCTTTTaGTTCCACTCTTCCTTGAGCGATGCCTCCCGCTCT +
Preference number: 6 (lower is better)
Translates to: GALVRVGGIEGF*FHSSLSDASRS
Trigger: AGAGCGGGAGGCATCGCTCAAGGAAGAGTGGAAGCAAAAGCCCTCAATTCCACCAACTCTCACCAAGGCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 72 bp GGCTGCTCCCTCACTTGGAGAGAACAAGGAAGTCCCTaGAGTGGGCTTGCTAGCGTCTTTGCCACTCTTACT +
Preference number: 6 (lower is better)
Translates to: GCSLTWREQGSP*SGLASVFATLT
Trigger: AGTAAGAGTGGCAAAGACGCTAGCAAGCCCACTCCAGGGACTTCCTTGTTCTCTCCAAGTGAGGGAGCAGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 72 bp TCAGCCTCAGCCTTGATACTAGCTAACCGGCTTTGGTaGGACTCTGAGGAGCCGTTCAGAAGGCTCTCCACT +
Preference number: 6 (lower is better)
Translates to: SASALILANRLW*DSEEPFRRLST
Trigger: AGTGGAGAGCCTTCTGAACGGCTCCTCAGAGTCCCACCAAAGCCGGTTAGCTAGTATCAAGGCTGAGGCTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 72 bp AGTTCTGCATCATCACAGCAGGCATCCCCCGGTAGCTaGGGTGGTTGGGGTCATATGACTGGCTGTAAGAGT +
Preference number: 6 (lower is better)
Translates to: SSASSQQASPGS*GGWGHMTGCKS
Trigger: ACTCTTACAGCCAGTCATATGACCCCAACCACCCCAGCTACCGGGGGATGCCTGCTGTGATGATGCAGAACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 72 bp AGTGACTGGCATGTTGCTGCAAGATGTCCAGGGCTTTaGACTCTGAGCTGGCTTTACAGCTCACACTGGGGC +
Preference number: 6 (lower is better)
Translates to: SDWHVAARCPGL*TLSWLYSSHWG
Trigger: GCCCCAGTGTGAGCTGTAAAGCCAGCTCAGAGTCCAAAGCCCTGGACATCTTGCAGCAACATGCCAGTCACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 72 bp TCCCCTTCCTCTGGCTCCGGCTTAGTTCCCAAAGGATaGAGCGCTGCCCCAGGTTCAATAGCTATACTCCCA +
Preference number: 6 (lower is better)
Translates to: SPSSGSGLVPKG*SAAPGSIAILP
Trigger: TGGGAGTATAGCTATTGAACCTGGGGCAGCGCTCAATCCTTTGGGAACTAAGCCGGAGCCAGAGGAAGGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 72 bp CCGGTGGCTGAGCCCATGGAATTTGTACGGACACGCTaGCTCCCTTTGGAGTCCTCTGAGCTAGAATTCAGC +
Preference number: 6 (lower is better)
Translates to: PVAEPMEFVRTR*LPLESSELEFS
Trigger: GCTGAATTCTAGCTCAGAGGACTCCAAAGGGAGCAAGCGTGTCCGTACAAATTCCATGGGCTCAGCCACCGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 72 bp CTTTCCCTTCTACGCTCTCAGGCTCCTCATCCTTTTTaGTCTTTAGGGGCTGGCCCTCCATTCCTGCCTGGC +
Preference number: 6 (lower is better)
Translates to: LSLLRSQAPHPF*SLGAGPPFLPG
Trigger: GCCAGGCAGGAATGGAGGGCCAGCCCCTAAAGACAAAAAAGGATGAGGAGCCTGAGAGCGTAGAAGGGAAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS TCA 72 bp TCAGCTTCCGGTTTGCTGTCGTCATCCGTGTGGGCGTaGGCTTGGTGGTACTTAAGCCCATTGATGTGCTTG +
Preference number: 6 (lower is better)
Translates to: SASGLLSSSVWA*AWWYLSPLMCL
Trigger: CAAGCACATCAATGGGCTTAAGTACCACCAAGCTCACGCCCACACGGATGACGACAGCAAACCGGAAGCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS TCA 72 bp TTGGTGGAATTGAGGGCTTTTGCTTCCACTCTTCCTTaGGCGATGCCTCCCGCTCTTTCAGGCCCATCTCTG +
Preference number: 6 (lower is better)
Translates to: LVELRAFASTLP*AMPPALSGPSL
Trigger: CAGAGATGGGCCTGAAAGAGCGGGAGGCATCGCTCAAGGAAGAGTGGAAGCAAAAGCCCTCAATTCCACCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS TCA 72 bp TGTCAGGCTGGGAGCCTTGGTGAGAGTTGGTGGAATTaGGGGCTTTTGCTTCCACTCTTCCTTGAGCGATGC +
Preference number: 6 (lower is better)
Translates to: CQAGSLGESWWN*GLLLPLFLERC
Trigger: GCATCGCTCAAGGAAGAGTGGAAGCAAAAGCCCTCAATTCCACCAACTCTCACCAAGGCTCCCAGCCTGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS GCA 72 bp GCCGTTCAGAAGGCTCTCCACTTTGATTCCATCTCCTaGTGCGTCTCTGAACGGGCTCTTACCTTCTTCTGC +
Preference number: 6 (lower is better)
Translates to: AVQKALHFDSIS*CVSERALTFFC
Trigger: GCAGAAGAAGGTAAGAGCCCGTTCAGAGACGCAGCAGGAGATGGAATCAAAGTGGAGAGCCTTCTGAACGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 72 bp TTATCAGCCTCAGCCTTGATACTAGCTAACCGGCTTTaGTGGGACTCTGAGGAGCCGTTCAGAAGGCTCTCC +
Preference number: 6 (lower is better)
Translates to: LSASALILANRL*WDSEEPFRRLS
Trigger: GGAGAGCCTTCTGAACGGCTCCTCAGAGTCCCACCAAAGCCGGTTAGCTAGTATCAAGGCTGAGGCTGATAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 72 bp TGCAGTCACTACTTGTGCTTTCCTTCCCGTCTTCCTTaGGAACAGAGTCCTTACTCCGGCTCCTGTCCTCCT +
Preference number: 6 (lower is better)
Translates to: CSHYLCFPSRLP*EQSPYSGSCPP
Trigger: AGGAGGACAGGAGCCGGAGTAAGGACTCTGTTCCCAAGGAAGACGGGAAGGAAAGCACAAGTAGTGACTGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 72 bp GTTGGTGGAATTGAGGGCTTTTGCTTCCACTCTTCCTaGAGCGATGCCTCCCGCTCTTTCAGGCCCATCTCT +
Preference number: 6 (lower is better)
Translates to: VGGIEGFCFHSS*SDASRSFRPIS
Trigger: AGAGATGGGCCTGAAAGAGCGGGAGGCATCGCTCAAGGAAGAGTGGAAGCAAAAGCCCTCAATTCCACCAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS TCA 72 bp AGAGATGTCAGAGTAGGCAGGGCTATTGGTTTTGACTaGGCTGGCTTCGGCTCCATTCTGGGTCACTACGTG +
Preference number: 6 (lower is better)
Translates to: RDVRVGRAIGFD*AGFGSILGHYV
Trigger: CACGTAGTGACCCAGAATGGAGCCGAAGCCAGCTCAGTCAAAACCAATAGCCCTGCCTACTCTGACATCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS GCA 72 bp GTGGGGGAGTCACAGAACCTTGGGGGTGCCCAATCATaGCTTGTGCAGTCAAGAAGTGTACCTACATATGTC +
Preference number: 6 (lower is better)
Translates to: VGESQNLGGAQS*LVQSRSVPTYV
Trigger: GACATATGTAGGTACACTTCTTGACTGCACAAGGCATGATTGGGCACCCCCAAGGTTCTGTGACTCCCCCAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CCA 72 bp TCTGCTGTTCTTCATACTGCTGCCGATAAGCGGTGTTaGTACTCAGGAGGTGGCTGTGGTAACTCTGGTCAC +
Preference number: 6 (lower is better)
Translates to: SAVLHTAADKRC*YSGGGCGNSGH
Trigger: GTGACCAGAGTTACCACAGCCACCTCCTGAGTACCAACACCGCTTATCGGCAGCAGTATGAAGAACAGCAGA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 90 bp TTGCTTGTTTCATCCATTACCGAGGGCCCGTCATCAGAGCCATCATaGGATAAGGCTCCAGGGTCTGTGTCTCCCTCCCCACTCAGTTTT +
Preference number: 6 (lower is better)
Translates to: LLVSSITEGPSSEPS*DKAPGSVSPSPLSF
Trigger: AAAACTGAGTGGGGAGGGAGACACAGACCCTGGAGCCTTATCCAATGATGGCTCTGATGACGGGCCCTCGGTAATGGATGAAACAAGCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 90 bp TTGGTGAGAGTTGGTGGAATTGAGGGCTTTTGCTTCCACTCTTCCTaGAGCGATGCCTCCCGCTCTTTCAGGCCCATCTCTGTCTTCTTG +
Preference number: 6 (lower is better)
Translates to: LVRVGGIEGFCFHSS*SDASRSFRPISVFL
Trigger: CAAGAAGACAGAGATGGGCCTGAAAGAGCGGGAGGCATCGCTCAAGGAAGAGTGGAAGCAAAAGCCCTCAATTCCACCAACTCTCACCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 90 bp GGGGGTAGCTTGCAGTCACTACTTGTGCTTTCCTTCCCGTCTTCCTaGGGAACAGAGTCCTTACTCCGGCTCCTGTCCTCCTTTAATTTT +
Preference number: 6 (lower is better)
Translates to: GGSLQSLLVLSFPSS*GTESLLRLLSSFNF
Trigger: AAAATTAAAGGAGGACAGGAGCCGGAGTAAGGACTCTGTTCCCAAGGAAGACGGGAAGGAAAGCACAAGTAGTGACTGCAAGCTACCCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 72 bp TTTGATGAGTCATCTAACTTGGGAATGATGACAGACTaGGCAGGATCTGTCCCAGGCTCCTTGGCCTTGCCG +
Preference number: 6 (lower is better)
Translates to: FDESSNLGMMTD*AGSVPGSLALP
Trigger: CGGCAAGGCCAAGGAGCCTGGGACAGATCCTGCCAAGTCTGTCATCATTCCCAAGTTAGATGACTCATCAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 72 bp GGGAGTCACAGAACCTTGGGGGTGCCCAATCATGCCTaGTGCAGTCAAGAAGTGTACCTACATATGTCTTGT +
Preference number: 6 (lower is better)
Translates to: GSHRTLGVPNHA*CSQEVYLHMSC
Trigger: ACAAGACATATGTAGGTACACTTCTTGACTGCACAAGGCATGATTGGGCACCCCCAAGGTTCTGTGACTCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS GCA 72 bp GTGTTGACACCAACTGATCGGGTACGGACCATGATCTaGTCACAGGGAGATGAGATGTCATTATTGACCACT +
Preference number: 6 (lower is better)
Translates to: VLTPTDRVRTMI*SQGDEMSLLTT
Trigger: AGTGGTCAATAATGACATCTCATCTCCCTGTGAGCAGATCATGGTCCGTACCCGATCAGTTGGTGTCAACAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 90 bp CCTTTTCCATACACTTCCTTTCCAAAGAGTCAAAGGCATCATTGCTaGTTTCATCCATTACCGAGGGCCCGTCATCAGAGCCATCATTGG +
Preference number: 6 (lower is better)
Translates to: PFPYTSFPKSQRHHC*FHPLPRARHQSHHW
Trigger: CCAATGATGGCTCTGATGACGGGCCCTCGGTAATGGATGAAACAAGCAATGATGCCTTTGACTCTTTGGAAAGGAAGTGTATGGAAAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS TCA 72 bp GGTCCCGTTCCTCTTTCCACCGATCATCCTCTGACTTaGTGTCTGAGTATTTGGCAGGATAAACATATGTCC +
Preference number: 6 (lower is better)
Translates to: GPVPLSTDHPLT*CLSIWQDKHMS
Trigger: GGACATATGTTTATCCTGCCAAATACTCAGACATCAAGTCAGAGGATGATCGGTGGAAAGAGGAACGGGACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS GCA 72 bp CCATACACTTCCTTTCCAAAGAGTCAAAGGCATCATTaGTTGTTTCATCCATTACCGAGGGCCCGTCATCAG +
Preference number: 6 (lower is better)
Translates to: PYTSFPKSQRHH*LFHPLPRARHQ
Trigger: CTGATGACGGGCCCTCGGTAATGGATGAAACAAGCAATGATGCCTTTGACTCTTTGGAAAGGAAGTGTATGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 72 bp TACACTTCCTTTCCAAAGAGTCAAAGGCATCATTGCTaGTTTCATCCATTACCGAGGGCCCGTCATCAGAGC +
Preference number: 6 (lower is better)
Translates to: YTSFPKSQRHHC*FHPLPRARHQS
Trigger: GCTCTGATGACGGGCCCTCGGTAATGGATGAAACAAGCAATGATGCCTTTGACTCTTTGGAAAGGAAGTGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 72 bp TCCATACACTTCCTTTCCAAAGAGTCAAAGGCATCATaGCTTGTTTCATCCATTACCGAGGGCCCGTCATCA +
Preference number: 6 (lower is better)
Translates to: SIHFLSKESKAS*LVSSITEGPSS
Trigger: TGATGACGGGCCCTCGGTAATGGATGAAACAAGCAATGATGCCTTTGACTCTTTGGAAAGGAAGTGTATGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 72 bp CTGTGCATAACCTGGAGAGTAGTAACTTTCAAAGCCTaGATAATATGGGGAGTCTTTGCTCTGTGGCTGAGG +
Preference number: 6 (lower is better)
Translates to: LCITWRVVTFKA*IIWGVFALWLR
Trigger: CCTCAGCCACAGAGCAAAGACTCCCCATATTATCAAGGCTTTGAAAGTTACTACTCTCCAGGTTATGCACAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 90 bp TTTTCCTTTTCCATACACTTCCTTTCCAAAGAGTCAAAGGCATCATaGCTTGTTTCATCCATTACCGAGGGCCCGTCATCAGAGCCATCA +
Preference number: 6 (lower is better)
Translates to: FSFSIHFLSKESKAS*LVSSITEGPSSEPS
Trigger: TGATGGCTCTGATGACGGGCCCTCGGTAATGGATGAAACAAGCAATGATGCCTTTGACTCTTTGGAAAGGAAGTGTATGGAAAAGGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 90 bp GCCCAATCATGCCTTGTGCAGTCAAGAAGTGTACCTACATATGTCTaGTTTCTCCATGTCACATTTACCACCAACATCCCATCTTCTGTT +
Preference number: 6 (lower is better)
Translates to: AQSCLVQSRSVPTYV*FLHVTFTTNIPSSV
Trigger: AACAGAAGATGGGATGTTGGTGGTAAATGTGACATGGAGAAACAAGACATATGTAGGTACACTTCTTGACTGCACAAGGCATGATTGGGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2
CDS CAA 72 bp TGCCTTGTGCAGTCAAGAAGTGTACCTACATATGTCTaGTTTCTCCATGTCACATTTACCACCAACATCCCA +
Preference number: 6 (lower is better)
Translates to: CLVQSRSVPTYV*FLHVTFTTNIP
Trigger: TGGGATGTTGGTGGTAAATGTGACATGGAGAAACAAGACATATGTAGGTACACTTCTTGACTGCACAAGGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159109.2