Pregenerated sensors for ZFP566 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000078768Ensembl transcript IDs: ENSMUST00000088785.6
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | GCCAGACTGAATAATCTGAGTCAAAAGAAATACAAGCTGTTACTAGACAGCTTCTTCTCTGGTGTCTGGTaGGGTCAGAACCCGACCGGA | + |
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Preference number: 4 (lower is better) Translates to: ARLNNLSQKKYKLLLDSFFSGVW*GQNPTG Trigger: TCCGGTCGGGTTCTGACCTCACCAGACACCAGAGAA...GAAGCTGTCTAGTAACAGCTTGTATTTCTTTTGACTCAGATTATTCAGTCTGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088785.6 |
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| CDS-3UTR GCA 90 bp | CTGAATAATCTGAGTCAAAAGAAATACAAGCTGTTACTAGACAGCTTCCAGAATCTCTCACGGTGGCCATaGCATTCCCGGGCACTGCTG | + |
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Preference number: 4 (lower is better) Translates to: LNNLSQKKYKLLLDSFQNLSRWP*HSRALL Trigger: CAGCAGTGCCCGGGAATGGCATGGCCACCGTGAGAG...ATTCTGGAAGCTGTCTAGTAACAGCTTGTATTTCTTTTGACTCAGATTATTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088785.6 |
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| CDS-3UTR CCA 90 bp | GCCAGACTGAATAATCTGAGTCAAAAGAAATACAAGCTGTTACTAGACAGCTTCCTGCAGCCTGAAGGATaGGCACTGACTGAGAGTGGG | + |
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Preference number: 4 (lower is better) Translates to: ARLNNLSQKKYKLLLDSFLQPEG*ALTESG Trigger: CCCACTCTCAGTCAGTGCCCATCCTTCAGGCTGCAG...GAAGCTGTCTAGTAACAGCTTGTATTTCTTTTGACTCAGATTATTCAGTCTGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088785.6 |
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| CDS-3UTR TCA 90 bp | CTGAATAATCTGAGTCAAAAGAAATACAAGCTGTTACTAGACAGCTTCCAGAATATTCCCGGGCACTGCTaGGACTGGAGCACTGAAGGT | + |
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Preference number: 4 (lower is better) Translates to: LNNLSQKKYKLLLDSFQNIPGHC*DWSTEG Trigger: ACCTTCAGTGCTCCAGTCTCAGCAGTGCCCGGGAAT...ATTCTGGAAGCTGTCTAGTAACAGCTTGTATTTCTTTTGACTCAGATTATTCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088785.6 |
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| CDS-3UTR TCA 90 bp | CAAGCTGTTACTAGACAGCTTCCAGAATATACTGCATTCATAGGGTGCTTCTCCATAAGTTGGGAACTCTaGCTAAAGGCATTGCCGCAT | + |
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Preference number: 4 (lower is better) Translates to: QAVTRQLPEYTAFIGCFSISWEL*LKALPH Trigger: ATGCGGCAATGCCTTTAGTCAGAGTTCCCAACTTAT...GGAGAAGCACCCTATGAATGCAGTATATTCTGGAAGCTGTCTAGTAACAGCTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088785.6 |
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| CDS-3UTR TCA 90 bp | CAAGCTGTTACTAGACAGCTTCCAGAATATACTGCATTCATAGGGTGCTTCTCCATGGCGAGTAAAATTTaGGCCACTACTGAAGGCTTT | + |
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Preference number: 4 (lower is better) Translates to: QAVTRQLPEYTAFIGCFSMASKI*ATTEGF Trigger: AAAGCCTTCAGTAGTGGCTCAAATTTTACTCGCCAT...GGAGAAGCACCCTATGAATGCAGTATATTCTGGAAGCTGTCTAGTAACAGCTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088785.6 |
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| CDS-3UTR GCA 90 bp | CTGAATAATCTGAGTCAAAAGAAATACAAGCTGTTACTAGACAGCTTCCAGAATCTGTACAGATCTCTCTaGTCCTCAGTCAGGCACTCC | + |
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Preference number: 4 (lower is better) Translates to: LNNLSQKKYKLLLDSFQNLYRSL*SSVRHS Trigger: GGAGTGCCTGACTGAGGAGCAGAGAGATCTGTACAG...ATTCTGGAAGCTGTCTAGTAACAGCTTGTATTTCTTTTGACTCAGATTATTCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088785.6 |
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| CDS-3UTR CCA 90 bp | GCCAGACTGAATAATCTGAGTCAAAAGAAATACAAGCTGTTACTAGACAGCTTCTTCAGGAATAACTTCTaGGCCTCACATCTTGACTCC | + |
|
Preference number: 4 (lower is better) Translates to: ARLNNLSQKKYKLLLDSFFRNNF*ASHLDS Trigger: GGAGTCAAGATGTGAGGCCCAGAAGTTATTCCTGAA...GAAGCTGTCTAGTAACAGCTTGTATTTCTTTTGACTCAGATTATTCAGTCTGGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088785.6 |
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| CDS-3UTR TCA 90 bp | CTGAATAATCTGAGTCAAAAGAAATACAAGCTGTTACTAGACAGCTTCCAGAATATGCCGTGTCAGGTCTaGGCCACAAATGAATGTTTT | + |
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Preference number: 4 (lower is better) Translates to: LNNLSQKKYKLLLDSFQNMPCQV*ATNECF Trigger: AAAACATTCATTTGTGGCTCAGACCTGACACGGCAT...ATTCTGGAAGCTGTCTAGTAACAGCTTGTATTTCTTTTGACTCAGATTATTCAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088785.6 |
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| CDS-3UTR GCA 90 bp | CTGAATAATCTGAGTCAAAAGAAATACAAGCTGTTACTAGACAGCTTCCAGAATCTCATTATCTCCCACTaGGCTGTCTCTATCTCATAC | + |
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Preference number: 4 (lower is better) Translates to: LNNLSQKKYKLLLDSFQNLIISH*AVSISY Trigger: GTATGAGATAGAGACAGCGCAGTGGGAGATAATGAG...ATTCTGGAAGCTGTCTAGTAACAGCTTGTATTTCTTTTGACTCAGATTATTCAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088785.6 |
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| CDS-3UTR TCA 90 bp | CTGAATAATCTGAGTCAAAAGAAATACAAGCTGTTACTAGACAGCTTCCAGAATATGACTGATGAGTTGTaGACTCTGAGAATAGGCTTT | + |
|
Preference number: 4 (lower is better) Translates to: LNNLSQKKYKLLLDSFQNMTDEL*TLRIGF Trigger: AAAGCCTATTCTCAGAGTTCACAACTCATCAGTCAT...ATTCTGGAAGCTGTCTAGTAACAGCTTGTATTTCTTTTGACTCAGATTATTCAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088785.6 |
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| CDS TCA 90 bp | TCACGGTGGCCATGCCATTCCCGGGCACTGCTGAGACTGGAGCACTaGAGGTCCTGTCTCGTGAGCTTCCTCATTATCTCCCACTGCGCT | + |
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Preference number: 5 (lower is better) Translates to: SRWPCHSRALLRLEH*RSCLVSFLIISHCA Trigger: AGCGCAGTGGGAGATAATGAGGAAGCTCACGAGACAGGACCTTCAGTGCTCCAGTCTCAGCAGTGCCCGGGAATGGCATGGCCACCGTGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088785.6 |
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| CDS TCA 90 bp | TTCTCTTTATTCTTGATAATCTGCTGCAGCCTGAAGGATGGGCACTaGCTGAGAGTGGGCACGTCGTCACGGTTGATGATCAGTTCGCTG | + |
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Preference number: 5 (lower is better) Translates to: FSLFLIICCSLKDGH*LRVGTSSRLMISSL Trigger: CAGCGAACTGATCATCAACCGTGACGACGTGCCCACTCTCAGTCAGTGCCCATCCTTCAGGCTGCAGCAGATTATCAAGAATAAAGAGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088785.6 |
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| CDS CCA 90 bp | TGCGCTGTCTCTATCTCATACAGCTCCTTCTTCAGGAATAACTTCTaGGCCTCACATCTTGACTCCAGGACCATTGAGAGCAGGTTGCTG | + |
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Preference number: 5 (lower is better) Translates to: CAVSISYSSFFRNNF*ASHLDSRTIESRLL Trigger: CAGCAACCTGCTCTCAATGGTCCTGGAGTCAAGATGTGAGGCCCAGAAGTTATTCCTGAAGAAGGAGCTGTATGAGATAGAGACAGCGCA 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088785.6 |
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| CDS CCA 90 bp | ACAATATTTCTCTTTATTCTTGATAATCTGCTGCAGCCTGAAGGATaGGCACTGACTGAGAGTGGGCACGTCGTCACGGTTGATGATCAG | + |
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Preference number: 5 (lower is better) Translates to: TIFLFILDNLLQPEG*ALTESGHVVTVDDQ Trigger: CTGATCATCAACCGTGACGACGTGCCCACTCTCAGTCAGTGCCCATCCTTCAGGCTGCAGCAGATTATCAAGAATAAAGAGAAATATTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088785.6 |
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| CDS-3UTR CAA 90 bp | CTCCAATATGAGTTTCTCTTAGATGAACAAGTTTGTCAACAAGTCAACTGTTTCTATTTCTCTTTATTCTaGATAATCTGCTGCAGCCTG | + |
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Preference number: 5 (lower is better) Translates to: LQYEFLLDEQVCQQVNCFYFSLF*IICCSL Trigger: CAGGCTGCAGCAGATTATCAAGAATAAAGAGAAATA...GAAACAGTTGACTTGTTGACAAACTTGTTCATCTAAGAGAAACTCATATTGGAG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088785.6 |
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| CDS TCA 72 bp | TTCTTGATAATCTGCTGCAGCCTGAAGGATGGGCACTaGCTGAGAGTGGGCACGTCGTCACGGTTGATGATC | + |
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Preference number: 6 (lower is better) Translates to: FLIICCSLKDGH*LRVGTSSRLMI Trigger: GATCATCAACCGTGACGACGTGCCCACTCTCAGTCAGTGCCCATCCTTCAGGCTGCAGCAGATTATCAAGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088785.6 |
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| CDS GCA 72 bp | AGGTCCTGTCTCGTGAGCTTCCTCATTATCTCCCACTaGGCTGTCTCTATCTCATACAGCTCCTTCTTCAGG | + |
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Preference number: 6 (lower is better) Translates to: RSCLVSFLIISH*AVSISYSSFFR Trigger: CCTGAAGAAGGAGCTGTATGAGATAGAGACAGCGCAGTGGGAGATAATGAGGAAGCTCACGAGACAGGACCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088785.6 |
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| CDS CCA 72 bp | CTCTTTATTCTTGATAATCTGCTGCAGCCTGAAGGATaGGCACTGACTGAGAGTGGGCACGTCGTCACGGTT | + |
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Preference number: 6 (lower is better) Translates to: LFILDNLLQPEG*ALTESGHVVTV Trigger: AACCGTGACGACGTGCCCACTCTCAGTCAGTGCCCATCCTTCAGGCTGCAGCAGATTATCAAGAATAAAGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088785.6 |
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| CDS CAA 72 bp | GCTCCTTCTTCAGGAATAACTTCTGGGCCTCACATCTaGACTCCAGGACCATTGAGAGCAGGTTGCTGTAAT | + |
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Preference number: 6 (lower is better) Translates to: APSSGITSGPHI*TPGPLRAGCCN Trigger: ATTACAGCAACCTGCTCTCAATGGTCCTGGAGTCAAGATGTGAGGCCCAGAAGTTATTCCTGAAGAAGGAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088785.6 |
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| CDS CCA 72 bp | TCTATCTCATACAGCTCCTTCTTCAGGAATAACTTCTaGGCCTCACATCTTGACTCCAGGACCATTGAGAGC | + |
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Preference number: 6 (lower is better) Translates to: SISYSSFFRNNF*ASHLDSRTIES Trigger: GCTCTCAATGGTCCTGGAGTCAAGATGTGAGGCCCAGAAGTTATTCCTGAAGAAGGAGCTGTATGAGATAGA 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088785.6 |
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