Pregenerated sensors for ZFP58 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000071291Ensembl transcript IDs: ENSMUST00000076123.12, ENSMUST00000091523.9, ENSMUST00000163534.2, ENSMUST00000171518.8
Found 37 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGCAAGTTTCTCTGCAGAATGAACGTTATTGATGGTAGAAAGTGTTaGCTTCATGTTAAACCACTCAGCATTCCTCACAGGCATATGGCT | + |
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Preference number: 1 (lower is better) Translates to: GKFLCRMNVIDGRKC*LHVKPLSIPHRHMA Trigger: AGCCATATGCCTGTGAGGAATGCTGAGTGGTTTAACATGAAGTCAACACTTTCTACCATCAATAACGTTCATTCTGCAGAGAAACTTGCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076123.12 ENSMUST00000171518.8 |
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| 3UTR TCA 90 bp | AAAGCCTGTCACTTCCTCCACAGTTGGGCAAGTTTCTCTGCAGAATaGACGTTATTGATGGTAGAAAGTGTTGACTTCATGTTAAACCAC | + |
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Preference number: 1 (lower is better) Translates to: KACHFLHSWASFSAE*TLLMVESVDFMLNH Trigger: GTGGTTTAACATGAAGTCAACACTTTCTACCATCAATAACGTTCATTCTGCAGAGAAACTTGCCCAACTGTGGAGGAAGTGACAGGCTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076123.12 ENSMUST00000171518.8 |
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| 3UTR-3UTR TCA 90 bp | CCATCCTTACGTAACCCAGGAACACTTCCCCAAGGTGGCGATGCTTGTCCTGTCGGCTTCTCTACTCAATaGTTTCCTTTGTCTTGGGCA | + |
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Preference number: 2 (lower is better) Translates to: PSLRNPGTLPQGGDACPVGFSTQ*FPLSWA Trigger: TGCCCAAGACAAAGGAAATCATTGAGTAGAGAAGCC...GACAGGACAAGCATCGCCACCTTGGGGAAGTGTTCCTGGGTTACGTAAGGATGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076123.12 ENSMUST00000171518.8 |
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| 3UTR-3UTR CCA 90 bp | CCTTACGTAACCCAGGAACACTTCCCCAAGGTGGCGATGCTTGTCCTGTCTGGATTCCTCACAGGCATATaGCTTCTCTACTCAATGATT | + |
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Preference number: 2 (lower is better) Translates to: PYVTQEHFPKVAMLVLSGFLTGI*LLYSMI Trigger: AATCATTGAGTAGAGAAGCCATATGCCTGTGAGGAA...TCCAGACAGGACAAGCATCGCCACCTTGGGGAAGTGTTCCTGGGTTACGTAAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076123.12 ENSMUST00000171518.8 |
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| 3UTR-3UTR CCA 90 bp | CCATCCTTACGTAACCCAGGAACACTTCCCCAAGGTGGCGATGCTTGTCCTGTCTTCCTCACAGGCATATaGCTTCTCTACTCAATGATT | + |
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Preference number: 2 (lower is better) Translates to: PSLRNPGTLPQGGDACPVFLTGI*LLYSMI Trigger: AATCATTGAGTAGAGAAGCCATATGCCTGTGAGGAA...GACAGGACAAGCATCGCCACCTTGGGGAAGTGTTCCTGGGTTACGTAAGGATGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076123.12 ENSMUST00000171518.8 |
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| 3UTR-3UTR TCA 90 bp | TCCTTACGTAACCCAGGAACACTTCCCCAAGGTGGCGATGCTTGTCCTGTCTGGAGGTTGAATCAGGATTaGATGATAACTAATGCCTCT | + |
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Preference number: 2 (lower is better) Translates to: SLRNPGTLPQGGDACPVWRLNQD*MITNAS Trigger: AGAGGCATTAGTTATCATTCAATCCTGATTCAACCT...CCAGACAGGACAAGCATCGCCACCTTGGGGAAGTGTTCCTGGGTTACGTAAGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076123.12 ENSMUST00000171518.8 |
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| 3UTR-3UTR TCA 90 bp | TTATTTCAACATAAATGTCGCTGTCTCTTTTCCAGGGAAGTTAGGGCAGCAAGTGCCCATAAGGCACTATaGTCCAGGAAAGCACGCATT | + |
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Preference number: 2 (lower is better) Translates to: LFQHKCRCLFSREVRAASAHKAL*SRKARI Trigger: AATGCGTGCTTTCCTGGATCATAGTGCCTTATGGGC...ACTTGCTGCCCTAACTTCCCTGGAAAAGAGACAGCGACATTTATGTTGAAATAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076123.12 ENSMUST00000171518.8 |
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| 3UTR-3UTR TCA 90 bp | CATGTTAAACCACTCAGCATTCCTCACAGGCATATGGCTTCTCTACTCAATGATGTCTTGGGCAAGGTCTaGATATTTTGCAAGATTTTT | + |
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Preference number: 2 (lower is better) Translates to: HVKPLSIPHRHMASLLNDVLGKV*IFCKIF Trigger: AAAAATCTTGCAAAATATTCAGACCTTGCCCAAGAC...ATCATTGAGTAGAGAAGCCATATGCCTGTGAGGAATGCTGAGTGGTTTAACATG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076123.12 ENSMUST00000171518.8 |
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| 3UTR-3UTR TCA 90 bp | TTATTTCAACATAAATGTCGCTGTCTCTTTTCCAGGGAAGTTAGGGCAGCAAGTGTCTTGGGCAAGGTCTaGATATTTTGCAAGATTTTT | + |
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Preference number: 2 (lower is better) Translates to: LFQHKCRCLFSREVRAASVLGKV*IFCKIF Trigger: AAAAATCTTGCAAAATATTCAGACCTTGCCCAAGAC...ACTTGCTGCCCTAACTTCCCTGGAAAAGAGACAGCGACATTTATGTTGAAATAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076123.12 ENSMUST00000171518.8 |
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| 3UTR-3UTR CAA 90 bp | CCTTACGTAACCCAGGAACACTTCCCCAAGGTGGCGATGCTTGTCCTGTCTGGATCACTTCCTCCACAGTaGGGCAAGTTTCTCTGCAGA | + |
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Preference number: 3 (lower is better) Translates to: PYVTQEHFPKVAMLVLSGSLPPQ*GKFLCR Trigger: TCTGCAGAGAAACTTGCCCAACTGTGGAGGAAGTGA...TCCAGACAGGACAAGCATCGCCACCTTGGGGAAGTGTTCCTGGGTTACGTAAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076123.12 ENSMUST00000171518.8 |
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| 3UTR GCA 72 bp | GAAGCAGAAGCCATGCTTCCTGACGTATTAGTCTCCTaGCCACCCCATCCTTACGTAACCCAGGAACACTTC | + |
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Preference number: 3 (lower is better) Translates to: EAEAMLPDVLVS*PPHPYVTQEHF Trigger: GAAGTGTTCCTGGGTTACGTAAGGATGGGGTGGGCAGGAGACTAATACGTCAGGAAGCATGGCTTCTGCTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076123.12 ENSMUST00000171518.8 |
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| 3UTR-3UTR CAA 90 bp | CATCCTTACGTAACCCAGGAACACTTCCCCAAGGTGGCGATGCTTGTCCTGTCTTCACTTCCTCCACAGTaGGGCAAGTTTCTCTGCAGA | + |
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Preference number: 3 (lower is better) Translates to: HPYVTQEHFPKVAMLVLSSLPPQ*GKFLCR Trigger: TCTGCAGAGAAACTTGCCCAACTGTGGAGGAAGTGA...AGACAGGACAAGCATCGCCACCTTGGGGAAGTGTTCCTGGGTTACGTAAGGATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076123.12 ENSMUST00000171518.8 |
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| 3UTR-3UTR CAA 90 bp | TTATTTCAACATAAATGTCGCTGTCTCTTTTCCAGGGAAGTTAGGGCAGCAAGTCCAAGGTGGCGATGCTaGTCCTGTCTGGACACTACT | + |
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Preference number: 3 (lower is better) Translates to: LFQHKCRCLFSREVRAASPRWRC*SCLDTT Trigger: AGTAGTGTCCAGACAGGACAAGCATCGCCACCTTGG...ACTTGCTGCCCTAACTTCCCTGGAAAAGAGACAGCGACATTTATGTTGAAATAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076123.12 ENSMUST00000171518.8 |
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| 3UTR CCA 72 bp | TTCATGTTAAACCACTCAGCATTCCTCACAGGCATATaGCTTCTCTACTCAATGATTTCCTTTGTCTTGGGC | + |
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Preference number: 3 (lower is better) Translates to: FMLNHSAFLTGI*LLYSMISFVLG Trigger: GCCCAAGACAAAGGAAATCATTGAGTAGAGAAGCCATATGCCTGTGAGGAATGCTGAGTGGTTTAACATGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076123.12 ENSMUST00000171518.8 |
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| 3UTR TCA 72 bp | CTCTGCAGAATGAACGTTATTGATGGTAGAAAGTGTTaGCTTCATGTTAAACCACTCAGCATTCCTCACAGG | + |
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Preference number: 3 (lower is better) Translates to: LCRMNVIDGRKC*LHVKPLSIPHR Trigger: CCTGTGAGGAATGCTGAGTGGTTTAACATGAAGTCAACACTTTCTACCATCAATAACGTTCATTCTGCAGAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076123.12 ENSMUST00000171518.8 |
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| 3UTR TCA 72 bp | TCTGTCAGGAATGAATTATTGAGGTTGAATCAGGATTaGATGATAACTAATGCCTCTACTACATCCTTCAAA | + |
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Preference number: 3 (lower is better) Translates to: SVRNELLRLNQD*MITNASTTSFK Trigger: TTTGAAGGATGTAGTAGAGGCATTAGTTATCATTCAATCCTGATTCAACCTCAATAATTCATTCCTGACAGA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076123.12 ENSMUST00000171518.8 |
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| CDS-3UTR TCA 90 bp | TCCTTACGTAACCCAGGAACACTTCCCCAAGGTGGCGATGCTTGTCCTGTCTGGCGAATTCTCTGGTGCTaGGTAAGCAGTGACTTGCAA | + |
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Preference number: 4 (lower is better) Translates to: SLRNPGTLPQGGDACPVWRILWC*VSSDLQ Trigger: TTGCAAGTCACTGCTTACTCAGCACCAGAGAATTCG...CCAGACAGGACAAGCATCGCCACCTTGGGGAAGTGTTCCTGGGTTACGTAAGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076123.12 ENSMUST00000171518.8 |
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| CDS-3UTR GCA 90 bp | TCCTTACGTAACCCAGGAACACTTCCCCAAGGTGGCGATGCTTGTCCTGTCTGGATGACGCTTAAGGAATaGGGAAGAGTAAAATGCCCT | + |
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Preference number: 4 (lower is better) Translates to: SLRNPGTLPQGGDACPVWMTLKE*GRVKCP Trigger: AGGGCATTTTACTCTTCCGCATTCCTTAAGCGTCAT...CCAGACAGGACAAGCATCGCCACCTTGGGGAAGTGTTCCTGGGTTACGTAAGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076123.12 ENSMUST00000171518.8 |
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| CDS-3UTR CCA 90 bp | TCCTTACGTAACCCAGGAACACTTCCCCAAGGTGGCGATGCTTGTCCTGTCTGGGCATTCTCTCTCTTCTaGAGAAAAATCAATGGCCAC | + |
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Preference number: 4 (lower is better) Translates to: SLRNPGTLPQGGDACPVWAFSLF*RKINGH Trigger: GTGGCCATTGATTTTTCTCCAGAAGAGAGAGAATGC...CCAGACAGGACAAGCATCGCCACCTTGGGGAAGTGTTCCTGGGTTACGTAAGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000076123.12 ENSMUST00000171518.8 |
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| CDS-3UTR GCA 90 bp | CATGTTAAACCACTCAGCATTCCTCACAGGCATATGGCTTCTCTACTCAATGATACGGTTTTTCCTGGGTaGACAGCGGCTGCTGCTTGT | + |
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Preference number: 4 (lower is better) Translates to: HVKPLSIPHRHMASLLNDTVFPG*TAAAAC Trigger: ACAAGCAGCAGCCGCTGTGCACCCAGGAAAAACCGT...ATCATTGAGTAGAGAAGCCATATGCCTGTGAGGAATGCTGAGTGGTTTAACATG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000076123.12 ENSMUST00000171518.8 |
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| CDS-3UTR GCA 90 bp | TTATTTCAACATAAATGTCGCTGTCTCTTTTCCAGGGAAGTTAGGGCAGCAAGTACGGTTTTTCCTGGGTaGACAGCGGCTGCTGCTTGT | + |
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Preference number: 4 (lower is better) Translates to: LFQHKCRCLFSREVRAASTVFPG*TAAAAC Trigger: ACAAGCAGCAGCCGCTGTGCACCCAGGAAAAACCGT...ACTTGCTGCCCTAACTTCCCTGGAAAAGAGACAGCGACATTTATGTTGAAATAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000076123.12 ENSMUST00000171518.8 |
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| CDS-3UTR TCA 90 bp | TTCCTCACAGGCATATGGCTTCTCTACTCAATGATTTCCTTTGTCTTGGGCAAGCGAATTCTCTGGTGCTaGGTAAGCAGTGACTTGCAA | + |
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Preference number: 4 (lower is better) Translates to: FLTGIWLLYSMISFVLGKRILWC*VSSDLQ Trigger: TTGCAAGTCACTGCTTACTCAGCACCAGAGAATTCG...CTTGCCCAAGACAAAGGAAATCATTGAGTAGAGAAGCCATATGCCTGTGAGGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076123.12 ENSMUST00000171518.8 |
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| CDS-3UTR TCA 90 bp | AGGTTTGAAGAAACACTAAAAGCCTGTCACTTCCTCCACAGTTGGGCAAGTTTCGTGTGTAGAAAGTTTTaGGCGAATACGAAAGGCCTT | + |
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Preference number: 4 (lower is better) Translates to: RFEETLKACHFLHSWASFVCRKF*ANTKGL Trigger: AAGGCCTTTCGTATTCGCTCAAAACTTTCTACACAC...GAAACTTGCCCAACTGTGGAGGAAGTGACAGGCTTTTAGTGTTTCTTCAAACCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076123.12 ENSMUST00000171518.8 |
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| CDS-3UTR CCA 90 bp | CATGTTAAACCACTCAGCATTCCTCACAGGCATATGGCTTCTCTACTCAATGATGCATTCTCTCTCTTCTaGAGAAAAATCAATGGCCAC | + |
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Preference number: 4 (lower is better) Translates to: HVKPLSIPHRHMASLLNDAFSLF*RKINGH Trigger: GTGGCCATTGATTTTTCTCCAGAAGAGAGAGAATGC...ATCATTGAGTAGAGAAGCCATATGCCTGTGAGGAATGCTGAGTGGTTTAACATG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000076123.12 ENSMUST00000171518.8 |
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| CDS-3UTR TCA 90 bp | TTATTTCAACATAAATGTCGCTGTCTCTTTTCCAGGGAAGTTAGGGCAGCAAGTGTGTGTAGAAAGTTTTaGGCGAATACGAAAGGCCTT | + |
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Preference number: 4 (lower is better) Translates to: LFQHKCRCLFSREVRAASVCRKF*ANTKGL Trigger: AAGGCCTTTCGTATTCGCTCAAAACTTTCTACACAC...ACTTGCTGCCCTAACTTCCCTGGAAAAGAGACAGCGACATTTATGTTGAAATAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076123.12 ENSMUST00000171518.8 |
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| CDS-3UTR GCA 90 bp | TTATTTCAACATAAATGTCGCTGTCTCTTTTCCAGGGAAGTTAGGGCAGCAAGTATGACGCTTAAGGAATaGGGAAGAGTAAAATGCCCT | + |
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Preference number: 4 (lower is better) Translates to: LFQHKCRCLFSREVRAASMTLKE*GRVKCP Trigger: AGGGCATTTTACTCTTCCGCATTCCTTAAGCGTCAT...ACTTGCTGCCCTAACTTCCCTGGAAAAGAGACAGCGACATTTATGTTGAAATAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076123.12 ENSMUST00000171518.8 |
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| CDS-3UTR CAA 90 bp | CCTTACGTAACCCAGGAACACTTCCCCAAGGTGGCGATGCTTGTCCTGTCTGGACCAAGGCCCTTGTCTTaGCTCCAGAAATGTCACCAG | + |
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Preference number: 5 (lower is better) Translates to: PYVTQEHFPKVAMLVLSGPRPLS*LQKCHQ Trigger: CTGGTGACATTTCTGGAGCAAAGACAAGGGCCTTGG...TCCAGACAGGACAAGCATCGCCACCTTGGGGAAGTGTTCCTGGGTTACGTAAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076123.12 ENSMUST00000171518.8 |
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| CDS GCA 90 bp | AAGGCCTTGCTGAAATCTTTACATTTGTTGACGGTTTTTCCTGGGTaGACAGCGGCTGCTGCTTGTCTCTTCACGTCCCAAGGCCCTTGT | + |
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Preference number: 5 (lower is better) Translates to: KALLKSLHLLTVFPG*TAAAACLFTSQGPC Trigger: ACAAGGGCCTTGGGACGTGAAGAGACAAGCAGCAGCCGCTGTGCACCCAGGAAAAACCGTCAACAAATGTAAAGATTTCAGCAAGGCCTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000076123.12 ENSMUST00000091523.9 ENSMUST00000163534.2 ENSMUST00000171518.8 |
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| CDS-3UTR CAA 90 bp | GTAACCCAGGAACACTTCCCCAAGGTGGCGATGCTTGTCCTGTCTGGACACTACAAAGAACAAAACCTTTaGCCACATTCTCCACACTTG | + |
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Preference number: 5 (lower is better) Translates to: VTQEHFPKVAMLVLSGHYKEQNL*PHSPHL Trigger: CAAGTGTGGAGAATGTGGCAAAAGGTTTTGTTCTTT...GTAGTGTCCAGACAGGACAAGCATCGCCACCTTGGGGAAGTGTTCCTGGGTTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076123.12 ENSMUST00000171518.8 |
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| CDS-3UTR CAA 90 bp | GTAACCCAGGAACACTTCCCCAAGGTGGCGATGCTTGTCCTGTCTGGACACTACTCCAGAATGAAATCTTaGGTGATATTGAAGGTGTGG | + |
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Preference number: 5 (lower is better) Translates to: VTQEHFPKVAMLVLSGHYSRMKS*VILKVW Trigger: CCACACCTTCAATATCACCAAAGATTTCATTCTGGA...GTAGTGTCCAGACAGGACAAGCATCGCCACCTTGGGGAAGTGTTCCTGGGTTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076123.12 ENSMUST00000171518.8 |
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| CDS-3UTR CAA 90 bp | CATCCTTACGTAACCCAGGAACACTTCCCCAAGGTGGCGATGCTTGTCCTGTCTTTCAGAATGAATTCTTaGATGACGCTTAAGGAATGC | + |
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Preference number: 5 (lower is better) Translates to: HPYVTQEHFPKVAMLVLSFRMNS*MTLKEC Trigger: GCATTCCTTAAGCGTCATCAAAGAATTCATTCTGAA...AGACAGGACAAGCATCGCCACCTTGGGGAAGTGTTCCTGGGTTACGTAAGGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076123.12 ENSMUST00000171518.8 |
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| CDS-3UTR CAA 90 bp | TTATTTCAACATAAATGTCGCTGTCTCTTTTCCAGGGAAGTTAGGGCAGCAAGTCCAAGGCCCTTGTCTTaGCTCCAGAAATGTCACCAG | + |
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Preference number: 5 (lower is better) Translates to: LFQHKCRCLFSREVRAASPRPLS*LQKCHQ Trigger: CTGGTGACATTTCTGGAGCAAAGACAAGGGCCTTGG...ACTTGCTGCCCTAACTTCCCTGGAAAAGAGACAGCGACATTTATGTTGAAATAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076123.12 ENSMUST00000171518.8 |
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| CDS-3UTR CAA 90 bp | CATGTTAAACCACTCAGCATTCCTCACAGGCATATGGCTTCTCTACTCAATGATTCCAGAATGAAATCTTaGGTGATATTGAAGGTGTGG | + |
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Preference number: 5 (lower is better) Translates to: HVKPLSIPHRHMASLLNDSRMKS*VILKVW Trigger: CCACACCTTCAATATCACCAAAGATTTCATTCTGGA...ATCATTGAGTAGAGAAGCCATATGCCTGTGAGGAATGCTGAGTGGTTTAACATG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076123.12 ENSMUST00000171518.8 |
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| CDS-3UTR CAA 90 bp | TTATTTCAACATAAATGTCGCTGTCTCTTTTCCAGGGAAGTTAGGGCAGCAAGTAAAGAACAAAACCTTTaGCCACATTCTCCACACTTG | + |
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Preference number: 5 (lower is better) Translates to: LFQHKCRCLFSREVRAASKEQNL*PHSPHL Trigger: CAAGTGTGGAGAATGTGGCAAAAGGTTTTGTTCTTT...ACTTGCTGCCCTAACTTCCCTGGAAAAGAGACAGCGACATTTATGTTGAAATAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076123.12 ENSMUST00000171518.8 |
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| CDS CAA 72 bp | GTTGACGGTTTTTCCTGGGTGCACAGCGGCTGCTGCTaGTCTCTTCACGTCCCAAGGCCCTTGTCTTTGCTC | + |
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Preference number: 6 (lower is better) Translates to: VDGFSWVHSGCC*SLHVPRPLSLL Trigger: GAGCAAAGACAAGGGCCTTGGGACGTGAAGAGACAAGCAGCAGCCGCTGTGCACCCAGGAAAAACCGTCAAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000076123.12 ENSMUST00000091523.9 ENSMUST00000163534.2 ENSMUST00000171518.8 |
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| CDS GCA 72 bp | TTTGTTGACGGTTTTTCCTGGGTGCACAGCGGCTGCTaGTTGTCTCTTCACGTCCCAAGGCCCTTGTCTTTG | + |
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Preference number: 6 (lower is better) Translates to: FVDGFSWVHSGC*LSLHVPRPLSL Trigger: CAAAGACAAGGGCCTTGGGACGTGAAGAGACAAGCAGCAGCCGCTGTGCACCCAGGAAAAACCGTCAACAAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000076123.12 ENSMUST00000091523.9 ENSMUST00000163534.2 ENSMUST00000171518.8 |
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| CDS GCA 72 bp | TCTTTGATGACGCTTAAGGAATGCGGAAGAGTAAAATaGCCTGTCGCAGTCTTTACACTTACAGGGTTTCTT | + |
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Preference number: 6 (lower is better) Translates to: SLMTLKECGRVK*PVAVFTLTGFL Trigger: AAGAAACCCTGTAAGTGTAAAGACTGCGACAGGGCATTTTACTCTTCCGCATTCCTTAAGCGTCATCAAAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076123.12 ENSMUST00000171518.8 |
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