RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZFP574 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000045252

Ensembl transcript IDs: ENSMUST00000053410.11, ENSMUST00000179556.2

Found 302 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTCAGGCTTTGGGGACCTCTAGTGGCAAGACACATTACCTTCATCTaGCACAAGAGGCTGGTTTCAAAGATCCATGCCCCAGACTCAGGC +
Preference number: 1 (lower is better)
Translates to: LRLWGPLVARHITFI*HKRLVSKIHAPDSG
Trigger: GCCTGAGTCTGGGGCATGGATCTTTGAAACCAGCCTCTTGTGGCAGATGAAGGTAATGTGTCTTGCCACTAGAGGTCCCCAAAGCCTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
3UTR CCA 90 bp GTACAAGTCTGTCCTCAGGGATCCAGTGTGAGAAATACAGATGGATaGCCTCGCAGATGTGACCCACATCAGGCTGGAAATGGGATGGCC +
Preference number: 1 (lower is better)
Translates to: VQVCPQGSSVRNTDG*PRRCDPHQAGNGMA
Trigger: GGCCATCCCATTTCCAGCCTGATGTGGGTCACATCTGCGAGGCCATCCATCTGTATTTCTCACACTGGATCCCTGAGGACAGACTTGTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
3UTR GCA 90 bp ACACATTACCTTCATCTGCCACAAGAGGCTGGTTTCAAAGATCCATaGCCCAGACTCAGGCTGCCTTCTTCTCAATCCAGCAAACTGGAC +
Preference number: 1 (lower is better)
Translates to: THYLHLPQEAGFKDP*PRLRLPSSQSSKLD
Trigger: GTCCAGTTTGCTGGATTGAGAAGAAGGCAGCCTGAGTCTGGGGCATGGATCTTTGAAACCAGCCTCTTGTGGCAGATGAAGGTAATGTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
3UTR CCA 90 bp TCTTTATTGACTGCTTCATTTGGAGACCACCAAACAGGTGGAAAGTaGGAAGTGCCCTTTACATATCAAGGACTCCAGAGCAACCCCCTC +
Preference number: 1 (lower is better)
Translates to: SLLTASFGDHQTGGK*EVPFTYQGLQSNPL
Trigger: GAGGGGGTTGCTCTGGAGTCCTTGATATGTAAAGGGCACTTCCCACTTTCCACCTGTTTGGTGGTCTCCAAATGAAGCAGTCAATAAAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
3UTR CCA 90 bp ACCAACAAGCTCAAAGCCTGCTTAGGATATAGTGAGTCTGAGGCCTaGACAATCAGCAAACCTGACCTCAAAATTAGATATCGGGACACA +
Preference number: 1 (lower is better)
Translates to: TNKLKACLGYSESEA*TISKPDLKIRYRDT
Trigger: TGTGTCCCGATATCTAATTTTGAGGTCAGGTTTGCTGATTGTCCAGGCCTCAGACTCACTATATCCTAAGCAGGCTTTGAGCTTGTTGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
3UTR TCA 90 bp AAACCTGACCTCAAAATTAGATATCGGGACACAGCTTTGTGGTCCTaGGCTTGCTCAGCATGTGAGAGATCCAAGCAAATATGCAGTTCT +
Preference number: 1 (lower is better)
Translates to: KPDLKIRYRDTALWS*ACSACERSKQICSS
Trigger: AGAACTGCATATTTGCTTGGATCTCTCACATGCTGAGCAAGCTCAGGACCACAAAGCTGTGTCCCGATATCTAATTTTGAGGTCAGGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
3UTR CCA 90 bp AATTCAGTCTTTATTGACTGCTTCATTTGGAGACCACCAAACAGGTaGAAAGTGGGAAGTGCCCTTTACATATCAAGGACTCCAGAGCAA +
Preference number: 1 (lower is better)
Translates to: NSVFIDCFIWRPPNR*KVGSALYISRTPEQ
Trigger: TTGCTCTGGAGTCCTTGATATGTAAAGGGCACTTCCCACTTTCCACCTGTTTGGTGGTCTCCAAATGAAGCAGTCAATAAAGACTGAATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
3UTR CCA 90 bp CCATTTTCTTGTTGGGAAAGACCATGGGACAGTCAGCATGGAATATaGATGCTTAAATCAAAGGAGACCAGATTTGAATTTAAGCTCTGC +
Preference number: 1 (lower is better)
Translates to: PFSCWERPWDSQHGI*MLKSKETRFEFKLC
Trigger: GCAGAGCTTAAATTCAAATCTGGTCTCCTTTGATTTAAGCATCCATATTCCATGCTGACTGTCCCATGGTCTTTCCCAACAAGAAAATGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
3UTR-3UTR GCA 90 bp AGGACCAACAAGCTCAAAGCCTGCTTAGGATATAGTGAGTCTGAGGCCTGGACAGCCCCAGACTCAGGCTaGCTTCTTCTCAATCCAGCA +
Preference number: 2 (lower is better)
Translates to: RTNKLKACLGYSESEAWTAPDSG*LLLNPA
Trigger: TGCTGGATTGAGAAGAAGGCAGCCTGAGTCTGGGGC...TGTCCAGGCCTCAGACTCACTATATCCTAAGCAGGCTTTGAGCTTGTTGGTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
3UTR-3UTR GCA 90 bp TCAAGGGGCTGTGGCAGGAGGACCAACAAGCTCAAAGCCTGCTTAGGATATAGTGGTTTCAAAGATCCATaGCCCAGACTCAGGCTGCCT +
Preference number: 2 (lower is better)
Translates to: SRGCGRRTNKLKACLGYSGFKDP*PRLRLP
Trigger: AGGCAGCCTGAGTCTGGGGCATGGATCTTTGAAACC...ACTATATCCTAAGCAGGCTTTGAGCTTGTTGGTCCTCCTGCCACAGCCCCTTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
3UTR-3UTR CCA 90 bp GATATCGGGACACAGCTTTGTGGTCCTGAGCTTGCTCAGCATGTGAGAGATCCAGAACTCATAAGGTGGTaGAGAGGAGAGGGGTACACT +
Preference number: 2 (lower is better)
Translates to: DIGTQLCGPELAQHVRDPELIRW*RGEGYT
Trigger: AGTGTACCCCTCTCCTCTCCACCACCTTATGAGTTC...TGGATCTCTCACATGCTGAGCAAGCTCAGGACCACAAAGCTGTGTCCCGATATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
3UTR-3UTR CCA 90 bp GGCTGCCTTCTTCTCAATCCAGCAAACTGGACTACCTGCCAAGTTCTATCTGGGACAGAACTCATAAGGTaGTGGAGAGGAGAGGGGTAC +
Preference number: 2 (lower is better)
Translates to: GCLLLNPANWTTCQVLSGTELIR*WRGEGY
Trigger: GTACCCCTCTCCTCTCCACCACCTTATGAGTTCTGT...CCCAGATAGAACTTGGCAGGTAGTCCAGTTTGCTGGATTGAGAAGAAGGCAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
3UTR-3UTR CCA 90 bp ACTCAAAATAACTCAAGGGCACAGGCCTGTCATCCTAACTACTCAAGGGGCTGTGTTCCCCATTACGCCTaGTACAAGTCTGTCCTCAGG +
Preference number: 2 (lower is better)
Translates to: TQNNSRAQACHPNYSRGCVPHYA*YKSVLR
Trigger: CCTGAGGACAGACTTGTACCAGGCGTAATGGGGAAC...ACAGCCCCTTGAGTAGTTAGGATGACAGGCCTGTGCCCTTGAGTTATTTTGAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
3UTR-3UTR GCA 90 bp CTCAAAATAACTCAAGGGCACAGGCCTGTCATCCTAACTACTCAAGGGGCTGTGCCCAAAGCCACAGAGTaGTTCAAGATTTTCCTCAGG +
Preference number: 2 (lower is better)
Translates to: LKITQGHRPVILTTQGAVPKATE*FKIFLR
Trigger: CCTGAGGAAAATCTTGAAGCACTCTGTGGCTTTGGG...CACAGCCCCTTGAGTAGTTAGGATGACAGGCCTGTGCCCTTGAGTTATTTTGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
3UTR-3UTR CCA 90 bp ACTGCTTCATTTGGAGACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTTACAGAACTCATAAGGTGGTaGAGAGGAGAGGGGTACACT +
Preference number: 2 (lower is better)
Translates to: TASFGDHQTGGKWEVPFTELIRW*RGEGYT
Trigger: AGTGTACCCCTCTCCTCTCCACCACCTTATGAGTTC...TGTAAAGGGCACTTCCCACTTTCCACCTGTTTGGTGGTCTCCAAATGAAGCAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
3UTR-3UTR TCA 90 bp ACTCAAAATAACTCAAGGGCACAGGCCTGTCATCCTAACTACTCAAGGGGCTGTCAATTCAGTCTTTATTaGCTGCTTCATTTGGAGACC +
Preference number: 2 (lower is better)
Translates to: TQNNSRAQACHPNYSRGCQFSLY*LLHLET
Trigger: GGTCTCCAAATGAAGCAGTCAATAAAGACTGAATTG...ACAGCCCCTTGAGTAGTTAGGATGACAGGCCTGTGCCCTTGAGTTATTTTGAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
3UTR-3UTR CCA 90 bp TCTAGTGGCAAGACACATTACCTTCATCTGCCACAAGAGGCTGGTTTCAAAGATCAAACAGGTGGAAAGTaGGAAGTGCCCTTTACATAT +
Preference number: 2 (lower is better)
Translates to: SSGKTHYLHLPQEAGFKDQTGGK*EVPFTY
Trigger: ATATGTAAAGGGCACTTCCCACTTTCCACCTGTTTG...ATCTTTGAAACCAGCCTCTTGTGGCAGATGAAGGTAATGTGTCTTGCCACTAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
3UTR-3UTR CAA 90 bp GATATCGGGACACAGCTTTGTGGTCCTGAGCTTGCTCAGCATGTGAGAGATCCATGGCCGAGATACAGCTaGGGGTTGGGGGCATGGGGG +
Preference number: 3 (lower is better)
Translates to: DIGTQLCGPELAQHVRDPWPRYS*GLGAWG
Trigger: CCCCCATGCCCCCAACCCCAAGCTGTATCTCGGCCA...TGGATCTCTCACATGCTGAGCAAGCTCAGGACCACAAAGCTGTGTCCCGATATC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
3UTR TCA 72 bp CAGTGTGAGAAATACAGATGGATGGCCTCGCAGATGTaGCCCACATCAGGCTGGAAATGGGATGGCCAGGCT +
Preference number: 3 (lower is better)
Translates to: QCEKYRWMASQM*PTSGWKWDGQA
Trigger: AGCCTGGCCATCCCATTTCCAGCCTGATGTGGGTCACATCTGCGAGGCCATCCATCTGTATTTCTCACACTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
3UTR GCA 72 bp AGGGGCTGTGGCAGGAGGACCAACAAGCTCAAAGCCTaGTTAGGATATAGTGAGTCTGAGGCCTGGACAATC +
Preference number: 3 (lower is better)
Translates to: RGCGRRTNKLKA*LGYSESEAWTI
Trigger: GATTGTCCAGGCCTCAGACTCACTATATCCTAAGCAGGCTTTGAGCTTGTTGGTCCTCCTGCCACAGCCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
3UTR TCA 72 bp TACGCCTGGTACAAGTCTGTCCTCAGGGATCCAGTGTaGGAAATACAGATGGATGGCCTCGCAGATGTGACC +
Preference number: 3 (lower is better)
Translates to: YAWYKSVLRDPV*EIQMDGLADVT
Trigger: GGTCACATCTGCGAGGCCATCCATCTGTATTTCTCACACTGGATCCCTGAGGACAGACTTGTACCAGGCGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
3UTR GCA 72 bp GGCTGCCTTCTTCTCAATCCAGCAAACTGGACTACCTaGCAAGTTCTATCTGGGGTGCTAGGAATGCAGCCA +
Preference number: 3 (lower is better)
Translates to: GCLLLNPANWTT*QVLSGVLGMQP
Trigger: TGGCTGCATTCCTAGCACCCCAGATAGAACTTGGCAGGTAGTCCAGTTTGCTGGATTGAGAAGAAGGCAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
3UTR GCA 72 bp ACATCAGGCTGGAAATGGGATGGCCAGGCTGAGAAGTaGACCAATGTTTCTCTATGTGTTTGCACGCCCCAC +
Preference number: 3 (lower is better)
Translates to: TSGWKWDGQAEK*TNVSLCVCTPH
Trigger: GTGGGGCGTGCAAACACATAGAGAAACATTGGTGCACTTCTCAGCCTGGCCATCCCATTTCCAGCCTGATGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
3UTR CCA 72 bp CCAGACTCAGGCTGCCTTCTTCTCAATCCAGCAAACTaGACTACCTGCCAAGTTCTATCTGGGGTGCTAGGA +
Preference number: 3 (lower is better)
Translates to: PDSGCLLLNPAN*TTCQVLSGVLG
Trigger: TCCTAGCACCCCAGATAGAACTTGGCAGGTAGTCCAGTTTGCTGGATTGAGAAGAAGGCAGCCTGAGTCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
3UTR CCA 72 bp TGGCAAGACACATTACCTTCATCTGCCACAAGAGGCTaGTTTCAAAGATCCATGCCCCAGACTCAGGCTGCC +
Preference number: 3 (lower is better)
Translates to: WQDTLPSSATRG*FQRSMPQTQAA
Trigger: GGCAGCCTGAGTCTGGGGCATGGATCTTTGAAACCAGCCTCTTGTGGCAGATGAAGGTAATGTGTCTTGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
3UTR TCA 72 bp GCAGCCAGAAGTCAGCTCTATTGCAGCCTGGCCTCATaGTCCTCCGAATCATGTTATATAGCTAGGCCTGAC +
Preference number: 3 (lower is better)
Translates to: AARSQLYCSLAS*SSESCYIARPD
Trigger: GTCAGGCCTAGCTATATAACATGATTCGGAGGATCATGAGGCCAGGCTGCAATAGAGCTGACTTCTGGCTGC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
3UTR CCA 72 bp TGTCCTCAGGGATCCAGTGTGAGAAATACAGATGGATaGCCTCGCAGATGTGACCCACATCAGGCTGGAAAT +
Preference number: 3 (lower is better)
Translates to: CPQGSSVRNTDG*PRRCDPHQAGN
Trigger: ATTTCCAGCCTGATGTGGGTCACATCTGCGAGGCCATCCATCTGTATTTCTCACACTGGATCCCTGAGGACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
3UTR-3UTR CAA 90 bp TCTAGTGGCAAGACACATTACCTTCATCTGCCACAAGAGGCTGGTTTCAAAGATACGGGTTTAAAGGGGTaGGTGGAGGGCCTTCAGCAC +
Preference number: 3 (lower is better)
Translates to: SSGKTHYLHLPQEAGFKDTGLKG*VEGLQH
Trigger: GTGCTGAAGGCCCTCCACCAACCCCTTTAAACCCGT...ATCTTTGAAACCAGCCTCTTGTGGCAGATGAAGGTAATGTGTCTTGCCACTAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
3UTR-3UTR CAA 90 bp CATGCCCCAGACTCAGGCTGCCTTCTTCTCAATCCAGCAAACTGGACTACCTGCCCAATTCAGTCTTTATaGACTGCTTCATTTGGAGAC +
Preference number: 3 (lower is better)
Translates to: HAPDSGCLLLNPANWTTCPIQSL*TASFGD
Trigger: GTCTCCAAATGAAGCAGTCAATAAAGACTGAATTGG...GCAGGTAGTCCAGTTTGCTGGATTGAGAAGAAGGCAGCCTGAGTCTGGGGCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
3UTR TCA 72 bp GGACACAGCTTTGTGGTCCTGAGCTTGCTCAGCATGTaGGAGATCCAAGCAAATATGCAGTTCTTAGGGTGT +
Preference number: 3 (lower is better)
Translates to: GHSFVVLSLLSM*EIQANMQFLGC
Trigger: ACACCCTAAGAACTGCATATTTGCTTGGATCTCTCACATGCTGAGCAAGCTCAGGACCACAAAGCTGTGTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
3UTR CCA 72 bp ACTGCTTCATTTGGAGACCACCAAACAGGTGGAAAGTaGGAAGTGCCCTTTACATATCAAGGACTCCAGAGC +
Preference number: 3 (lower is better)
Translates to: TASFGDHQTGGK*EVPFTYQGLQS
Trigger: GCTCTGGAGTCCTTGATATGTAAAGGGCACTTCCCACTTTCCACCTGTTTGGTGGTCTCCAAATGAAGCAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
3UTR-3UTR CAA 90 bp GTTAAAATTAGTTACAGAACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATACGGGTTTAAAGGGGTaGGTGGAGGGCCTTCAGCAC +
Preference number: 3 (lower is better)
Translates to: VKISYRTHKVVERRGVHYTGLKG*VEGLQH
Trigger: GTGCTGAAGGCCCTCCACCAACCCCTTTAAACCCGT...ATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGTTCTGTAACTAATTTTAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
3UTR TCA 72 bp CTCAAAATTAGATATCGGGACACAGCTTTGTGGTCCTaGGCTTGCTCAGCATGTGAGAGATCCAAGCAAATA +
Preference number: 3 (lower is better)
Translates to: LKIRYRDTALWS*ACSACERSKQI
Trigger: TATTTGCTTGGATCTCTCACATGCTGAGCAAGCTCAGGACCACAAAGCTGTGTCCCGATATCTAATTTTGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
3UTR CCA 72 bp TTTATTGACTGCTTCATTTGGAGACCACCAAACAGGTaGAAAGTGGGAAGTGCCCTTTACATATCAAGGACT +
Preference number: 3 (lower is better)
Translates to: FIDCFIWRPPNR*KVGSALYISRT
Trigger: AGTCCTTGATATGTAAAGGGCACTTCCCACTTTCCACCTGTTTGGTGGTCTCCAAATGAAGCAGTCAATAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
3UTR GCA 72 bp GGGAAAGACCATGGGACAGTCAGCATGGAATATGGATaGTTAAATCAAAGGAGACCAGATTTGAATTTAAGC +
Preference number: 3 (lower is better)
Translates to: GKDHGTVSMEYG*LNQRRPDLNLS
Trigger: GCTTAAATTCAAATCTGGTCTCCTTTGATTTAAGCATCCATATTCCATGCTGACTGTCCCATGGTCTTTCCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS-3UTR TCA 90 bp ACTATGTACACGGGTTTAAAGGGGTTGGTGGAGGGCCTTCAGCACCAGTGGGGCGGCGGCCCCACAGGATaGGCAGCGGTAGGGCTGGCG +
Preference number: 4 (lower is better)
Translates to: TMYTGLKGLVEGLQHQWGGGPTG*AAVGLA
Trigger: CGCCAGCCCTACCGCTGCTCATCCTGTGGGGCCGCC...GCCCCACTGGTGCTGAAGGCCCTCCACCAACCCCTTTAAACCCGTGTACATAGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp ACTATGTACACGGGTTTAAAGGGGTTGGTGGAGGGCCTTCAGCACCAGTGGGGCAGGTGTAGCTCCTGGTaGTCCAGGAGCTGGCTGGGG +
Preference number: 4 (lower is better)
Translates to: TMYTGLKGLVEGLQHQWGRCSSW*SRSWLG
Trigger: CCCCAGCCAGCTCCTGGAGCACCAGGAGCTACACCT...GCCCCACTGGTGCTGAAGGCCCTCCACCAACCCCTTTAAACCCGTGTACATAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp TATGTACACGGGTTTAAAGGGGTTGGTGGAGGGCCTTCAGCACCAGTGGGGCCAGGCTGGCGCCCAGCATaGATCACAAGCTGGTGGACC +
Preference number: 4 (lower is better)
Translates to: YVHGFKGVGGGPSAPVGPGWRPA*ITSWWT
Trigger: GGTCCACCAGCTTGTGATCCATGCTGGGCGCCAGCC...TGGCCCCACTGGTGCTGAAGGCCCTCCACCAACCCCTTTAAACCCGTGTACATA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR TCA 90 bp GATGGCCAGGCTGAGAAGTGCACCAATGTTTCTCTATGTGTTTGCACGCCCCACCCTCTGTGGCCACTGTaGCTCCAGGGTCAGCCACGC +
Preference number: 4 (lower is better)
Translates to: DGQAEKCTNVSLCVCTPHPLWPL*LQGQPR
Trigger: GCGTGGCTGACCCTGGAGTCACAGTGGCCACAGAGG...GTGGGGCGTGCAAACACATAGAGAAACATTGGTGCACTTCTCAGCCTGGCCATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS-3UTR TCA 90 bp CCTCTAGTGGCAAGACACATTACCTTCATCTGCCACAAGAGGCTGGTTTCAAAGGCTCCCCCGTGTGTGTaGGCCGGTGGCGGGCCAGGT +
Preference number: 4 (lower is better)
Translates to: PLVARHITFICHKRLVSKAPPCV*AGGGPG
Trigger: ACCTGGCCCGCCACCGGCTCACACACACGGGGGAGC...CTTTGAAACCAGCCTCTTGTGGCAGATGAAGGTAATGTGTCTTGCCACTAGAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS-3UTR TCA 90 bp ACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTTACATATCAAGGACTCCAGACTCACGGAGCCGCAGTaGCGAGGGGAAGGCGGCCCC +
Preference number: 4 (lower is better)
Translates to: TTKQVESGKCPLHIKDSRLTEPQ*RGEGGP
Trigger: GGGGCCGCCTTCCCCTCGTCACTGCGGCTCCGTGAG...TCTGGAGTCCTTGATATGTAAAGGGCACTTCCCACTTTCCACCTGTTTGGTGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp CATGCCCCAGACTCAGGCTGCCTTCTTCTCAATCCAGCAAACTGGACTACCTGCCAAAGGGACACCTCCTaGTCCGTGGGTACGCCGGTG +
Preference number: 4 (lower is better)
Translates to: HAPDSGCLLLNPANWTTCQRDTS*SVGTPV
Trigger: CACCGGCGTACCCACGGAGCAGGAGGTGTCCCTTTG...GCAGGTAGTCCAGTTTGCTGGATTGAGAAGAAGGCAGCCTGAGTCTGGGGCATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp ACTATGTACACGGGTTTAAAGGGGTTGGTGGAGGGCCTTCAGCACCAGTGGGGCTGCACCAGGCGATGCTaGCTCAGAGTGGAGCTCTGC +
Preference number: 4 (lower is better)
Translates to: TMYTGLKGLVEGLQHQWGCTRRC*LRVELC
Trigger: GCAGAGCTCCACTCTGAGGCAGCATCGCCTGGTGCA...GCCCCACTGGTGCTGAAGGCCCTCCACCAACCCCTTTAAACCCGTGTACATAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp ACTATGTACACGGGTTTAAAGGGGTTGGTGGAGGGCCTTCAGCACCAGTGGGGCATGGGCGGCTTCATGTaGCTGCAGGCGAGCAGCAGA +
Preference number: 4 (lower is better)
Translates to: TMYTGLKGLVEGLQHQWGMGGFM*LQASSR
Trigger: TCTGCTGCTCGCCTGCAGGCACATGAAGCCGCCCAT...GCCCCACTGGTGCTGAAGGCCCTCCACCAACCCCTTTAAACCCGTGTACATAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR TCA 90 bp AGAACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTACACGGGTTTAAAGGCGGCCCCACAGGATaGGCAGCGGTAGGGCTGGCG +
Preference number: 4 (lower is better)
Translates to: RTHKVVERRGVHYVHGFKGGPTG*AAVGLA
Trigger: CGCCAGCCCTACCGCTGCTCATCCTGTGGGGCCGCC...TTTAAACCCGTGTACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGTTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp ATTGACTGCTTCATTTGGAGACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTGCGGCCGCGCAGCGATaGTCACGGAGCCGCAGTGAC +
Preference number: 4 (lower is better)
Translates to: IDCFIWRPPNRWKVGSALAAAQR*SRSRSD
Trigger: GTCACTGCGGCTCCGTGAGCATCGCTGCGCGGCCGC...AAGGGCACTTCCCACTTTCCACCTGTTTGGTGGTCTCCAAATGAAGCAGTCAAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp GTACACTATGTACACGGGTTTAAAGGGGTTGGTGGAGGGCCTTCAGCACCAGTGGCTTCTTGCACTCACTaGACTCCGGACCCCGACGCC +
Preference number: 4 (lower is better)
Translates to: VHYVHGFKGVGGGPSAPVASCTH*TPDPDA
Trigger: GGCGTCGGGGTCCGGAGTGCAGTGAGTGCAAGAAGC...CACTGGTGCTGAAGGCCCTCCACCAACCCCTTTAAACCCGTGTACATAGTGTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp ACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTACACGGGTTTAAAGGGGGGTGGTGGCTTGGCTaGCACTGCCTCCTGCGGTGC +
Preference number: 4 (lower is better)
Translates to: THKVVERRGVHYVHGFKGGWWLG*HCLLRC
Trigger: GCACCGCAGGAGGCAGTGCCAGCCAAGCCACCACCC...CCCTTTAAACCCGTGTACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGT
58% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp CAAGTTCTATCTGGGGTGCTAGGAATGCAGCCAGAAGTCAGCTCTATTGCAGCCGGGCACCTTGGGTGGTaGCTTGGCTGGCACTGCCTC +
Preference number: 4 (lower is better)
Translates to: QVLSGVLGMQPEVSSIAAGHLGW*LGWHCL
Trigger: GAGGCAGTGCCAGCCAAGCCACCACCCAAGGTGCCC...GGCTGCAATAGAGCTGACTTCTGGCTGCATTCCTAGCACCCCAGATAGAACTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp GTACACTATGTACACGGGTTTAAAGGGGTTGGTGGAGGGCCTTCAGCACCAGTGACAGCCACTCGAGCCTaGCCCACAGGAGGGCCCAAA +
Preference number: 4 (lower is better)
Translates to: VHYVHGFKGVGGGPSAPVTATRA*PTGGPK
Trigger: TTTGGGCCCTCCTGTGGGCCAGGCTCGAGTGGCTGT...CACTGGTGCTGAAGGCCCTCCACCAACCCCTTTAAACCCGTGTACATAGTGTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp GACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTTACATATCAAGGACTCCAGGTATGGGCTCGCCGGTaGGCCAGGAGGAGGGCTTCG +
Preference number: 4 (lower is better)
Translates to: DHQTGGKWEVPFTYQGLQVWARR*ARRRAS
Trigger: CGAAGCCCTCCTCCTGGCCCACCGGCGAGCCCATAC...CTGGAGTCCTTGATATGTAAAGGGCACTTCCCACTTTCCACCTGTTTGGTGGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp CTCAAAATAACTCAAGGGCACAGGCCTGTCATCCTAACTACTCAAGGGGCTGTGACACTCAAAGCGCCGTaGGGCCTGGGCAGCAGCGGC +
Preference number: 4 (lower is better)
Translates to: LKITQGHRPVILTTQGAVTLKAP*GLGSSG
Trigger: GCCGCTGCTGCCCAGGCCCCACGGCGCTTTGAGTGT...CACAGCCCCTTGAGTAGTTAGGATGACAGGCCTGTGCCCTTGAGTTATTTTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp AGAGGGGTACACTATGTACACGGGTTTAAAGGGGTTGGTGGAGGGCCTTCAGCAGGTCGCTCACCCGTGTaGATGCGGCGATGTTCTGCC +
Preference number: 4 (lower is better)
Translates to: RGVHYVHGFKGVGGGPSAGRSPV*MRRCSA
Trigger: GGCAGAACATCGCCGCATCCACACGGGTGAGCGACC...TGCTGAAGGCCCTCCACCAACCCCTTTAAACCCGTGTACATAGTGTACCCCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp ACAGGTGGAAAGTGGGAAGTGCCCTTTACATATCAAGGACTCCAGAGCAACCCCCCCACCAGCTCAAAGTaGTGCTGGGGCACGTGGGAG +
Preference number: 4 (lower is better)
Translates to: TGGKWEVPFTYQGLQSNPPTSSK*CWGTWE
Trigger: CTCCCACGTGCCCCAGCAGCACTTTGAGCTGGTGGG...GGGGTTGCTCTGGAGTCCTTGATATGTAAAGGGCACTTCCCACTTTCCACCTGT
57% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp GTACACTATGTACACGGGTTTAAAGGGGTTGGTGGAGGGCCTTCAGCACCAGTGTGGCTTGGCTGGCACTaGCTCCTGCGGTGCCATCAT +
Preference number: 4 (lower is better)
Translates to: VHYVHGFKGVGGGPSAPVWLGWH*LLRCHH
Trigger: ATGATGGCACCGCAGGAGGCAGTGCCAGCCAAGCCA...CACTGGTGCTGAAGGCCCTCCACCAACCCCTTTAAACCCGTGTACATAGTGTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp ACAGGTGGAAAGTGGGAAGTGCCCTTTACATATCAAGGACTCCAGAGCAACCCCGGGAAGTGCTGGGCATaGACCAGGCGATGCTGCCTC +
Preference number: 4 (lower is better)
Translates to: TGGKWEVPFTYQGLQSNPGKCWA*TRRCCL
Trigger: GAGGCAGCATCGCCTGGTGCATGCCCAGCACTTCCC...GGGGTTGCTCTGGAGTCCTTGATATGTAAAGGGCACTTCCCACTTTCCACCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp GATATCGGGACACAGCTTTGTGGTCCTGAGCTTGCTCAGCATGTGAGAGATCCAGGGAAGTGCTGGGCATaGACCAGGCGATGCTGCCTC +
Preference number: 4 (lower is better)
Translates to: DIGTQLCGPELAQHVRDPGKCWA*TRRCCL
Trigger: GAGGCAGCATCGCCTGGTGCATGCCCAGCACTTCCC...TGGATCTCTCACATGCTGAGCAAGCTCAGGACCACAAAGCTGTGTCCCGATATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp AGAGGGGTACACTATGTACACGGGTTTAAAGGGGTTGGTGGAGGGCCTTCAGCAGCTCACCCGTGTGGATaGGGCGATGTTCTGCCAGAC +
Preference number: 4 (lower is better)
Translates to: RGVHYVHGFKGVGGGPSAAHPCG*GDVLPD
Trigger: GTCTGGCAGAACATCGCCGCATCCACACGGGTGAGC...TGCTGAAGGCCCTCCACCAACCCCTTTAAACCCGTGTACATAGTGTACCCCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp GACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTTACATATCAAGGACTCCAGGCCGCCTGGTGTTGCTaGTGGTGGGTCTTGCGGTGC +
Preference number: 4 (lower is better)
Translates to: DHQTGGKWEVPFTYQGLQAAWCC*WWVLRC
Trigger: GCACCGCAAGACCCACCAGCAGCAACACCAGGCGGC...CTGGAGTCCTTGATATGTAAAGGGCACTTCCCACTTTCCACCTGTTTGGTGGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp GACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTTACATATCAAGGACTCCAGGCTCCAGGAGCTGGCTaGGGGACAGGAGCAGTTGCC +
Preference number: 4 (lower is better)
Translates to: DHQTGGKWEVPFTYQGLQAPGAG*GTGAVA
Trigger: GGCAACTGCTCCTGTCCCCCAGCCAGCTCCTGGAGC...CTGGAGTCCTTGATATGTAAAGGGCACTTCCCACTTTCCACCTGTTTGGTGGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp ACTCAAAATAACTCAAGGGCACAGGCCTGTCATCCTAACTACTCAAGGGGCTGTGGGTGGTGGCTTGGCTaGCACTGCCTCCTGCGGTGC +
Preference number: 4 (lower is better)
Translates to: TQNNSRAQACHPNYSRGCGWWLG*HCLLRC
Trigger: GCACCGCAGGAGGCAGTGCCAGCCAAGCCACCACCC...ACAGCCCCTTGAGTAGTTAGGATGACAGGCCTGTGCCCTTGAGTTATTTTGAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp ACATCAGGCTGGAAATGGGATGGCCAGGCTGAGAAGTGCACCAATGTTTCTCTAAGAGGATTCGGGGTATaGGCTCGCCGGTGGGCCAGG +
Preference number: 4 (lower is better)
Translates to: TSGWKWDGQAEKCTNVSLRGFGV*ARRWAR
Trigger: CCTGGCCCACCGGCGAGCCCATACCCCGAATCCTCT...TAGAGAAACATTGGTGCACTTCTCAGCCTGGCCATCCCATTTCCAGCCTGATGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp GACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTTACATATCAAGGACTCCAGGTGTGTGTGAGCCGGTaGCGGGCCAGGTTGGCTGGT +
Preference number: 4 (lower is better)
Translates to: DHQTGGKWEVPFTYQGLQVCVSR*RARLAG
Trigger: ACCAGCCAACCTGGCCCGCCACCGGCTCACACACAC...CTGGAGTCCTTGATATGTAAAGGGCACTTCCCACTTTCCACCTGTTTGGTGGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp TACAGAACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTACACGGGTTTACACTCAAAGCGCCGTaGGGCCTGGGCAGCAGCGGC +
Preference number: 4 (lower is better)
Translates to: YRTHKVVERRGVHYVHGFTLKAP*GLGSSG
Trigger: GCCGCTGCTGCCCAGGCCCCACGGCGCTTTGAGTGT...AAACCCGTGTACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGTTCTGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp ACTATGTACACGGGTTTAAAGGGGTTGGTGGAGGGCCTTCAGCACCAGTGGGGCTTCAGATGGGTACTCTaGCGGAAGGCCTTGCCACAG +
Preference number: 4 (lower is better)
Translates to: TMYTGLKGLVEGLQHQWGFRWVL*RKALPQ
Trigger: CTGTGGCAAGGCCTTCCGCCAGAGTACCCATCTGAA...GCCCCACTGGTGCTGAAGGCCCTCCACCAACCCCTTTAAACCCGTGTACATAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp GGAGACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTTACATATCAAGGACTCTGTCGGACGGCCGCCTaGTGTTGCTGCTGGTGGGTC +
Preference number: 4 (lower is better)
Translates to: GDHQTGGKWEVPFTYQGLCRTAA*CCCWWV
Trigger: GACCCACCAGCAGCAACACCAGGCGGCCGTCCGACA...GAGTCCTTGATATGTAAAGGGCACTTCCCACTTTCCACCTGTTTGGTGGTCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp TATGTACACGGGTTTAAAGGGGTTGGTGGAGGGCCTTCAGCACCAGTGGGGCCAGAGGGTAGATCTCAATaGCCTCCACAAGGGGCAGAG +
Preference number: 4 (lower is better)
Translates to: YVHGFKGVGGGPSAPVGPEGRSQ*PPQGAE
Trigger: CTCTGCCCCTTGTGGAGGCCATTGAGATCTACCCTC...TGGCCCCACTGGTGCTGAAGGCCCTCCACCAACCCCTTTAAACCCGTGTACATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR TCA 90 bp ACTGCTTCATTTGGAGACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTTACACCTCTGTGGCCACTGTaGCTCCAGGGTCAGCCACGC +
Preference number: 4 (lower is better)
Translates to: TASFGDHQTGGKWEVPFTPLWPL*LQGQPR
Trigger: GCGTGGCTGACCCTGGAGTCACAGTGGCCACAGAGG...TGTAAAGGGCACTTCCCACTTTCCACCTGTTTGGTGGTCTCCAAATGAAGCAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR TCA 90 bp GTACACTATGTACACGGGTTTAAAGGGGTTGGTGGAGGGCCTTCAGCACCAGTGAAAACACCCTCCCGGTaGCTCCGAAGGTGCTGCTGT +
Preference number: 4 (lower is better)
Translates to: VHYVHGFKGVGGGPSAPVKTPSR*LRRCCC
Trigger: ACAGCAGCACCTTCGGAGTCACCGGGAGGGTGTTTT...CACTGGTGCTGAAGGCCCTCCACCAACCCCTTTAAACCCGTGTACATAGTGTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR TCA 90 bp ACAGGTGGAAAGTGGGAAGTGCCCTTTACATATCAAGGACTCCAGAGCAACCCCAGCTGCAGGCTCGGCTaGACTCTCCTCACATACGGG +
Preference number: 4 (lower is better)
Translates to: TGGKWEVPFTYQGLQSNPSCRLG*TLLTYG
Trigger: CCCGTATGTGAGGAGAGTTCAGCCGAGCCTGCAGCT...GGGGTTGCTCTGGAGTCCTTGATATGTAAAGGGCACTTCCCACTTTCCACCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR TCA 90 bp CAAGTTCTATCTGGGGTGCTAGGAATGCAGCCAGAAGTCAGCTCTATTGCAGCCAGCTGCAGGCTCGGCTaGACTCTCCTCACATACGGG +
Preference number: 4 (lower is better)
Translates to: QVLSGVLGMQPEVSSIAASCRLG*TLLTYG
Trigger: CCCGTATGTGAGGAGAGTTCAGCCGAGCCTGCAGCT...GGCTGCAATAGAGCTGACTTCTGGCTGCATTCCTAGCACCCCAGATAGAACTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS-3UTR TCA 90 bp GACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTTACATATCAAGGACTCCAGGGTGGTAGCGGTGCATaGGCAGGCGATAAGGGCGGT +
Preference number: 4 (lower is better)
Translates to: DHQTGGKWEVPFTYQGLQGGSGA*AGDKGG
Trigger: ACCGCCCTTATCGCCTGCTCATGCACCGCTACCACC...CTGGAGTCCTTGATATGTAAAGGGCACTTCCCACTTTCCACCTGTTTGGTGGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR TCA 90 bp ACATCAGGCTGGAAATGGGATGGCCAGGCTGAGAAGTGCACCAATGTTTCTCTAGGTGGTAGCGGTGCATaGGCAGGCGATAAGGGCGGT +
Preference number: 4 (lower is better)
Translates to: TSGWKWDGQAEKCTNVSLGGSGA*AGDKGG
Trigger: ACCGCCCTTATCGCCTGCTCATGCACCGCTACCACC...TAGAGAAACATTGGTGCACTTCTCAGCCTGGCCATCCCATTTCCAGCCTGATGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS-3UTR TCA 90 bp AAATTAGTTACAGAACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTACCTCACGGAGCCGCAGTaGCGAGGGGAAGGCGGCCCC +
Preference number: 4 (lower is better)
Translates to: KLVTELIRWWRGEGYTMYLTEPQ*RGEGGP
Trigger: GGGGCCGCCTTCCCCTCGTCACTGCGGCTCCGTGAG...GTACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGTTCTGTAACTAATTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR TCA 90 bp TGGAGACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTTACATATCAAGGACTCAGAGGTTGTACCACTaGGGGCTGTCGGGGAGGGGG +
Preference number: 4 (lower is better)
Translates to: WRPPNRWKVGSALYISRTQRLYH*GLSGRG
Trigger: CCCCCTCCCCGACAGCCCTCAGTGGTACAACCTCTG...AGTCCTTGATATGTAAAGGGCACTTCCCACTTTCCACCTGTTTGGTGGTCTCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp CTCAAAATAACTCAAGGGCACAGGCCTGTCATCCTAACTACTCAAGGGGCTGTGAGGTGTAGCTCCTGGTaGTCCAGGAGCTGGCTGGGG +
Preference number: 4 (lower is better)
Translates to: LKITQGHRPVILTTQGAVRCSSW*SRSWLG
Trigger: CCCCAGCCAGCTCCTGGAGCACCAGGAGCTACACCT...CACAGCCCCTTGAGTAGTTAGGATGACAGGCCTGTGCCCTTGAGTTATTTTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp TCAAGGGGCTGTGGCAGGAGGACCAACAAGCTCAAAGCCTGCTTAGGATATAGTGCTGGCACTGCCTCCTaGGGTGCCATCATCTTCAGG +
Preference number: 4 (lower is better)
Translates to: SRGCGRRTNKLKACLGYSAGTAS*GAIIFR
Trigger: CCTGAAGATGATGGCACCGCAGGAGGCAGTGCCAGC...ACTATATCCTAAGCAGGCTTTGAGCTTGTTGGTCCTCCTGCCACAGCCCCTTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp ACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTACACGGGTTTAAAGGGTTGGCTTCCGTCCCCTaGGGTCTCGCCCAATGGCCT +
Preference number: 4 (lower is better)
Translates to: THKVVERRGVHYVHGFKGLASVP*GLAQWP
Trigger: AGGCCATTGGGCGAGACCGCAGGGGACGGAAGCCAA...CCCTTTAAACCCGTGTACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp ACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTACACGGGTTTAAAGGGCAAAGGGACACCTCCTaGTCCGTGGGTACGCCGGTG +
Preference number: 4 (lower is better)
Translates to: THKVVERRGVHYVHGFKGQRDTS*SVGTPV
Trigger: CACCGGCGTACCCACGGAGCAGGAGGTGTCCCTTTG...CCCTTTAAACCCGTGTACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp ATGCAGCCAGAAGTCAGCTCTATTGCAGCCTGGCCTCATGATCCTCCGAATCATTGCACCAGGCGATGCTaGCTCAGAGTGGAGCTCTGC +
Preference number: 4 (lower is better)
Translates to: MQPEVSSIAAWPHDPPNHCTRRC*LRVELC
Trigger: GCAGAGCTCCACTCTGAGGCAGCATCGCCTGGTGCA...ATGATTCGGAGGATCATGAGGCCAGGCTGCAATAGAGCTGACTTCTGGCTGCAT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp GATATCGGGACACAGCTTTGTGGTCCTGAGCTTGCTCAGCATGTGAGAGATCCAGCTCACCCGTGTGGATaGGGCGATGTTCTGCCAGAC +
Preference number: 4 (lower is better)
Translates to: DIGTQLCGPELAQHVRDPAHPCG*GDVLPD
Trigger: GTCTGGCAGAACATCGCCGCATCCACACGGGTGAGC...TGGATCTCTCACATGCTGAGCAAGCTCAGGACCACAAAGCTGTGTCCCGATATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp TACAGAACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTACACGGGTTTGCCGCCTGGTGTTGCTaGTGGTGGGTCTTGCGGTGC +
Preference number: 4 (lower is better)
Translates to: YRTHKVVERRGVHYVHGFAAWCC*WWVLRC
Trigger: GCACCGCAAGACCCACCAGCAGCAACACCAGGCGGC...AAACCCGTGTACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGTTCTGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp ATTGACTGCTTCATTTGGAGACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTGCTCCAGGAGCTGGCTaGGGGACAGGAGCAGTTGCC +
Preference number: 4 (lower is better)
Translates to: IDCFIWRPPNRWKVGSALAPGAG*GTGAVA
Trigger: GGCAACTGCTCCTGTCCCCCAGCCAGCTCCTGGAGC...AAGGGCACTTCCCACTTTCCACCTGTTTGGTGGTCTCCAAATGAAGCAGTCAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp TGGAGACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTTACATATCAAGGACTGGGCACCTTGGGTGGTaGCTTGGCTGGCACTGCCTC +
Preference number: 4 (lower is better)
Translates to: WRPPNRWKVGSALYISRTGHLGW*LGWHCL
Trigger: GAGGCAGTGCCAGCCAAGCCACCACCCAAGGTGCCC...AGTCCTTGATATGTAAAGGGCACTTCCCACTTTCCACCTGTTTGGTGGTCTCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp GTACACTATGTACACGGGTTTAAAGGGGTTGGTGGAGGGCCTTCAGCACCAGTGGGCATCTGGAAGAGCTaGGAGCACTCGGAGCACTTG +
Preference number: 4 (lower is better)
Translates to: VHYVHGFKGVGGGPSAPVGIWKS*EHSEHL
Trigger: CAAGTGCTCCGAGTGCTCCCAGCTCTTCCAGATGCC...CACTGGTGCTGAAGGCCCTCCACCAACCCCTTTAAACCCGTGTACATAGTGTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp AGTTACAGAACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTACACGGGGGGAAGTGGGTGGCCTaGTGCTCCAGGAAGTCAGCG +
Preference number: 4 (lower is better)
Translates to: SYRTHKVVERRGVHYVHGGKWVA*CSRKSA
Trigger: CGCTGACTTCCTGGAGCACCAGGCCACCCACTTCCC...CCCGTGTACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGTTCTGTAACT
56% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp ATGCAGCCAGAAGTCAGCTCTATTGCAGCCTGGCCTCATGATCCTCCGAATCATGTGGGTGAGGGGACCTaGGTTTCCTGCTGTGTGGCA +
Preference number: 4 (lower is better)
Translates to: MQPEVSSIAAWPHDPPNHVGEGT*VSCCVA
Trigger: TGCCACACAGCAGGAAACCCAGGTCCCCTCACCCAC...ATGATTCGGAGGATCATGAGGCCAGGCTGCAATAGAGCTGACTTCTGGCTGCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp TACAGAACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTACACGGGTTTAGAGGATTCGGGGTATaGGCTCGCCGGTGGGCCAGG +
Preference number: 4 (lower is better)
Translates to: YRTHKVVERRGVHYVHGFRGFGV*ARRWAR
Trigger: CCTGGCCCACCGGCGAGCCCATACCCCGAATCCTCT...AAACCCGTGTACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGTTCTGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp TGGAGACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTTACATATCAAGGACTGTGTGTGTGAGCCGGTaGCGGGCCAGGTTGGCTGGT +
Preference number: 4 (lower is better)
Translates to: WRPPNRWKVGSALYISRTVCVSR*RARLAG
Trigger: ACCAGCCAACCTGGCCCGCCACCGGCTCACACACAC...AGTCCTTGATATGTAAAGGGCACTTCCCACTTTCCACCTGTTTGGTGGTCTCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp AGGCCTGTCATCCTAACTACTCAAGGGGCTGTGGCAGGAGGACCAACAAGCTCATTCAGATGGGTACTCTaGCGGAAGGCCTTGCCACAG +
Preference number: 4 (lower is better)
Translates to: RPVILTTQGAVAGGPTSSFRWVL*RKALPQ
Trigger: CTGTGGCAAGGCCTTCCGCCAGAGTACCCATCTGAA...TGAGCTTGTTGGTCCTCCTGCCACAGCCCCTTGAGTAGTTAGGATGACAGGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp AGAGGGGTACACTATGTACACGGGTTTAAAGGGGTTGGTGGAGGGCCTTCAGCATGGTGTTGCTGCTGGTaGGTCTTGCGGTGCTTCCAG +
Preference number: 4 (lower is better)
Translates to: RGVHYVHGFKGVGGGPSAWCCCW*VLRCFQ
Trigger: CTGGAAGCACCGCAAGACCCACCAGCAGCAACACCA...TGCTGAAGGCCCTCCACCAACCCCTTTAAACCCGTGTACATAGTGTACCCCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp CCTCTAGTGGCAAGACACATTACCTTCATCTGCCACAAGAGGCTGGTTTCAAAGTGTCGGACGGCCGCCTaGTGTTGCTGCTGGTGGGTC +
Preference number: 4 (lower is better)
Translates to: PLVARHITFICHKRLVSKCRTAA*CCCWWV
Trigger: GACCCACCAGCAGCAACACCAGGCGGCCGTCCGACA...CTTTGAAACCAGCCTCTTGTGGCAGATGAAGGTAATGTGTCTTGCCACTAGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS-3UTR TCA 90 bp TTATTGACTGCTTCATTTGGAGACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTGCTGCCTCAGTGGGTaGGGGGACCTGGGTTTCCTG +
Preference number: 4 (lower is better)
Translates to: LLTASFGDHQTGGKWEVPCCLSG*GDLGFL
Trigger: CAGGAAACCCAGGTCCCCTCACCCACTGAGGCAGCA...GGGCACTTCCCACTTTCCACCTGTTTGGTGGTCTCCAAATGAAGCAGTCAATAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR TCA 90 bp ATTGACTGCTTCATTTGGAGACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTGGTGGCCGCCCCACCTaGCTCTCCACTGTTGTTCCT +
Preference number: 4 (lower is better)
Translates to: IDCFIWRPPNRWKVGSALGGRPT*LSTVVP
Trigger: AGGAACAACAGTGGAGAGTCAGGTGGGGCGGCCACC...AAGGGCACTTCCCACTTTCCACCTGTTTGGTGGTCTCCAAATGAAGCAGTCAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR TCA 90 bp ACTCAAAATAACTCAAGGGCACAGGCCTGTCATCCTAACTACTCAAGGGGCTGTGGTGGCCGCCCCACCTaGCTCTCCACTGTTGTTCCT +
Preference number: 4 (lower is better)
Translates to: TQNNSRAQACHPNYSRGCGGRPT*LSTVVP
Trigger: AGGAACAACAGTGGAGAGTCAGGTGGGGCGGCCACC...ACAGCCCCTTGAGTAGTTAGGATGACAGGCCTGTGCCCTTGAGTTATTTTGAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS-3UTR TCA 90 bp AGAACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTACACGGGTTTAAACAGAGGTTGTACCACTaGGGGCTGTCGGGGAGGGGG +
Preference number: 4 (lower is better)
Translates to: RTHKVVERRGVHYVHGFKQRLYH*GLSGRG
Trigger: CCCCCTCCCCGACAGCCCTCAGTGGTACAACCTCTG...TTTAAACCCGTGTACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGTTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp GTACACTATGTACACGGGTTTAAAGGGGTTGGTGGAGGGCCTTCAGCACCAGTGCCACAGGGACACGAATaGAGAGGATTCGGGGTATGG +
Preference number: 4 (lower is better)
Translates to: VHYVHGFKGVGGGPSAPVPQGHE*RGFGVW
Trigger: CCATACCCCGAATCCTCTGCATTCGTGTCCCTGTGG...CACTGGTGCTGAAGGCCCTCCACCAACCCCTTTAAACCCGTGTACATAGTGTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp GGCTGCCTTCTTCTCAATCCAGCAAACTGGACTACCTGCCAAGTTCTATCTGGGTGGTGCCGGGTCAGCTaGAACGCCTTACCAAACTCC +
Preference number: 4 (lower is better)
Translates to: GCLLLNPANWTTCQVLSGWCRVS*NALPNS
Trigger: GGAGTTTGGTAAGGCGTTGCAGCTGACCCGGCACCA...CCCAGATAGAACTTGGCAGGTAGTCCAGTTTGCTGGATTGAGAAGAAGGCAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp GGAGACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTTACATATCAAGGACTCTGCACAAAACGCTGGTaGCGGGTCAGCTGCAACGCC +
Preference number: 4 (lower is better)
Translates to: GDHQTGGKWEVPFTYQGLCTKRW*RVSCNA
Trigger: GGCGTTGCAGCTGACCCGGCACCAGCGTTTTGTGCA...GAGTCCTTGATATGTAAAGGGCACTTCCCACTTTCCACCTGTTTGGTGGTCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp ACAGGTGGAAAGTGGGAAGTGCCCTTTACATATCAAGGACTCCAGAGCAACCCCGCTGCTGGTGGGTCTTaGGGTGCTTCCAGAGATTGG +
Preference number: 4 (lower is better)
Translates to: TGGKWEVPFTYQGLQSNPAAGGS*GASRDW
Trigger: CCAATCTCTGGAAGCACCGCAAGACCCACCAGCAGC...GGGGTTGCTCTGGAGTCCTTGATATGTAAAGGGCACTTCCCACTTTCCACCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp GGCTGCCTTCTTCTCAATCCAGCAAACTGGACTACCTGCCAAGTTCTATCTGGGGCTGCTGGTGGGTCTTaGGGTGCTTCCAGAGATTGG +
Preference number: 4 (lower is better)
Translates to: GCLLLNPANWTTCQVLSGAAGGS*GASRDW
Trigger: CCAATCTCTGGAAGCACCGCAAGACCCACCAGCAGC...CCCAGATAGAACTTGGCAGGTAGTCCAGTTTGCTGGATTGAGAAGAAGGCAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp TATGTACACGGGTTTAAAGGGGTTGGTGGAGGGCCTTCAGCACCAGTGGGGCCATCAAGACACTGGTACTaGCTCTCTTGGATGAGGGTC +
Preference number: 4 (lower is better)
Translates to: YVHGFKGVGGGPSAPVGPSRHWY*LSWMRV
Trigger: GACCCTCATCCAAGAGAGCCAGTACCAGTGTCTTGA...TGGCCCCACTGGTGCTGAAGGCCCTCCACCAACCCCTTTAAACCCGTGTACATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp ACTATGTACACGGGTTTAAAGGGGTTGGTGGAGGGCCTTCAGCACCAGTGGGGCCCACACTCAAGACACTaGTACTGGCTCTCTTGGATG +
Preference number: 4 (lower is better)
Translates to: TMYTGLKGLVEGLQHQWGPHSRH*YWLSWM
Trigger: CATCCAAGAGAGCCAGTACCAGTGTCTTGAGTGTGG...GCCCCACTGGTGCTGAAGGCCCTCCACCAACCCCTTTAAACCCGTGTACATAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp GATGGCCAGGCTGAGAAGTGCACCAATGTTTCTCTATGTGTTTGCACGCCCCACCTCCTCTGGTGGAACTaGTGTTGTGGGCAAAGGGAC +
Preference number: 4 (lower is better)
Translates to: DGQAEKCTNVSLCVCTPHLLWWN*CCGQRD
Trigger: GTCCCTTTGCCCACAACACCAGTTCCACCAGAGGAG...GTGGGGCGTGCAAACACATAGAGAAACATTGGTGCACTTCTCAGCCTGGCCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp TGGAGACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTTACATATCAAGGACTGGCTGGCGCCCAGCATaGATCACAAGCTGGTGGACC +
Preference number: 4 (lower is better)
Translates to: WRPPNRWKVGSALYISRTGWRPA*ITSWWT
Trigger: GGTCCACCAGCTTGTGATCCATGCTGGGCGCCAGCC...AGTCCTTGATATGTAAAGGGCACTTCCCACTTTCCACCTGTTTGGTGGTCTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR TCA 90 bp GATATCGGGACACAGCTTTGTGGTCCTGAGCTTGCTCAGCATGTGAGAGATCCAGGCCAGGTTGGCTGGTaGGTTGAAAGGCTTAGAGCA +
Preference number: 4 (lower is better)
Translates to: DIGTQLCGPELAQHVRDPGQVGW*VERLRA
Trigger: TGCTCTAAGCCTTTCAACTCACCAGCCAACCTGGCC...TGGATCTCTCACATGCTGAGCAAGCTCAGGACCACAAAGCTGTGTCCCGATATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp ACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTACACGGGTTTAAAGGGACCAGCTCAAAGTGCTaGTGGGGCACGTGGGAGTTC +
Preference number: 4 (lower is better)
Translates to: THKVVERRGVHYVHGFKGTSSKC*WGTWEF
Trigger: GAACTCCCACGTGCCCCAGCAGCACTTTGAGCTGGT...CCCTTTAAACCCGTGTACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp AGAACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTACACGGGTTTAAACCCACCAGCTCAAAGTaGTGCTGGGGCACGTGGGAG +
Preference number: 4 (lower is better)
Translates to: RTHKVVERRGVHYVHGFKPTSSK*CWGTWE
Trigger: CTCCCACGTGCCCCAGCAGCACTTTGAGCTGGTGGG...TTTAAACCCGTGTACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp CCTCTAGTGGCAAGACACATTACCTTCATCTGCCACAAGAGGCTGGTTTCAAAGTGGCTTGGCTGGCACTaGCTCCTGCGGTGCCATCAT +
Preference number: 4 (lower is better)
Translates to: PLVARHITFICHKRLVSKWLGWH*LLRCHH
Trigger: ATGATGGCACCGCAGGAGGCAGTGCCAGCCAAGCCA...CTTTGAAACCAGCCTCTTGTGGCAGATGAAGGTAATGTGTCTTGCCACTAGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp CATGCCCCAGACTCAGGCTGCCTTCTTCTCAATCCAGCAAACTGGACTACCTGCTCTTGCCACAAATGCTaGACTTATGGCGCCGCTCTA +
Preference number: 4 (lower is better)
Translates to: HAPDSGCLLLNPANWTTCSCHKC*TYGAAL
Trigger: TAGAGCGGCGCCATAAGTGCAGCATTTGTGGCAAGA...GCAGGTAGTCCAGTTTGCTGGATTGAGAAGAAGGCAGCCTGAGTCTGGGGCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp AAAATTAGTTACAGAACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTAGCGGCCGCGCAGCGATaGTCACGGAGCCGCAGTGAC +
Preference number: 4 (lower is better)
Translates to: KISYRTHKVVERRGVHYVAAAQR*SRSRSD
Trigger: GTCACTGCGGCTCCGTGAGCATCGCTGCGCGGCCGC...TACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGTTCTGTAACTAATTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp ACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTTACATATCAAGGACTCCAGAATGGGCGGCTTCATGTaGCTGCAGGCGAGCAGCAGA +
Preference number: 4 (lower is better)
Translates to: TTKQVESGKCPLHIKDSRMGGFM*LQASSR
Trigger: TCTGCTGCTCGCCTGCAGGCACATGAAGCCGCCCAT...TCTGGAGTCCTTGATATGTAAAGGGCACTTCCCACTTTCCACCTGTTTGGTGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp GACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTTACATATCAAGGACTCCAGGCTCACCTGTGTGGATaGGCCGATGGACCTGTAGTG +
Preference number: 4 (lower is better)
Translates to: DHQTGGKWEVPFTYQGLQAHLCG*ADGPVV
Trigger: CACTACAGGTCCATCGGCGCATCCACACAGGTGAGC...CTGGAGTCCTTGATATGTAAAGGGCACTTCCCACTTTCCACCTGTTTGGTGGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp ACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTACACGGGTTTAAAGGGGGGCAGAGCCTCCACTaGAGTTTCCATCACAGCCAG +
Preference number: 4 (lower is better)
Translates to: THKVVERRGVHYVHGFKGGQSLH*SFHHSQ
Trigger: CTGGCTGTGATGGAAACTGCAGTGGAGGCTCTGCCC...CCCTTTAAACCCGTGTACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGT
53% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp ACTGCTTCATTTGGAGACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTTACAGGCACGTGGGAGTTCTaGTGCACAAGCACCTCCTCC +
Preference number: 4 (lower is better)
Translates to: TASFGDHQTGGKWEVPFTGTWEF*CTSTSS
Trigger: GGAGGAGGTGCTTGTGCACCAGAACTCCCACGTGCC...TGTAAAGGGCACTTCCCACTTTCCACCTGTTTGGTGGTCTCCAAATGAAGCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp ATTGACTGCTTCATTTGGAGACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTTGCTGCTGGGGCACGTaGGAGTTCTGGTGCACAAGC +
Preference number: 4 (lower is better)
Translates to: IDCFIWRPPNRWKVGSALCCWGT*EFWCTS
Trigger: GCTTGTGCACCAGAACTCCCACGTGCCCCAGCAGCA...AAGGGCACTTCCCACTTTCCACCTGTTTGGTGGTCTCCAAATGAAGCAGTCAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp ACATCAGGCTGGAAATGGGATGGCCAGGCTGAGAAGTGCACCAATGTTTCTCTATTCAGGTGTAGCTCCTaGTGCTCCAGGAGCTGGCTG +
Preference number: 4 (lower is better)
Translates to: TSGWKWDGQAEKCTNVSLFRCSS*CSRSWL
Trigger: CAGCCAGCTCCTGGAGCACCAGGAGCTACACCTGAA...TAGAGAAACATTGGTGCACTTCTCAGCCTGGCCATCCCATTTCCAGCCTGATGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp GACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTTACATATCAAGGACTCCAGGGCATCTGGAAGAGCTaGGAGCACTCGGAGCACTTG +
Preference number: 4 (lower is better)
Translates to: DHQTGGKWEVPFTYQGLQGIWKS*EHSEHL
Trigger: CAAGTGCTCCGAGTGCTCCCAGCTCTTCCAGATGCC...CTGGAGTCCTTGATATGTAAAGGGCACTTCCCACTTTCCACCTGTTTGGTGGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp ACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTTACATATCAAGGACTCCAGAGAGCAGGGAAGTGGGTaGCCTGGTGCTCCAGGAAGT +
Preference number: 4 (lower is better)
Translates to: TTKQVESGKCPLHIKDSREQGSG*PGAPGS
Trigger: ACTTCCTGGAGCACCAGGCCACCCACTTCCCTGCTC...TCTGGAGTCCTTGATATGTAAAGGGCACTTCCCACTTTCCACCTGTTTGGTGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp ACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTTACATATCAAGGACTCCAGAGTGGGTGAGGGGACCTaGGTTTCCTGCTGTGTGGCA +
Preference number: 4 (lower is better)
Translates to: TTKQVESGKCPLHIKDSRVGEGT*VSCCVA
Trigger: TGCCACACAGCAGGAAACCCAGGTCCCCTCACCCAC...TCTGGAGTCCTTGATATGTAAAGGGCACTTCCCACTTTCCACCTGTTTGGTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp TACAGAACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTACACGGGTTTCGGTGCACAAAACGCTaGTGCCGGGTCAGCTGCAAC +
Preference number: 4 (lower is better)
Translates to: YRTHKVVERRGVHYVHGFRCTKR*CRVSCN
Trigger: GTTGCAGCTGACCCGGCACCAGCGTTTTGTGCACCG...AAACCCGTGTACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGTTCTGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp ACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTTACATATCAAGGACTCCAGACGGTGCACAAAACGCTaGTGCCGGGTCAGCTGCAAC +
Preference number: 4 (lower is better)
Translates to: TTKQVESGKCPLHIKDSRRCTKR*CRVSCN
Trigger: GTTGCAGCTGACCCGGCACCAGCGTTTTGTGCACCG...TCTGGAGTCCTTGATATGTAAAGGGCACTTCCCACTTTCCACCTGTTTGGTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp GATATCGGGACACAGCTTTGTGGTCCTGAGCTTGCTCAGCATGTGAGAGATCCAGTTCTGCCAGACGCATaGAGATGGCAAAGGCCTTGC +
Preference number: 4 (lower is better)
Translates to: DIGTQLCGPELAQHVRDPVLPDA*RWQRPC
Trigger: GCAAGGCCTTTGCCATCTCCATGCGTCTGGCAGAAC...TGGATCTCTCACATGCTGAGCAAGCTCAGGACCACAAAGCTGTGTCCCGATATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp GACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTTACATATCAAGGACTCCAGTGGTGTTGCTGCTGGTaGGTCTTGCGGTGCTTCCAG +
Preference number: 4 (lower is better)
Translates to: DHQTGGKWEVPFTYQGLQWCCCW*VLRCFQ
Trigger: CTGGAAGCACCGCAAGACCCACCAGCAGCAACACCA...CTGGAGTCCTTGATATGTAAAGGGCACTTCCCACTTTCCACCTGTTTGGTGGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR TCA 90 bp AAATTAGTTAAAATTAGTTACAGAACTCATAAGGTGGTGGAGAGGAGAGGGGTAGCTCCCCCGTGTGTGTaGGCCGGTGGCGGGCCAGGT +
Preference number: 4 (lower is better)
Translates to: KLVKISYRTHKVVERRGVAPPCV*AGGGPG
Trigger: ACCTGGCCCGCCACCGGCTCACACACACGGGGGAGC...TACCCCTCTCCTCTCCACCACCTTATGAGTTCTGTAACTAATTTTAACTAATTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR TCA 90 bp ATGCAGCCAGAAGTCAGCTCTATTGCAGCCTGGCCTCATGATCCTCCGAATCATGTGACGTCTCTGTGCTaGAGAGCTTCTTGCACTCAC +
Preference number: 4 (lower is better)
Translates to: MQPEVSSIAAWPHDPPNHVTSLC*RASCTH
Trigger: GTGAGTGCAAGAAGCTCTTCAGCACAGAGACGTCAC...ATGATTCGGAGGATCATGAGGCCAGGCTGCAATAGAGCTGACTTCTGGCTGCAT
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp AGTTACAGAACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTACACGGGACGTGGGAGTTCTGGTaGACAAGCACCTCCTCCAAG +
Preference number: 4 (lower is better)
Translates to: SYRTHKVVERRGVHYVHGTWEFW*TSTSSK
Trigger: CTTGGAGGAGGTGCTTGTGCACCAGAACTCCCACGT...CCCGTGTACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGTTCTGTAACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp GGAGACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTTACATATCAAGGACTCCCACAGGGACACGAATaGAGAGGATTCGGGGTATGG +
Preference number: 4 (lower is better)
Translates to: GDHQTGGKWEVPFTYQGLPQGHE*RGFGVW
Trigger: CCATACCCCGAATCCTCTGCATTCGTGTCCCTGTGG...GAGTCCTTGATATGTAAAGGGCACTTCCCACTTTCCACCTGTTTGGTGGTCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp ACTGCTTCATTTGGAGACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTTACATGGTGCCGGGTCAGCTaGAACGCCTTACCAAACTCC +
Preference number: 4 (lower is better)
Translates to: TASFGDHQTGGKWEVPFTWCRVS*NALPNS
Trigger: GGAGTTTGGTAAGGCGTTGCAGCTGACCCGGCACCA...TGTAAAGGGCACTTCCCACTTTCCACCTGTTTGGTGGTCTCCAAATGAAGCAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp TGTGGTCCTGAGCTTGCTCAGCATGTGAGAGATCCAAGCAAATATGCAGTTCTTTGCACAAAACGCTGGTaGCGGGTCAGCTGCAACGCC +
Preference number: 4 (lower is better)
Translates to: CGPELAQHVRDPSKYAVLCTKRW*RVSCNA
Trigger: GGCGTTGCAGCTGACCCGGCACCAGCGTTTTGTGCA...AAGAACTGCATATTTGCTTGGATCTCTCACATGCTGAGCAAGCTCAGGACCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp AGAGGGGTACACTATGTACACGGGTTTAAAGGGGTTGGTGGAGGGCCTTCAGCAACATCTTGCCACAAATaGTGCACTTATGGCGCCGCT +
Preference number: 4 (lower is better)
Translates to: RGVHYVHGFKGVGGGPSATSCHK*CTYGAA
Trigger: AGCGGCGCCATAAGTGCAGCATTTGTGGCAAGATGT...TGCTGAAGGCCCTCCACCAACCCCTTTAAACCCGTGTACATAGTGTACCCCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp ACAGGTGGAAAGTGGGAAGTGCCCTTTACATATCAAGGACTCCAGAGCAACCCCCAGAGCCCACTTTCTTaGCACAGGTCCCACACTCAA +
Preference number: 4 (lower is better)
Translates to: TGGKWEVPFTYQGLQSNPQSPLS*HRSHTQ
Trigger: TTGAGTGTGGGACCTGTGGCAAGAAAGTGGGCTCTG...GGGGTTGCTCTGGAGTCCTTGATATGTAAAGGGCACTTCCCACTTTCCACCTGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp ACTGCTTCATTTGGAGACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTTACAGCTCACCTGTGTGGATaGGCCGATGGACCTGTAGTG +
Preference number: 4 (lower is better)
Translates to: TASFGDHQTGGKWEVPFTAHLCG*ADGPVV
Trigger: CACTACAGGTCCATCGGCGCATCCACACAGGTGAGC...TGTAAAGGGCACTTCCCACTTTCCACCTGTTTGGTGGTCTCCAAATGAAGCAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp TACAGAACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTACACGGGTTTGATGCGGCGATGTTCTaGCAGACGCATGGAGATGGC +
Preference number: 4 (lower is better)
Translates to: YRTHKVVERRGVHYVHGFDAAMF*QTHGDG
Trigger: GCCATCTCCATGCGTCTGGCAGAACATCGCCGCATC...AAACCCGTGTACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGTTCTGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp ACTGCTTCATTTGGAGACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTTACAGGGCAGAGCCTCCACTaGAGTTTCCATCACAGCCAG +
Preference number: 4 (lower is better)
Translates to: TASFGDHQTGGKWEVPFTGQSLH*SFHHSQ
Trigger: CTGGCTGTGATGGAAACTGCAGTGGAGGCTCTGCCC...TGTAAAGGGCACTTCCCACTTTCCACCTGTTTGGTGGTCTCCAAATGAAGCAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp AGAACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTACACGGGTTTAAAGGCACGTGGGAGTTCTaGTGCACAAGCACCTCCTCC +
Preference number: 4 (lower is better)
Translates to: RTHKVVERRGVHYVHGFKGTWEF*CTSTSS
Trigger: GGAGGAGGTGCTTGTGCACCAGAACTCCCACGTGCC...TTTAAACCCGTGTACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp ATTGACTGCTTCATTTGGAGACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTAGCTCAAAGTGCTGCTaGGGCACGTGGGAGTTCTGG +
Preference number: 4 (lower is better)
Translates to: IDCFIWRPPNRWKVGSALSSKCC*GTWEFW
Trigger: CCAGAACTCCCACGTGCCCCAGCAGCACTTTGAGCT...AAGGGCACTTCCCACTTTCCACCTGTTTGGTGGTCTCCAAATGAAGCAGTCAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp AGACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTTACATATCAAGGACTCCAAAGTCAGCGGGCATCTaGAAGAGCTGGGAGCACTCG +
Preference number: 4 (lower is better)
Translates to: RPPNRWKVGSALYISRTPKSAGI*KSWEHS
Trigger: CGAGTGCTCCCAGCTCTTCCAGATGCCCGCTGACTT...TGGAGTCCTTGATATGTAAAGGGCACTTCCCACTTTCCACCTGTTTGGTGGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp ACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTACACGGGTTTAAAGGGAGCAGGCTCCTCTGGTaGAACTGGTGTTGTGGGCAA +
Preference number: 4 (lower is better)
Translates to: THKVVERRGVHYVHGFKGSRLLW*NWCCGQ
Trigger: TTGCCCACAACACCAGTTCCACCAGAGGAGCCTGCT...CCCTTTAAACCCGTGTACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp ACATCAGGCTGGAAATGGGATGGCCAGGCTGAGAAGTGCACCAATGTTTCTCTAAGCAGGCTCCTCTGGTaGAACTGGTGTTGTGGGCAA +
Preference number: 4 (lower is better)
Translates to: TSGWKWDGQAEKCTNVSLSRLLW*NWCCGQ
Trigger: TTGCCCACAACACCAGTTCCACCAGAGGAGCCTGCT...TAGAGAAACATTGGTGCACTTCTCAGCCTGGCCATCCCATTTCCAGCCTGATGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp ACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTACACGGGTTTAAAGGGGGTCTCTGCAGGGGCTaGCTCAGGAAAGCTAATAGC +
Preference number: 4 (lower is better)
Translates to: THKVVERRGVHYVHGFKGGLCRG*LRKANS
Trigger: GCTATTAGCTTTCCTGAGCCAGCCCCTGCAGAGACC...CCCTTTAAACCCGTGTACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp ATTGACTGCTTCATTTGGAGACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTCAAATGCTGCACTTATaGCGCCGCTCTAGCCGGTGC +
Preference number: 4 (lower is better)
Translates to: IDCFIWRPPNRWKVGSALQMLHL*RRSSRC
Trigger: GCACCGGCTAGAGCGGCGCCATAAGTGCAGCATTTG...AAGGGCACTTCCCACTTTCCACCTGTTTGGTGGTCTCCAAATGAAGCAGTCAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp CCTCTAGTGGCAAGACACATTACCTTCATCTGCCACAAGAGGCTGGTTTCAAAGCAAATGCTGCACTTATaGCGCCGCTCTAGCCGGTGC +
Preference number: 4 (lower is better)
Translates to: PLVARHITFICHKRLVSKQMLHL*RRSSRC
Trigger: GCACCGGCTAGAGCGGCGCCATAAGTGCAGCATTTG...CTTTGAAACCAGCCTCTTGTGGCAGATGAAGGTAATGTGTCTTGCCACTAGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp ATTGACTGCTTCATTTGGAGACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTGAGCAGGAGGCTCCTTaGCTAAGACCTCTCCAGGAC +
Preference number: 4 (lower is better)
Translates to: IDCFIWRPPNRWKVGSALEQEAP*LRPLQD
Trigger: GTCCTGGAGAGGTCTTAGCCAAGGAGCCTCCTGCTC...AAGGGCACTTCCCACTTTCCACCTGTTTGGTGGTCTCCAAATGAAGCAGTCAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp AGTTACAGAACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTACACGGGGTGTGGATGCGCCGATaGACCTGTAGTGACGTCTCT +
Preference number: 4 (lower is better)
Translates to: SYRTHKVVERRGVHYVHGVWMRR*TCSDVS
Trigger: AGAGACGTCACTACAGGTCCATCGGCGCATCCACAC...CCCGTGTACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGTTCTGTAACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp AGTTACAGAACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTACACGGGCTGTGGTCTTTCAGATaGGTACTCTGGCGGAAGGCC +
Preference number: 4 (lower is better)
Translates to: SYRTHKVVERRGVHYVHGLWSFR*VLWRKA
Trigger: GGCCTTCCGCCAGAGTACCCATCTGAAAGACCACAG...CCCGTGTACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGTTCTGTAACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp GTACACTATGTACACGGGTTTAAAGGGGTTGGTGGAGGGCCTTCAGCACCAGTGGTGTGTAGGCGTCTGTaGTCTTTCAGATGGGTACTC +
Preference number: 4 (lower is better)
Translates to: VHYVHGFKGVGGGPSAPVVCRRL*SFRWVL
Trigger: GAGTACCCATCTGAAAGACCACAGACGCCTACACAC...CACTGGTGCTGAAGGCCCTCCACCAACCCCTTTAAACCCGTGTACATAGTGTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp AGTTACAGAACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTACACGGGCCAGACGCATGGAGATaGCAAAGGCCTTGCCACACA +
Preference number: 4 (lower is better)
Translates to: SYRTHKVVERRGVHYVHGPDAWR*QRPCHT
Trigger: TGTGTGGCAAGGCCTTTGCCATCTCCATGCGTCTGG...CCCGTGTACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGTTCTGTAACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR TCA 90 bp TACAGAACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTACACGGGTTTGGCCAGGTTGGCTGGTaGGTTGAAAGGCTTAGAGCA +
Preference number: 4 (lower is better)
Translates to: YRTHKVVERRGVHYVHGFGQVGW*VERLRA
Trigger: TGCTCTAAGCCTTTCAACTCACCAGCCAACCTGGCC...AAACCCGTGTACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGTTCTGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp ACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTTACATATCAAGGACTCCAGAACGTGGGAGTTCTGGTaGACAAGCACCTCCTCCAAG +
Preference number: 4 (lower is better)
Translates to: TTKQVESGKCPLHIKDSRTWEFW*TSTSSK
Trigger: CTTGGAGGAGGTGCTTGTGCACCAGAACTCCCACGT...TCTGGAGTCCTTGATATGTAAAGGGCACTTCCCACTTTCCACCTGTTTGGTGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp AAATTAGTTACAGAACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTACTTGGCTTCCGTCCCCTaGGGTCTCGCCCAATGGCCT +
Preference number: 4 (lower is better)
Translates to: KLVTELIRWWRGEGYTMYLASVP*GLAQWP
Trigger: AGGCCATTGGGCGAGACCGCAGGGGACGGAAGCCAA...GTACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGTTCTGTAACTAATTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp TGGAGACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTTACATATCAAGGACTTGCTGCTGTAGCTGGTaGGGTGAGAGAAAGAGCTGG +
Preference number: 4 (lower is better)
Translates to: WRPPNRWKVGSALYISRTCCCSW*GERKSW
Trigger: CCAGCTCTTTCTCTCACCCCACCAGCTACAGCAGCA...AGTCCTTGATATGTAAAGGGCACTTCCCACTTTCCACCTGTTTGGTGGTCTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp TTATTGACTGCTTCATTTGGAGACCACCAAACAGGTGGAAAGTGGGAAGTGCCCAGGTGCTGCTGTAGCTaGTGGGGTGAGAGAAAGAGC +
Preference number: 4 (lower is better)
Translates to: LLTASFGDHQTGGKWEVPRCCCS*WGERKS
Trigger: GCTCTTTCTCTCACCCCACCAGCTACAGCAGCACCT...GGGCACTTCCCACTTTCCACCTGTTTGGTGGTCTCCAAATGAAGCAGTCAATAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp TACAGAACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTACACGGGTTTAGGTGCTGCTGTAGCTaGTGGGGTGAGAGAAAGAGC +
Preference number: 4 (lower is better)
Translates to: YRTHKVVERRGVHYVHGFRCCCS*WGERKS
Trigger: GCTCTTTCTCTCACCCCACCAGCTACAGCAGCACCT...AAACCCGTGTACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGTTCTGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp ACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTACACGGGTTTAAAGGGTGGTCACCAAGGTGCTaGTCCAGACTAGAAGGGCTA +
Preference number: 4 (lower is better)
Translates to: THKVVERRGVHYVHGFKGWSPRC*SRLEGL
Trigger: TAGCCCTTCTAGTCTGGACCAGCACCTTGGTGACCA...CCCTTTAAACCCGTGTACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp AGAACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTACACGGGTTTAAAGAGCAGGAGGCTCCTTaGCTAAGACCTCTCCAGGAC +
Preference number: 4 (lower is better)
Translates to: RTHKVVERRGVHYVHGFKEQEAP*LRPLQD
Trigger: GTCCTGGAGAGGTCTTAGCCAAGGAGCCTCCTGCTC...TTTAAACCCGTGTACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp GTGCTTCAAGATTTTCCTCAGGCTTTGGGGACCTCTAGTGGCAAGACACATTACGTGTGGATGCGCCGATaGACCTGTAGTGACGTCTCT +
Preference number: 4 (lower is better)
Translates to: VLQDFPQALGTSSGKTHYVWMRR*TCSDVS
Trigger: AGAGACGTCACTACAGGTCCATCGGCGCATCCACAC...GTAATGTGTCTTGCCACTAGAGGTCCCCAAAGCCTGAGGAAAATCTTGAAGCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp CCTCTAGTGGCAAGACACATTACCTTCATCTGCCACAAGAGGCTGGTTTCAAAGCTGTGGTCTTTCAGATaGGTACTCTGGCGGAAGGCC +
Preference number: 4 (lower is better)
Translates to: PLVARHITFICHKRLVSKLWSFR*VLWRKA
Trigger: GGCCTTCCGCCAGAGTACCCATCTGAAAGACCACAG...CTTTGAAACCAGCCTCTTGTGGCAGATGAAGGTAATGTGTCTTGCCACTAGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp GATATCGGGACACAGCTTTGTGGTCCTGAGCTTGCTCAGCATGTGAGAGATCCAGTGTGTAGGCGTCTGTaGTCTTTCAGATGGGTACTC +
Preference number: 4 (lower is better)
Translates to: DIGTQLCGPELAQHVRDPVCRRL*SFRWVL
Trigger: GAGTACCCATCTGAAAGACCACAGACGCCTACACAC...TGGATCTCTCACATGCTGAGCAAGCTCAGGACCACAAAGCTGTGTCCCGATATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp GTGCTTCAAGATTTTCCTCAGGCTTTGGGGACCTCTAGTGGCAAGACACATTACCCAGACGCATGGAGATaGCAAAGGCCTTGCCACACA +
Preference number: 4 (lower is better)
Translates to: VLQDFPQALGTSSGKTHYPDAWR*QRPCHT
Trigger: TGTGTGGCAAGGCCTTTGCCATCTCCATGCGTCTGG...GTAATGTGTCTTGCCACTAGAGGTCCCCAAAGCCTGAGGAAAATCTTGAAGCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp ATTGACTGCTTCATTTGGAGACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTGTTCTGCCAGACGCATaGAGATGGCAAAGGCCTTGC +
Preference number: 4 (lower is better)
Translates to: IDCFIWRPPNRWKVGSALVLPDA*RWQRPC
Trigger: GCAAGGCCTTTGCCATCTCCATGCGTCTGGCAGAAC...AAGGGCACTTCCCACTTTCCACCTGTTTGGTGGTCTCCAAATGAAGCAGTCAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp AAATTAGTTACAGAACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTACGGTCGCTCACCCGTGTaGATGCGGCGATGTTCTGCC +
Preference number: 4 (lower is better)
Translates to: KLVTELIRWWRGEGYTMYGRSPV*MRRCSA
Trigger: GGCAGAACATCGCCGCATCCACACGGGTGAGCGACC...GTACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGTTCTGTAACTAATTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR TCA 90 bp ACAGGTGGAAAGTGGGAAGTGCCCTTTACATATCAAGGACTCCAGAGCAACCCCTTCTGCTTTTCGGTATaGATGTTCCACAGCCACTCG +
Preference number: 4 (lower is better)
Translates to: TGGKWEVPFTYQGLQSNPFCFSV*MFHSHS
Trigger: CGAGTGGCTGTGGAACATTCATACCGAAAAGCAGAA...GGGGTTGCTCTGGAGTCCTTGATATGTAAAGGGCACTTCCCACTTTCCACCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR TCA 90 bp ACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTTACATATCAAGGACTCCAGAGTGACGTCTCTGTGCTaGAGAGCTTCTTGCACTCAC +
Preference number: 4 (lower is better)
Translates to: TTKQVESGKCPLHIKDSRVTSLC*RASCTH
Trigger: GTGAGTGCAAGAAGCTCTTCAGCACAGAGACGTCAC...TCTGGAGTCCTTGATATGTAAAGGGCACTTCCCACTTTCCACCTGTTTGGTGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp AAATTAGTTACAGAACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTACGCTGGCACTGCCTCCTaGGGTGCCATCATCTTCAGG +
Preference number: 4 (lower is better)
Translates to: KLVTELIRWWRGEGYTMYAGTAS*GAIIFR
Trigger: CCTGAAGATGATGGCACCGCAGGAGGCAGTGCCAGC...GTACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGTTCTGTAACTAATTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp ACTGCTTCATTTGGAGACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTTACACTATGGTCACCAAGGTaGTGGTCCAGACTAGAAGGG +
Preference number: 4 (lower is better)
Translates to: TASFGDHQTGGKWEVPFTLWSPR*WSRLEG
Trigger: CCCTTCTAGTCTGGACCAGCACCTTGGTGACCATAG...TGTAAAGGGCACTTCCCACTTTCCACCTGTTTGGTGGTCTCCAAATGAAGCAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp ACATCAGGCTGGAAATGGGATGGCCAGGCTGAGAAGTGCACCAATGTTTCTCTAAGATGGCAAAGGCCTTaGCACACACTTCACACGCAA +
Preference number: 4 (lower is better)
Translates to: TSGWKWDGQAEKCTNVSLRWQRP*HTLHTQ
Trigger: TTGCGTGTGAAGTGTGTGGCAAGGCCTTTGCCATCT...TAGAGAAACATTGGTGCACTTCTCAGCCTGGCCATCCCATTTCCAGCCTGATGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp TTATTGACTGCTTCATTTGGAGACCACCAAACAGGTGGAAAGTGGGAAGTGCCCAGGAACGGTAGCTCTTaGCACAGTCAGGACAGGAGT +
Preference number: 4 (lower is better)
Translates to: LLTASFGDHQTGGKWEVPRNGSS*HSQDRS
Trigger: ACTCCTGTCCTGACTGTGGCAAGAGCTACCGTTCCT...GGGCACTTCCCACTTTCCACCTGTTTGGTGGTCTCCAAATGAAGCAGTCAATAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp CCTCTAGTGGCAAGACACATTACCTTCATCTGCCACAAGAGGCTGGTTTCAAAGAGGAACGGTAGCTCTTaGCACAGTCAGGACAGGAGT +
Preference number: 4 (lower is better)
Translates to: PLVARHITFICHKRLVSKRNGSS*HSQDRS
Trigger: ACTCCTGTCCTGACTGTGGCAAGAGCTACCGTTCCT...CTTTGAAACCAGCCTCTTGTGGCAGATGAAGGTAATGTGTCTTGCCACTAGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp TGGAGACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTTACATATCAAGGACTTGGTGGGTCTTGCGGTaGTTCCAGAGATTGGAGAAG +
Preference number: 4 (lower is better)
Translates to: WRPPNRWKVGSALYISRTWWVLR*FQRLEK
Trigger: CTTCTCCAATCTCTGGAAGCACCGCAAGACCCACCA...AGTCCTTGATATGTAAAGGGCACTTCCCACTTTCCACCTGTTTGGTGGTCTCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp AAATTAGTTACAGAACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTACTGCTGCTGGGGCACGTaGGAGTTCTGGTGCACAAGC +
Preference number: 4 (lower is better)
Translates to: KLVTELIRWWRGEGYTMYCCWGT*EFWCTS
Trigger: GCTTGTGCACCAGAACTCCCACGTGCCCCAGCAGCA...GTACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGTTCTGTAACTAATTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp GGAGACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTTACATATCAAGGACTCCCACACTCAAGACACTaGTACTGGCTCTCTTGGATG +
Preference number: 4 (lower is better)
Translates to: GDHQTGGKWEVPFTYQGLPHSRH*YWLSWM
Trigger: CATCCAAGAGAGCCAGTACCAGTGTCTTGAGTGTGG...GAGTCCTTGATATGTAAAGGGCACTTCCCACTTTCCACCTGTTTGGTGGTCTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp GTTAAAATTAGTTACAGAACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGGGAAGTGGGTGGCCTaGTGCTCCAGGAAGTCAGCG +
Preference number: 4 (lower is better)
Translates to: VKISYRTHKVVERRGVHYGKWVA*CSRKSA
Trigger: CGCTGACTTCCTGGAGCACCAGGCCACCCACTTCCC...ATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGTTCTGTAACTAATTTTAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp AAATTAGTTACAGAACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTACGAGCAGGGAAGTGGGTaGCCTGGTGCTCCAGGAAGT +
Preference number: 4 (lower is better)
Translates to: KLVTELIRWWRGEGYTMYEQGSG*PGAPGS
Trigger: ACTTCCTGGAGCACCAGGCCACCCACTTCCCTGCTC...GTACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGTTCTGTAACTAATTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp AAATTAGTTAAAATTAGTTACAGAACTCATAAGGTGGTGGAGAGGAGAGGGGTAGTATGGGCTCGCCGGTaGGCCAGGAGGAGGGCTTCG +
Preference number: 4 (lower is better)
Translates to: KLVKISYRTHKVVERRGVVWARR*ARRRAS
Trigger: CGAAGCCCTCCTCCTGGCCCACCGGCGAGCCCATAC...TACCCCTCTCCTCTCCACCACCTTATGAGTTCTGTAACTAATTTTAACTAATTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp AGAACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTACACGGGTTTAAAGAGGGTAGATCTCAATaGCCTCCACAAGGGGCAGAG +
Preference number: 4 (lower is better)
Translates to: RTHKVVERRGVHYVHGFKEGRSQ*PPQGAE
Trigger: CTCTGCCCCTTGTGGAGGCCATTGAGATCTACCCTC...TTTAAACCCGTGTACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp ACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTACACGGGTTTAAAGGGATCCATAGAGCTGGTTaGACTCAGAGCAGACATAGC +
Preference number: 4 (lower is better)
Translates to: THKVVERRGVHYVHGFKGIHRAG*TQSRHS
Trigger: GCTATGTCTGCTCTGAGTGCAACCAGCTCTATGGAT...CCCTTTAAACCCGTGTACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp ACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTTACATATCAAGGACTCCAGATCTTGCCACAAATGCTaGACTTATGGCGCCGCTCTA +
Preference number: 4 (lower is better)
Translates to: TTKQVESGKCPLHIKDSRSCHKC*TYGAAL
Trigger: TAGAGCGGCGCCATAAGTGCAGCATTTGTGGCAAGA...TCTGGAGTCCTTGATATGTAAAGGGCACTTCCCACTTTCCACCTGTTTGGTGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp ATTGACTGCTTCATTTGGAGACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTACATCTTGCCACAAATaGTGCACTTATGGCGCCGCT +
Preference number: 4 (lower is better)
Translates to: IDCFIWRPPNRWKVGSALTSCHK*CTYGAA
Trigger: AGCGGCGCCATAAGTGCAGCATTTGTGGCAAGATGT...AAGGGCACTTCCCACTTTCCACCTGTTTGGTGGTCTCCAAATGAAGCAGTCAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp ACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTTACATATCAAGGACTCCAGAAGATGGCAAAGGCCTTaGCACACACTTCACACGCAA +
Preference number: 4 (lower is better)
Translates to: TTKQVESGKCPLHIKDSRRWQRP*HTLHTQ
Trigger: TTGCGTGTGAAGTGTGTGGCAAGGCCTTTGCCATCT...TCTGGAGTCCTTGATATGTAAAGGGCACTTCCCACTTTCCACCTGTTTGGTGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp CCTCTAGTGGCAAGACACATTACCTTCATCTGCCACAAGAGGCTGGTTTCAAAGTCAAGACACTGGTACTaGCTCTCTTGGATGAGGGTC +
Preference number: 4 (lower is better)
Translates to: PLVARHITFICHKRLVSKSRHWY*LSWMRV
Trigger: GACCCTCATCCAAGAGAGCCAGTACCAGTGTCTTGA...CTTTGAAACCAGCCTCTTGTGGCAGATGAAGGTAATGTGTCTTGCCACTAGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp TACAGAACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTACACGGGTTTATCCATAGAGCTGGTTaGACTCAGAGCAGACATAGC +
Preference number: 4 (lower is better)
Translates to: YRTHKVVERRGVHYVHGFIHRAG*TQSRHS
Trigger: GCTATGTCTGCTCTGAGTGCAACCAGCTCTATGGAT...AAACCCGTGTACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGTTCTGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp AAATTAGTTAAAATTAGTTACAGAACTCATAAGGTGGTGGAGAGGAGAGGGGTAGCTTCTTGCACTCACTaGACTCCGGACCCCGACGCC +
Preference number: 4 (lower is better)
Translates to: KLVKISYRTHKVVERRGVASCTH*TPDPDA
Trigger: GGCGTCGGGGTCCGGAGTGCAGTGAGTGCAAGAAGC...TACCCCTCTCCTCTCCACCACCTTATGAGTTCTGTAACTAATTTTAACTAATTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp AAAATTAGTTACAGAACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTAGATGCGGCGATGTTCTaGCAGACGCATGGAGATGGC +
Preference number: 4 (lower is better)
Translates to: KISYRTHKVVERRGVHYVDAAMF*QTHGDG
Trigger: GCCATCTCCATGCGTCTGGCAGAACATCGCCGCATC...TACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGTTCTGTAACTAATTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp GTTAAAATTAGTTACAGAACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATAAGTCAGCGGGCATCTaGAAGAGCTGGGAGCACTCG +
Preference number: 4 (lower is better)
Translates to: VKISYRTHKVVERRGVHYKSAGI*KSWEHS
Trigger: CGAGTGCTCCCAGCTCTTCCAGATGCCCGCTGACTT...ATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGTTCTGTAACTAATTTTAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp AAATTAGTTACAGAACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTACTGCTGCTGTAGCTGGTaGGGTGAGAGAAAGAGCTGG +
Preference number: 4 (lower is better)
Translates to: KLVTELIRWWRGEGYTMYCCCSW*GERKSW
Trigger: CCAGCTCTTTCTCTCACCCCACCAGCTACAGCAGCA...GTACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGTTCTGTAACTAATTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp AAATTAGTTACAGAACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTACCTCCTCTGGTGGAACTaGTGTTGTGGGCAAAGGGAC +
Preference number: 4 (lower is better)
Translates to: KLVTELIRWWRGEGYTMYLLWWN*CCGQRD
Trigger: GTCCCTTTGCCCACAACACCAGTTCCACCAGAGGAG...GTACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGTTCTGTAACTAATTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp AAATTAGTTACAGAACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTACAATAGCAGGCTCCTCTaGTGGAACTGGTGTTGTGGG +
Preference number: 4 (lower is better)
Translates to: KLVTELIRWWRGEGYTMYNSRLL*WNWCCG
Trigger: CCCACAACACCAGTTCCACCAGAGGAGCCTGCTATT...GTACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGTTCTGTAACTAATTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp AAAATTAGTTACAGAACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTAGGTCTCTGCAGGGGCTaGCTCAGGAAAGCTAATAGC +
Preference number: 4 (lower is better)
Translates to: KISYRTHKVVERRGVHYVGLCRG*LRKANS
Trigger: GCTATTAGCTTTCCTGAGCCAGCCCCTGCAGAGACC...TACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGTTCTGTAACTAATTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR TCA 90 bp AAATTAGTTAAAATTAGTTACAGAACTCATAAGGTGGTGGAGAGGAGAGGGGTAAAAACACCCTCCCGGTaGCTCCGAAGGTGCTGCTGT +
Preference number: 4 (lower is better)
Translates to: KLVKISYRTHKVVERRGVKTPSR*LRRCCC
Trigger: ACAGCAGCACCTTCGGAGTCACCGGGAGGGTGTTTT...TACCCCTCTCCTCTCCACCACCTTATGAGTTCTGTAACTAATTTTAACTAATTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp GTTAAAATTAGTTACAGAACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATCTATGGTCACCAAGGTaGTGGTCCAGACTAGAAGGG +
Preference number: 4 (lower is better)
Translates to: VKISYRTHKVVERRGVHYLWSPR*WSRLEG
Trigger: CCCTTCTAGTCTGGACCAGCACCTTGGTGACCATAG...ATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGTTCTGTAACTAATTTTAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp AAAATTAGTTACAGAACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTATGGTGGGTCTTGCGGTaGTTCCAGAGATTGGAGAAG +
Preference number: 4 (lower is better)
Translates to: KISYRTHKVVERRGVHYVWWVLR*FQRLEK
Trigger: CTTCTCCAATCTCTGGAAGCACCGCAAGACCCACCA...TACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGTTCTGTAACTAATTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp AAATTAGTTAAAATTAGTTACAGAACTCATAAGGTGGTGGAGAGGAGAGGGGTATTCAGGTGTAGCTCCTaGTGCTCCAGGAGCTGGCTG +
Preference number: 4 (lower is better)
Translates to: KLVKISYRTHKVVERRGVFRCSS*CSRSWL
Trigger: CAGCCAGCTCCTGGAGCACCAGGAGCTACACCTGAA...TACCCCTCTCCTCTCCACCACCTTATGAGTTCTGTAACTAATTTTAACTAATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp AAAATTAGTTACAGAACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTAGGTGCTTCCAGAGATTaGAGAAGGAACGGTAGCTCT +
Preference number: 4 (lower is better)
Translates to: KISYRTHKVVERRGVHYVGASRD*RRNGSS
Trigger: AGAGCTACCGTTCCTTCTCCAATCTCTGGAAGCACC...TACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGTTCTGTAACTAATTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp AAATTAGTTAAAATTAGTTACAGAACTCATAAGGTGGTGGAGAGGAGAGGGGTATGGTCACCAAGGTGCTaGTCCAGACTAGAAGGGCTA +
Preference number: 4 (lower is better)
Translates to: KLVKISYRTHKVVERRGVWSPRC*SRLEGL
Trigger: TAGCCCTTCTAGTCTGGACCAGCACCTTGGTGACCA...TACCCCTCTCCTCTCCACCACCTTATGAGTTCTGTAACTAATTTTAACTAATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR GCA 90 bp GAATCATGTTATATAGCTAGGCCTGACAAAAAGCATAAATGTCCAATTCAGTCTCAGAGCCCACTTTCTTaGCACAGGTCCCACACTCAA +
Preference number: 4 (lower is better)
Translates to: ESCYIARPDKKHKCPIQSQSPLS*HRSHTQ
Trigger: TTGAGTGTGGGACCTGTGGCAAGAAAGTGGGCTCTG...AGACTGAATTGGACATTTATGCTTTTTGTCAGGCCTAGCTATATAACATGATTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp GAATCATGTTATATAGCTAGGCCTGACAAAAAGCATAAATGTCCAATTCAGTCTAATAGCAGGCTCCTCTaGTGGAACTGGTGTTGTGGG +
Preference number: 4 (lower is better)
Translates to: ESCYIARPDKKHKCPIQSNSRLL*WNWCCG
Trigger: CCCACAACACCAGTTCCACCAGAGGAGCCTGCTATT...AGACTGAATTGGACATTTATGCTTTTTGTCAGGCCTAGCTATATAACATGATTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS-3UTR CCA 90 bp AAATTAGTTAAAATTAGTTACAGAACTCATAAGGTGGTGGAGAGGAGAGGGGTAGGTGCTTCCAGAGATTaGAGAAGGAACGGTAGCTCT +
Preference number: 4 (lower is better)
Translates to: KLVKISYRTHKVVERRGVGASRD*RRNGSS
Trigger: AGAGCTACCGTTCCTTCTCCAATCTCTGGAAGCACC...TACCCCTCTCCTCTCCACCACCTTATGAGTTCTGTAACTAATTTTAACTAATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR TCA 90 bp GAATCATGTTATATAGCTAGGCCTGACAAAAAGCATAAATGTCCAATTCAGTCTTTCTGCTTTTCGGTATaGATGTTCCACAGCCACTCG +
Preference number: 4 (lower is better)
Translates to: ESCYIARPDKKHKCPIQSFCFSV*MFHSHS
Trigger: CGAGTGGCTGTGGAACATTCATACCGAAAAGCAGAA...AGACTGAATTGGACATTTATGCTTTTTGTCAGGCCTAGCTATATAACATGATTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS CCA 90 bp CCCACTTTCTTGCCACAGGTCCCACACTCAAAGCGCCGTGGGGCCTaGGCAGCAGCGGCCGCGCAGCGATGCTCACGGAGCCGCAGTGAC +
Preference number: 5 (lower is better)
Translates to: PTFLPQVPHSKRRGA*AAAAAQRCSRSRSD
Trigger: GTCACTGCGGCTCCGTGAGCATCGCTGCGCGGCCGCTGCTGCCCAGGCCCCACGGCGCTTTGAGTGTGGGACCTGTGGCAAGAAAGTGGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CCA 90 bp AGCAGAGCCCACTTTCTTGCCACAGGTCCCACACTCAAAGCGCCGTaGGGCCTGGGCAGCAGCGGCCGCGCAGCGATGCTCACGGAGCCG +
Preference number: 5 (lower is better)
Translates to: SRAHFLATGPTLKAP*GLGSSGRAAMLTEP
Trigger: CGGCTCCGTGAGCATCGCTGCGCGGCCGCTGCTGCCCAGGCCCCACGGCGCTTTGAGTGTGGGACCTGTGGCAAGAAAGTGGGCTCTGCT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CCA 90 bp GCAGGCTCCGCAGCCTCCGGGACAGGAGCAGGGAAGTGGGTGGCCTaGTGCTCCAGGAAGTCAGCGGGCATCTGGAAGAGCTGGGAGCAC +
Preference number: 5 (lower is better)
Translates to: AGSAASGTGAGKWVA*CSRKSAGIWKSWEH
Trigger: GTGCTCCCAGCTCTTCCAGATGCCCGCTGACTTCCTGGAGCACCAGGCCACCCACTTCCCTGCTCCTGTCCCGGAGGCTGCGGAGCCTGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CCA 90 bp GTGTGGCAGGCTCCGCAGCCTCCGGGACAGGAGCAGGGAAGTGGGTaGCCTGGTGCTCCAGGAAGTCAGCGGGCATCTGGAAGAGCTGGG +
Preference number: 5 (lower is better)
Translates to: VWQAPQPPGQEQGSG*PGAPGSQRASGRAG
Trigger: CCCAGCTCTTCCAGATGCCCGCTGACTTCCTGGAGCACCAGGCCACCCACTTCCCTGCTCCTGTCCCGGAGGCTGCGGAGCCTGCCACAC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS GCA 90 bp GGGCGGCTTCATGTGCCTGCAGGCGAGCAGCAGAGCCCACTTTCTTaGCACAGGTCCCACACTCAAAGCGCCGTGGGGCCTGGGCAGCAG +
Preference number: 5 (lower is better)
Translates to: GRLHVPAGEQQSPLS*HRSHTQSAVGPGQQ
Trigger: CTGCTGCCCAGGCCCCACGGCGCTTTGAGTGTGGGACCTGTGGCAAGAAAGTGGGCTCTGCTGCTCGCCTGCAGGCACATGAAGCCGCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CCA 90 bp CTGGTGTGCGAGTGGCTCTCGAGGCCCGGGGAGCAGGAGGCTCCTTaGCTAAGACCTCTCCAGGACCCGCAGCAGCATGGGCGGCTTCAT +
Preference number: 5 (lower is better)
Translates to: LVCEWLSRPGEQEAP*LRPLQDPQQHGRLH
Trigger: ATGAAGCCGCCCATGCTGCTGCGGGTCCTGGAGAGGTCTTAGCCAAGGAGCCTCCTGCTCCCCGGGCCTCGAGAGCCACTCGCACACCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CCA 90 bp CCCACAGCAGCCTCCGCCTCTGCCAGCTGCTGTCGGACGGCCGCCTaGTGTTGCTGCTGGTGGGTCTTGCGGTGCTTCCAGAGATTGGAG +
Preference number: 5 (lower is better)
Translates to: PTAASASASCCRTAA*CCCWWVLRCFQRLE
Trigger: CTCCAATCTCTGGAAGCACCGCAAGACCCACCAGCAGCAACACCAGGCGGCCGTCCGACAGCAGCTGGCAGAGGCGGAGGCTGCTGTGGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS GCA 90 bp GCCTCCGCCTCTGCCAGCTGCTGTCGGACGGCCGCCTGGTGTTGCTaGTGGTGGGTCTTGCGGTGCTTCCAGAGATTGGAGAAGGAACGG +
Preference number: 5 (lower is better)
Translates to: ASASASCCRTAAWCC*WWVLRCFQRLEKER
Trigger: CCGTTCCTTCTCCAATCTCTGGAAGCACCGCAAGACCCACCAGCAGCAACACCAGGCGGCCGTCCGACAGCAGCTGGCAGAGGCGGAGGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CCA 90 bp CGGAGCACTTGTAGAGGAGCAGCTCCACTTCTGTCACCATCTCGGTaGTGGCGGCCACAGACGGAACGGCCGCCCCCTCCCCACCCTCTT +
Preference number: 5 (lower is better)
Translates to: RSTCRGAAPLLSPSR*WRPQTERPPPPHPL
Trigger: AAGAGGGTGGGGAGGGGGCGGCCGTTCCGTCTGTGGCCGCCACCACCGAGATGGTGACAGAAGTGGAGCTGCTCCTCTACAAGTGCTCCG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS GCA 90 bp GCAGCCTCCGCCTCTGCCAGCTGCTGTCGGACGGCCGCCTGGTGTTaGTGCTGGTGGGTCTTGCGGTGCTTCCAGAGATTGGAGAAGGAA +
Preference number: 5 (lower is better)
Translates to: AASASASCCRTAAWC*CWWVLRCFQRLEKE
Trigger: TTCCTTCTCCAATCTCTGGAAGCACCGCAAGACCCACCAGCAGCAACACCAGGCGGCCGTCCGACAGCAGCTGGCAGAGGCGGAGGCTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CCA 90 bp TTCCACAGCCACTCGAGCCTGGCCCACAGGAGGGCCCAAAACAACTaGGGACCCCAAGACGACAGGAGCAGGAGCCTTGTTGGGCGTGGC +
Preference number: 5 (lower is better)
Translates to: FHSHSSLAHRRAQNN*GPQDDRSRSLVGRG
Trigger: GCCACGCCCAACAAGGCTCCTGCTCCTGTCGTCTTGGGGTCCCCAGTTGTTTTGGGCCCTCCTGTGGGCCAGGCTCGAGTGGCTGTGGAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CCA 90 bp AGCACTTGTAGAGGAGCAGCTCCACTTCTGTCACCATCTCGGTGGTaGCGGCCACAGACGGAACGGCCGCCCCCTCCCCACCCTCTTCTG +
Preference number: 5 (lower is better)
Translates to: STCRGAAPLLSPSRW*RPQTERPPPPHPLL
Trigger: CAGAAGAGGGTGGGGAGGGGGCGGCCGTTCCGTCTGTGGCCGCCACCACCGAGATGGTGACAGAAGTGGAGCTGCTCCTCTACAAGTGCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CCA 90 bp GCAGGAGGCTCCTTGGCTAAGACCTCTCCAGGACCCGCAGCAGCATaGGCGGCTTCATGTGCCTGCAGGCGAGCAGCAGAGCCCACTTTC +
Preference number: 5 (lower is better)
Translates to: AGGSLAKTSPGPAAA*AASCACRRAAEPTF
Trigger: GAAAGTGGGCTCTGCTGCTCGCCTGCAGGCACATGAAGCCGCCCATGCTGCTGCGGGTCCTGGAGAGGTCTTAGCCAAGGAGCCTCCTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS GCA 90 bp GCCACTGTGACTCCAGGGTCAGCCACGCCCACCAGCTCAAAGTGCTaGTGGGGCACGTGGGAGTTCTGGTGCACAAGCACCTCCTCCAAG +
Preference number: 5 (lower is better)
Translates to: ATVTPGSATPTSSKC*WGTWEFWCTSTSSK
Trigger: CTTGGAGGAGGTGCTTGTGCACCAGAACTCCCACGTGCCCCAGCAGCACTTTGAGCTGGTGGGCGTGGCTGACCCTGGAGTCACAGTGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS GCA 90 bp AAGACCTCTCCAGGACCCGCAGCAGCATGGGCGGCTTCATGTGCCTaGAGGCGAGCAGCAGAGCCCACTTTCTTGCCACAGGTCCCACAC +
Preference number: 5 (lower is better)
Translates to: KTSPGPAAAWAASCA*RRAAEPTFLPQVPH
Trigger: GTGTGGGACCTGTGGCAAGAAAGTGGGCTCTGCTGCTCGCCTGCAGGCACATGAAGCCGCCCATGCTGCTGCGGGTCCTGGAGAGGTCTT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS TCA 90 bp CACCTGTGTGGATGCGCCGATGGACCTGTAGTGACGTCTCTGTGCTaGAGAGCTTCTTGCACTCACTGCACTCCGGACCCCGACGCCGGG +
Preference number: 5 (lower is better)
Translates to: HLCGCADGPVVTSLC*RASCTHCTPDPDAG
Trigger: CCCGGCGTCGGGGTCCGGAGTGCAGTGAGTGCAAGAAGCTCTTCAGCACAGAGACGTCACTACAGGTCCATCGGCGCATCCACACAGGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CCA 90 bp ACAAAGGTCTTCCCACAGGGACACGAATGCAGAGGATTCGGGGTATaGGCTCGCCGGTGGGCCAGGAGGAGGGCTTCGGTGCCAAAGGCT +
Preference number: 5 (lower is better)
Translates to: TKVFPQGHECRGFGV*ARRWARRRASVPKA
Trigger: AGCCTTTGGCACCGAAGCCCTCCTCCTGGCCCACCGGCGAGCCCATACCCCGAATCCTCTGCATTCGTGTCCCTGTGGGAAGACCTTTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS GCA 90 bp ATGCTGCACTTATGGCGCCGCTCTAGCCGGTGCACAAAACGCTGGTaGCGGGTCAGCTGCAACGCCTTACCAAACTCCCGGCTACACAGG +
Preference number: 5 (lower is better)
Translates to: MLHLWRRSSRCTKRW*RVSCNALPNSRLHR
Trigger: CCTGTGTAGCCGGGAGTTTGGTAAGGCGTTGCAGCTGACCCGGCACCAGCGTTTTGTGCACCGGCTAGAGCGGCGCCATAAGTGCAGCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CCA 90 bp ACTGTGACTCCAGGGTCAGCCACGCCCACCAGCTCAAAGTGCTGCTaGGGCACGTGGGAGTTCTGGTGCACAAGCACCTCCTCCAAGGAT +
Preference number: 5 (lower is better)
Translates to: TVTPGSATPTSSKCC*GTWEFWCTSTSSKD
Trigger: ATCCTTGGAGGAGGTGCTTGTGCACCAGAACTCCCACGTGCCCCAGCAGCACTTTGAGCTGGTGGGCGTGGCTGACCCTGGAGTCACAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CCA 90 bp AGGGGCTGGCTCAGGAAAGCTAATAGCAGGCTCCTCTGGTGGAACTaGTGTTGTGGGCAAAGGGACACCTCCTGCTCCGTGGGTACGCCG +
Preference number: 5 (lower is better)
Translates to: RGWLRKANSRLLWWN*CCGQRDTSCSVGTP
Trigger: CGGCGTACCCACGGAGCAGGAGGTGTCCCTTTGCCCACAACACCAGTTCCACCAGAGGAGCCTGCTATTAGCTTTCCTGAGCCAGCCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS GCA 90 bp TGTAGCTCCTGGTGCTCCAGGAGCTGGCTGGGGGACAGGAGCAGTTaGCCACACTCAAGACACTGGTACTGGCTCTCTTGGATGAGGGTC +
Preference number: 5 (lower is better)
Translates to: CSSWCSRSWLGDRSS*PHSRHWYWLSWMRV
Trigger: GACCCTCATCCAAGAGAGCCAGTACCAGTGTCTTGAGTGTGGGCAACTGCTCCTGTCCCCCAGCCAGCTCCTGGAGCACCAGGAGCTACA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS GCA 90 bp CCCAAGACGACAGGAGCAGGAGCCTTGTTGGGCGTGGCTCTGAGATaGGTCTGGCGATGGCTAAGCCACATCTCTTGGCTGGCGAACAGA +
Preference number: 5 (lower is better)
Translates to: PKTTGAGALLGVALR*VWRWLSHISWLANR
Trigger: TCTGTTCGCCAGCCAAGAGATGTGGCTTAGCCATCGCCAGACGCATCTCAGAGCCACGCCCAACAAGGCTCCTGCTCCTGTCGTCTTGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CCA 90 bp GTGCCATCATCTTCAGGTGTAGCTCCTGGTGCTCCAGGAGCTGGCTaGGGGACAGGAGCAGTTGCCCACACTCAAGACACTGGTACTGGC +
Preference number: 5 (lower is better)
Translates to: VPSSSGVAPGAPGAG*GTGAVAHTQDTGTG
Trigger: GCCAGTACCAGTGTCTTGAGTGTGGGCAACTGCTCCTGTCCCCCAGCCAGCTCCTGGAGCACCAGGAGCTACACCTGAAGATGATGGCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CCA 90 bp TGCGGTGCCATCATCTTCAGGTGTAGCTCCTGGTGCTCCAGGAGCTaGCTGGGGGACAGGAGCAGTTGCCCACACTCAAGACACTGGTAC +
Preference number: 5 (lower is better)
Translates to: CGAIIFRCSSWCSRS*LGDRSSCPHSRHWY
Trigger: GTACCAGTGTCTTGAGTGTGGGCAACTGCTCCTGTCCCCCAGCCAGCTCCTGGAGCACCAGGAGCTACACCTGAAGATGATGGCACCGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CCA 90 bp GGAGCAGGAGCCTTGTTGGGCGTGGCTCTGAGATGCGTCTGGCGATaGCTAAGCCACATCTCTTGGCTGGCGAACAGAGCCTTACAGTCC +
Preference number: 5 (lower is better)
Translates to: GAGALLGVALRCVWR*LSHISWLANRALQS
Trigger: GGACTGTAAGGCTCTGTTCGCCAGCCAAGAGATGTGGCTTAGCCATCGCCAGACGCATCTCAGAGCCACGCCCAACAAGGCTCCTGCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CCA 90 bp CTCTGCAGGGGCTGGCTCAGGAAAGCTAATAGCAGGCTCCTCTGGTaGAACTGGTGTTGTGGGCAAAGGGACACCTCCTGCTCCGTGGGT +
Preference number: 5 (lower is better)
Translates to: LCRGWLRKANSRLLW*NWCCGQRDTSCSVG
Trigger: ACCCACGGAGCAGGAGGTGTCCCTTTGCCCACAACACCAGTTCCACCAGAGGAGCCTGCTATTAGCTTTCCTGAGCCAGCCCCTGCAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CCA 90 bp CAAATGCTGCACTTATGGCGCCGCTCTAGCCGGTGCACAAAACGCTaGTGCCGGGTCAGCTGCAACGCCTTACCAAACTCCCGGCTACAC +
Preference number: 5 (lower is better)
Translates to: QMLHLWRRSSRCTKR*CRVSCNALPNSRLH
Trigger: GTGTAGCCGGGAGTTTGGTAAGGCGTTGCAGCTGACCCGGCACCAGCGTTTTGTGCACCGGCTAGAGCGGCGCCATAAGTGCAGCATTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CAA 90 bp ACTATGTACACGGGTTTAAAGGGGTTGGTGGAGGGCCTTCAGCACCAGTGGGGCGGAGCAGGAGCCTTGTaGGGCGTGGCTCTGAGATGC +
Preference number: 5 (lower is better)
Translates to: TMYTGLKGLVEGLQHQWGGAGAL*GVALRC
Trigger: GCATCTCAGAGCCACGCCCAACAAGGCTCCTGCTCC...GCCCCACTGGTGCTGAAGGCCCTCCACCAACCCCTTTAAACCCGTGTACATAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS GCA 90 bp AGGAACTTGGTGAGGTTAACAAAGGTCTTCCCACAGGGACACGAATaGAGAGGATTCGGGGTATGGGCTCGCCGGTGGGCCAGGAGGAGG +
Preference number: 5 (lower is better)
Translates to: RNLVRLTKVFPQGHE*RGFGVWARRWARRR
Trigger: CCTCCTCCTGGCCCACCGGCGAGCCCATACCCCGAATCCTCTGCATTCGTGTCCCTGTGGGAAGACCTTTGTTAACCTCACCAAGTTCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CCA 90 bp ACGACAGGAGCAGGAGCCTTGTTGGGCGTGGCTCTGAGATGCGTCTaGCGATGGCTAAGCCACATCTCTTGGCTGGCGAACAGAGCCTTA +
Preference number: 5 (lower is better)
Translates to: TTGAGALLGVALRCV*RWLSHISWLANRAL
Trigger: TAAGGCTCTGTTCGCCAGCCAAGAGATGTGGCTTAGCCATCGCCAGACGCATCTCAGAGCCACGCCCAACAAGGCTCCTGCTCCTGTCGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CCA 90 bp CACTGTTGTTCCTCCTTGGCTTCCGTCCCCTGCGGTCTCGCCCAATaGCCTCCCCATTTCGCAGCTCATTCCGCAGCTCATAACTGTGAT +
Preference number: 5 (lower is better)
Translates to: HCCSSLASVPCGLAQ*PPHFAAHSAAHNCD
Trigger: ATCACAGTTATGAGCTGCGGAATGAGCTGCGAAATGGGGAGGCCATTGGGCGAGACCGCAGGGGACGGAAGCCAAGGAGGAACAACAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS TCA 90 bp GGAGCAGTTGCCCACACTCAAGACACTGGTACTGGCTCTCTTGGATaGGGGTCTGATATAGGCCTGTGCCTGAAGCAGCCTCTGTGGCCA +
Preference number: 5 (lower is better)
Translates to: GAVAHTQDTGTGSLG*GSDIGLCLKQPLWP
Trigger: TGGCCACAGAGGCTGCTTCAGGCACAGGCCTATATCAGACCCTCATCCAAGAGAGCCAGTACCAGTGTCTTGAGTGTGGGCAACTGCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS GCA 90 bp AACATCTTGCCACAAATGCTGCACTTATGGCGCCGCTCTAGCCGGTaGACAAAACGCTGGTGCCGGGTCAGCTGCAACGCCTTACCAAAC +
Preference number: 5 (lower is better)
Translates to: NILPQMLHLWRRSSR*TKRWCRVSCNALPN
Trigger: GTTTGGTAAGGCGTTGCAGCTGACCCGGCACCAGCGTTTTGTGCACCGGCTAGAGCGGCGCCATAAGTGCAGCATTTGTGGCAAGATGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CCA 90 bp GTGAGAGAAAGAGCTGGTCACAGGCAGAGCAAAATAGTTCCTGGGTaGCCGCCCCACCTGACTCTCCACTGTTGTTCCTCCTTGGCTTCC +
Preference number: 5 (lower is better)
Translates to: VRERAGHRQSKIVPG*PPHLTLHCCSSLAS
Trigger: GGAAGCCAAGGAGGAACAACAGTGGAGAGTCAGGTGGGGCGGCCACCCAGGAACTATTTTGCTCTGCCTGTGACCAGCTCTTTCTCTCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CAA 90 bp ACTATGTACACGGGTTTAAAGGGGTTGGTGGAGGGCCTTCAGCACCAGTGGGGCCCTGACTCTCCACTGTaGTTCCTCCTTGGCTTCCGT +
Preference number: 5 (lower is better)
Translates to: TMYTGLKGLVEGLQHQWGPDSPL*FLLGFR
Trigger: ACGGAAGCCAAGGAGGAACAACAGTGGAGAGTCAGG...GCCCCACTGGTGCTGAAGGCCCTCCACCAACCCCTTTAAACCCGTGTACATAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CAA 90 bp AGGACCAACAAGCTCAAAGCCTGCTTAGGATATAGTGAGTCTGAGGCCTGGACACGGTGGCGGGCCAGGTaGGCTGGTGAGTTGAAAGGC +
Preference number: 5 (lower is better)
Translates to: RTNKLKACLGYSESEAWTRWRAR*AGELKG
Trigger: GCCTTTCAACTCACCAGCCAACCTGGCCCGCCACCG...TGTCCAGGCCTCAGACTCACTATATCCTAAGCAGGCTTTGAGCTTGTTGGTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS TCA 90 bp TGCCCACACTCAAGACACTGGTACTGGCTCTCTTGGATGAGGGTCTaGTATAGGCCTGTGCCTGAAGCAGCCTCTGTGGCCACTGTGACT +
Preference number: 5 (lower is better)
Translates to: CPHSRHWYWLSWMRV*YRPVPEAASVATVT
Trigger: AGTCACAGTGGCCACAGAGGCTGCTTCAGGCACAGGCCTATATCAGACCCTCATCCAAGAGAGCCAGTACCAGTGTCTTGAGTGTGGGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CAA 90 bp GCAAGACACATTACCTTCATCTGCCACAAGAGGCTGGTTTCAAAGATCCATGCCGGAGCAGGAGCCTTGTaGGGCGTGGCTCTGAGATGC +
Preference number: 5 (lower is better)
Translates to: ARHITFICHKRLVSKIHAGAGAL*GVALRC
Trigger: GCATCTCAGAGCCACGCCCAACAAGGCTCCTGCTCC...GGCATGGATCTTTGAAACCAGCCTCTTGTGGCAGATGAAGGTAATGTGTCTTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS GCA 90 bp AGTTCTGGTGCACAAGCACCTCCTCCAAGGATCCATAGAGCTGGTTaGACTCAGAGCAGACATAGCGGTGCTCAATGTACAGGACCGTCT +
Preference number: 5 (lower is better)
Translates to: SSGAQAPPPRIHRAG*TQSRHSGAQCTGPS
Trigger: AGACGGTCCTGTACATTGAGCACCGCTATGTCTGCTCTGAGTGCAACCAGCTCTATGGATCCTTGGAGGAGGTGCTTGTGCACCAGAACT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CAA 90 bp CTCAAAATAACTCAAGGGCACAGGCCTGTCATCCTAACTACTCAAGGGGCTGTGGCAGAGCCCACTTTCTaGCCACAGGTCCCACACTCA +
Preference number: 5 (lower is better)
Translates to: LKITQGHRPVILTTQGAVAEPTF*PQVPHS
Trigger: TGAGTGTGGGACCTGTGGCAAGAAAGTGGGCTCTGC...CACAGCCCCTTGAGTAGTTAGGATGACAGGCCTGTGCCCTTGAGTTATTTTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS-3UTR CAA 90 bp GGCTGCCTTCTTCTCAATCCAGCAAACTGGACTACCTGCCAAGTTCTATCTGGGGTGCTGAAGAGCTTCTaGCACTCACTGCACTCCGGA +
Preference number: 5 (lower is better)
Translates to: GCLLLNPANWTTCQVLSGVLKSF*HSLHSG
Trigger: TCCGGAGTGCAGTGAGTGCAAGAAGCTCTTCAGCAC...CCCAGATAGAACTTGGCAGGTAGTCCAGTTTGCTGGATTGAGAAGAAGGCAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179556.2
CDS-3UTR CAA 90 bp AGTTACAGAACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTACACGGGTGCTGCTGGTGGGTCTaGCGGTGCTTCCAGAGATTG +
Preference number: 5 (lower is better)
Translates to: SYRTHKVVERRGVHYVHGCCWWV*RCFQRL
Trigger: CAATCTCTGGAAGCACCGCAAGACCCACCAGCAGCA...CCCGTGTACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGTTCTGTAACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CAA 90 bp TACAGAACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTACACGGGTTTGCAGAGCCCACTTTCTaGCCACAGGTCCCACACTCA +
Preference number: 5 (lower is better)
Translates to: YRTHKVVERRGVHYVHGFAEPTF*PQVPHS
Trigger: TGAGTGTGGGACCTGTGGCAAGAAAGTGGGCTCTGC...AAACCCGTGTACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGTTCTGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CAA 90 bp AGTTACAGAACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTACACGGGGAGATGGCAAAGGCCTaGCCACACACTTCACACGCA +
Preference number: 5 (lower is better)
Translates to: SYRTHKVVERRGVHYVHGEMAKA*PHTSHA
Trigger: TGCGTGTGAAGTGTGTGGCAAGGCCTTTGCCATCTC...CCCGTGTACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGTTCTGTAACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CAA 90 bp ATTGACTGCTTCATTTGGAGACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTTGCTGCTGGTGGGTCTaGCGGTGCTTCCAGAGATTG +
Preference number: 5 (lower is better)
Translates to: IDCFIWRPPNRWKVGSALCCWWV*RCFQRL
Trigger: CAATCTCTGGAAGCACCGCAAGACCCACCAGCAGCA...AAGGGCACTTCCCACTTTCCACCTGTTTGGTGGTCTCCAAATGAAGCAGTCAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CAA 90 bp TTATTGACTGCTTCATTTGGAGACCACCAAACAGGTGGAAAGTGGGAAGTGCCCCCTGACTCTCCACTGTaGTTCCTCCTTGGCTTCCGT +
Preference number: 5 (lower is better)
Translates to: LLTASFGDHQTGGKWEVPPDSPL*FLLGFR
Trigger: ACGGAAGCCAAGGAGGAACAACAGTGGAGAGTCAGG...GGGCACTTCCCACTTTCCACCTGTTTGGTGGTCTCCAAATGAAGCAGTCAATAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CAA 90 bp ATTGACTGCTTCATTTGGAGACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTGTGCTGAAGAGCTTCTaGCACTCACTGCACTCCGGA +
Preference number: 5 (lower is better)
Translates to: IDCFIWRPPNRWKVGSALVLKSF*HSLHSG
Trigger: TCCGGAGTGCAGTGAGTGCAAGAAGCTCTTCAGCAC...AAGGGCACTTCCCACTTTCCACCTGTTTGGTGGTCTCCAAATGAAGCAGTCAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CAA 90 bp ACTGCTTCATTTGGAGACCACCAAACAGGTGGAAAGTGGGAAGTGCCCTTTACAGAGATGGCAAAGGCCTaGCCACACACTTCACACGCA +
Preference number: 5 (lower is better)
Translates to: TASFGDHQTGGKWEVPFTEMAKA*PHTSHA
Trigger: TGCGTGTGAAGTGTGTGGCAAGGCCTTTGCCATCTC...TGTAAAGGGCACTTCCCACTTTCCACCTGTTTGGTGGTCTCCAAATGAAGCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CAA 90 bp AAATTAGTTAAAATTAGTTACAGAACTCATAAGGTGGTGGAGAGGAGAGGGGTACGGTGGCGGGCCAGGTaGGCTGGTGAGTTGAAAGGC +
Preference number: 5 (lower is better)
Translates to: KLVKISYRTHKVVERRGVRWRAR*AGELKG
Trigger: GCCTTTCAACTCACCAGCCAACCTGGCCCGCCACCG...TACCCCTCTCCTCTCCACCACCTTATGAGTTCTGTAACTAATTTTAACTAATTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS-3UTR CAA 90 bp AAAATTAGTTACAGAACTCATAAGGTGGTGGAGAGGAGAGGGGTACACTATGTAAGGTTGGCTGGTGAGTaGAAAGGCTTAGAGCAGTCA +
Preference number: 5 (lower is better)
Translates to: KISYRTHKVVERRGVHYVRLAGE*KGLEQS
Trigger: TGACTGCTCTAAGCCTTTCAACTCACCAGCCAACCT...TACATAGTGTACCCCTCTCCTCTCCACCACCTTATGAGTTCTGTAACTAATTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CCA 72 bp GCCTCCGCCTCTGCCAGCTGCTGTCGGACGGCCGCCTaGTGTTGCTGCTGGTGGGTCTTGCGGTGCTTCCAG +
Preference number: 6 (lower is better)
Translates to: ASASASCCRTAA*CCCWWVLRCFQ
Trigger: CTGGAAGCACCGCAAGACCCACCAGCAGCAACACCAGGCGGCCGTCCGACAGCAGCTGGCAGAGGCGGAGGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CCA 72 bp AGAGGAGCAGCTCCACTTCTGTCACCATCTCGGTGGTaGCGGCCACAGACGGAACGGCCGCCCCCTCCCCAC +
Preference number: 6 (lower is better)
Translates to: RGAAPLLSPSRW*RPQTERPPPPH
Trigger: GTGGGGAGGGGGCGGCCGTTCCGTCTGTGGCCGCCACCACCGAGATGGTGACAGAAGTGGAGCTGCTCCTCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CCA 72 bp GAGTGGCTCTCGAGGCCCGGGGAGCAGGAGGCTCCTTaGCTAAGACCTCTCCAGGACCCGCAGCAGCATGGG +
Preference number: 6 (lower is better)
Translates to: EWLSRPGEQEAP*LRPLQDPQQHG
Trigger: CCCATGCTGCTGCGGGTCCTGGAGAGGTCTTAGCCAAGGAGCCTCCTGCTCCCCGGGCCTCGAGAGCCACTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CAA 72 bp CGAGTGGCTCTCGAGGCCCGGGGAGCAGGAGGCTCCTaGGCTAAGACCTCTCCAGGACCCGCAGCAGCATGG +
Preference number: 6 (lower is better)
Translates to: RVALEARGAGGS*AKTSPGPAAAW
Trigger: CCATGCTGCTGCGGGTCCTGGAGAGGTCTTAGCCAAGGAGCCTCCTGCTCCCCGGGCCTCGAGAGCCACTCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CAA 90 bp ACTGGTGTGCGAGTGGCTCTCGAGGCCCGGGGAGCAGGAGGCTCCTaGGCTAAGACCTCTCCAGGACCCGCAGCAGCATGGGCGGCTTCA +
Preference number: 6 (lower is better)
Translates to: TGVRVALEARGAGGS*AKTSPGPAAAWAAS
Trigger: TGAAGCCGCCCATGCTGCTGCGGGTCCTGGAGAGGTCTTAGCCAAGGAGCCTCCTGCTCCCCGGGCCTCGAGAGCCACTCGCACACCAGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CCA 72 bp TGTAGAGGAGCAGCTCCACTTCTGTCACCATCTCGGTaGTGGCGGCCACAGACGGAACGGCCGCCCCCTCCC +
Preference number: 6 (lower is better)
Translates to: CRGAAPLLSPSR*WRPQTERPPPP
Trigger: GGGAGGGGGCGGCCGTTCCGTCTGTGGCCGCCACCACCGAGATGGTGACAGAAGTGGAGCTGCTCCTCTACA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CCA 72 bp GCAGCCTCCGGGACAGGAGCAGGGAAGTGGGTGGCCTaGTGCTCCAGGAAGTCAGCGGGCATCTGGAAGAGC +
Preference number: 6 (lower is better)
Translates to: AASGTGAGKWVA*CSRKSAGIWKS
Trigger: GCTCTTCCAGATGCCCGCTGACTTCCTGGAGCACCAGGCCACCCACTTCCCTGCTCCTGTCCCGGAGGCTGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CAA 90 bp TGGGCGGCTTCATGTGCCTGCAGGCGAGCAGCAGAGCCCACTTTCTaGCCACAGGTCCCACACTCAAAGCGCCGTGGGGCCTGGGCAGCA +
Preference number: 6 (lower is better)
Translates to: WAASCACRRAAEPTF*PQVPHSKRRGAWAA
Trigger: TGCTGCCCAGGCCCCACGGCGCTTTGAGTGTGGGACCTGTGGCAAGAAAGTGGGCTCTGCTGCTCGCCTGCAGGCACATGAAGCCGCCCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS GCA 72 bp CCAGGACCCGCAGCAGCATGGGCGGCTTCATGTGCCTaGAGGCGAGCAGCAGAGCCCACTTTCTTGCCACAG +
Preference number: 6 (lower is better)
Translates to: PGPAAAWAASCA*RRAAEPTFLPQ
Trigger: CTGTGGCAAGAAAGTGGGCTCTGCTGCTCGCCTGCAGGCACATGAAGCCGCCCATGCTGCTGCGGGTCCTGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS GCA 72 bp CTCTCCAGGACCCGCAGCAGCATGGGCGGCTTCATGTaGCTGCAGGCGAGCAGCAGAGCCCACTTTCTTGCC +
Preference number: 6 (lower is better)
Translates to: LSRTRSSMGGFM*LQASSRAHFLA
Trigger: GGCAAGAAAGTGGGCTCTGCTGCTCGCCTGCAGGCACATGAAGCCGCCCATGCTGCTGCGGGTCCTGGAGAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS GCA 72 bp GCCTCTGCCAGCTGCTGTCGGACGGCCGCCTGGTGTTaGTGCTGGTGGGTCTTGCGGTGCTTCCAGAGATTG +
Preference number: 6 (lower is better)
Translates to: ASASCCRTAAWC*CWWVLRCFQRL
Trigger: CAATCTCTGGAAGCACCGCAAGACCCACCAGCAGCAACACCAGGCGGCCGTCCGACAGCAGCTGGCAGAGGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CCA 72 bp CACGAATGCAGAGGATTCGGGGTATGGGCTCGCCGGTaGGCCAGGAGGAGGGCTTCGGTGCCAAAGGCTAGG +
Preference number: 6 (lower is better)
Translates to: HECRGFGVWARR*ARRRASVPKAR
Trigger: CCTAGCCTTTGGCACCGAAGCCCTCCTCCTGGCCCACCGGCGAGCCCATACCCCGAATCCTCTGCATTCGTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CCA 72 bp TTCCCACAGGGACACGAATGCAGAGGATTCGGGGTATaGGCTCGCCGGTGGGCCAGGAGGAGGGCTTCGGTG +
Preference number: 6 (lower is better)
Translates to: FPQGHECRGFGV*ARRWARRRASV
Trigger: CACCGAAGCCCTCCTCCTGGCCCACCGGCGAGCCCATACCCCGAATCCTCTGCATTCGTGTCCCTGTGGGAA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CAA 72 bp TGGCCGCCCCACCTGACTCTCCACTGTTGTTCCTCCTaGGCTTCCGTCCCCTGCGGTCTCGCCCAATGGCCT +
Preference number: 6 (lower is better)
Translates to: WPPHLTLHCCSS*ASVPCGLAQWP
Trigger: AGGCCATTGGGCGAGACCGCAGGGGACGGAAGCCAAGGAGGAACAACAGTGGAGAGTCAGGTGGGGCGGCCA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CAA 72 bp CGCCTCTGCCAGCTGCTGTCGGACGGCCGCCTGGTGTaGCTGCTGGTGGGTCTTGCGGTGCTTCCAGAGATT +
Preference number: 6 (lower is better)
Translates to: RLCQLLSDGRLV*LLVGLAVLPEI
Trigger: AATCTCTGGAAGCACCGCAAGACCCACCAGCAGCAACACCAGGCGGCCGTCCGACAGCAGCTGGCAGAGGCG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CAA 90 bp AGCAGCCTCCGCCTCTGCCAGCTGCTGTCGGACGGCCGCCTGGTGTaGCTGCTGGTGGGTCTTGCGGTGCTTCCAGAGATTGGAGAAGGA +
Preference number: 6 (lower is better)
Translates to: SSLRLCQLLSDGRLV*LLVGLAVLPEIGEG
Trigger: TCCTTCTCCAATCTCTGGAAGCACCGCAAGACCCACCAGCAGCAACACCAGGCGGCCGTCCGACAGCAGCTGGCAGAGGCGGAGGCTGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS GCA 72 bp GTGACTCCAGGGTCAGCCACGCCCACCAGCTCAAAGTaGTGCTGGGGCACGTGGGAGTTCTGGTGCACAAGC +
Preference number: 6 (lower is better)
Translates to: VTPGSATPTSSK*CWGTWEFWCTS
Trigger: GCTTGTGCACCAGAACTCCCACGTGCCCCAGCAGCACTTTGAGCTGGTGGGCGTGGCTGACCCTGGAGTCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS GCA 72 bp CATGTGCCTGCAGGCGAGCAGCAGAGCCCACTTTCTTaGCACAGGTCCCACACTCAAAGCGCCGTGGGGCCT +
Preference number: 6 (lower is better)
Translates to: HVPAGEQQSPLS*HRSHTQSAVGP
Trigger: AGGCCCCACGGCGCTTTGAGTGTGGGACCTGTGGCAAGAAAGTGGGCTCTGCTGCTCGCCTGCAGGCACATG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CCA 72 bp TCCTTGGCTAAGACCTCTCCAGGACCCGCAGCAGCATaGGCGGCTTCATGTGCCTGCAGGCGAGCAGCAGAG +
Preference number: 6 (lower is better)
Translates to: SLAKTSPGPAAA*AASCACRRAAE
Trigger: CTCTGCTGCTCGCCTGCAGGCACATGAAGCCGCCCATGCTGCTGCGGGTCCTGGAGAGGTCTTAGCCAAGGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CCA 72 bp GCCAGCTGCTGTCGGACGGCCGCCTGGTGTTGCTGCTaGTGGGTCTTGCGGTGCTTCCAGAGATTGGAGAAG +
Preference number: 6 (lower is better)
Translates to: ASCCRTAAWCCC*WVLRCFQRLEK
Trigger: CTTCTCCAATCTCTGGAAGCACCGCAAGACCCACCAGCAGCAACACCAGGCGGCCGTCCGACAGCAGCTGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CAA 72 bp TGTGTGAGCCGGTGGCGGGCCAGGTTGGCTGGTGAGTaGAAAGGCTTAGAGCAGTCAGGGCAGGGGAAGGGC +
Preference number: 6 (lower is better)
Translates to: CVSRWRARLAGE*KGLEQSGQGKG
Trigger: GCCCTTCCCCTGCCCTGACTGCTCTAAGCCTTTCAACTCACCAGCCAACCTGGCCCGCCACCGGCTCACACA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CAA 72 bp TCATGTGCCTGCAGGCGAGCAGCAGAGCCCACTTTCTaGCCACAGGTCCCACACTCAAAGCGCCGTGGGGCC +
Preference number: 6 (lower is better)
Translates to: SCACRRAAEPTF*PQVPHSKRRGA
Trigger: GGCCCCACGGCGCTTTGAGTGTGGGACCTGTGGCAAGAAAGTGGGCTCTGCTGCTCGCCTGCAGGCACATGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CAA 90 bp ATGCGCCGATGGACCTGTAGTGACGTCTCTGTGCTGAAGAGCTTCTaGCACTCACTGCACTCCGGACCCCGACGCCGGGCAGGGGCTGCA +
Preference number: 6 (lower is better)
Translates to: MRRWTCSDVSVLKSF*HSLHSGPRRRAGAA
Trigger: TGCAGCCCCTGCCCGGCGTCGGGGTCCGGAGTGCAGTGAGTGCAAGAAGCTCTTCAGCACAGAGACGTCACTACAGGTCCATCGGCGCAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS GCA 72 bp TTATGGCGCCGCTCTAGCCGGTGCACAAAACGCTGGTaGCGGGTCAGCTGCAACGCCTTACCAAACTCCCGG +
Preference number: 6 (lower is better)
Translates to: LWRRSSRCTKRW*RVSCNALPNSR
Trigger: CCGGGAGTTTGGTAAGGCGTTGCAGCTGACCCGGCACCAGCGTTTTGTGCACCGGCTAGAGCGGCGCCATAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS GCA 72 bp CCACAAATGCTGCACTTATGGCGCCGCTCTAGCCGGTaGACAAAACGCTGGTGCCGGGTCAGCTGCAACGCC +
Preference number: 6 (lower is better)
Translates to: PQMLHLWRRSSR*TKRWCRVSCNA
Trigger: GGCGTTGCAGCTGACCCGGCACCAGCGTTTTGTGCACCGGCTAGAGCGGCGCCATAAGTGCAGCATTTGTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CCA 72 bp GCCACGCCCACCAGCTCAAAGTGCTGCTGGGGCACGTaGGAGTTCTGGTGCACAAGCACCTCCTCCAAGGAT +
Preference number: 6 (lower is better)
Translates to: ATPTSSKCCWGT*EFWCTSTSSKD
Trigger: ATCCTTGGAGGAGGTGCTTGTGCACCAGAACTCCCACGTGCCCCAGCAGCACTTTGAGCTGGTGGGCGTGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CCA 72 bp CACTCGAGCCTGGCCCACAGGAGGGCCCAAAACAACTaGGGACCCCAAGACGACAGGAGCAGGAGCCTTGTT +
Preference number: 6 (lower is better)
Translates to: HSSLAHRRAQNN*GPQDDRSRSLV
Trigger: AACAAGGCTCCTGCTCCTGTCGTCTTGGGGTCCCCAGTTGTTTTGGGCCCTCCTGTGGGCCAGGCTCGAGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CCA 72 bp TCCTCCTTGGCTTCCGTCCCCTGCGGTCTCGCCCAATaGCCTCCCCATTTCGCAGCTCATTCCGCAGCTCAT +
Preference number: 6 (lower is better)
Translates to: SSLASVPCGLAQ*PPHFAAHSAAH
Trigger: ATGAGCTGCGGAATGAGCTGCGAAATGGGGAGGCCATTGGGCGAGACCGCAGGGGACGGAAGCCAAGGAGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CAA 72 bp ACAACTGGGGACCCCAAGACGACAGGAGCAGGAGCCTaGTTGGGCGTGGCTCTGAGATGCGTCTGGCGATGG +
Preference number: 6 (lower is better)
Translates to: TTGDPKTTGAGA*LGVALRCVWRW
Trigger: CCATCGCCAGACGCATCTCAGAGCCACGCCCAACAAGGCTCCTGCTCCTGTCGTCTTGGGGTCCCCAGTTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS TCA 72 bp TGTAGGGGTACTCGCCTGTGTGGTGGTAGCGGTGCATaGGCAGGCGATAAGGGCGGTGAAAACGGACTCCGC +
Preference number: 6 (lower is better)
Translates to: CRGTRLCGGSGA*AGDKGGENGLR
Trigger: GCGGAGTCCGTTTTCACCGCCCTTATCGCCTGCTCATGCACCGCTACCACCACACAGGCGAGTACCCCTACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS GCA 72 bp ACTCTCCACTGTTGTTCCTCCTTGGCTTCCGTCCCCTaGGGTCTCGCCCAATGGCCTCCCCATTTCGCAGCT +
Preference number: 6 (lower is better)
Translates to: TLHCCSSLASVP*GLAQWPPHFAA
Trigger: AGCTGCGAAATGGGGAGGCCATTGGGCGAGACCGCAGGGGACGGAAGCCAAGGAGGAACAACAGTGGAGAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS GCA 72 bp TCTAGCCGGTGCACAAAACGCTGGTGCCGGGTCAGCTaGAACGCCTTACCAAACTCCCGGCTACACAGGAGG +
Preference number: 6 (lower is better)
Translates to: SSRCTKRWCRVS*NALPNSRLHRR
Trigger: CCTCCTGTGTAGCCGGGAGTTTGGTAAGGCGTTGCAGCTGACCCGGCACCAGCGTTTTGTGCACCGGCTAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CCA 72 bp GCAGGAGCCTTGTTGGGCGTGGCTCTGAGATGCGTCTaGCGATGGCTAAGCCACATCTCTTGGCTGGCGAAC +
Preference number: 6 (lower is better)
Translates to: AGALLGVALRCV*RWLSHISWLAN
Trigger: GTTCGCCAGCCAAGAGATGTGGCTTAGCCATCGCCAGACGCATCTCAGAGCCACGCCCAACAAGGCTCCTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CCA 72 bp CACTTATGGCGCCGCTCTAGCCGGTGCACAAAACGCTaGTGCCGGGTCAGCTGCAACGCCTTACCAAACTCC +
Preference number: 6 (lower is better)
Translates to: HLWRRSSRCTKR*CRVSCNALPNS
Trigger: GGAGTTTGGTAAGGCGTTGCAGCTGACCCGGCACCAGCGTTTTGTGCACCGGCTAGAGCGGCGCCATAAGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CCA 72 bp AGCTGCTGTCGGACGGCCGCCTGGTGTTGCTGCTGGTaGGTCTTGCGGTGCTTCCAGAGATTGGAGAAGGAA +
Preference number: 6 (lower is better)
Translates to: SCCRTAAWCCCW*VLRCFQRLEKE
Trigger: TTCCTTCTCCAATCTCTGGAAGCACCGCAAGACCCACCAGCAGCAACACCAGGCGGCCGTCCGACAGCAGCT
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CAA 72 bp TGGACCTGTAGTGACGTCTCTGTGCTGAAGAGCTTCTaGCACTCACTGCACTCCGGACCCCGACGCCGGGCA +
Preference number: 6 (lower is better)
Translates to: WTCSDVSVLKSF*HSLHSGPRRRA
Trigger: TGCCCGGCGTCGGGGTCCGGAGTGCAGTGAGTGCAAGAAGCTCTTCAGCACAGAGACGTCACTACAGGTCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS TCA 72 bp GGATGCGCCGATGGACCTGTAGTGACGTCTCTGTGCTaGAGAGCTTCTTGCACTCACTGCACTCCGGACCCC +
Preference number: 6 (lower is better)
Translates to: GCADGPVVTSLC*RASCTHCTPDP
Trigger: GGGGTCCGGAGTGCAGTGAGTGCAAGAAGCTCTTCAGCACAGAGACGTCACTACAGGTCCATCGGCGCATCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS GCA 72 bp ACAGGAGCAGGAGCCTTGTTGGGCGTGGCTCTGAGATaGGTCTGGCGATGGCTAAGCCACATCTCTTGGCTG +
Preference number: 6 (lower is better)
Translates to: TGAGALLGVALR*VWRWLSHISWL
Trigger: CAGCCAAGAGATGTGGCTTAGCCATCGCCAGACGCATCTCAGAGCCACGCCCAACAAGGCTCCTGCTCCTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS GCA 72 bp GTGAGGTTAACAAAGGTCTTCCCACAGGGACACGAATaGAGAGGATTCGGGGTATGGGCTCGCCGGTGGGCC +
Preference number: 6 (lower is better)
Translates to: VRLTKVFPQGHE*RGFGVWARRWA
Trigger: GGCCCACCGGCGAGCCCATACCCCGAATCCTCTGCATTCGTGTCCCTGTGGGAAGACCTTTGTTAACCTCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS GCA 72 bp GGTGCTTCCAGAGATTGGAGAAGGAACGGTAGCTCTTaGCACAGTCAGGACAGGAGTAGGGTCGCTCACCCG +
Preference number: 6 (lower is better)
Translates to: GASRDWRRNGSS*HSQDRSRVAHP
Trigger: CGGGTGAGCGACCCTACTCCTGTCCTGACTGTGGCAAGAGCTACCGTTCCTTCTCCAATCTCTGGAAGCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CCA 72 bp AGAGCTGGTCACAGGCAGAGCAAAATAGTTCCTGGGTaGCCGCCCCACCTGACTCTCCACTGTTGTTCCTCC +
Preference number: 6 (lower is better)
Translates to: RAGHRQSKIVPG*PPHLTLHCCSS
Trigger: GGAGGAACAACAGTGGAGAGTCAGGTGGGGCGGCCACCCAGGAACTATTTTGCTCTGCCTGTGACCAGCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CCA 72 bp GGCTGGCTCAGGAAAGCTAATAGCAGGCTCCTCTGGTaGAACTGGTGTTGTGGGCAAAGGGACACCTCCTGC +
Preference number: 6 (lower is better)
Translates to: GWLRKANSRLLW*NWCCGQRDTSC
Trigger: GCAGGAGGTGTCCCTTTGCCCACAACACCAGTTCCACCAGAGGAGCCTGCTATTAGCTTTCCTGAGCCAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CCA 72 bp AGGGGCTGGCTCAGGAAAGCTAATAGCAGGCTCCTCTaGTGGAACTGGTGTTGTGGGCAAAGGGACACCTCC +
Preference number: 6 (lower is better)
Translates to: RGWLRKANSRLL*WNWCCGQRDTS
Trigger: GGAGGTGTCCCTTTGCCCACAACACCAGTTCCACCAGAGGAGCCTGCTATTAGCTTTCCTGAGCCAGCCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CAA 90 bp GGGCGTGGCTCTGAGATGCGTCTGGCGATGGCTAAGCCACATCTCTaGGCTGGCGAACAGAGCCTTACAGTCCACACACTCATAGTGGAT +
Preference number: 6 (lower is better)
Translates to: GRGSEMRLAMAKPHL*AGEQSLTVHTLIVD
Trigger: ATCCACTATGAGTGTGTGGACTGTAAGGCTCTGTTCGCCAGCCAAGAGATGTGGCTTAGCCATCGCCAGACGCATCTCAGAGCCACGCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CCA 72 bp CTCAGGAAAGCTAATAGCAGGCTCCTCTGGTGGAACTaGTGTTGTGGGCAAAGGGACACCTCCTGCTCCGTG +
Preference number: 6 (lower is better)
Translates to: LRKANSRLLWWN*CCGQRDTSCSV
Trigger: CACGGAGCAGGAGGTGTCCCTTTGCCCACAACACCAGTTCCACCAGAGGAGCCTGCTATTAGCTTTCCTGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CCA 72 bp GGACCCCATCAGCTTCAGCTAGAGGGTAGATCTCAATaGCCTCCACAAGGGGCAGAGCCTCCACTGCAGTTT +
Preference number: 6 (lower is better)
Translates to: GPHQLQLEGRSQ*PPQGAEPPLQF
Trigger: AAACTGCAGTGGAGGCTCTGCCCCTTGTGGAGGCCATTGAGATCTACCCTCTAGCTGAAGCTGATGGGGTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS TCA 72 bp GCCCACACTCAAGACACTGGTACTGGCTCTCTTGGATaGGGGTCTGATATAGGCCTGTGCCTGAAGCAGCCT +
Preference number: 6 (lower is better)
Translates to: AHTQDTGTGSLG*GSDIGLCLKQP
Trigger: AGGCTGCTTCAGGCACAGGCCTATATCAGACCCTCATCCAAGAGAGCCAGTACCAGTGTCTTGAGTGTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CCA 72 bp CTGAGATGCGTCTGGCGATGGCTAAGCCACATCTCTTaGCTGGCGAACAGAGCCTTACAGTCCACACACTCA +
Preference number: 6 (lower is better)
Translates to: LRCVWRWLSHIS*LANRALQSTHS
Trigger: TGAGTGTGTGGACTGTAAGGCTCTGTTCGCCAGCCAAGAGATGTGGCTTAGCCATCGCCAGACGCATCTCAG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CCA 72 bp AGAAAGAGCTGGTCACAGGCAGAGCAAAATAGTTCCTaGGTGGCCGCCCCACCTGACTCTCCACTGTTGTTC +
Preference number: 6 (lower is better)
Translates to: RKSWSQAEQNSS*VAAPPDSPLLF
Trigger: GAACAACAGTGGAGAGTCAGGTGGGGCGGCCACCCAGGAACTATTTTGCTCTGCCTGTGACCAGCTCTTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CAA 72 bp TCTGAGATGCGTCTGGCGATGGCTAAGCCACATCTCTaGGCTGGCGAACAGAGCCTTACAGTCCACACACTC +
Preference number: 6 (lower is better)
Translates to: SEMRLAMAKPHL*AGEQSLTVHTL
Trigger: GAGTGTGTGGACTGTAAGGCTCTGTTCGCCAGCCAAGAGATGTGGCTTAGCCATCGCCAGACGCATCTCAGA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS GCA 72 bp GCACAAGCACCTCCTCCAAGGATCCATAGAGCTGGTTaGACTCAGAGCAGACATAGCGGTGCTCAATGTACA +
Preference number: 6 (lower is better)
Translates to: AQAPPPRIHRAG*TQSRHSGAQCT
Trigger: TGTACATTGAGCACCGCTATGTCTGCTCTGAGTGCAACCAGCTCTATGGATCCTTGGAGGAGGTGCTTGTGC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS CCA 72 bp TTCTTCTTGAACATCTTGCCACAAATGCTGCACTTATaGCGCCGCTCTAGCCGGTGCACAAAACGCTGGTGC +
Preference number: 6 (lower is better)
Translates to: FFLNILPQMLHL*RRSSRCTKRWC
Trigger: GCACCAGCGTTTTGTGCACCGGCTAGAGCGGCGCCATAAGTGCAGCATTTGTGGCAAGATGTTCAAGAAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2
CDS TCA 72 bp GTGTACGCAGATGGTTCCGCACATGAGACTTCTTCTTaGACATCTTGCCACAAATGCTGCACTTATGGCGCC +
Preference number: 6 (lower is better)
Translates to: VYADGSAHETSS*TSCHKCCTYGA
Trigger: GGCGCCATAAGTGCAGCATTTGTGGCAAGATGTTCAAGAAGAAGTCTCATGTGCGGAACCATCTGCGTACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053410.11
ENSMUST00000179556.2