Pregenerated sensors for ZFP57 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036036Ensembl transcript IDs: ENSMUST00000069250.14, ENSMUST00000089968.13, ENSMUST00000172527.8, ENSMUST00000172540.2, ENSMUST00000172580.8, ENSMUST00000173588.8, ENSMUST00000174524.8, ENSMUST00000174672.2
Found 37 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GTCGAGGCTCCGCTGTTCCGTGCCTTAGCCCTGGCCACTGGTCCCTaGATCACTTTCACATACTTGAGGGCGGGCGCTTGGGATCTAGGT | + |
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Preference number: 5 (lower is better) Translates to: VEAPLFRALALATGP*ITFTYLRAGAWDLG Trigger: ACCTAGATCCCAAGCGCCCGCCCTCAAGTATGTGAAAGTGATCCAGGGACCAGTGGCCAGGGCTAAGGCACGGAACAGCGGAGCCTCGAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000069250.14 ENSMUST00000089968.13 ENSMUST00000174524.8 ENSMUST00000174672.2 |
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| CDS CCA 90 bp | ATTCAGGGTCGAGGCTCCGCTGTTCCGTGCCTTAGCCCTGGCCACTaGTCCCTGGATCACTTTCACATACTTGAGGGCGGGCGCTTGGGA | + |
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Preference number: 5 (lower is better) Translates to: IQGRGSAVPCLSPGH*SLDHFHILEGGRLG Trigger: TCCCAAGCGCCCGCCCTCAAGTATGTGAAAGTGATCCAGGGACCAGTGGCCAGGGCTAAGGCACGGAACAGCGGAGCCTCGACCCTGAAT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000069250.14 ENSMUST00000089968.13 ENSMUST00000174524.8 ENSMUST00000174672.2 |
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| CDS CCA 90 bp | CAGCCTCTGGTTGCTAGCCTGGTTGCCAGCCTGGTTGCTAGCTGCTaGCTTGTTTTGGTGTACCTTCAGGTGACGGTTGACCTCAGACTG | + |
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Preference number: 5 (lower is better) Translates to: QPLVASLVASLVASC*LVLVYLQVTVDLRL Trigger: CAGTCTGAGGTCAACCGTCACCTGAAGGTACACCAAAACAAGCCAGCAGCTAGCAACCAGGCTGGCAACCAGGCTAGCAACCAGAGGCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000069250.14 ENSMUST00000089968.13 ENSMUST00000174524.8 ENSMUST00000174672.2 |
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| CDS GCA 90 bp | CTTCAGCCTCTGGTTGCTAGCCTGGTTGCCAGCCTGGTTGCTAGCTaGTGGCTTGTTTTGGTGTACCTTCAGGTGACGGTTGACCTCAGA | + |
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Preference number: 5 (lower is better) Translates to: LQPLVASLVASLVAS*WLVLVYLQVTVDLR Trigger: TCTGAGGTCAACCGTCACCTGAAGGTACACCAAAACAAGCCAGCAGCTAGCAACCAGGCTGGCAACCAGGCTAGCAACCAGAGGCTGAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000069250.14 ENSMUST00000089968.13 ENSMUST00000174524.8 ENSMUST00000174672.2 |
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| CDS GCA 90 bp | CTGAGCCTTGTAGCCCTTGCCTTTGCGGCTTTGTGGATTTGTGACTaGCAGCCTCCGGGACCTCACAGGAAACTGGTGATTAAAGAGGAA | + |
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Preference number: 5 (lower is better) Translates to: LSLVALAFAALWICD*QPPGPHRKLVIKEE Trigger: TTCCTCTTTAATCACCAGTTTCCTGTGAGGTCCCGGAGGCTGGCAGTCACAAATCCACAAAGCCGCAAAGGCAAGGGCTACAAGGCTCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000069250.14 ENSMUST00000089968.13 ENSMUST00000172540.2 ENSMUST00000172580.8 ENSMUST00000173588.8 ENSMUST00000174524.8 ENSMUST00000174672.2 |
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| CDS GCA 90 bp | AATAGAGTTGGATCTGACATTCAGGGTCGAGGCTCCGCTGTTCCGTaGCTTAGCCCTGGCCACTGGTCCCTGGATCACTTTCACATACTT | + |
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Preference number: 5 (lower is better) Translates to: NRVGSDIQGRGSAVP*LSPGHWSLDHFHIL Trigger: AAGTATGTGAAAGTGATCCAGGGACCAGTGGCCAGGGCTAAGGCACGGAACAGCGGAGCCTCGACCCTGAATGTCAGATCCAACTCTATT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000069250.14 ENSMUST00000089968.13 ENSMUST00000174524.8 ENSMUST00000174672.2 |
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| CDS GCA 90 bp | CCACCCTACCTTTCCCAGACAGGCCTTCTGTTTCAGGATTCTCAGTaGAGGCACGTTTCCGTCTTCTCCTCCTGGATTCCATCCTCTTTC | + |
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Preference number: 5 (lower is better) Translates to: PPYLSQTGLLFQDSQ*RHVSVFSSWIPSSF Trigger: GAAAGAGGATGGAATCCAGGAGGAGAAGACGGAAACGTGCCTGCACTGAGAATCCTGAAACAGAAGGCCTGTCTGGGAAAGGTAGGGTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000069250.14 ENSMUST00000089968.13 ENSMUST00000174524.8 ENSMUST00000174672.2 |
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| CDS TCA 90 bp | TTGGATGAGTGGGCCGACTCTTTGCAGCAGAAGTGCTGGTTGGGTTaGCGTCTGAAGTGGATCTTGAGGTGGGTTAAGAGACAGGTTCTC | + |
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Preference number: 5 (lower is better) Translates to: LDEWADSLQQKCWLG*RLKWILRWVKRQVL Trigger: GAGAACCTGTCTCTTAACCCACCTCAAGATCCACTTCAGACGTCAACCCAACCAGCACTTCTGCTGCAAAGAGTCGGCCCACTCATCCAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000069250.14 ENSMUST00000089968.13 ENSMUST00000174524.8 ENSMUST00000174672.2 |
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| CDS TCA 90 bp | ACAGACGGGGCAAGTGTAGATCTTTTGCATTCTGAGTGTGTTGGATaGGTGGGCCGACTCTTTGCAGCAGAAGTGCTGGTTGGGTTGACG | + |
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Preference number: 5 (lower is better) Translates to: TDGASVDLLHSECVG*VGRLFAAEVLVGLT Trigger: CGTCAACCCAACCAGCACTTCTGCTGCAAAGAGTCGGCCCACTCATCCAACACACTCAGAATGCAAAAGATCTACACTTGCCCCGTCTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000069250.14 ENSMUST00000089968.13 ENSMUST00000174524.8 ENSMUST00000174672.2 |
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| CDS CCA 90 bp | GCCGAGCAAATGACCCAGGATTTCCCAGCATTTACTGAATCTGATTaGTCTTTGGCAGCACAAGTGATCCAGCAGGCTCTCCTTTCCCCT | + |
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Preference number: 5 (lower is better) Translates to: AEQMTQDFPAFTESD*SLAAQVIQQALLSP Trigger: AGGGGAAAGGAGAGCCTGCTGGATCACTTGTGCTGCCAAAGACCAATCAGATTCAGTAAATGCTGGGAAATCCTGGGTCATTTGCTCGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000069250.14 ENSMUST00000089968.13 ENSMUST00000174524.8 ENSMUST00000174672.2 |
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| CDS GCA 90 bp | CTGTGTAGAAGTAAGATATTCCCATTCTTCCTGGGTGAAAGACACTaGCACGTCCTCATAACTGACTGGTGTCCTGGATGGCTGGGAAGA | + |
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Preference number: 5 (lower is better) Translates to: LCRSKIFPFFLGERH*HVLITDWCPGWLGR Trigger: TCTTCCCAGCCATCCAGGACACCAGTCAGTTATGAGGACGTGGCAGTGTCTTTCACCCAGGAAGAATGGGAATATCTTACTTCTACACAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000069250.14 ENSMUST00000172527.8 ENSMUST00000174524.8 ENSMUST00000174672.2 |
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| CDS GCA 90 bp | CTGTGTAGAAGTAAGATATTCCCATTCTTCCTGGGTGAAAGACACTaGCACGTCCTCATAACTGACTGGTGTCCTGGATGGCTGTTTCCT | + |
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Preference number: 5 (lower is better) Translates to: LCRSKIFPFFLGERH*HVLITDWCPGWLFP Trigger: AGGAAACAGCCATCCAGGACACCAGTCAGTTATGAGGACGTGGCAGTGTCTTTCACCCAGGAAGAATGGGAATATCTTACTTCTACACAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000089968.13 ENSMUST00000172540.2 ENSMUST00000172580.8 |
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| CDS CCA 72 bp | CCGCTGTTCCGTGCCTTAGCCCTGGCCACTGGTCCCTaGATCACTTTCACATACTTGAGGGCGGGCGCTTGG | + |
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Preference number: 6 (lower is better) Translates to: PLFRALALATGP*ITFTYLRAGAW Trigger: CCAAGCGCCCGCCCTCAAGTATGTGAAAGTGATCCAGGGACCAGTGGCCAGGGCTAAGGCACGGAACAGCGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000069250.14 ENSMUST00000089968.13 ENSMUST00000174524.8 ENSMUST00000174672.2 |
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| CDS CCA 72 bp | CGAGGCTCCGCTGTTCCGTGCCTTAGCCCTGGCCACTaGTCCCTGGATCACTTTCACATACTTGAGGGCGGG | + |
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Preference number: 6 (lower is better) Translates to: RGSAVPCLSPGH*SLDHFHILEGG Trigger: CCCGCCCTCAAGTATGTGAAAGTGATCCAGGGACCAGTGGCCAGGGCTAAGGCACGGAACAGCGGAGCCTCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000069250.14 ENSMUST00000089968.13 ENSMUST00000174524.8 ENSMUST00000174672.2 |
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| CDS GCA 72 bp | GGATCTGACATTCAGGGTCGAGGCTCCGCTGTTCCGTaGCTTAGCCCTGGCCACTGGTCCCTGGATCACTTT | + |
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Preference number: 6 (lower is better) Translates to: GSDIQGRGSAVP*LSPGHWSLDHF Trigger: AAAGTGATCCAGGGACCAGTGGCCAGGGCTAAGGCACGGAACAGCGGAGCCTCGACCCTGAATGTCAGATCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000069250.14 ENSMUST00000089968.13 ENSMUST00000174524.8 ENSMUST00000174672.2 |
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| CDS CAA 90 bp | CGTGCCTTAGCCCTGGCCACTGGTCCCTGGATCACTTTCACATACTaGAGGGCGGGCGCTTGGGATCTAGGTGTTGTAGGTGGAACCCTA | + |
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Preference number: 6 (lower is better) Translates to: RALALATGPWITFTY*RAGAWDLGVVGGTL Trigger: TAGGGTTCCACCTACAACACCTAGATCCCAAGCGCCCGCCCTCAAGTATGTGAAAGTGATCCAGGGACCAGTGGCCAGGGCTAAGGCACG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000069250.14 ENSMUST00000089968.13 ENSMUST00000174524.8 ENSMUST00000174672.2 |
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| CDS CCA 72 bp | CCGAATCTTCTTCTGTCACAGGACTCTCAGGGCTGGTaGCACCCTCCATTTCCCACGGAGCCACCCTACCTT | + |
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Preference number: 6 (lower is better) Translates to: PNLLLSQDSQGW*HPPFPTEPPYL Trigger: AAGGTAGGGTGGCTCCGTGGGAAATGGAGGGTGCCACCAGCCCTGAGAGTCCTGTGACAGAAGAAGATTCGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000069250.14 ENSMUST00000089968.13 ENSMUST00000174524.8 ENSMUST00000174672.2 |
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| CDS CCA 72 bp | AGTCCGAATCTTCTTCTGTCACAGGACTCTCAGGGCTaGTGGCACCCTCCATTTCCCACGGAGCCACCCTAC | + |
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Preference number: 6 (lower is better) Translates to: SPNLLLSQDSQG*WHPPFPTEPPY Trigger: GTAGGGTGGCTCCGTGGGAAATGGAGGGTGCCACCAGCCCTGAGAGTCCTGTGACAGAAGAAGATTCGGACT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000069250.14 ENSMUST00000089968.13 ENSMUST00000174524.8 ENSMUST00000174672.2 |
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| CDS CAA 72 bp | GCCCTGGCCACTGGTCCCTGGATCACTTTCACATACTaGAGGGCGGGCGCTTGGGATCTAGGTGTTGTAGGT | + |
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Preference number: 6 (lower is better) Translates to: ALATGPWITFTY*RAGAWDLGVVG Trigger: ACCTACAACACCTAGATCCCAAGCGCCCGCCCTCAAGTATGTGAAAGTGATCCAGGGACCAGTGGCCAGGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000069250.14 ENSMUST00000089968.13 ENSMUST00000174524.8 ENSMUST00000174672.2 |
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| CDS GCA 72 bp | GTAGCCCTTGCCTTTGCGGCTTTGTGGATTTGTGACTaGCAGCCTCCGGGACCTCACAGGAAACTGGTGATT | + |
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Preference number: 6 (lower is better) Translates to: VALAFAALWICD*QPPGPHRKLVI Trigger: AATCACCAGTTTCCTGTGAGGTCCCGGAGGCTGGCAGTCACAAATCCACAAAGCCGCAAAGGCAAGGGCTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000069250.14 ENSMUST00000089968.13 ENSMUST00000172540.2 ENSMUST00000172580.8 ENSMUST00000173588.8 ENSMUST00000174524.8 ENSMUST00000174672.2 |
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| CDS CCA 72 bp | CTAGGTGTTGTAGGTGGAACCCTACTCTTCAGCCTCTaGTTGCTAGCCTGGTTGCCAGCCTGGTTGCTAGCT | + |
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Preference number: 6 (lower is better) Translates to: LGVVGGTLLFSL*LLAWLPAWLLA Trigger: AGCTAGCAACCAGGCTGGCAACCAGGCTAGCAACCAGAGGCTGAAGAGTAGGGTTCCACCTACAACACCTAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000069250.14 ENSMUST00000089968.13 ENSMUST00000174524.8 ENSMUST00000174672.2 |
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| CDS CAA 72 bp | TTCAGCCTCTGGTTGCTAGCCTGGTTGCCAGCCTGGTaGCTAGCTGCTGGCTTGTTTTGGTGTACCTTCAGG | + |
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Preference number: 6 (lower is better) Translates to: FSLWLLAWLPAW*LAAGLFWCTFR Trigger: CCTGAAGGTACACCAAAACAAGCCAGCAGCTAGCAACCAGGCTGGCAACCAGGCTAGCAACCAGAGGCTGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000069250.14 ENSMUST00000089968.13 ENSMUST00000174524.8 ENSMUST00000174672.2 |
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| CDS CAA 90 bp | TGGGATCTAGGTGTTGTAGGTGGAACCCTACTCTTCAGCCTCTGGTaGCTAGCCTGGTTGCCAGCCTGGTTGCTAGCTGCTGGCTTGTTT | + |
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Preference number: 6 (lower is better) Translates to: WDLGVVGGTLLFSLW*LAWLPAWLLAAGLF Trigger: AAACAAGCCAGCAGCTAGCAACCAGGCTGGCAACCAGGCTAGCAACCAGAGGCTGAAGAGTAGGGTTCCACCTACAACACCTAGATCCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000069250.14 ENSMUST00000089968.13 ENSMUST00000174524.8 ENSMUST00000174672.2 |
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| CDS TCA 72 bp | TGGGCCGACTCTTTGCAGCAGAAGTGCTGGTTGGGTTaGCGTCTGAAGTGGATCTTGAGGTGGGTTAAGAGA | + |
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Preference number: 6 (lower is better) Translates to: WADSLQQKCWLG*RLKWILRWVKR Trigger: TCTCTTAACCCACCTCAAGATCCACTTCAGACGTCAACCCAACCAGCACTTCTGCTGCAAAGAGTCGGCCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000069250.14 ENSMUST00000089968.13 ENSMUST00000174524.8 ENSMUST00000174672.2 |
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| CDS GCA 72 bp | CTTTCCCAGACAGGCCTTCTGTTTCAGGATTCTCAGTaGAGGCACGTTTCCGTCTTCTCCTCCTGGATTCCA | + |
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Preference number: 6 (lower is better) Translates to: LSQTGLLFQDSQ*RHVSVFSSWIP Trigger: TGGAATCCAGGAGGAGAAGACGGAAACGTGCCTGCACTGAGAATCCTGAAACAGAAGGCCTGTCTGGGAAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000069250.14 ENSMUST00000089968.13 ENSMUST00000174524.8 ENSMUST00000174672.2 |
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| CDS CCA 72 bp | GATTCTCAGTGCAGGCACGTTTCCGTCTTCTCCTCCTaGATTCCATCCTCTTTCCCGAGGAGTCCCTTACTT | + |
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Preference number: 6 (lower is better) Translates to: DSQCRHVSVFSS*IPSSFPRSPLL Trigger: AAGTAAGGGACTCCTCGGGAAAGAGGATGGAATCCAGGAGGAGAAGACGGAAACGTGCCTGCACTGAGAATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000069250.14 ENSMUST00000089968.13 ENSMUST00000174524.8 ENSMUST00000174672.2 |
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| CDS TCA 72 bp | CTGCTGGCTTGTTTTGGTGTACCTTCAGGTGACGGTTaGCCTCAGACTGATCCCGGAAACACTTTCCACACT | + |
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Preference number: 6 (lower is better) Translates to: LLACFGVPSGDG*PQTDPGNTFHT Trigger: AGTGTGGAAAGTGTTTCCGGGATCAGTCTGAGGTCAACCGTCACCTGAAGGTACACCAAAACAAGCCAGCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000069250.14 ENSMUST00000089968.13 ENSMUST00000174524.8 ENSMUST00000174672.2 |
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| CDS TCA 72 bp | TGTCACAGACGGGGCAAGTGTAGATCTTTTGCATTCTaGGTGTGTTGGATGAGTGGGCCGACTCTTTGCAGC | + |
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Preference number: 6 (lower is better) Translates to: CHRRGKCRSFAF*VCWMSGPTLCS Trigger: GCTGCAAAGAGTCGGCCCACTCATCCAACACACTCAGAATGCAAAAGATCTACACTTGCCCCGTCTGTGACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000069250.14 ENSMUST00000089968.13 ENSMUST00000174524.8 ENSMUST00000174672.2 |
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| CDS TCA 72 bp | TGCCACAGGTCAGACAGAAAAAGAATGGTCCACCTTTaGATACCCCTGTGCAACTGGAGGACTTCTCCTGCT | + |
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Preference number: 6 (lower is better) Translates to: CHRSDRKRMVHL*IPLCNWRTSPA Trigger: AGCAGGAGAAGTCCTCCAGTTGCACAGGGGTATTCAAAGGTGGACCATTCTTTTTCTGTCTGACCTGTGGCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 7 transcripts: ENSMUST00000069250.14 ENSMUST00000089968.13 ENSMUST00000172540.2 ENSMUST00000172580.8 ENSMUST00000173588.8 ENSMUST00000174524.8 ENSMUST00000174672.2 |
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| CDS GCA 72 bp | CCTTTGAATACCCCTGTGCAACTGGAGGACTTCTCCTaGTCCTCGTTCTTATCTTGCAGATCTGAGCTAGGT | + |
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Preference number: 6 (lower is better) Translates to: PLNTPVQLEDFS*SSFLSCRSELG Trigger: ACCTAGCTCAGATCTGCAAGATAAGAACGAGGAGCAGGAGAAGTCCTCCAGTTGCACAGGGGTATTCAAAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENSMUST00000069250.14 ENSMUST00000089968.13 ENSMUST00000172540.2 ENSMUST00000172580.8 ENSMUST00000173588.8 ENSMUST00000174524.8 ENSMUST00000174672.2 |
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| CDS GCA 72 bp | GGTGACGGCTCAGTCCAGAAGCATCACGGTAAGTCTTaGCACAGAAATTACAAAAGAAAGGCCTCTCTCCAC | + |
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Preference number: 6 (lower is better) Translates to: GDGSVQKHHGKS*HRNYKRKASLH Trigger: GTGGAGAGAGGCCTTTCTTTTGTAATTTCTGTGGCAAGACTTACCGTGATGCTTCTGGACTGAGCCGTCACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000069250.14 ENSMUST00000089968.13 ENSMUST00000172580.8 ENSMUST00000173588.8 ENSMUST00000174524.8 ENSMUST00000174672.2 |
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| CDS CAA 72 bp | TTGCCACAGGTCAGACAGAAAAAGAATGGTCCACCTTaGAATACCCCTGTGCAACTGGAGGACTTCTCCTGC | + |
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Preference number: 6 (lower is better) Translates to: LPQVRQKKNGPP*NTPVQLEDFSC Trigger: GCAGGAGAAGTCCTCCAGTTGCACAGGGGTATTCAAAGGTGGACCATTCTTTTTCTGTCTGACCTGTGGCAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 7 transcripts: ENSMUST00000069250.14 ENSMUST00000089968.13 ENSMUST00000172540.2 ENSMUST00000172580.8 ENSMUST00000173588.8 ENSMUST00000174524.8 ENSMUST00000174672.2 |
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| CDS TCA 72 bp | GCAAGTGTAGATCTTTTGCATTCTGAGTGTGTTGGATaGGTGGGCCGACTCTTTGCAGCAGAAGTGCTGGTT | + |
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Preference number: 6 (lower is better) Translates to: ASVDLLHSECVG*VGRLFAAEVLV Trigger: AACCAGCACTTCTGCTGCAAAGAGTCGGCCCACTCATCCAACACACTCAGAATGCAAAAGATCTACACTTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000069250.14 ENSMUST00000089968.13 ENSMUST00000174524.8 ENSMUST00000174672.2 |
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| CDS CCA 72 bp | ATGACCCAGGATTTCCCAGCATTTACTGAATCTGATTaGTCTTTGGCAGCACAAGTGATCCAGCAGGCTCTC | + |
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Preference number: 6 (lower is better) Translates to: MTQDFPAFTESD*SLAAQVIQQAL Trigger: GAGAGCCTGCTGGATCACTTGTGCTGCCAAAGACCAATCAGATTCAGTAAATGCTGGGAAATCCTGGGTCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000069250.14 ENSMUST00000089968.13 ENSMUST00000174524.8 ENSMUST00000174672.2 |
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| CDS CAA 72 bp | CAGGATTTCCCAGCATTTACTGAATCTGATTGGTCTTaGGCAGCACAAGTGATCCAGCAGGCTCTCCTTTCC | + |
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Preference number: 6 (lower is better) Translates to: QDFPAFTESDWS*AAQVIQQALLS Trigger: GGAAAGGAGAGCCTGCTGGATCACTTGTGCTGCCAAAGACCAATCAGATTCAGTAAATGCTGGGAAATCCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000069250.14 ENSMUST00000089968.13 ENSMUST00000174524.8 ENSMUST00000174672.2 |
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| CDS CAA 90 bp | CAAATGACCCAGGATTTCCCAGCATTTACTGAATCTGATTGGTCTTaGGCAGCACAAGTGATCCAGCAGGCTCTCCTTTCCCCTAAAGGA | + |
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Preference number: 6 (lower is better) Translates to: QMTQDFPAFTESDWS*AAQVIQQALLSPKG Trigger: TCCTTTAGGGGAAAGGAGAGCCTGCTGGATCACTTGTGCTGCCAAAGACCAATCAGATTCAGTAAATGCTGGGAAATCCTGGGTCATTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000069250.14 ENSMUST00000089968.13 ENSMUST00000174524.8 ENSMUST00000174672.2 |
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| CDS TCA 72 bp | GTGACTGCCAGCCTCCGGGACCTCACAGGAAACTGGTaGTTAAAGAGGAAGGTGTTCTTTTTGAAACATTTG | + |
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Preference number: 6 (lower is better) Translates to: VTASLRDLTGNW*LKRKVFFLKHL Trigger: CAAATGTTTCAAAAAGAACACCTTCCTCTTTAATCACCAGTTTCCTGTGAGGTCCCGGAGGCTGGCAGTCAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 7 transcripts: ENSMUST00000069250.14 ENSMUST00000089968.13 ENSMUST00000172540.2 ENSMUST00000172580.8 ENSMUST00000173588.8 ENSMUST00000174524.8 ENSMUST00000174672.2 |
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