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Pregenerated sensors for ZFP558 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000074500

Ensembl transcript IDs: ENSMUST00000034647.11, ENSMUST00000159596.8

Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ACTGAATGGCATTTCATACTTATCAAAAGAATGACGATCTATTGCTaGTTTCTCTTCACTAATTTCATGGCAAGTTTCTCAAACGCGTCT +
Preference number: 1 (lower is better)
Translates to: TEWHFILIKRMTIYC*FLFTNFMASFSNAS
Trigger: AGACGCGTTTGAGAAACTTGCCATGAAATTAGTGAAGAGAAATCAGCAATAGATCGTCATTCTTTTGATAAGTATGAAATGCCATTCAGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159596.8
3UTR-3UTR TCA 90 bp TCACTAATTTCATGGCAAGTTTCTCAAACGCGTCTCAGAAAGCTACCTCCTGGCATGAAGTCTGAGGGATaGGGGATCGCTAAATGCTTT +
Preference number: 2 (lower is better)
Translates to: SLISWQVSQTRLRKLPPGMKSEG*GIAKCF
Trigger: AAAGCATTTAGCGATCCCTCATCCCTCAGACTTCAT...GCCAGGAGGTAGCTTTCTGAGACGCGTTTGAGAAACTTGCCATGAAATTAGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159596.8
3UTR-3UTR CCA 90 bp AGCTACCTCCTGGCCCTCAGGTATTCTGTAGTTTTCTCTCACACAGTATCAAGGTTCTCCAAATCTGGATaGATGCCTGGAATAATTCCT +
Preference number: 2 (lower is better)
Translates to: SYLLALRYSVVFSHTVSRFSKSG*MPGIIP
Trigger: AGGAATTATTCCAGGCATCCATCCAGATTTGGAGAA...CCTTGATACTGTGTGAGAGAAAACTACAGAATACCTGAGGGCCAGGAGGTAGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159596.8
3UTR-3UTR TCA 90 bp TCTCAAACGCGTCTCAGAAAGCTACCTCCTGGCCCTCAGGTATTCTGTAGTTTTATTGATTGCACTCATTaGCTTTCATTCCATGATGAC +
Preference number: 2 (lower is better)
Translates to: SQTRLRKLPPGPQVFCSFIDCTH*LSFHDD
Trigger: GTCATCATGGAATGAAAGTCAATGAGTGCAATCAAT...AAAACTACAGAATACCTGAGGGCCAGGAGGTAGCTTTCTGAGACGCGTTTGAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159596.8
3UTR-3UTR CCA 90 bp CTTCTCCAAATCTGGATGGATGCCTGGAATAATTCCTCTGTCCTCTCTTATAACTCTTCTTCTTCCAACTaGGATATCAGATTTGGTTTA +
Preference number: 2 (lower is better)
Translates to: LLQIWMDAWNNSSVLSYNSSSSN*DIRFGL
Trigger: TAAACCAAATCTGATATCCCAGTTGGAAGAAGAAGA...GTTATAAGAGAGGACAGAGGAATTATTCCAGGCATCCATCCAGATTTGGAGAAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159596.8
3UTR-3UTR CCA 90 bp GATTTCTCTTCACTAATTTCATGGCAAGTTTCTCAAACGCGTCTCAGAAAGCTATACCTTCTCCAAATCTaGATGGATGCCTGGAATAAT +
Preference number: 2 (lower is better)
Translates to: DFSSLISWQVSQTRLRKLYLLQI*MDAWNN
Trigger: ATTATTCCAGGCATCCATCCAGATTTGGAGAAGGTA...TAGCTTTCTGAGACGCGTTTGAGAAACTTGCCATGAAATTAGTGAAGAGAAATC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159596.8
3UTR CAA 90 bp ATTGCACTCATTGACTTTCATTCCATGATGACCTCTTTCCTCCAGTaGTACTGTTTTTCCACCGTTATCATGTTCTTTACTAAAAATAAG +
Preference number: 2 (lower is better)
Translates to: IALIDFHSMMTSFLQ*YCFSTVIMFFTKNK
Trigger: CTTATTTTTAGTAAAGAACATGATAACGGTGGAAAAACAGTACAACTGGAGGAAAGAGGTCATCATGGAATGAAAGTCAATGAGTGCAAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000159596.8
3UTR-3UTR CAA 90 bp TCATGGCAAGTTTCTCAAACGCGTCTCAGAAAGCTACCTCCTGGCCCTCAGGTATCCTCTCTTATAACTTaGTCTTCTTCTTCCAACTGG +
Preference number: 3 (lower is better)
Translates to: SWQVSQTRLRKLPPGPQVSSLIT*SSSSNW
Trigger: CCAGTTGGAAGAAGAAGACAAAGTTATAAGAGAGGA...TACCTGAGGGCCAGGAGGTAGCTTTCTGAGACGCGTTTGAGAAACTTGCCATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159596.8
3UTR-3UTR CAA 90 bp AGCTACCTCCTGGCCCTCAGGTATTCTGTAGTTTTCTCTCACACAGTATCAAGGACCTCTTTCCTCCAGTaGTACTGTTTTTCCACCGTT +
Preference number: 3 (lower is better)
Translates to: SYLLALRYSVVFSHTVSRTSFLQ*YCFSTV
Trigger: AACGGTGGAAAAACAGTACAACTGGAGGAAAGAGGT...CCTTGATACTGTGTGAGAGAAAACTACAGAATACCTGAGGGCCAGGAGGTAGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159596.8
3UTR-3UTR CAA 90 bp TTCACTAATTTCATGGCAAGTTTCTCAAACGCGTCTCAGAAAGCTACCTCCTGGTTAGGAGTTAGCCATTaGGCTTTAAGTACCTTCTCC +
Preference number: 3 (lower is better)
Translates to: FTNFMASFSNASQKATSWLGVSH*ALSTFS
Trigger: GGAGAAGGTACTTAAAGCCAAATGGCTAACTCCTAA...CCAGGAGGTAGCTTTCTGAGACGCGTTTGAGAAACTTGCCATGAAATTAGTGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159596.8
CDS-3UTR CCA 90 bp GCAAGTTTCTCAAACGCGTCTCAGAAAGCTACCTCCTGGCCCTCAGGTATTCTGCAGGGGATCAGGTCATaGAAGCTGATGTGTGGGATG +
Preference number: 4 (lower is better)
Translates to: ASFSNASQKATSWPSGILQGIRS*KLMCGM
Trigger: CATCCCACACATCAGCTTCCATGACCTGATCCCCTG...CAGAATACCTGAGGGCCAGGAGGTAGCTTTCTGAGACGCGTTTGAGAAACTTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159596.8
CDS-3UTR CCA 90 bp TCACTAATTTCATGGCAAGTTTCTCAAACGCGTCTCAGAAAGCTACCTCCTGGCATGGAAGCTGATGTGTaGGATGATCAAGAGGGAACC +
Preference number: 4 (lower is better)
Translates to: SLISWQVSQTRLRKLPPGMEADV*DDQEGT
Trigger: GGTTCCCTCTTGATCATCCCACACATCAGCTTCCAT...GCCAGGAGGTAGCTTTCTGAGACGCGTTTGAGAAACTTGCCATGAAATTAGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159596.8
CDS-3UTR TCA 90 bp GATTTCTCTTCACTAATTTCATGGCAAGTTTCTCAAACGCGTCTCAGAAAGCTACAAGAGGGAACCAAGTaGGGCCAGGTTCTTCCAGTT +
Preference number: 4 (lower is better)
Translates to: DFSSLISWQVSQTRLRKLQEGTK*GQVLPV
Trigger: AACTGGAAGAACCTGGCCTCACTTGGTTCCCTCTTG...TAGCTTTCTGAGACGCGTTTGAGAAACTTGCCATGAAATTAGTGAAGAGAAATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159596.8
CDS CCA 90 bp ATAATTCCTCTGTCCTCTCTTATAACTTTGTCTTCTTCTTCCAACTaGGATATCAGATTTGGTTTATCAAGGTGCTGCCCAAGTGAGGCC +
Preference number: 5 (lower is better)
Translates to: IIPLSSLITLSSSSN*DIRFGLSRCCPSEA
Trigger: GGCCTCACTTGGGCAGCACCTTGATAAACCAAATCTGATATCCCAGTTGGAAGAAGAAGACAAAGTTATAAGAGAGGACAGAGGAATTAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034647.11
CDS CCA 72 bp GCTGCCTGTCTCCTAAGAATCCAGGGGATCAGGTCATaGAAGCTGATGTGTGGGATGATCAAGAGGGAACCA +
Preference number: 6 (lower is better)
Translates to: AACLLRIQGIRS*KLMCGMIKREP
Trigger: TGGTTCCCTCTTGATCATCCCACACATCAGCTTCCATGACCTGATCCCCTGGATTCTTAGGAGACAGGCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159596.8
CDS TCA 72 bp GGATATCAGATTTGGTTTATCAAGGTGCTGCCCAAGTaGGGCCAGGTTCTTCCAGTTTTCCAGCGTTACGTT +
Preference number: 6 (lower is better)
Translates to: GYQIWFIKVLPK*GQVLPVFQRYV
Trigger: AACGTAACGCTGGAAAACTGGAAGAACCTGGCCTCACTTGGGCAGCACCTTGATAAACCAAATCTGATATCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034647.11
CDS CAA 90 bp TCTGGATGGATGCCTGGAATAATTCCTCTGTCCTCTCTTATAACTTaGTCTTCTTCTTCCAACTGGGATATCAGATTTGGTTTATCAAGG +
Preference number: 6 (lower is better)
Translates to: SGWMPGIIPLSSLIT*SSSSNWDIRFGLSR
Trigger: CCTTGATAAACCAAATCTGATATCCCAGTTGGAAGAAGAAGACAAAGTTATAAGAGAGGACAGAGGAATTATTCCAGGCATCCATCCAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034647.11