Pregenerated sensors for ZFP54 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023882Ensembl transcript IDs: ENSMUST00000007884.15, ENSMUST00000165230.8, ENSMUST00000167749.2
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CTGACCACTGAGTGCACAACCATGCCTAAAATTATGAATTTTTGGATGCTGAACTATAATGTTGGGATTTaGACACAGAGAGAATACTGG | + |
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Preference number: 2 (lower is better) Translates to: LTTECTTMPKIMNFWMLNYNVGI*TQREYW Trigger: CCAGTATTCTCTCTGTGTTCAAATCCCAACATTATA...GTTCAGCATCCAAAAATTCATAATTTTAGGCATGGTTGTGCACTCAGTGGTCAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000165230.8 |
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| CDS-3UTR TCA 90 bp | CTGACCACTGAGTGCACAACCATGCCTAAAATTATGAATTTTTGGATGCTGAACGCAGTATGGATTTTCTaGTGTCTCTTCAGACCAGTA | + |
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Preference number: 4 (lower is better) Translates to: LTTECTTMPKIMNFWMLNAVWIF*CLFRPV Trigger: TACTGGTCTGAAGAGACATCAGAAAATCCATACTGC...GTTCAGCATCCAAAAATTCATAATTTTAGGCATGGTTGTGCACTCAGTGGTCAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000165230.8 |
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| CDS-3UTR CCA 90 bp | CTGACCACTGAGTGCACAACCATGCCTAAAATTATGAATTTTTGGATGCTGAACAATGTCAACAGACCCTaGGACAAGTTGACTGAAGAA | + |
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Preference number: 4 (lower is better) Translates to: LTTECTTMPKIMNFWMLNNVNRP*DKLTEE Trigger: TTCTTCAGTCAACTTGTCCCAGGGTCTGTTGACATT...GTTCAGCATCCAAAAATTCATAATTTTAGGCATGGTTGTGCACTCAGTGGTCAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000165230.8 |
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| CDS-3UTR CCA 90 bp | ATACATGTAGTGCACAGAGATGTAAGCAGCAAAGTGCACACATATAAGCATCCATGCTGGAACACAAACTaGAAGATTTCGCACAGTCTT | + |
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Preference number: 4 (lower is better) Translates to: IHVVHRDVSSKVHTYKHPCWNTN*KISHSL Trigger: AAGACTGTGCGAAATCTTCCAGTTTGTGTTCCAGCA...TGGATGCTTATATGTGTGCACTTTGCTGCTTACATCTCTGTGCACTACATGTAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165230.8 |
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| CDS-3UTR TCA 90 bp | ATACATGTAGTGCACAGAGATGTAAGCAGCAAAGTGCACACATATAAGCATCCATCAGTCTTCACATGTTaGCAGACTGTATCACATATG | + |
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Preference number: 4 (lower is better) Translates to: IHVVHRDVSSKVHTYKHPSVFTC*QTVSHM Trigger: CATATGTGATACAGTCTGTCAACATGTGAAGACTGA...TGGATGCTTATATGTGTGCACTTTGCTGCTTACATCTCTGTGCACTACATGTAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165230.8 |
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| CDS-3UTR TCA 90 bp | TTCAATTTCCAACATACATATAACAGCTCACAACTGTCATTAAGTCCAGCTTCACAGTTGGAGGGTTCATaGAGCATTTCACCAAGCTCA | + |
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Preference number: 4 (lower is better) Translates to: FNFQHTYNSSQLSLSPASQLEGS*SISPSS Trigger: TGAGCTTGGTGAAATGCTTCATGAACCCTCCAACTG...TGAAGCTGGACTTAATGACAGTTGTGAGCTGTTATATGTATGTTGGAAATTGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165230.8 |
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| CDS-3UTR TCA 90 bp | ATACATGTAGTGCACAGAGATGTAAGCAGCAAAGTGCACACATATAAGCATCCATGCACATGTAGTAAGTaGTTTGCCACATTCCTTACA | + |
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Preference number: 4 (lower is better) Translates to: IHVVHRDVSSKVHTYKHPCTCSK*FATFLT Trigger: TGTAAGGAATGTGGCAAATCACTTACTACATGTGCA...TGGATGCTTATATGTGTGCACTTTGCTGCTTACATCTCTGTGCACTACATGTAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165230.8 |
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| CDS-3UTR GCA 90 bp | ATACATGTAGTGCACAGAGATGTAAGCAGCAAAGTGCACACATATAAGCATCCACGTTCTTTTCCAGTGTaGGTGCTTTTAAGTCTATCT | + |
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Preference number: 4 (lower is better) Translates to: IHVVHRDVSSKVHTYKHPRSFPV*VLLSLS Trigger: AGATAGACTTAAAAGCACGCACACTGGAAAAGAACG...TGGATGCTTATATGTGTGCACTTTGCTGCTTACATCTCTGTGCACTACATGTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165230.8 |
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| CDS-3UTR CCA 90 bp | ATACATGTAGTGCACAGAGATGTAAGCAGCAAAGTGCACACATATAAGCATCCACTAAGTTGTGAGGCCTaGGTAAATGATTTGTCACAT | + |
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Preference number: 4 (lower is better) Translates to: IHVVHRDVSSKVHTYKHPLSCEA*VNDLSH Trigger: ATGTGACAAATCATTTACCCAGGCCTCACAACTTAG...TGGATGCTTATATGTGTGCACTTTGCTGCTTACATCTCTGTGCACTACATGTAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165230.8 |
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| CDS-3UTR TCA 90 bp | TCTTTGACTCTGACCACTGAGTGCACAACCATGCCTAAAATTATGAATTTTTGGGTATGGAGTGTGAAATaGCTTTTAAAGTGTGAAAGC | + |
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Preference number: 4 (lower is better) Translates to: SLTLTTECTTMPKIMNFWVWSVK*LLKCES Trigger: GCTTTCACACTTTAAAAGTCATTTCACACTCCATAC...CCAAAAATTCATAATTTTAGGCATGGTTGTGCACTCAGTGGTCAGAGTCAAAGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000165230.8 |
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| CDS-3UTR TCA 90 bp | TTCAATTTCCAACATACATATAACAGCTCACAACTGTCATTAAGTCCAGCTTCAATGTCTGCTGAGACTTaGGGACAGAGTAAACCATTT | + |
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Preference number: 4 (lower is better) Translates to: FNFQHTYNSSQLSLSPASMSAET*GQSKPF Trigger: AAATGGTTTACTCTGTCCTCAAGTCTCAGCAGACAT...TGAAGCTGGACTTAATGACAGTTGTGAGCTGTTATATGTATGTTGGAAATTGAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165230.8 |
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| CDS-3UTR GCA 90 bp | TCTTTGACTCTGACCACTGAGTGCACAACCATGCCTAAAATTATGAATTTTTGGAGACTGTATCACATATaGAGTAGTTCTCGACATATA | + |
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Preference number: 4 (lower is better) Translates to: SLTLTTECTTMPKIMNFWRLYHI*SSSRHI Trigger: TATATGTCGAGAACTACTGCATATGTGATACAGTCT...CCAAAAATTCATAATTTTAGGCATGGTTGTGCACTCAGTGGTCAGAGTCAAAGA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000165230.8 |
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| CDS-3UTR CCA 90 bp | TTCAATTTCCAACATACATATAACAGCTCACAACTGTCATTAAGTCCAGCTTCATATAAAGGGCACAGTTaGAGGGTTCATGAAGCATTT | + |
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Preference number: 4 (lower is better) Translates to: FNFQHTYNSSQLSLSPASYKGHS*RVHEAF Trigger: AAATGCTTCATGAACCCTCCAACTGTGCCCTTTATA...TGAAGCTGGACTTAATGACAGTTGTGAGCTGTTATATGTATGTTGGAAATTGAA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165230.8 |
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| CDS-3UTR CCA 90 bp | TTCAATTTCCAACATACATATAACAGCTCACAACTGTCATTAAGTCCAGCTTCACCATATTTCATACACTaGTGTGGATTCTCTCCAATA | + |
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Preference number: 4 (lower is better) Translates to: FNFQHTYNSSQLSLSPASPYFIH*CGFSPI Trigger: TATTGGAGAGAATCCACACCAGTGTATGAAATATGG...TGAAGCTGGACTTAATGACAGTTGTGAGCTGTTATATGTATGTTGGAAATTGAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165230.8 |
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| CDS-3UTR GCA 90 bp | ATTAAGTCAAGGAGTCACTATTTCAGGAACAAAGAATCTGGGTATAATAGCTCAACTATAACATTCCTCTaGAGTATGGATTTTCTGATG | + |
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Preference number: 4 (lower is better) Translates to: IKSRSHYFRNKESGYNSSTITFL*SMDFLM Trigger: CATCAGAAAATCCATACTGCAGAGGAATGTTATAGT...TGAGCTATTATACCCAGATTCTTTGTTCCTGAAATAGTGACTCCTTGACTTAAT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165230.8 |
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| CDS TCA 90 bp | TTCCAGTATCAGTTCTCTGCTGTACCCCGAGGCTTGAGGCACTACTaGAACATTTCCCATATTTCATACACTGGTGTGGATTCTCTCCAA | + |
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Preference number: 5 (lower is better) Translates to: FQYQFSAVPRGLRHY*NISHISYTGVDSLQ Trigger: TTGGAGAGAATCCACACCAGTGTATGAAATATGGGAAATGTTTCAGTAGTGCCTCAAGCCTCGGGGTACAGCAGAGAACTGATACTGGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000007884.15 ENSMUST00000165230.8 ENSMUST00000167749.2 |
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| CDS GCA 90 bp | GAAGATTTCGCACAGTCTTTAGATTCACAACGTTCTTTTCCAGTGTaGGTGCTTTTAAGTCTATCTGGGTTTGATGAGTCAAGAGAGGCA | + |
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Preference number: 5 (lower is better) Translates to: EDFAQSLDSQRSFPV*VLLSLSGFDESREA Trigger: TGCCTCTCTTGACTCATCAAACCCAGATAGACTTAAAAGCACGCACACTGGAAAAGAACGTTGTGAATCTAAAGACTGTGCGAAATCTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000007884.15 ENSMUST00000165230.8 ENSMUST00000167749.2 |
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| CDS-3UTR CAA 90 bp | ATACATGTAGTGCACAGAGATGTAAGCAGCAAAGTGCACACATATAAGCATCCACCCCTAGTAAAAGACTaGCCACACTGTTTACACGTA | + |
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Preference number: 5 (lower is better) Translates to: IHVVHRDVSSKVHTYKHPPLVKD*PHCLHV Trigger: TACGTGTAAACAGTGTGGCAAGTCTTTTACTAGGGG...TGGATGCTTATATGTGTGCACTTTGCTGCTTACATCTCTGTGCACTACATGTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165230.8 |
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| CDS-3UTR CAA 90 bp | CTGACCACTGAGTGCACAACCATGCCTAAAATTATGAATTTTTGGATGCTGAACGACCTTGCCACAGTATaGACAACTATAACATTCCTC | + |
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Preference number: 5 (lower is better) Translates to: LTTECTTMPKIMNFWMLNDLATV*TTITFL Trigger: GAGGAATGTTATAGTTGTCAATACTGTGGCAAGGTC...GTTCAGCATCCAAAAATTCATAATTTTAGGCATGGTTGTGCACTCAGTGGTCAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000165230.8 |
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| CDS-3UTR CAA 90 bp | TCTTTGACTCTGACCACTGAGTGCACAACCATGCCTAAAATTATGAATTTTTGGGTTTGTTCTCTGATCTaGAGCAATGCTGGAACACAA | + |
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Preference number: 5 (lower is better) Translates to: SLTLTTECTTMPKIMNFWVCSLI*SNAGTQ Trigger: TTGTGTTCCAGCATTGCTCAAGATCAGAGAACAAAC...CCAAAAATTCATAATTTTAGGCATGGTTGTGCACTCAGTGGTCAGAGTCAAAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000165230.8 |
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| CDS-3UTR CAA 90 bp | TCTTTGACTCTGACCACTGAGTGCACAACCATGCCTAAAATTATGAATTTTTGGTCCAGCACGAAGTCTTaGATGTGTTTTTCGATGTTC | + |
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Preference number: 5 (lower is better) Translates to: SLTLTTECTTMPKIMNFWSSTKS*MCFSMF Trigger: GAACATCGAAAAACACATCAAAGACTTCGTGCTGGA...CCAAAAATTCATAATTTTAGGCATGGTTGTGCACTCAGTGGTCAGAGTCAAAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000165230.8 |
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| CDS-3UTR CAA 90 bp | ATACATGTAGTGCACAGAGATGTAAGCAGCAAAGTGCACACATATAAGCATCCACCACACTCTTTGCATTaGTGTGATTTCTGTAGAGAA | + |
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Preference number: 5 (lower is better) Translates to: IHVVHRDVSSKVHTYKHPPHSLH*CDFCRE Trigger: TTCTCTACAGAAATCACACAAATGCAAAGAGTGTGG...TGGATGCTTATATGTGTGCACTTTGCTGCTTACATCTCTGTGCACTACATGTAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165230.8 |
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| CDS TCA 90 bp | TCCAGCACGAAGTCTTTGATGTGTTTTTCGATGTTCTTTAAGACTTaGGCACTCAGTAAAGGATTTGTCACAAATATTGCACTTGTAGGG | + |
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Preference number: 5 (lower is better) Translates to: SSTKSLMCFSMFFKT*ALSKGFVTNIALVG Trigger: CCCTACAAGTGCAATATTTGTGACAAATCCTTTACTGAGTGCTCAAGTCTTAAAGAACATCGAAAAACACATCAAAGACTTCGTGCTGGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000007884.15 ENSMUST00000165230.8 |
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| CDS-3UTR CAA 90 bp | TCTTTGACTCTGACCACTGAGTGCACAACCATGCCTAAAATTATGAATTTTTGGTCCAATATAGATTGCTaGTTGCATGAGACTGTGTGT | + |
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Preference number: 5 (lower is better) Translates to: SLTLTTECTTMPKIMNFWSNIDC*LHETVC Trigger: ACACACAGTCTCATGCAACAAGCAATCTATATTGGA...CCAAAAATTCATAATTTTAGGCATGGTTGTGCACTCAGTGGTCAGAGTCAAAGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000165230.8 |
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| CDS-3UTR CAA 90 bp | CTGACCACTGAGTGCACAACCATGCCTAAAATTATGAATTTTTGGATGCTGAACCACTCAGTAAAGGATTaGTCACAAATATTGCACTTG | + |
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Preference number: 5 (lower is better) Translates to: LTTECTTMPKIMNFWMLNHSVKD*SQILHL Trigger: CAAGTGCAATATTTGTGACAAATCCTTTACTGAGTG...GTTCAGCATCCAAAAATTCATAATTTTAGGCATGGTTGTGCACTCAGTGGTCAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000165230.8 |
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| CDS-3UTR CAA 90 bp | TCTTTGACTCTGACCACTGAGTGCACAACCATGCCTAAAATTATGAATTTTTGGCATGTAGTAAGTGATTaGCCACATTCCTTACATACA | + |
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Preference number: 5 (lower is better) Translates to: SLTLTTECTTMPKIMNFWHVVSD*PHSLHT Trigger: TGTATGTAAGGAATGTGGCAAATCACTTACTACATG...CCAAAAATTCATAATTTTAGGCATGGTTGTGCACTCAGTGGTCAGAGTCAAAGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000165230.8 |
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| CDS-3UTR CAA 90 bp | ATTAAGTCAAGGAGTCACTATTTCAGGAACAAAGAATCTGGGTATAATAGCTCATCCTGTCTCTGTTCTTaGTTTGTACTGTTTGTTCTC | + |
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Preference number: 5 (lower is better) Translates to: IKSRSHYFRNKESGYNSSSCLCS*FVLFVL Trigger: GAGAACAAACAGTACAAACAAAGAACAGAGACAGGA...TGAGCTATTATACCCAGATTCTTTGTTCCTGAAATAGTGACTCCTTGACTTAAT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165230.8 |
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| CDS-3UTR CAA 90 bp | ATTAAGTCAAGGAGTCACTATTTCAGGAACAAAGAATCTGGGTATAATAGCTCAGACAGAGTAAACCATTaGTCACATACCTCACATCTA | + |
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Preference number: 5 (lower is better) Translates to: IKSRSHYFRNKESGYNSSDRVNH*SHTSHL Trigger: TAGATGTGAGGTATGTGACAAATGGTTTACTCTGTC...TGAGCTATTATACCCAGATTCTTTGTTCCTGAAATAGTGACTCCTTGACTTAAT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165230.8 |
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| CDS-3UTR CAA 90 bp | TTCAATTTCCAACATACATATAACAGCTCACAACTGTCATTAAGTCCAGCTTCATTCAGTCTTCACATGTaGACAGACTGTATCACATAT | + |
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Preference number: 5 (lower is better) Translates to: FNFQHTYNSSQLSLSPASFSLHM*TDCITY Trigger: ATATGTGATACAGTCTGTCAACATGTGAAGACTGAA...TGAAGCTGGACTTAATGACAGTTGTGAGCTGTTATATGTATGTTGGAAATTGAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165230.8 |
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| CDS-3UTR CAA 90 bp | ATTAAGTCAAGGAGTCACTATTTCAGGAACAAAGAATCTGGGTATAATAGCTCACTTTGTTTGTACTGTTaGTTCTCTGATCTTGAGCAA | + |
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Preference number: 5 (lower is better) Translates to: IKSRSHYFRNKESGYNSSLCLYC*FSDLEQ Trigger: TTGCTCAAGATCAGAGAACAAACAGTACAAACAAAG...TGAGCTATTATACCCAGATTCTTTGTTCCTGAAATAGTGACTCCTTGACTTAAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165230.8 |
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| CDS-3UTR CAA 90 bp | ATTAAGTCAAGGAGTCACTATTTCAGGAACAAAGAATCTGGGTATAATAGCTCAGTCTCTGTTCTTTGTTaGTACTGTTTGTTCTCTGAT | + |
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Preference number: 5 (lower is better) Translates to: IKSRSHYFRNKESGYNSSVSVLC*YCLFSD Trigger: ATCAGAGAACAAACAGTACAAACAAAGAACAGAGAC...TGAGCTATTATACCCAGATTCTTTGTTCCTGAAATAGTGACTCCTTGACTTAAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165230.8 |
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| CDS-3UTR CAA 90 bp | ATTAAGTCAAGGAGTCACTATTTCAGGAACAAAGAATCTGGGTATAATAGCTCAAATATAGATTGCTTGTaGCATGAGACTGTGTGTAGA | + |
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Preference number: 5 (lower is better) Translates to: IKSRSHYFRNKESGYNSSNIDCL*HETVCR Trigger: TCTACACACAGTCTCATGCAACAAGCAATCTATATT...TGAGCTATTATACCCAGATTCTTTGTTCCTGAAATAGTGACTCCTTGACTTAAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165230.8 |
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| CDS TCA 72 bp | CAGTTCTCTGCTGTACCCCGAGGCTTGAGGCACTACTaGAACATTTCCCATATTTCATACACTGGTGTGGAT | + |
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Preference number: 6 (lower is better) Translates to: QFSAVPRGLRHY*NISHISYTGVD Trigger: ATCCACACCAGTGTATGAAATATGGGAAATGTTTCAGTAGTGCCTCAAGCCTCGGGGTACAGCAGAGAACTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000007884.15 ENSMUST00000165230.8 ENSMUST00000167749.2 |
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| CDS GCA 72 bp | GCACAGTCTTTAGATTCACAACGTTCTTTTCCAGTGTaGGTGCTTTTAAGTCTATCTGGGTTTGATGAGTCA | + |
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Preference number: 6 (lower is better) Translates to: AQSLDSQRSFPV*VLLSLSGFDES Trigger: TGACTCATCAAACCCAGATAGACTTAAAAGCACGCACACTGGAAAAGAACGTTGTGAATCTAAAGACTGTGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000007884.15 ENSMUST00000165230.8 ENSMUST00000167749.2 |
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| CDS CAA 90 bp | CATTTCACCAAGCTCATTACAAGACTCCTTTTCAGTCTTCACATGTaGACAGACTGTATCACATATGCAGTAGTTCTCGACATATACCAG | + |
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Preference number: 6 (lower is better) Translates to: HFTKLITRLLFSLHM*TDCITYAVVLDIYQ Trigger: CTGGTATATGTCGAGAACTACTGCATATGTGATACAGTCTGTCAACATGTGAAGACTGAAAAGGAGTCTTGTAATGAGCTTGGTGAAATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000007884.15 ENSMUST00000165230.8 ENSMUST00000167749.2 |
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| CDS CAA 72 bp | AAGCTCATTACAAGACTCCTTTTCAGTCTTCACATGTaGACAGACTGTATCACATATGCAGTAGTTCTCGAC | + |
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Preference number: 6 (lower is better) Translates to: KLITRLLFSLHM*TDCITYAVVLD Trigger: GTCGAGAACTACTGCATATGTGATACAGTCTGTCAACATGTGAAGACTGAAAAGGAGTCTTGTAATGAGCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000007884.15 ENSMUST00000165230.8 ENSMUST00000167749.2 |
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| CDS CAA 72 bp | TCTCTGTTCTTTGTTTGTACTGTTTGTTCTCTGATCTaGAGCAATGCTGGAACACAAACTGGAAGATTTCGC | + |
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Preference number: 6 (lower is better) Translates to: SLFFVCTVCSLI*SNAGTQTGRFR Trigger: GCGAAATCTTCCAGTTTGTGTTCCAGCATTGCTCAAGATCAGAGAACAAACAGTACAAACAAAGAACAGAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000007884.15 ENSMUST00000165230.8 ENSMUST00000167749.2 |
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| CDS GCA 72 bp | TTTCAGTCTTCACATGTTGACAGACTGTATCACATATaGAGTAGTTCTCGACATATACCAGGTTGCTGTAAT | + |
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Preference number: 6 (lower is better) Translates to: FQSSHVDRLYHI*SSSRHIPGCCN Trigger: ATTACAGCAACCTGGTATATGTCGAGAACTACTGCATATGTGATACAGTCTGTCAACATGTGAAGACTGAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000007884.15 ENSMUST00000165230.8 ENSMUST00000167749.2 |
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| CDS GCA 72 bp | TTTCATACACTGGTGTGGATTCTCTCCAATATAGATTaGTTGTTGCATGAGACTGTGTGTAGAGATGAAATG | + |
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Preference number: 6 (lower is better) Translates to: FHTLVWILSNID*LLHETVCRDEM Trigger: CATTTCATCTCTACACACAGTCTCATGCAACAAGCAATCTATATTGGAGAGAATCCACACCAGTGTATGAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000007884.15 ENSMUST00000165230.8 ENSMUST00000167749.2 |
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