RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZFP580 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000055633

Ensembl transcript IDs: ENSMUST00000069324.7, ENSMUST00000208570.2

Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TGCAAAGGCTTACACAGCACAGCCGGACTGAAGCCCAGTTCCAACTaGCACCCAGGCCCAGAGGGGCAACAACTTTGGTCTACATCACAC +
Preference number: 1 (lower is better)
Translates to: CKGLHSTAGLKPSSN*HPGPEGQQLWSTSH
Trigger: GTGTGATGTAGACCAAAGTTGTTGCCCCTCTGGGCCTGGGTGTCAGTTGGAACTGGGCTTCAGTCCGGCTGTGCTGTGTAAGCCTTTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069324.7
3UTR GCA 90 bp CTTGGGAAGAGTAGACCACCAAGACTCAGGAGAGGTCGTAACGTTTaGAAAGGCTTACACAGCACAGCCGGACTGAAGCCCAGTTCCAAC +
Preference number: 1 (lower is better)
Translates to: LGKSRPPRLRRGRNV*KGLHSTAGLKPSSN
Trigger: GTTGGAACTGGGCTTCAGTCCGGCTGTGCTGTGTAAGCCTTTGCAAACGTTACGACCTCTCCTGAGTCTTGGTGGTCTACTCTTCCCAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069324.7
3UTR-3UTR TCA 90 bp AGCCCAGTTCCAACTGACACCCAGGCCCAGAGGGGCAACAACTTTGGTCTACATGGGTATGTGTGGGAGTaGCGCTGTGTGGTGATCCGG +
Preference number: 2 (lower is better)
Translates to: SPVPTDTQAQRGNNFGLHGYVWE*RCVVIR
Trigger: CCGGATCACCACACAGCGTCACTCCCACACATACCC...ATGTAGACCAAAGTTGTTGCCCCTCTGGGCCTGGGTGTCAGTTGGAACTGGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069324.7
3UTR-3UTR CCA 90 bp CTTACACAGCACAGCCGGACTGAAGCCCAGTTCCAACTGACACCCAGGCCCAGAAATGATATTTCTCCTTaGGGATGGGTGGGGAAACTG +
Preference number: 2 (lower is better)
Translates to: LTQHSRTEAQFQLTPRPRNDISP*GWVGKL
Trigger: CAGTTTCCCCACCCATCCCCAAGGAGAAATATCATT...TCTGGGCCTGGGTGTCAGTTGGAACTGGGCTTCAGTCCGGCTGTGCTGTGTAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069324.7
3UTR TCA 72 bp TTACACAGCACAGCCGGACTGAAGCCCAGTTCCAACTaGCACCCAGGCCCAGAGGGGCAACAACTTTGGTCT +
Preference number: 3 (lower is better)
Translates to: LHSTAGLKPSSN*HPGPEGQQLWS
Trigger: AGACCAAAGTTGTTGCCCCTCTGGGCCTGGGTGTCAGTTGGAACTGGGCTTCAGTCCGGCTGTGCTGTGTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069324.7
3UTR GCA 72 bp AGTAGACCACCAAGACTCAGGAGAGGTCGTAACGTTTaGAAAGGCTTACACAGCACAGCCGGACTGAAGCCC +
Preference number: 3 (lower is better)
Translates to: SRPPRLRRGRNV*KGLHSTAGLKP
Trigger: GGGCTTCAGTCCGGCTGTGCTGTGTAAGCCTTTGCAAACGTTACGACCTCTCCTGAGTCTTGGTGGTCTACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069324.7
CDS-3UTR GCA 90 bp CTTACACAGCACAGCCGGACTGAAGCCCAGTTCCAACTGACACCCAGGCCCAGATGCAGGCGCACGTGCTaGGCCAGCTCCGCGGCGTCC +
Preference number: 4 (lower is better)
Translates to: LTQHSRTEAQFQLTPRPRCRRTC*ASSAAS
Trigger: GGACGCCGCGGAGCTGGCGCAGCACGTGCGCCTGCA...TCTGGGCCTGGGTGTCAGTTGGAACTGGGCTTCAGTCCGGCTGTGCTGTGTAAG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069324.7
CDS-3UTR GCA 90 bp CGTAACGTTTGCAAAGGCTTACACAGCACAGCCGGACTGAAGCCCAGTTCCAACCAGTGCAGGCGCACGTaGTGCGCCAGCTCCGCGGCG +
Preference number: 4 (lower is better)
Translates to: RNVCKGLHSTAGLKPSSNQCRRT*CASSAA
Trigger: CGCCGCGGAGCTGGCGCAGCACGTGCGCCTGCACTG...GTTGGAACTGGGCTTCAGTCCGGCTGTGCTGTGTAAGCCTTTGCAAACGTTACG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069324.7
CDS-3UTR CCA 90 bp CTTACACAGCACAGCCGGACTGAAGCCCAGTTCCAACTGACACCCAGGCCCAGAGAGTGCGACACACGGTaGCTCTGCAGCCGCAGAGGG +
Preference number: 4 (lower is better)
Translates to: LTQHSRTEAQFQLTPRPRECDTR*LCSRRG
Trigger: CCCTCTGCGGCTGCAGAGCCACCGTGTGTCGCACTC...TCTGGGCCTGGGTGTCAGTTGGAACTGGGCTTCAGTCCGGCTGTGCTGTGTAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069324.7
CDS-3UTR TCA 90 bp CGTAACGTTTGCAAAGGCTTACACAGCACAGCCGGACTGAAGCCCAGTTCCAACGGGGCGGTGGGTCCATaGCCTCCGGAGAGGAGGACC +
Preference number: 4 (lower is better)
Translates to: RNVCKGLHSTAGLKPSSNGAVGP*PPERRT
Trigger: GGTCCTCCTCTCCGGAGGTCATGGACCCACCGCCCC...GTTGGAACTGGGCTTCAGTCCGGCTGTGCTGTGTAAGCCTTTGCAAACGTTACG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069324.7
CDS-3UTR TCA 90 bp CAGGCCCAGAGGGGCAACAACTTTGGTCTACATCACACAGCTAGACGGGAGAAACAGAGCGGGCAGGTGTaGGGTGGACCAGCGCGCGCA +
Preference number: 4 (lower is better)
Translates to: QAQRGNNFGLHHTARREKQSGQV*GGPARA
Trigger: TGCGCGCGCTGGTCCACCTCACACCTGCCCGCTCTG...TTTCTCCCGTCTAGCTGTGTGATGTAGACCAAAGTTGTTGCCCCTCTGGGCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069324.7
CDS-3UTR GCA 90 bp CAGGCCCAGAGGGGCAACAACTTTGGTCTACATCACACAGCTAGACGGGAGAAACGGTGGGTGGCGCGGTaGCGCGACAGGTGGCTGGAT +
Preference number: 4 (lower is better)
Translates to: QAQRGNNFGLHHTARREKRWVAR*RDRWLD
Trigger: ATCCAGCCACCTGTCGCGGCACCGCGCCACCCACCG...TTTCTCCCGTCTAGCTGTGTGATGTAGACCAAAGTTGTTGCCCCTCTGGGCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069324.7
CDS-3UTR CCA 90 bp CAGGCCCAGAGGGGCAACAACTTTGGTCTACATCACACAGCTAGACGGGAGAAAGCGTCGATGAGCAGATaGCGGCCCAGCCGCGGTGGC +
Preference number: 4 (lower is better)
Translates to: QAQRGNNFGLHHTARREKASMSR*RPSRGG
Trigger: GCCACCGCGGCTGGGCCGCCATCTGCTCATCGACGC...TTTCTCCCGTCTAGCTGTGTGATGTAGACCAAAGTTGTTGCCCCTCTGGGCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069324.7
CDS-3UTR CCA 90 bp CAGGCCCAGAGGGGCAACAACTTTGGTCTACATCACACAGCTAGACGGGAGAAAGCCCTTGCGAGGACCTaGCTCTCCCGGGGTCGCCTC +
Preference number: 4 (lower is better)
Translates to: QAQRGNNFGLHHTARREKALART*LSRGRL
Trigger: GAGGCGACCCCGGGAGAGCCAGGTCCTCGCAAGGGC...TTTCTCCCGTCTAGCTGTGTGATGTAGACCAAAGTTGTTGCCCCTCTGGGCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069324.7
CDS-3UTR GCA 90 bp AGCCCAGTTCCAACTGACACCCAGGCCCAGAGGGGCAACAACTTTGGTCTACATGACACACGGTGGCTCTaGAGCCGCAGAGGGCTCGCA +
Preference number: 4 (lower is better)
Translates to: SPVPTDTQAQRGNNFGLHDTRWL*SRRGLA
Trigger: TGCGAGCCCTCTGCGGCTGCAGAGCCACCGTGTGTC...ATGTAGACCAAAGTTGTTGCCCCTCTGGGCCTGGGTGTCAGTTGGAACTGGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069324.7
CDS-3UTR CCA 90 bp CGTAACGTTTGCAAAGGCTTACACAGCACAGCCGGACTGAAGCCCAGTTCCAACAGCTCCGCGGCGTCCTaGAAGCGGCGTGGACAGAGC +
Preference number: 4 (lower is better)
Translates to: RNVCKGLHSTAGLKPSSNSSAAS*KRRGQS
Trigger: GCTCTGTCCACGCCGCTTCCAGGACGCCGCGGAGCT...GTTGGAACTGGGCTTCAGTCCGGCTGTGCTGTGTAAGCCTTTGCAAACGTTACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069324.7
CDS-3UTR GCA 90 bp AGCCCAGTTCCAACTGACACCCAGGCCCAGAGGGGCAACAACTTTGGTCTACATGGCAGCTATAGCCCTTaGGAGGACCTGGCTCTCCCG +
Preference number: 4 (lower is better)
Translates to: SPVPTDTQAQRGNNFGLHGSYSP*EDLALP
Trigger: CGGGAGAGCCAGGTCCTCGCAAGGGCTATAGCTGCC...ATGTAGACCAAAGTTGTTGCCCCTCTGGGCCTGGGTGTCAGTTGGAACTGGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069324.7
CDS-3UTR GCA 90 bp AGCCCAGTTCCAACTGACACCCAGGCCCAGAGGGGCAACAACTTTGGTCTACATGGCTTGAGGTCCGAGTaGGACACACGGTGGCTCTGC +
Preference number: 4 (lower is better)
Translates to: SPVPTDTQAQRGNNFGLHGLRSE*DTRWLC
Trigger: GCAGAGCCACCGTGTGTCGCACTCGGACCTCAAGCC...ATGTAGACCAAAGTTGTTGCCCCTCTGGGCCTGGGTGTCAGTTGGAACTGGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069324.7
CDS-3UTR CCA 90 bp CAGGCCCAGAGGGGCAACAACTTTGGTCTACATCACACAGCTAGACGGGAGAAACCACCGAGGAAGAAGTaGAGGAGGGGCCTTCCGCCT +
Preference number: 4 (lower is better)
Translates to: QAQRGNNFGLHHTARREKPPRKK*RRGLPP
Trigger: AGGCGGAAGGCCCCTCCTCCACTTCTTCCTCGGTGG...TTTCTCCCGTCTAGCTGTGTGATGTAGACCAAAGTTGTTGCCCCTCTGGGCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069324.7
CDS-3UTR CCA 90 bp AGCCCAGTTCCAACTGACACCCAGGCCCAGAGGGGCAACAACTTTGGTCTACATGACACGAGCGCACTCTaGGCAGCTATAGCCCTTGCG +
Preference number: 4 (lower is better)
Translates to: SPVPTDTQAQRGNNFGLHDTSAL*AAIALA
Trigger: CGCAAGGGCTATAGCTGCCCAGAGTGCGCTCGTGTC...ATGTAGACCAAAGTTGTTGCCCCTCTGGGCCTGGGTGTCAGTTGGAACTGGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069324.7
CDS-3UTR CCA 90 bp AGCCCAGTTCCAACTGACACCCAGGCCCAGAGGGGCAACAACTTTGGTCTACATCGGTGCCGCGACAGGTaGCTGGATCGCTTGAAAGCT +
Preference number: 4 (lower is better)
Translates to: SPVPTDTQAQRGNNFGLHRCRDR*LDRLKA
Trigger: AGCTTTCAAGCGATCCAGCCACCTGTCGCGGCACCG...ATGTAGACCAAAGTTGTTGCCCCTCTGGGCCTGGGTGTCAGTTGGAACTGGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069324.7
CDS-3UTR TCA 90 bp CGTAACGTTTGCAAAGGCTTACACAGCACAGCCGGACTGAAGCCCAGTTCCAACGGTGGCTGGATCGCTTaGAAGCTTTGCCACAAGCAC +
Preference number: 4 (lower is better)
Translates to: RNVCKGLHSTAGLKPSSNGGWIA*KLCHKH
Trigger: GTGCTTGTGGCAAAGCTTTCAAGCGATCCAGCCACC...GTTGGAACTGGGCTTCAGTCCGGCTGTGCTGTGTAAGCCTTTGCAAACGTTACG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069324.7
3UTR CAA 72 bp TTCCAACTGACACCCAGGCCCAGAGGGGCAACAACTTaGGTCTACATCACACAGCTAGACGGGAGAAAATAT +
Preference number: 4 (lower is better)
Translates to: FQLTPRPRGATT*VYITQLDGRKY
Trigger: ATATTTTCTCCCGTCTAGCTGTGTGATGTAGACCAAAGTTGTTGCCCCTCTGGGCCTGGGTGTCAGTTGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069324.7
CDS GCA 90 bp GAGGGCTCGCAAAGACACGAGCGCACTCTGGGCAGCTATAGCCCTTaGGAGGACCTGGCTCTCCCGGGGTCGCCTCGCGCTGCGGCGGGC +
Preference number: 5 (lower is better)
Translates to: EGSQRHERTLGSYSP*EDLALPGSPRAAAG
Trigger: GCCCGCCGCAGCGCGAGGCGACCCCGGGAGAGCCAGGTCCTCGCAAGGGCTATAGCTGCCCAGAGTGCGCTCGTGTCTTTGCGAGCCCTC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069324.7
ENSMUST00000208570.2
CDS CCA 90 bp AAAGACACGAGCGCACTCTGGGCAGCTATAGCCCTTGCGAGGACCTaGCTCTCCCGGGGTCGCCTCGCGCTGCGGCGGGCCCCGAGGTTC +
Preference number: 5 (lower is better)
Translates to: KDTSALWAAIALART*LSRGRLALRRAPRF
Trigger: GAACCTCGGGGCCCGCCGCAGCGCGAGGCGACCCCGGGAGAGCCAGGTCCTCGCAAGGGCTATAGCTGCCCAGAGTGCGCTCGTGTCTTT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069324.7
ENSMUST00000208570.2
CDS CCA 90 bp GTGGCTCTGCAGCCGCAGAGGGCTCGCAAAGACACGAGCGCACTCTaGGCAGCTATAGCCCTTGCGAGGACCTGGCTCTCCCGGGGTCGC +
Preference number: 5 (lower is better)
Translates to: VALQPQRARKDTSAL*AAIALARTWLSRGR
Trigger: GCGACCCCGGGAGAGCCAGGTCCTCGCAAGGGCTATAGCTGCCCAGAGTGCGCTCGTGTCTTTGCGAGCCCTCTGCGGCTGCAGAGCCAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069324.7
ENSMUST00000208570.2
CDS CCA 90 bp GGTGGACCAGCGCGCGCACGGTGGGTGGCGCGGTGCCGCGACAGGTaGCTGGATCGCTTGAAAGCTTTGCCACAAGCACCACAAGTAAAG +
Preference number: 5 (lower is better)
Translates to: GGPARARWVARCRDR*LDRLKALPQAPQVK
Trigger: CTTTACTTGTGGTGCTTGTGGCAAAGCTTTCAAGCGATCCAGCCACCTGTCGCGGCACCGCGCCACCCACCGTGCGCGCGCTGGTCCACC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069324.7
ENSMUST00000208570.2
CDS GCA 90 bp CCACAAGTAAAGGGCTTGAGGTCCGAGTGCGACACACGGTGGCTCTaGAGCCGCAGAGGGCTCGCAAAGACACGAGCGCACTCTGGGCAG +
Preference number: 5 (lower is better)
Translates to: PQVKGLRSECDTRWL*SRRGLAKTRAHSGQ
Trigger: CTGCCCAGAGTGCGCTCGTGTCTTTGCGAGCCCTCTGCGGCTGCAGAGCCACCGTGTGTCGCACTCGGACCTCAAGCCCTTTACTTGTGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069324.7
ENSMUST00000208570.2
CDS CCA 90 bp CAAGCACCACAAGTAAAGGGCTTGAGGTCCGAGTGCGACACACGGTaGCTCTGCAGCCGCAGAGGGCTCGCAAAGACACGAGCGCACTCT +
Preference number: 5 (lower is better)
Translates to: QAPQVKGLRSECDTR*LCSRRGLAKTRAHS
Trigger: AGAGTGCGCTCGTGTCTTTGCGAGCCCTCTGCGGCTGCAGAGCCACCGTGTGTCGCACTCGGACCTCAAGCCCTTTACTTGTGGTGCTTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069324.7
ENSMUST00000208570.2
CDS GCA 90 bp AAAGCTTTGCCACAAGCACCACAAGTAAAGGGCTTGAGGTCCGAGTaGGACACACGGTGGCTCTGCAGCCGCAGAGGGCTCGCAAAGACA +
Preference number: 5 (lower is better)
Translates to: KALPQAPQVKGLRSE*DTRWLCSRRGLAKT
Trigger: TGTCTTTGCGAGCCCTCTGCGGCTGCAGAGCCACCGTGTGTCGCACTCGGACCTCAAGCCCTTTACTTGTGGTGCTTGTGGCAAAGCTTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069324.7
ENSMUST00000208570.2
CDS-3UTR CAA 90 bp CTTACACAGCACAGCCGGACTGAAGCCCAGTTCCAACTGACACCCAGGCCCAGAAGGTGGCTGGATCGCTaGAAAGCTTTGCCACAAGCA +
Preference number: 5 (lower is better)
Translates to: LTQHSRTEAQFQLTPRPRRWLDR*KALPQA
Trigger: TGCTTGTGGCAAAGCTTTCAAGCGATCCAGCCACCT...TCTGGGCCTGGGTGTCAGTTGGAACTGGGCTTCAGTCCGGCTGTGCTGTGTAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069324.7
CDS-3UTR CAA 90 bp CGTAACGTTTGCAAAGGCTTACACAGCACAGCCGGACTGAAGCCCAGTTCCAACCCACAAGTAAAGGGCTaGAGGTCCGAGTGCGACACA +
Preference number: 5 (lower is better)
Translates to: RNVCKGLHSTAGLKPSSNPQVKG*RSECDT
Trigger: TGTGTCGCACTCGGACCTCAAGCCCTTTACTTGTGG...GTTGGAACTGGGCTTCAGTCCGGCTGTGCTGTGTAAGCCTTTGCAAACGTTACG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069324.7
CDS CCA 72 bp AGCGCACTCTGGGCAGCTATAGCCCTTGCGAGGACCTaGCTCTCCCGGGGTCGCCTCGCGCTGCGGCGGGCC +
Preference number: 6 (lower is better)
Translates to: SALWAAIALART*LSRGRLALRRA
Trigger: GGCCCGCCGCAGCGCGAGGCGACCCCGGGAGAGCCAGGTCCTCGCAAGGGCTATAGCTGCCCAGAGTGCGCT
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069324.7
ENSMUST00000208570.2
CDS GCA 72 bp CAAAGACACGAGCGCACTCTGGGCAGCTATAGCCCTTaGGAGGACCTGGCTCTCCCGGGGTCGCCTCGCGCT +
Preference number: 6 (lower is better)
Translates to: QRHERTLGSYSP*EDLALPGSPRA
Trigger: AGCGCGAGGCGACCCCGGGAGAGCCAGGTCCTCGCAAGGGCTATAGCTGCCCAGAGTGCGCTCGTGTCTTTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069324.7
ENSMUST00000208570.2
CDS GCA 72 bp AAGGGCTTGAGGTCCGAGTGCGACACACGGTGGCTCTaGAGCCGCAGAGGGCTCGCAAAGACACGAGCGCAC +
Preference number: 6 (lower is better)
Translates to: KGLRSECDTRWL*SRRGLAKTRAH
Trigger: GTGCGCTCGTGTCTTTGCGAGCCCTCTGCGGCTGCAGAGCCACCGTGTGTCGCACTCGGACCTCAAGCCCTT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069324.7
ENSMUST00000208570.2
CDS CCA 72 bp CAGCCGCAGAGGGCTCGCAAAGACACGAGCGCACTCTaGGCAGCTATAGCCCTTGCGAGGACCTGGCTCTCC +
Preference number: 6 (lower is better)
Translates to: QPQRARKDTSAL*AAIALARTWLS
Trigger: GGAGAGCCAGGTCCTCGCAAGGGCTATAGCTGCCCAGAGTGCGCTCGTGTCTTTGCGAGCCCTCTGCGGCTG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069324.7
ENSMUST00000208570.2
CDS GCA 72 bp CCACAAGCACCACAAGTAAAGGGCTTGAGGTCCGAGTaGGACACACGGTGGCTCTGCAGCCGCAGAGGGCTC +
Preference number: 6 (lower is better)
Translates to: PQAPQVKGLRSE*DTRWLCSRRGL
Trigger: GAGCCCTCTGCGGCTGCAGAGCCACCGTGTGTCGCACTCGGACCTCAAGCCCTTTACTTGTGGTGCTTGTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069324.7
ENSMUST00000208570.2
CDS CCA 72 bp CAAGTAAAGGGCTTGAGGTCCGAGTGCGACACACGGTaGCTCTGCAGCCGCAGAGGGCTCGCAAAGACACGA +
Preference number: 6 (lower is better)
Translates to: QVKGLRSECDTR*LCSRRGLAKTR
Trigger: TCGTGTCTTTGCGAGCCCTCTGCGGCTGCAGAGCCACCGTGTGTCGCACTCGGACCTCAAGCCCTTTACTTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069324.7
ENSMUST00000208570.2
CDS CAA 90 bp CTGGATCGCTTGAAAGCTTTGCCACAAGCACCACAAGTAAAGGGCTaGAGGTCCGAGTGCGACACACGGTGGCTCTGCAGCCGCAGAGGG +
Preference number: 6 (lower is better)
Translates to: LDRLKALPQAPQVKG*RSECDTRWLCSRRG
Trigger: CCCTCTGCGGCTGCAGAGCCACCGTGTGTCGCACTCGGACCTCAAGCCCTTTACTTGTGGTGCTTGTGGCAAAGCTTTCAAGCGATCCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069324.7
ENSMUST00000208570.2
CDS TCA 72 bp TGGAGCGGCAGCACCGTCTCCACCCACAAAGTATCCTaGCATCTTCGGTTTCTCTCTCCATCGCCGCCACCA +
Preference number: 6 (lower is better)
Translates to: WSGSTVSTHKVS*HLRFLSPSPPP
Trigger: TGGTGGCGGCGATGGAGAGAGAAACCGAAGATGTCAGGATACTTTGTGGGTGGAGACGGTGCTGCCGCTCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208570.2
CDS CAA 72 bp TTGAAAGCTTTGCCACAAGCACCACAAGTAAAGGGCTaGAGGTCCGAGTGCGACACACGGTGGCTCTGCAGC +
Preference number: 6 (lower is better)
Translates to: LKALPQAPQVKG*RSECDTRWLCS
Trigger: GCTGCAGAGCCACCGTGTGTCGCACTCGGACCTCAAGCCCTTTACTTGTGGTGCTTGTGGCAAAGCTTTCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069324.7
ENSMUST00000208570.2
CDS CAA 90 bp AGTATCCTGACATCTTCGGTTTCTCTCTCCATCGCCGCCACCACCTaGGAGCATCTTCCAACTCGCAGTCATAGACCTTCTGGTTTCTTG +
Preference number: 6 (lower is better)
Translates to: SILTSSVSLSIAATT*EHLPTRSHRPSGFL
Trigger: CAAGAAACCAGAAGGTCTATGACTGCGAGTTGGAAGATGCTCCAAGGTGGTGGCGGCGATGGAGAGAGAAACCGAAGATGTCAGGATACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208570.2