RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZFP518B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000046572

Ensembl transcript IDs: ENSMUST00000057258.11, ENSMUST00000179555.8, ENSMUST00000180214.8

Found 318 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TTTGAGCGGGAGGGTTGGTTACCAGGCTGCACCACAGATCAGACTTaGGACTGCTTGGCATCACATGGCCACAGAGCAGCAGGCAGGACG +
Preference number: 1 (lower is better)
Translates to: FEREGWLPGCTTDQT*DCLASHGHRAAGRT
Trigger: CGTCCTGCCTGCTGCTCTGTGGCCATGTGATGCCAAGCAGTCTCAAGTCTGATCTGTGGTGCAGCCTGGTAACCAACCCTCCCGCTCAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR GCA 90 bp GACTGCTTGGCATCACATGGCCACAGAGCAGCAGGCAGGACGAAATaGTGCAATACAGTGACCCACAGGGGCTGGCTACTCCAGGTTGCT +
Preference number: 1 (lower is better)
Translates to: DCLASHGHRAAGRTK*CNTVTHRGWLLQVA
Trigger: AGCAACCTGGAGTAGCCAGCCCCTGTGGGTCACTGTATTGCAGCATTTCGTCCTGCCTGCTGCTCTGTGGCCATGTGATGCCAAGCAGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR GCA 90 bp TGCTTGGCATCACATGGCCACAGAGCAGCAGGCAGGACGAAATGCTaGAATACAGTGACCCACAGGGGCTGGCTACTCCAGGTTGCTCAT +
Preference number: 1 (lower is better)
Translates to: CLASHGHRAAGRTKC*NTVTHRGWLLQVAH
Trigger: ATGAGCAACCTGGAGTAGCCAGCCCCTGTGGGTCACTGTATTGCAGCATTTCGTCCTGCCTGCTGCTCTGTGGCCATGTGATGCCAAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR CCA 90 bp CTTTCAATCAAAACCAGTAGAATTTCAGGGGCTCCCACCTTTCCCTaGTCCAGCCACAGAGCTCAGGTAAGGACAGGGCTCTCACCCTTC +
Preference number: 1 (lower is better)
Translates to: LSIKTSRISGAPTFP*SSHRAQVRTGLSPF
Trigger: GAAGGGTGAGAGCCCTGTCCTTACCTGAGCTCTGTGGCTGGACCAGGGAAAGGTGGGAGCCCCTGAAATTCTACTGGTTTTGATTGAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR GCA 90 bp GTCACTGGCTGGTCACTGGTTAGTGCCCTTTGCCTGAGCTGCTCTTaGCCAGGAAGCCCTACCCATGTAGGAGATAAACTTTCTCCTAAT +
Preference number: 1 (lower is better)
Translates to: VTGWSLVSALCLSCS*PGSPTHVGDKLSPN
Trigger: ATTAGGAGAAAGTTTATCTCCTACATGGGTAGGGCTTCCTGGGCAAGAGCAGCTCAGGCAAAGGGCACTAACCAGTGACCAGCCAGTGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR GCA 90 bp GAAATGCTGCAATACAGTGACCCACAGGGGCTGGCTACTCCAGGTTaGTCATGGGAATCAGGTCCCATCAGTTACTGTGCTTTCATTTTC +
Preference number: 1 (lower is better)
Translates to: EMLQYSDPQGLATPG*SWESGPISYCAFIF
Trigger: GAAAATGAAAGCACAGTAACTGATGGGACCTGATTCCCATGAGCAACCTGGAGTAGCCAGCCCCTGTGGGTCACTGTATTGCAGCATTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR TCA 90 bp GGAGATAAACTTTCTCCTAATGTGCAAAGGTGCCTTGTAGATCGCTaGGTCTTAACACCTCTTGGTGGAGGGGCAGTCCTATTAGAAAAT +
Preference number: 1 (lower is better)
Translates to: GDKLSPNVQRCLVDR*VLTPLGGGAVLLEN
Trigger: ATTTTCTAATAGGACTGCCCCTCCACCAAGAGGTGTTAAGACTCAGCGATCTACAAGGCACCTTTGCACATTAGGAGAAAGTTTATCTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR TCA 90 bp TCTGCTCATAAAGACATTCACAGATTCAAAAGTCCTTCTGAAGGCTaGGCAACACCGTACCTTCATCTTCCGGGTGGCTTATGTAAATTC +
Preference number: 1 (lower is better)
Translates to: SAHKDIHRFKSPSEG*ATPYLHLPGGLCKF
Trigger: GAATTTACATAAGCCACCCGGAAGATGAAGGTACGGTGTTGCTCAGCCTTCAGAAGGACTTTTGAATCTGTGAATGTCTTTATGAGCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR CCA 90 bp TCTATTACGCAGCAACTATTCTGGAAGAGTAAAGCAAAATCAAAGTaGATGTGTGCCCCAAGACACACCCTTCAGCAGCATTTATCCACA +
Preference number: 1 (lower is better)
Translates to: SITQQLFWKSKAKSK*MCAPRHTLQQHLST
Trigger: TGTGGATAAATGCTGCTGAAGGGTGTGTCTTGGGGCACACATCCACTTTGATTTTGCTTTACTCTTCCAGAATAGTTGCTGCGTAATAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR TCA 90 bp CAGAGCGACAGACACACAAACTGTTCACACGGGAGCTGTAATGCTTaGCATGGTAAGACAAAGTTTTGTTTTCTGCTCATAAAGACATTC +
Preference number: 1 (lower is better)
Translates to: QSDRHTNCSHGSCNA*HGKTKFCFLLIKTF
Trigger: GAATGTCTTTATGAGCAGAAAACAAAACTTTGTCTTACCATGTCAAGCATTACAGCTCCCGTGTGAACAGTTTGTGTGTCTGTCGCTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR TCA 90 bp TCCACAAAGTGTGTCAATCGTAAACCCACCCCTCTAAGTGGACTATaGAAGATGTGTCTACTCAGAAAAATAAGAACTAAGCAAGGAAGG +
Preference number: 1 (lower is better)
Translates to: STKCVNRKPTPLSGL*KMCLLRKIRTKQGR
Trigger: CCTTCCTTGCTTAGTTCTTATTTTTCTGAGTAGACACATCTTTCATAGTCCACTTAGAGGGGTGGGTTTACGATTGACACACTTTGTGGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR TCA 90 bp ACTAACCCCAGCTCCATACAAGTCCTAGCTATTTTAGATAATACTTaGAAACAGCAGCTGTTGCAGCAGAGTGTAAGGATTCTGTTGATG +
Preference number: 1 (lower is better)
Translates to: TNPSSIQVLAILDNT*KQQLLQQSVRILLM
Trigger: CATCAACAGAATCCTTACACTCTGCTGCAACAGCTGCTGTTTTCAAGTATTATCTAAAATAGCTAGGACTTGTATGGAGCTGGGGTTAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR-3UTR CCA 90 bp CTCCGCAGAGCACAGCTAGAACTCACAGTGGGAGGGGCCAAGTACAGCTCTCTAGCTCCCACCTTTCCCTaGTCCAGCCACAGAGCTCAG +
Preference number: 2 (lower is better)
Translates to: LRRAQLELTVGGAKYSSLAPTFP*SSHRAQ
Trigger: CTGAGCTCTGTGGCTGGACCAGGGAAAGGTGGGAGC...TAGAGAGCTGTACTTGGCCCCTCCCACTGTGAGTTCTAGCTGTGCTCTGCGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR-3UTR TCA 90 bp CTCACGGCTCCGCAGAGCACAGCTAGAACTCACAGTGGGAGGGGCCAAGTACAGGGCCTCAGATCCCACTaGAAACCTGTGGAGAACATT +
Preference number: 2 (lower is better)
Translates to: LTAPQSTARTHSGRGQVQGLRSH*KPVENI
Trigger: AATGTTCTCCACAGGTTTTCAGTGGGATCTGAGGCC...CTGTACTTGGCCCCTCCCACTGTGAGTTCTAGCTGTGCTCTGCGGAGCCGTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR-3UTR GCA 90 bp ACGAAATGCTGCAATACAGTGACCCACAGGGGCTGGCTACTCCAGGTTGCTCATTGCCTGAGCTGCTCTTaGCCAGGAAGCCCTACCCAT +
Preference number: 2 (lower is better)
Translates to: TKCCNTVTHRGWLLQVAHCLSCS*PGSPTH
Trigger: ATGGGTAGGGCTTCCTGGGCAAGAGCAGCTCAGGCA...ATGAGCAACCTGGAGTAGCCAGCCCCTGTGGGTCACTGTATTGCAGCATTTCGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR-3UTR GCA 90 bp GCAGAGTGTAAGGATTCTGTTGATGCTGATCTGTGGCAGCTCTTGGTCGAGTCGTGCCTGAGCTGCTCTTaGCCAGGAAGCCCTACCCAT +
Preference number: 2 (lower is better)
Translates to: AECKDSVDADLWQLLVESCLSCS*PGSPTH
Trigger: ATGGGTAGGGCTTCCTGGGCAAGAGCAGCTCAGGCA...CGACTCGACCAAGAGCTGCCACAGATCAGCATCAACAGAATCCTTACACTCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR-3UTR GCA 90 bp ACGAAATGCTGCAATACAGTGACCCACAGGGGCTGGCTACTCCAGGTTGCTCATCTGGTTAGTGCCCTTTaGCTGAGCTGCTCTTGCCCA +
Preference number: 2 (lower is better)
Translates to: TKCCNTVTHRGWLLQVAHLVSAL*LSCSCP
Trigger: TGGGCAAGAGCAGCTCAGGCAAAGGGCACTAACCAG...ATGAGCAACCTGGAGTAGCCAGCCCCTGTGGGTCACTGTATTGCAGCATTTCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR-3UTR CCA 90 bp GCAGAGTGTAAGGATTCTGTTGATGCTGATCTGTGGCAGCTCTTGGTCGAGTCGCTGCTTGGCATCACATaGCCACAGAGCAGCAGGCAG +
Preference number: 2 (lower is better)
Translates to: AECKDSVDADLWQLLVESLLGIT*PQSSRQ
Trigger: CTGCCTGCTGCTCTGTGGCCATGTGATGCCAAGCAG...CGACTCGACCAAGAGCTGCCACAGATCAGCATCAACAGAATCCTTACACTCTGC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR-3UTR CCA 90 bp CTCACGGCTCCGCAGAGCACAGCTAGAACTCACAGTGGGAGGGGCCAAGTACAGAAAGCAAAATCAAAGTaGATGTGTGCCCCAAGACAC +
Preference number: 2 (lower is better)
Translates to: LTAPQSTARTHSGRGQVQKAKSK*MCAPRH
Trigger: GTGTCTTGGGGCACACATCCACTTTGATTTTGCTTT...CTGTACTTGGCCCCTCCCACTGTGAGTTCTAGCTGTGCTCTGCGGAGCCGTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR-3UTR CCA 90 bp AAAATCAAAGTGGATGTGTGCCCCAAGACACACCCTTCAGCAGCATTTATCCACGCTCCCACCTTTCCCTaGTCCAGCCACAGAGCTCAG +
Preference number: 2 (lower is better)
Translates to: KIKVDVCPKTHPSAAFIHAPTFP*SSHRAQ
Trigger: CTGAGCTCTGTGGCTGGACCAGGGAAAGGTGGGAGC...GTGGATAAATGCTGCTGAAGGGTGTGTCTTGGGGCACACATCCACTTTGATTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR-3UTR TCA 90 bp CTGATACACGCCCAATTAAAGCAAAGCTCACGGCTCCGCAGAGCACAGCTAGAATGCCACCCTAAGCCATaGAAACTAGAAGAAAATCGA +
Preference number: 2 (lower is better)
Translates to: LIHAQLKQSSRLRRAQLECHPKP*KLEENR
Trigger: TCGATTTTCTTCTAGTTTTCATGGCTTAGGGTGGCA...TTCTAGCTGTGCTCTGCGGAGCCGTGAGCTTTGCTTTAATTGGGCGTGTATCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR-3UTR TCA 90 bp GTAAAGCAAAATCAAAGTGGATGTGTGCCCCAAGACACACCCTTCAGCAGCATTGGCCTCAGATCCCACTaGAAACCTGTGGAGAACATT +
Preference number: 2 (lower is better)
Translates to: VKQNQSGCVPQDTPFSSIGLRSH*KPVENI
Trigger: AATGTTCTCCACAGGTTTTCAGTGGGATCTGAGGCC...AATGCTGCTGAAGGGTGTGTCTTGGGGCACACATCCACTTTGATTTTGCTTTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR-3UTR CCA 90 bp CTGATACACGCCCAATTAAAGCAAAGCTCACGGCTCCGCAGAGCACAGCTAGAACCCACTGAAAACCTGTaGAGAACATTACATCCTTTC +
Preference number: 2 (lower is better)
Translates to: LIHAQLKQSSRLRRAQLEPTENL*RTLHPF
Trigger: GAAAGGATGTAATGTTCTCCACAGGTTTTCAGTGGG...TTCTAGCTGTGCTCTGCGGAGCCGTGAGCTTTGCTTTAATTGGGCGTGTATCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR-3UTR TCA 90 bp TCTATATACAAACATGTTTCCGAACCAGAGCGACAGACACACAAACTGTTCACAAATGCTGCAATACAGTaGCCCACAGGGGCTGGCTAC +
Preference number: 2 (lower is better)
Translates to: SIYKHVSEPERQTHKLFTNAAIQ*PTGAGY
Trigger: GTAGCCAGCCCCTGTGGGTCACTGTATTGCAGCATT...TGTGAACAGTTTGTGTGTCTGTCGCTCTGGTTCGGAAACATGTTTGTATATAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR-3UTR GCA 90 bp TCTATATACAAACATGTTTCCGAACCAGAGCGACAGACACACAAACTGTTCACACTGGTTAGTGCCCTTTaGCTGAGCTGCTCTTGCCCA +
Preference number: 2 (lower is better)
Translates to: SIYKHVSEPERQTHKLFTLVSAL*LSCSCP
Trigger: TGGGCAAGAGCAGCTCAGGCAAAGGGCACTAACCAG...TGTGAACAGTTTGTGTGTCTGTCGCTCTGGTTCGGAAACATGTTTGTATATAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR-3UTR TCA 90 bp GTAAAGCAAAATCAAAGTGGATGTGTGCCCCAAGACACACCCTTCAGCAGCATTTGCCACCCTAAGCCATaGAAACTAGAAGAAAATCGA +
Preference number: 2 (lower is better)
Translates to: VKQNQSGCVPQDTPFSSICHPKP*KLEENR
Trigger: TCGATTTTCTTCTAGTTTTCATGGCTTAGGGTGGCA...AATGCTGCTGAAGGGTGTGTCTTGGGGCACACATCCACTTTGATTTTGCTTTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR-3UTR CCA 90 bp TCTATATACAAACATGTTTCCGAACCAGAGCGACAGACACACAAACTGTTCACAAGATCCTTTCATTTCTaGTCCCCCAAAGTAAGAAAA +
Preference number: 2 (lower is better)
Translates to: SIYKHVSEPERQTHKLFTRSFHF*SPKVRK
Trigger: TTTTCTTACTTTGGGGGACCAGAAATGAAAGGATCT...TGTGAACAGTTTGTGTGTCTGTCGCTCTGGTTCGGAAACATGTTTGTATATAGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR-3UTR CCA 90 bp TCTATATACAAACATGTTTCCGAACCAGAGCGACAGACACACAAACTGTTCACAATGGCCATTTATGTTTaGTGGAGTATTAGATGCAAA +
Preference number: 2 (lower is better)
Translates to: SIYKHVSEPERQTHKLFTMAIYV*WSIRCK
Trigger: TTTGCATCTAATACTCCACCAAACATAAATGGCCAT...TGTGAACAGTTTGTGTGTCTGTCGCTCTGGTTCGGAAACATGTTTGTATATAGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR GCA 72 bp CTCAAGGTCACTGGCTGGTCACTGGTTAGTGCCCTTTaGCTGAGCTGCTCTTGCCCAGGAAGCCCTACCCAT +
Preference number: 3 (lower is better)
Translates to: LKVTGWSLVSAL*LSCSCPGSPTH
Trigger: ATGGGTAGGGCTTCCTGGGCAAGAGCAGCTCAGGCAAAGGGCACTAACCAGTGACCAGCCAGTGACCTTGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR GCA 72 bp TCACATGGCCACAGAGCAGCAGGCAGGACGAAATGCTaGAATACAGTGACCCACAGGGGCTGGCTACTCCAG +
Preference number: 3 (lower is better)
Translates to: SHGHRAAGRTKC*NTVTHRGWLLQ
Trigger: CTGGAGTAGCCAGCCCCTGTGGGTCACTGTATTGCAGCATTTCGTCCTGCCTGCTGCTCTGTGGCCATGTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR GCA 72 bp GCATCACATGGCCACAGAGCAGCAGGCAGGACGAAATaGTGCAATACAGTGACCCACAGGGGCTGGCTACTC +
Preference number: 3 (lower is better)
Translates to: ASHGHRAAGRTK*CNTVTHRGWLL
Trigger: GAGTAGCCAGCCCCTGTGGGTCACTGTATTGCAGCATTTCGTCCTGCCTGCTGCTCTGTGGCCATGTGATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR-3UTR CAA 90 bp ACGAAATGCTGCAATACAGTGACCCACAGGGGCTGGCTACTCCAGGTTGCTCATTTGCCTGAGCTGCTCTaGCCCAGGAAGCCCTACCCA +
Preference number: 3 (lower is better)
Translates to: TKCCNTVTHRGWLLQVAHLPELL*PRKPYP
Trigger: TGGGTAGGGCTTCCTGGGCAAGAGCAGCTCAGGCAA...ATGAGCAACCTGGAGTAGCCAGCCCCTGTGGGTCACTGTATTGCAGCATTTCGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR TCA 72 bp ACAGAGCAGCAGGCAGGACGAAATGCTGCAATACAGTaGCCCACAGGGGCTGGCTACTCCAGGTTGCTCATG +
Preference number: 3 (lower is better)
Translates to: TEQQAGRNAAIQ*PTGAGYSRLLM
Trigger: CATGAGCAACCTGGAGTAGCCAGCCCCTGTGGGTCACTGTATTGCAGCATTTCGTCCTGCCTGCTGCTCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR GCA 72 bp ATGTGCACGGAGACTAGGCTCTTCCCCAGGAAGGCCTaGTCAGGAACAGGCAAAAGGAGAACAGATCTGGCC +
Preference number: 3 (lower is better)
Translates to: MCTETRLFPRKA*SGTGKRRTDLA
Trigger: GGCCAGATCTGTTCTCCTTTTGCCTGTTCCTGAGCAGGCCTTCCTGGGGAAGAGCCTAGTCTCCGTGCACAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR CCA 72 bp GGGAGCAGCCCTATGATCCTATGCTCAAGTGTGTGCTaGCACACTCTCAGGCTTTGCACTGAGTCCCCAGGT +
Preference number: 3 (lower is better)
Translates to: GSSPMILCSSVC*HTLRLCTESPG
Trigger: ACCTGGGGACTCAGTGCAAAGCCTGAGAGTGTGCCAGCACACACTTGAGCATAGGATCATAGGGCTGCTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR CCA 72 bp TACCAGGCTGCACCACAGATCAGACTTGAGACTGCTTaGCATCACATGGCCACAGAGCAGCAGGCAGGACGA +
Preference number: 3 (lower is better)
Translates to: YQAAPQIRLETA*HHMATEQQAGR
Trigger: TCGTCCTGCCTGCTGCTCTGTGGCCATGTGATGCCAAGCAGTCTCAAGTCTGATCTGTGGTGCAGCCTGGTA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR TCA 72 bp GAGGGTTGGTTACCAGGCTGCACCACAGATCAGACTTaGGACTGCTTGGCATCACATGGCCACAGAGCAGCA +
Preference number: 3 (lower is better)
Translates to: EGWLPGCTTDQT*DCLASHGHRAA
Trigger: TGCTGCTCTGTGGCCATGTGATGCCAAGCAGTCTCAAGTCTGATCTGTGGTGCAGCCTGGTAACCAACCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR GCA 72 bp CAATACAGTGACCCACAGGGGCTGGCTACTCCAGGTTaGTCATGGGAATCAGGTCCCATCAGTTACTGTGCT +
Preference number: 3 (lower is better)
Translates to: QYSDPQGLATPG*SWESGPISYCA
Trigger: AGCACAGTAACTGATGGGACCTGATTCCCATGAGCAACCTGGAGTAGCCAGCCCCTGTGGGTCACTGTATTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR CCA 72 bp CACCACAGATCAGACTTGAGACTGCTTGGCATCACATaGCCACAGAGCAGCAGGCAGGACGAAATGCTGCAA +
Preference number: 3 (lower is better)
Translates to: HHRSDLRLLGIT*PQSSRQDEMLQ
Trigger: TTGCAGCATTTCGTCCTGCCTGCTGCTCTGTGGCCATGTGATGCCAAGCAGTCTCAAGTCTGATCTGTGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR CCA 72 bp AGTGACCCACAGGGGCTGGCTACTCCAGGTTGCTCATaGGAATCAGGTCCCATCAGTTACTGTGCTTTCATT +
Preference number: 3 (lower is better)
Translates to: SDPQGLATPGCS*ESGPISYCAFI
Trigger: AATGAAAGCACAGTAACTGATGGGACCTGATTCCCATGAGCAACCTGGAGTAGCCAGCCCCTGTGGGTCACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR TCA 72 bp AACGAGCTTAAAAGGAGTATCCCAACTGTGAGAGGATaGACTAAGACTTGCCACGTGAAAAGGCAAAGTCCG +
Preference number: 3 (lower is better)
Translates to: NELKRSIPTVRG*TKTCHVKRQSP
Trigger: CGGACTTTGCCTTTTCACGTGGCAAGTCTTAGTTCATCCTCTCACAGTTGGGATACTCCTTTTAAGCTCGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR TCA 72 bp AAAGACATTCACAGATTCAAAAGTCCTTCTGAAGGCTaGGCAACACCGTACCTTCATCTTCCGGGTGGCTTA +
Preference number: 3 (lower is better)
Translates to: KDIHRFKSPSEG*ATPYLHLPGGL
Trigger: TAAGCCACCCGGAAGATGAAGGTACGGTGTTGCTCAGCCTTCAGAAGGACTTTTGAATCTGTGAATGTCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR CCA 72 bp AAGGTGCCTTGTAGATCGCTGAGTCTTAACACCTCTTaGTGGAGGGGCAGTCCTATTAGAAAATGTAAGCAA +
Preference number: 3 (lower is better)
Translates to: KVPCRSLSLNTS*WRGSPIRKCKQ
Trigger: TTGCTTACATTTTCTAATAGGACTGCCCCTCCACCAAGAGGTGTTAAGACTCAGCGATCTACAAGGCACCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR-3UTR CAA 90 bp TCTATATACAAACATGTTTCCGAACCAGAGCGACAGACACACAAACTGTTCACAAGTGTAAGGATTCTGTaGATGCTGATCTGTGGCAGC +
Preference number: 3 (lower is better)
Translates to: SIYKHVSEPERQTHKLFTSVRIL*MLICGS
Trigger: GCTGCCACAGATCAGCATCAACAGAATCCTTACACT...TGTGAACAGTTTGTGTGTCTGTCGCTCTGGTTCGGAAACATGTTTGTATATAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR-3UTR CAA 90 bp TCTATATACAAACATGTTTCCGAACCAGAGCGACAGACACACAAACTGTTCACAAGCCCCCACAGACAATaGTGGTTTTCTTTCCATGTT +
Preference number: 3 (lower is better)
Translates to: SIYKHVSEPERQTHKLFTSPHRQ*WFSFHV
Trigger: AACATGGAAAGAAAACCACAATTGTCTGTGGGGGCT...TGTGAACAGTTTGTGTGTCTGTCGCTCTGGTTCGGAAACATGTTTGTATATAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR TCA 72 bp ATTAGAAAATGTAAGCAAGAGAGGAACATCTGTGGCTaGGCTAGGAGTAGCCTGTTCCTATCACTGAAAACA +
Preference number: 3 (lower is better)
Translates to: IRKCKQERNICG*ARSSLFLSLKT
Trigger: TGTTTTCAGTGATAGGAACAGGCTACTCCTAGCTCAGCCACAGATGTTCCTCTCTTGCTTACATTTTCTAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR CCA 72 bp GCTTATGTAAATTCTAAAGAATGGGGGATGAAACTTTaGAGGGTCGATACATCGTGTTTAGTTTATGTCAAC +
Preference number: 3 (lower is better)
Translates to: AYVNSKEWGMKL*RVDTSCLVYVN
Trigger: GTTGACATAAACTAAACACGATGTATCGACCCTCCAAAGTTTCATCCCCCATTCTTTAGAATTTACATAAGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp CTCCGCAGAGCACAGCTAGAACTCACAGTGGGAGGGGCCAAGTACAGCTCTCTAGCCCCAGCCCGCTCGTaGACCCTCCTCCTGTGCTTG +
Preference number: 4 (lower is better)
Translates to: LRRAQLELTVGGAKYSSLAPARS*TLLLCL
Trigger: CAAGCACAGGAGGAGGGTCCACGAGCGGGCTGGGGC...TAGAGAGCTGTACTTGGCCCCTCCCACTGTGAGTTCTAGCTGTGCTCTGCGGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR TCA 90 bp CTCACGGCTCCGCAGAGCACAGCTAGAACTCACAGTGGGAGGGGCCAAGTACAGCTGGTTTGGCAGCTATaGGGCGCAGCTGCCTTGCCA +
Preference number: 4 (lower is better)
Translates to: LTAPQSTARTHSGRGQVQLVWQL*GAAALP
Trigger: TGGCAAGGCAGCTGCGCCTCATAGCTGCCAAACCAG...CTGTACTTGGCCCCTCCCACTGTGAGTTCTAGCTGTGCTCTGCGGAGCCGTGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp CTCACGGCTCCGCAGAGCACAGCTAGAACTCACAGTGGGAGGGGCCAAGTACAGTTTGGAAGGCAGCCCTaGGACTGGGGCCCTTTGAGA +
Preference number: 4 (lower is better)
Translates to: LTAPQSTARTHSGRGQVQFGRQP*DWGPLR
Trigger: TCTCAAAGGGCCCCAGTCCCAGGGCTGCCTTCCAAA...CTGTACTTGGCCCCTCCCACTGTGAGTTCTAGCTGTGCTCTGCGGAGCCGTGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp CTCACGGCTCCGCAGAGCACAGCTAGAACTCACAGTGGGAGGGGCCAAGTACAGGGGACAGACCTGCTGTaGAACAAGCTGTCTGCTGCC +
Preference number: 4 (lower is better)
Translates to: LTAPQSTARTHSGRGQVQGTDLL*NKLSAA
Trigger: GGCAGCAGACAGCTTGTTCCACAGCAGGTCTGTCCC...CTGTACTTGGCCCCTCCCACTGTGAGTTCTAGCTGTGCTCTGCGGAGCCGTGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR TCA 90 bp CTCCGCAGAGCACAGCTAGAACTCACAGTGGGAGGGGCCAAGTACAGCTCTCTAGCTTGGCCACAGTTTTaGATGGCCGCTTGGCCCCAG +
Preference number: 4 (lower is better)
Translates to: LRRAQLELTVGGAKYSSLAWPQF*MAAWPQ
Trigger: CTGGGGCCAAGCGGCCATTCAAAACTGTGGCCAAGC...TAGAGAGCTGTACTTGGCCCCTCCCACTGTGAGTTCTAGCTGTGCTCTGCGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR GCA 90 bp ACGAAATGCTGCAATACAGTGACCCACAGGGGCTGGCTACTCCAGGTTGCTCATGCAAGCGGCAGGAGCTaGTGGGAGTTACTGCGGGCC +
Preference number: 4 (lower is better)
Translates to: TKCCNTVTHRGWLLQVAHASGRS*WELLRA
Trigger: GGCCCGCAGTAACTCCCAGCAGCTCCTGCCGCTTGC...ATGAGCAACCTGGAGTAGCCAGCCCCTGTGGGTCACTGTATTGCAGCATTTCGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR TCA 90 bp CTCACGGCTCCGCAGAGCACAGCTAGAACTCACAGTGGGAGGGGCCAAGTACAGTGGTACAATAGGGTCTaGGCTTCCTGTCTCTCCGTC +
Preference number: 4 (lower is better)
Translates to: LTAPQSTARTHSGRGQVQWYNRV*ASCLSV
Trigger: GACGGAGAGACAGGAAGCTCAGACCCTATTGTACCA...CTGTACTTGGCCCCTCCCACTGTGAGTTCTAGCTGTGCTCTGCGGAGCCGTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR TCA 90 bp CTCACGGCTCCGCAGAGCACAGCTAGAACTCACAGTGGGAGGGGCCAAGTACAGCTTGGGAGTTGCTTTTaGGGTCAGCTTTGGTGCCTG +
Preference number: 4 (lower is better)
Translates to: LTAPQSTARTHSGRGQVQLGSCF*GQLWCL
Trigger: CAGGCACCAAAGCTGACCTCAAAAGCAACTCCCAAG...CTGTACTTGGCCCCTCCCACTGTGAGTTCTAGCTGTGCTCTGCGGAGCCGTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR TCA 90 bp CTCACGGCTCCGCAGAGCACAGCTAGAACTCACAGTGGGAGGGGCCAAGTACAGGATGATTTAGCACAATaGCAGGCTGGTTCCGACGGG +
Preference number: 4 (lower is better)
Translates to: LTAPQSTARTHSGRGQVQDDLAQ*QAGSDG
Trigger: CCCGTCGGAACCAGCCTGTCATTGTGCTAAATCATC...CTGTACTTGGCCCCTCCCACTGTGAGTTCTAGCTGTGCTCTGCGGAGCCGTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR GCA 90 bp CTGATACACGCCCAATTAAAGCAAAGCTCACGGCTCCGCAGAGCACAGCTAGAAGCAAGCGGCAGGAGCTaGTGGGAGTTACTGCGGGCC +
Preference number: 4 (lower is better)
Translates to: LIHAQLKQSSRLRRAQLEASGRS*WELLRA
Trigger: GGCCCGCAGTAACTCCCAGCAGCTCCTGCCGCTTGC...TTCTAGCTGTGCTCTGCGGAGCCGTGAGCTTTGCTTTAATTGGGCGTGTATCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR TCA 90 bp ACTGAGTCCCCAGGTGAAGAACCAGTCACAGCAGACCCTACACAGCCTGCTTTCGGGACTGGGGCCCTTTaGGAGTTCCATGCTCTGCTT +
Preference number: 4 (lower is better)
Translates to: TESPGEEPVTADPTQPAFGTGAL*EFHALL
Trigger: AAGCAGAGCATGGAACTCTCAAAGGGCCCCAGTCCC...GAAAGCAGGCTGTGTAGGGTCTGCTGTGACTGGTTCTTCACCTGGGGACTCAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR TCA 90 bp ACTGAGTCCCCAGGTGAAGAACCAGTCACAGCAGACCCTACACAGCCTGCTTTCCTGGCCTTCCTTGCCTaGTGGAGTCACTGCTTCCTG +
Preference number: 4 (lower is better)
Translates to: TESPGEEPVTADPTQPAFLAFLA*WSHCFL
Trigger: CAGGAAGCAGTGACTCCATCAGGCAAGGAAGGCCAG...GAAAGCAGGCTGTGTAGGGTCTGCTGTGACTGGTTCTTCACCTGGGGACTCAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp CTCCGCAGAGCACAGCTAGAACTCACAGTGGGAGGGGCCAAGTACAGCTCTCTAGTTGTTTGGGGGACATaGTCAAGGAACTGGGTCCCC +
Preference number: 4 (lower is better)
Translates to: LRRAQLELTVGGAKYSSLVVWGT*SRNWVP
Trigger: GGGGACCCAGTTCCTTGACCATGTCCCCCAAACAAC...TAGAGAGCTGTACTTGGCCCCTCCCACTGTGAGTTCTAGCTGTGCTCTGCGGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp CTCACGGCTCCGCAGAGCACAGCTAGAACTCACAGTGGGAGGGGCCAAGTACAGTTCACAAAATGCAGCTaGGTAGGCACTGCTCGAAGG +
Preference number: 4 (lower is better)
Translates to: LTAPQSTARTHSGRGQVQFTKCS*VGTARR
Trigger: CCTTCGAGCAGTGCCTACCCAGCTGCATTTTGTGAA...CTGTACTTGGCCCCTCCCACTGTGAGTTCTAGCTGTGCTCTGCGGAGCCGTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp CTCACGGCTCCGCAGAGCACAGCTAGAACTCACAGTGGGAGGGGCCAAGTACAGGCTTTACTCAAGAAATaGCTCACTGTGGCCCCAGGA +
Preference number: 4 (lower is better)
Translates to: LTAPQSTARTHSGRGQVQALLKK*LTVAPG
Trigger: TCCTGGGGCCACAGTGAGCCATTTCTTGAGTAAAGC...CTGTACTTGGCCCCTCCCACTGTGAGTTCTAGCTGTGCTCTGCGGAGCCGTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR CAA 72 bp GGAGGGTTGGTTACCAGGCTGCACCACAGATCAGACTaGAGACTGCTTGGCATCACATGGCCACAGAGCAGC +
Preference number: 4 (lower is better)
Translates to: GGLVTRLHHRSD*RLLGITWPQSS
Trigger: GCTGCTCTGTGGCCATGTGATGCCAAGCAGTCTCAAGTCTGATCTGTGGTGCAGCCTGGTAACCAACCCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR TCA 90 bp CTCCGCAGAGCACAGCTAGAACTCACAGTGGGAGGGGCCAAGTACAGCTCTCTACCCTCCTCCTGTGCTTaGCGATGTAGTCATTGCGAA +
Preference number: 4 (lower is better)
Translates to: LRRAQLELTVGGAKYSSLPSSCA*RCSHCE
Trigger: TTCGCAATGACTACATCGTCAAGCACAGGAGGAGGG...TAGAGAGCTGTACTTGGCCCCTCCCACTGTGAGTTCTAGCTGTGCTCTGCGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR TCA 90 bp CTCCGCAGAGCACAGCTAGAACTCACAGTGGGAGGGGCCAAGTACAGCTCTCTACTTGGGAGTTGCTTTTaGGGTCAGCTTTGGTGCCTG +
Preference number: 4 (lower is better)
Translates to: LRRAQLELTVGGAKYSSLLGSCF*GQLWCL
Trigger: CAGGCACCAAAGCTGACCTCAAAAGCAACTCCCAAG...TAGAGAGCTGTACTTGGCCCCTCCCACTGTGAGTTCTAGCTGTGCTCTGCGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR TCA 90 bp CTCACGGCTCCGCAGAGCACAGCTAGAACTCACAGTGGGAGGGGCCAAGTACAGGAGTCAACGTCAGGATaGTTTAGCACAATGACAGGC +
Preference number: 4 (lower is better)
Translates to: LTAPQSTARTHSGRGQVQESTSG*FSTMTG
Trigger: GCCTGTCATTGTGCTAAATCATCCTGACGTTGACTC...CTGTACTTGGCCCCTCCCACTGTGAGTTCTAGCTGTGCTCTGCGGAGCCGTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR TCA 90 bp ACTGAGTCCCCAGGTGAAGAACCAGTCACAGCAGACCCTACACAGCCTGCTTTCAAATGCCTCTGGCCGTaGCTCATCCACTCTTCCTGG +
Preference number: 4 (lower is better)
Translates to: TESPGEEPVTADPTQPAFKCLWP*LIHSSW
Trigger: CCAGGAAGAGTGGATGAGTCACGGCCAGAGGCATTT...GAAAGCAGGCTGTGTAGGGTCTGCTGTGACTGGTTCTTCACCTGGGGACTCAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp GTAAAGCAAAATCAAAGTGGATGTGTGCCCCAAGACACACCCTTCAGCAGCATTGCCCCAGCCCGCTCGTaGACCCTCCTCCTGTGCTTG +
Preference number: 4 (lower is better)
Translates to: VKQNQSGCVPQDTPFSSIAPARS*TLLLCL
Trigger: CAAGCACAGGAGGAGGGTCCACGAGCGGGCTGGGGC...AATGCTGCTGAAGGGTGTGTCTTGGGGCACACATCCACTTTGATTTTGCTTTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp ACTGAGTCCCCAGGTGAAGAACCAGTCACAGCAGACCCTACACAGCCTGCTTTCGGATGCTGGTTCTCTTaGGTTCCAGCTTGGCCACAG +
Preference number: 4 (lower is better)
Translates to: TESPGEEPVTADPTQPAFGCWFS*VPAWPQ
Trigger: CTGTGGCCAAGCTGGAACCCAAGAGAACCAGCATCC...GAAAGCAGGCTGTGTAGGGTCTGCTGTGACTGGTTCTTCACCTGGGGACTCAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp ATGATCCTATGCTCAAGTGTGTGCTGGCACACTCTCAGGCTTTGCACTGAGTCCACAGGCTCACCTCCCTaGGCTCGGACAGGGTCACTT +
Preference number: 4 (lower is better)
Translates to: MILCSSVCWHTLRLCTESTGSPP*ARTGSL
Trigger: AAGTGACCCTGTCCGAGCCCAGGGAGGTGAGCCTGT...GGACTCAGTGCAAAGCCTGAGAGTGTGCCAGCACACACTTGAGCATAGGATCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp ACGAAATGCTGCAATACAGTGACCCACAGGGGCTGGCTACTCCAGGTTGCTCATGGGACAGACCTGCTGTaGAACAAGCTGTCTGCTGCC +
Preference number: 4 (lower is better)
Translates to: TKCCNTVTHRGWLLQVAHGTDLL*NKLSAA
Trigger: GGCAGCAGACAGCTTGTTCCACAGCAGGTCTGTCCC...ATGAGCAACCTGGAGTAGCCAGCCCCTGTGGGTCACTGTATTGCAGCATTTCGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp CTCACGGCTCCGCAGAGCACAGCTAGAACTCACAGTGGGAGGGGCCAAGTACAGAATAACGGCCGGGATTaGCCTGCATCTTGTTCTTCT +
Preference number: 4 (lower is better)
Translates to: LTAPQSTARTHSGRGQVQNNGRD*PASCSS
Trigger: AGAAGAACAAGATGCAGGCCAATCCCGGCCGTTATT...CTGTACTTGGCCCCTCCCACTGTGAGTTCTAGCTGTGCTCTGCGGAGCCGTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR TCA 90 bp ACTGAGTCCCCAGGTGAAGAACCAGTCACAGCAGACCCTACACAGCCTGCTTTCGATGATTTAGCACAATaGCAGGCTGGTTCCGACGGG +
Preference number: 4 (lower is better)
Translates to: TESPGEEPVTADPTQPAFDDLAQ*QAGSDG
Trigger: CCCGTCGGAACCAGCCTGTCATTGTGCTAAATCATC...GAAAGCAGGCTGTGTAGGGTCTGCTGTGACTGGTTCTTCACCTGGGGACTCAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR GCA 90 bp CTCACGGCTCCGCAGAGCACAGCTAGAACTCACAGTGGGAGGGGCCAAGTACAGTTGTTGTTCACAAAATaGAGCTGGGTAGGCACTGCT +
Preference number: 4 (lower is better)
Translates to: LTAPQSTARTHSGRGQVQLLFTK*SWVGTA
Trigger: AGCAGTGCCTACCCAGCTGCATTTTGTGAACAACAA...CTGTACTTGGCCCCTCCCACTGTGAGTTCTAGCTGTGCTCTGCGGAGCCGTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp ACTGAGTCCCCAGGTGAAGAACCAGTCACAGCAGACCCTACACAGCCTGCTTTCTCCGACAACTTGTTTTaGAAGGCAGCCCTGGGACTG +
Preference number: 4 (lower is better)
Translates to: TESPGEEPVTADPTQPAFSDNLF*KAALGL
Trigger: CAGTCCCAGGGCTGCCTTCCAAAACAAGTTGTCGGA...GAAAGCAGGCTGTGTAGGGTCTGCTGTGACTGGTTCTTCACCTGGGGACTCAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp ACGAAATGCTGCAATACAGTGACCCACAGGGGCTGGCTACTCCAGGTTGCTCATTTCACGTCCATCAACTaGGCCAGACAGTTGGTGGGG +
Preference number: 4 (lower is better)
Translates to: TKCCNTVTHRGWLLQVAHFTSIN*ARQLVG
Trigger: CCCCACCAACTGTCTGGCCCAGTTGATGGACGTGAA...ATGAGCAACCTGGAGTAGCCAGCCCCTGTGGGTCACTGTATTGCAGCATTTCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR TCA 90 bp CTCACGGCTCCGCAGAGCACAGCTAGAACTCACAGTGGGAGGGGCCAAGTACAGGGACATTTAATCAACTaGTCTGGTTTGGCAGCTATG +
Preference number: 4 (lower is better)
Translates to: LTAPQSTARTHSGRGQVQGHLIN*SGLAAM
Trigger: CATAGCTGCCAAACCAGATCAGTTGATTAAATGTCC...CTGTACTTGGCCCCTCCCACTGTGAGTTCTAGCTGTGCTCTGCGGAGCCGTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR GCA 90 bp CTCCGCAGAGCACAGCTAGAACTCACAGTGGGAGGGGCCAAGTACAGCTCTCTATCTCTCCGTCCGAGTTaGTCTATTAGGTTGTTTGGG +
Preference number: 4 (lower is better)
Translates to: LRRAQLELTVGGAKYSSLSLRPS*SIRLFG
Trigger: CCCAAACAACCTAATAGAGCAACTCGGACGGAGAGA...TAGAGAGCTGTACTTGGCCCCTCCCACTGTGAGTTCTAGCTGTGCTCTGCGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR GCA 90 bp ACTGAGTCCCCAGGTGAAGAACCAGTCACAGCAGACCCTACACAGCCTGCTTTCTGCTCTGCTTTGGGATaGTGGTTCTCTTGGGTTCCA +
Preference number: 4 (lower is better)
Translates to: TESPGEEPVTADPTQPAFCSALG*WFSWVP
Trigger: TGGAACCCAAGAGAACCAGCATCCCAAAGCAGAGCA...GAAAGCAGGCTGTGTAGGGTCTGCTGTGACTGGTTCTTCACCTGGGGACTCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp ACTGAGTCCCCAGGTGAAGAACCAGTCACAGCAGACCCTACACAGCCTGCTTTCTCGTTTGGAGGTTTTTaGAGAGGACCCACAGAAGGG +
Preference number: 4 (lower is better)
Translates to: TESPGEEPVTADPTQPAFSFGGF*RGPTEG
Trigger: CCCTTCTGTGGGTCCTCTCCAAAAACCTCCAAACGA...GAAAGCAGGCTGTGTAGGGTCTGCTGTGACTGGTTCTTCACCTGGGGACTCAGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp CTCACGGCTCCGCAGAGCACAGCTAGAACTCACAGTGGGAGGGGCCAAGTACAGTTTAATCAACTGATCTaGTTTGGCAGCTATGAGGCG +
Preference number: 4 (lower is better)
Translates to: LTAPQSTARTHSGRGQVQFNQLI*FGSYEA
Trigger: CGCCTCATAGCTGCCAAACCAGATCAGTTGATTAAA...CTGTACTTGGCCCCTCCCACTGTGAGTTCTAGCTGTGCTCTGCGGAGCCGTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR TCA 90 bp CTGATACACGCCCAATTAAAGCAAAGCTCACGGCTCCGCAGAGCACAGCTAGAATGGTACAATAGGGTCTaGGCTTCCTGTCTCTCCGTC +
Preference number: 4 (lower is better)
Translates to: LIHAQLKQSSRLRRAQLEWYNRV*ASCLSV
Trigger: GACGGAGAGACAGGAAGCTCAGACCCTATTGTACCA...TTCTAGCTGTGCTCTGCGGAGCCGTGAGCTTTGCTTTAATTGGGCGTGTATCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR TCA 90 bp ACTGAGTCCCCAGGTGAAGAACCAGTCACAGCAGACCCTACACAGCCTGCTTTCTTAAGCACAAGCTGCTaGGCACCATTGACAACCTTC +
Preference number: 4 (lower is better)
Translates to: TESPGEEPVTADPTQPAFLSTSC*APLTTF
Trigger: GAAGGTTGTCAATGGTGCTCAGCAGCTTGTGCTTAA...GAAAGCAGGCTGTGTAGGGTCTGCTGTGACTGGTTCTTCACCTGGGGACTCAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR TCA 90 bp CTCACGGCTCCGCAGAGCACAGCTAGAACTCACAGTGGGAGGGGCCAAGTACAGTTTTTAAGCTGTTTCTaGACCAAAGAGTGCAGACGA +
Preference number: 4 (lower is better)
Translates to: LTAPQSTARTHSGRGQVQFLSCF*TKECRR
Trigger: TCGTCTGCACTCTTTGGTTCAGAAACAGCTTAAAAA...CTGTACTTGGCCCCTCCCACTGTGAGTTCTAGCTGTGCTCTGCGGAGCCGTGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR TCA 90 bp ACGAAATGCTGCAATACAGTGACCCACAGGGGCTGGCTACTCCAGGTTGCTCATCCTATGGAACGTCGCTaGGCACTATTGGCAGACAAA +
Preference number: 4 (lower is better)
Translates to: TKCCNTVTHRGWLLQVAHPMERR*ALLADK
Trigger: TTTGTCTGCCAATAGTGCTCAGCGACGTTCCATAGG...ATGAGCAACCTGGAGTAGCCAGCCCCTGTGGGTCACTGTATTGCAGCATTTCGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR GCA 90 bp ACTGAGTCCCCAGGTGAAGAACCAGTCACAGCAGACCCTACACAGCCTGCTTTCTTCAAACGTGGCACCTaGTGTTTCAGAAGTCTTGGG +
Preference number: 4 (lower is better)
Translates to: TESPGEEPVTADPTQPAFFKRGT*CFRSLG
Trigger: CCCAAGACTTCTGAAACAGCAGGTGCCACGTTTGAA...GAAAGCAGGCTGTGTAGGGTCTGCTGTGACTGGTTCTTCACCTGGGGACTCAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR GCA 90 bp ATGATCCTATGCTCAAGTGTGTGCTGGCACACTCTCAGGCTTTGCACTGAGTCCTGCTTCCTGGTGCCGTaGTGTACACAGGGACCATTT +
Preference number: 4 (lower is better)
Translates to: MILCSSVCWHTLRLCTESCFLVP*CTQGPF
Trigger: AAATGGTCCCTGTGTACAGCACGGCACCAGGAAGCA...GGACTCAGTGCAAAGCCTGAGAGTGTGCCAGCACACACTTGAGCATAGGATCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR GCA 90 bp CTGATACACGCCCAATTAAAGCAAAGCTCACGGCTCCGCAGAGCACAGCTAGAATGCTTCCTGGTGCCGTaGTGTACACAGGGACCATTT +
Preference number: 4 (lower is better)
Translates to: LIHAQLKQSSRLRRAQLECFLVP*CTQGPF
Trigger: AAATGGTCCCTGTGTACAGCACGGCACCAGGAAGCA...TTCTAGCTGTGCTCTGCGGAGCCGTGAGCTTTGCTTTAATTGGGCGTGTATCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp ACGAAATGCTGCAATACAGTGACCCACAGGGGCTGGCTACTCCAGGTTGCTCATACATGGTCAAGGAACTaGGTCCCCCATTCACTTGTG +
Preference number: 4 (lower is better)
Translates to: TKCCNTVTHRGWLLQVAHTWSRN*VPHSLV
Trigger: CACAAGTGAATGGGGGACCCAGTTCCTTGACCATGT...ATGAGCAACCTGGAGTAGCCAGCCCCTGTGGGTCACTGTATTGCAGCATTTCGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp ACGAAATGCTGCAATACAGTGACCCACAGGGGCTGGCTACTCCAGGTTGCTCATTCGTTTGGAGGTTTTTaGAGAGGACCCACAGAAGGG +
Preference number: 4 (lower is better)
Translates to: TKCCNTVTHRGWLLQVAHSFGGF*RGPTEG
Trigger: CCCTTCTGTGGGTCCTCTCCAAAAACCTCCAAACGA...ATGAGCAACCTGGAGTAGCCAGCCCCTGTGGGTCACTGTATTGCAGCATTTCGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp ACGAAATGCTGCAATACAGTGACCCACAGGGGCTGGCTACTCCAGGTTGCTCATCATCCCAGTCTCTGGTaGCCTCTATCAAATGCCTCT +
Preference number: 4 (lower is better)
Translates to: TKCCNTVTHRGWLLQVAHHPSLW*PLSNAS
Trigger: AGAGGCATTTGATAGAGGCCACCAGAGACTGGGATG...ATGAGCAACCTGGAGTAGCCAGCCCCTGTGGGTCACTGTATTGCAGCATTTCGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp CTGATACACGCCCAATTAAAGCAAAGCTCACGGCTCCGCAGAGCACAGCTAGAAGGACATCCCAGTCTCTaGTGGCCTCTATCAAATGCC +
Preference number: 4 (lower is better)
Translates to: LIHAQLKQSSRLRRAQLEGHPSL*WPLSNA
Trigger: GGCATTTGATAGAGGCCACCAGAGACTGGGATGTCC...TTCTAGCTGTGCTCTGCGGAGCCGTGAGCTTTGCTTTAATTGGGCGTGTATCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR TCA 90 bp GCAGAGTGTAAGGATTCTGTTGATGCTGATCTGTGGCAGCTCTTGGTCGAGTCGCCTATGGAACGTCGCTaGGCACTATTGGCAGACAAA +
Preference number: 4 (lower is better)
Translates to: AECKDSVDADLWQLLVESPMERR*ALLADK
Trigger: TTTGTCTGCCAATAGTGCTCAGCGACGTTCCATAGG...CGACTCGACCAAGAGCTGCCACAGATCAGCATCAACAGAATCCTTACACTCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR GCA 90 bp ACGAAATGCTGCAATACAGTGACCCACAGGGGCTGGCTACTCCAGGTTGCTCATTCTCTCCGTCCGAGTTaGTCTATTAGGTTGTTTGGG +
Preference number: 4 (lower is better)
Translates to: TKCCNTVTHRGWLLQVAHSLRPS*SIRLFG
Trigger: CCCAAACAACCTAATAGAGCAACTCGGACGGAGAGA...ATGAGCAACCTGGAGTAGCCAGCCCCTGTGGGTCACTGTATTGCAGCATTTCGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp GCAGAGTGTAAGGATTCTGTTGATGCTGATCTGTGGCAGCTCTTGGTCGAGTCGTTCACAAAATGCAGCTaGGTAGGCACTGCTCGAAGG +
Preference number: 4 (lower is better)
Translates to: AECKDSVDADLWQLLVESFTKCS*VGTARR
Trigger: CCTTCGAGCAGTGCCTACCCAGCTGCATTTTGTGAA...CGACTCGACCAAGAGCTGCCACAGATCAGCATCAACAGAATCCTTACACTCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp GCAGAGTGTAAGGATTCTGTTGATGCTGATCTGTGGCAGCTCTTGGTCGAGTCGCTTTCGGTACTGCAGTaGGTCCTTTGTAGAGAAGCG +
Preference number: 4 (lower is better)
Translates to: AECKDSVDADLWQLLVESLSVLQ*VLCREA
Trigger: CGCTTCTCTACAAAGGACCCACTGCAGTACCGAAAG...CGACTCGACCAAGAGCTGCCACAGATCAGCATCAACAGAATCCTTACACTCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp AAAATCAAAGTGGATGTGTGCCCCAAGACACACCCTTCAGCAGCATTTATCCACTTTGGAAGGCAGCCCTaGGACTGGGGCCCTTTGAGA +
Preference number: 4 (lower is better)
Translates to: KIKVDVCPKTHPSAAFIHFGRQP*DWGPLR
Trigger: TCTCAAAGGGCCCCAGTCCCAGGGCTGCCTTCCAAA...GTGGATAAATGCTGCTGAAGGGTGTGTCTTGGGGCACACATCCACTTTGATTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp ACGAAATGCTGCAATACAGTGACCCACAGGGGCTGGCTACTCCAGGTTGCTCATAATAACGGCCGGGATTaGCCTGCATCTTGTTCTTCT +
Preference number: 4 (lower is better)
Translates to: TKCCNTVTHRGWLLQVAHNNGRD*PASCSS
Trigger: AGAAGAACAAGATGCAGGCCAATCCCGGCCGTTATT...ATGAGCAACCTGGAGTAGCCAGCCCCTGTGGGTCACTGTATTGCAGCATTTCGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp ACTGAGTCCCCAGGTGAAGAACCAGTCACAGCAGACCCTACACAGCCTGCTTTCTTACCTTCATCACATTaGTCACTTCGGGGGAGTCAA +
Preference number: 4 (lower is better)
Translates to: TESPGEEPVTADPTQPAFLPSSH*SLRGSQ
Trigger: TTGACTCCCCCGAAGTGACCAATGTGATGAAGGTAA...GAAAGCAGGCTGTGTAGGGTCTGCTGTGACTGGTTCTTCACCTGGGGACTCAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp CTCCGCAGAGCACAGCTAGAACTCACAGTGGGAGGGGCCAAGTACAGCTCTCTAATCTGCCTCTTCATGTaGTTAGTTTCTGCCACATTC +
Preference number: 4 (lower is better)
Translates to: LRRAQLELTVGGAKYSSLICLFM*LVSATF
Trigger: GAATGTGGCAGAAACTAACCACATGAAGAGGCAGAT...TAGAGAGCTGTACTTGGCCCCTCCCACTGTGAGTTCTAGCTGTGCTCTGCGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp GCAGAGTGTAAGGATTCTGTTGATGCTGATCTGTGGCAGCTCTTGGTCGAGTCGCATCCCAGTCTCTGGTaGCCTCTATCAAATGCCTCT +
Preference number: 4 (lower is better)
Translates to: AECKDSVDADLWQLLVESHPSLW*PLSNAS
Trigger: AGAGGCATTTGATAGAGGCCACCAGAGACTGGGATG...CGACTCGACCAAGAGCTGCCACAGATCAGCATCAACAGAATCCTTACACTCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
3UTR CAA 72 bp AAACAGCAGCTGTTGCAGCAGAGTGTAAGGATTCTGTaGATGCTGATCTGTGGCAGCTCTTGGTCGAGTCGG +
Preference number: 4 (lower is better)
Translates to: KQQLLQQSVRIL*MLICGSSWSSR
Trigger: CCGACTCGACCAAGAGCTGCCACAGATCAGCATCAACAGAATCCTTACACTCTGCTGCAACAGCTGCTGTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR TCA 90 bp ACGAAATGCTGCAATACAGTGACCCACAGGGGCTGGCTACTCCAGGTTGCTCATGACACACTCATTTCTTaGATAGCCTTGGGAGTTGCT +
Preference number: 4 (lower is better)
Translates to: TKCCNTVTHRGWLLQVAHDTLIS*IALGVA
Trigger: AGCAACTCCCAAGGCTATTCAAGAAATGAGTGTGTC...ATGAGCAACCTGGAGTAGCCAGCCCCTGTGGGTCACTGTATTGCAGCATTTCGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR TCA 90 bp CTGATACACGCCCAATTAAAGCAAAGCTCACGGCTCCGCAGAGCACAGCTAGAAGAGTCAACGTCAGGATaGTTTAGCACAATGACAGGC +
Preference number: 4 (lower is better)
Translates to: LIHAQLKQSSRLRRAQLEESTSG*FSTMTG
Trigger: GCCTGTCATTGTGCTAAATCATCCTGACGTTGACTC...TTCTAGCTGTGCTCTGCGGAGCCGTGAGCTTTGCTTTAATTGGGCGTGTATCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR TCA 90 bp GCAGAGTGTAAGGATTCTGTTGATGCTGATCTGTGGCAGCTCTTGGTCGAGTCGCAGACAGGACAACCTTaGGGACATTGCCTTTGTACT +
Preference number: 4 (lower is better)
Translates to: AECKDSVDADLWQLLVESQTGQP*GHCLCT
Trigger: AGTACAAAGGCAATGTCCTCAAGGTTGTCCTGTCTG...CGACTCGACCAAGAGCTGCCACAGATCAGCATCAACAGAATCCTTACACTCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR TCA 90 bp GTAAAGCAAAATCAAAGTGGATGTGTGCCCCAAGACACACCCTTCAGCAGCATTAAATGCCTCTGGCCGTaGCTCATCCACTCTTCCTGG +
Preference number: 4 (lower is better)
Translates to: VKQNQSGCVPQDTPFSSIKCLWP*LIHSSW
Trigger: CCAGGAAGAGTGGATGAGTCACGGCCAGAGGCATTT...AATGCTGCTGAAGGGTGTGTCTTGGGGCACACATCCACTTTGATTTTGCTTTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR GCA 90 bp CTCCGCAGAGCACAGCTAGAACTCACAGTGGGAGGGGCCAAGTACAGCTCTCTAAGCAAAAGCAACAGCTaGTTTACTCAAGAAATGGCT +
Preference number: 4 (lower is better)
Translates to: LRRAQLELTVGGAKYSSLSKSNS*FTQEMA
Trigger: AGCCATTTCTTGAGTAAAGCAGCTGTTGCTTTTGCT...TAGAGAGCTGTACTTGGCCCCTCCCACTGTGAGTTCTAGCTGTGCTCTGCGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR GCA 90 bp ACGAAATGCTGCAATACAGTGACCCACAGGGGCTGGCTACTCCAGGTTGCTCATCATGTGGTTAGTTTCTaGCACATTCTGGTAGGTCAG +
Preference number: 4 (lower is better)
Translates to: TKCCNTVTHRGWLLQVAHHVVSF*HILVGQ
Trigger: CTGACCTACCAGAATGTGGCAGAAACTAACCACATG...ATGAGCAACCTGGAGTAGCCAGCCCCTGTGGGTCACTGTATTGCAGCATTTCGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp ACTGAGTCCCCAGGTGAAGAACCAGTCACAGCAGACCCTACACAGCCTGCTTTCTCCTCAAGTCTTGAGTaGGGATCTTGTGAACACTTT +
Preference number: 4 (lower is better)
Translates to: TESPGEEPVTADPTQPAFSSSLE*GSCEHF
Trigger: AAAGTGTTCACAAGATCCCCACTCAAGACTTGAGGA...GAAAGCAGGCTGTGTAGGGTCTGCTGTGACTGGTTCTTCACCTGGGGACTCAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp GTAAAGCAAAATCAAAGTGGATGTGTGCCCCAAGACACACCCTTCAGCAGCATTCTGTTTCAGAAGTCTTaGGCTGCCCAGGCTGATCCC +
Preference number: 4 (lower is better)
Translates to: VKQNQSGCVPQDTPFSSILFQKS*AAQADP
Trigger: GGGATCAGCCTGGGCAGCCCAAGACTTCTGAAACAG...AATGCTGCTGAAGGGTGTGTCTTGGGGCACACATCCACTTTGATTTTGCTTTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp AAAATCAAAGTGGATGTGTGCCCCAAGACACACCCTTCAGCAGCATTTATCCACCTGTTTCAGAAGTCTTaGGCTGCCCAGGCTGATCCC +
Preference number: 4 (lower is better)
Translates to: KIKVDVCPKTHPSAAFIHLFQKS*AAQADP
Trigger: GGGATCAGCCTGGGCAGCCCAAGACTTCTGAAACAG...GTGGATAAATGCTGCTGAAGGGTGTGTCTTGGGGCACACATCCACTTTGATTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp CTCCGCAGAGCACAGCTAGAACTCACAGTGGGAGGGGCCAAGTACAGCTCTCTATCTTGTTCTTCTTCTTaGTTGAGTTCACTTGCTTGG +
Preference number: 4 (lower is better)
Translates to: LRRAQLELTVGGAKYSSLSCSSS*LSSLAW
Trigger: CCAAGCAAGTGAACTCAACCAAGAAGAAGAACAAGA...TAGAGAGCTGTACTTGGCCCCTCCCACTGTGAGTTCTAGCTGTGCTCTGCGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR TCA 90 bp ATGATCCTATGCTCAAGTGTGTGCTGGCACACTCTCAGGCTTTGCACTGAGTCCCAAGATTCAATCAACTaGGCTATCTTTCTGCGCAGC +
Preference number: 4 (lower is better)
Translates to: MILCSSVCWHTLRLCTESQDSIN*AIFLRS
Trigger: GCTGCGCAGAAAGATAGCTCAGTTGATTGAATCTTG...GGACTCAGTGCAAAGCCTGAGAGTGTGCCAGCACACACTTGAGCATAGGATCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR TCA 90 bp GCAGAGTGTAAGGATTCTGTTGATGCTGATCTGTGGCAGCTCTTGGTCGAGTCGGACACACTCATTTCTTaGATAGCCTTGGGAGTTGCT +
Preference number: 4 (lower is better)
Translates to: AECKDSVDADLWQLLVESDTLIS*IALGVA
Trigger: AGCAACTCCCAAGGCTATTCAAGAAATGAGTGTGTC...CGACTCGACCAAGAGCTGCCACAGATCAGCATCAACAGAATCCTTACACTCTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR TCA 90 bp ACTGAGTCCCCAGGTGAAGAACCAGTCACAGCAGACCCTACACAGCCTGCTTTCGTTCTTCTTCTTGGTTaGGTTCACTTGCTTGGTTTT +
Preference number: 4 (lower is better)
Translates to: TESPGEEPVTADPTQPAFVLLLG*VHLLGF
Trigger: AAAACCAAGCAAGTGAACTCAACCAAGAAGAAGAAC...GAAAGCAGGCTGTGTAGGGTCTGCTGTGACTGGTTCTTCACCTGGGGACTCAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR GCA 90 bp CTGATACACGCCCAATTAAAGCAAAGCTCACGGCTCCGCAGAGCACAGCTAGAAACTGAGCTATCTTTCTaGGCAGCAGTTCAATGGACT +
Preference number: 4 (lower is better)
Translates to: LIHAQLKQSSRLRRAQLETELSF*AAVQWT
Trigger: AGTCCATTGAACTGCTGCGCAGAAAGATAGCTCAGT...TTCTAGCTGTGCTCTGCGGAGCCGTGAGCTTTGCTTTAATTGGGCGTGTATCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp ACTGAGTCCCCAGGTGAAGAACCAGTCACAGCAGACCCTACACAGCCTGCTTTCCACACTACATCTTTTTaGTACTTCTTTAGCTCGGGT +
Preference number: 4 (lower is better)
Translates to: TESPGEEPVTADPTQPAFHTTSF*YFFSSG
Trigger: ACCCGAGCTAAAGAAGTACCAAAAAGATGTAGTGTG...GAAAGCAGGCTGTGTAGGGTCTGCTGTGACTGGTTCTTCACCTGGGGACTCAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp TCAGATCCCACTGAAAACCTGTGGAGAACATTACATCCTTTCAATCAAAACCAGACAGGCTCACCTCCCTaGGCTCGGACAGGGTCACTT +
Preference number: 4 (lower is better)
Translates to: SDPTENLWRTLHPFNQNQTGSPP*ARTGSL
Trigger: AAGTGACCCTGTCCGAGCCCAGGGAGGTGAGCCTGT...CTGGTTTTGATTGAAAGGATGTAATGTTCTCCACAGGTTTTCAGTGGGATCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp ACTGAGTCCCCAGGTGAAGAACCAGTCACAGCAGACCCTACACAGCCTGCTTTCCAACAGGAGTCTTTCTaGTCACTCTGTTTTCCATTT +
Preference number: 4 (lower is better)
Translates to: TESPGEEPVTADPTQPAFQQESF*SLCFPF
Trigger: AAATGGAAAACAGAGTGACCAGAAAGACTCCTGTTG...GAAAGCAGGCTGTGTAGGGTCTGCTGTGACTGGTTCTTCACCTGGGGACTCAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp AAAATCAAAGTGGATGTGTGCCCCAAGACACACCCTTCAGCAGCATTTATCCACGGACATCCCAGTCTCTaGTGGCCTCTATCAAATGCC +
Preference number: 4 (lower is better)
Translates to: KIKVDVCPKTHPSAAFIHGHPSL*WPLSNA
Trigger: GGCATTTGATAGAGGCCACCAGAGACTGGGATGTCC...GTGGATAAATGCTGCTGAAGGGTGTGTCTTGGGGCACACATCCACTTTGATTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR TCA 90 bp TCTATATACAAACATGTTTCCGAACCAGAGCGACAGACACACAAACTGTTCACAGGGACTGGGGCCCTTTaGGAGTTCCATGCTCTGCTT +
Preference number: 4 (lower is better)
Translates to: SIYKHVSEPERQTHKLFTGTGAL*EFHALL
Trigger: AAGCAGAGCATGGAACTCTCAAAGGGCCCCAGTCCC...TGTGAACAGTTTGTGTGTCTGTCGCTCTGGTTCGGAAACATGTTTGTATATAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR TCA 90 bp ACGAAATGCTGCAATACAGTGACCCACAGGGGCTGGCTACTCCAGGTTGCTCATCACCAGAATTCGGCATaGAAAAATTGCAAGACTTCA +
Preference number: 4 (lower is better)
Translates to: TKCCNTVTHRGWLLQVAHHQNSA*KNCKTS
Trigger: TGAAGTCTTGCAATTTTTTCATGCCGAATTCTGGTG...ATGAGCAACCTGGAGTAGCCAGCCCCTGTGGGTCACTGTATTGCAGCATTTCGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR TCA 90 bp GCAGAGTGTAAGGATTCTGTTGATGCTGATCTGTGGCAGCTCTTGGTCGAGTCGAGGAAAGATTCTTGTTaGCTGTGGACACCAGAATTC +
Preference number: 4 (lower is better)
Translates to: AECKDSVDADLWQLLVESRKDSC*LWTPEF
Trigger: GAATTCTGGTGTCCACAGTCAACAAGAATCTTTCCT...CGACTCGACCAAGAGCTGCCACAGATCAGCATCAACAGAATCCTTACACTCTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR TCA 90 bp CTGATACACGCCCAATTAAAGCAAAGCTCACGGCTCCGCAGAGCACAGCTAGAAAGGAAAGATTCTTGTTaGCTGTGGACACCAGAATTC +
Preference number: 4 (lower is better)
Translates to: LIHAQLKQSSRLRRAQLERKDSC*LWTPEF
Trigger: GAATTCTGGTGTCCACAGTCAACAAGAATCTTTCCT...TTCTAGCTGTGCTCTGCGGAGCCGTGAGCTTTGCTTTAATTGGGCGTGTATCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR TCA 90 bp TCTATATACAAACATGTTTCCGAACCAGAGCGACAGACACACAAACTGTTCACACTGGCCTTCCTTGCCTaGTGGAGTCACTGCTTCCTG +
Preference number: 4 (lower is better)
Translates to: SIYKHVSEPERQTHKLFTLAFLA*WSHCFL
Trigger: CAGGAAGCAGTGACTCCATCAGGCAAGGAAGGCCAG...TGTGAACAGTTTGTGTGTCTGTCGCTCTGGTTCGGAAACATGTTTGTATATAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR TCA 90 bp ACGAAATGCTGCAATACAGTGACCCACAGGGGCTGGCTACTCCAGGTTGCTCATGTTCTTCTTCTTGGTTaGGTTCACTTGCTTGGTTTT +
Preference number: 4 (lower is better)
Translates to: TKCCNTVTHRGWLLQVAHVLLLG*VHLLGF
Trigger: AAAACCAAGCAAGTGAACTCAACCAAGAAGAAGAAC...ATGAGCAACCTGGAGTAGCCAGCCCCTGTGGGTCACTGTATTGCAGCATTTCGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR TCA 90 bp ATGATCCTATGCTCAAGTGTGTGCTGGCACACTCTCAGGCTTTGCACTGAGTCCGGACATTTAATCAACTaGTCTGGTTTGGCAGCTATG +
Preference number: 4 (lower is better)
Translates to: MILCSSVCWHTLRLCTESGHLIN*SGLAAM
Trigger: CATAGCTGCCAAACCAGATCAGTTGATTAAATGTCC...GGACTCAGTGCAAAGCCTGAGAGTGTGCCAGCACACACTTGAGCATAGGATCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR GCA 90 bp AAAATCAAAGTGGATGTGTGCCCCAAGACACACCCTTCAGCAGCATTTATCCACGTGTGCTTTCGGTACTaGAGTGGGTCCTTTGTAGAG +
Preference number: 4 (lower is better)
Translates to: KIKVDVCPKTHPSAAFIHVCFRY*SGSFVE
Trigger: CTCTACAAAGGACCCACTGCAGTACCGAAAGCACAC...GTGGATAAATGCTGCTGAAGGGTGTGTCTTGGGGCACACATCCACTTTGATTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR GCA 90 bp GCAGAGTGTAAGGATTCTGTTGATGCTGATCTGTGGCAGCTCTTGGTCGAGTCGTATTTCCCACTGCCTTaGTTTCCATCTGCTTGTCTT +
Preference number: 4 (lower is better)
Translates to: AECKDSVDADLWQLLVESYFPLP*FPSACL
Trigger: AAGACAAGCAGATGGAAAGCAAGGCAGTGGGAAATA...CGACTCGACCAAGAGCTGCCACAGATCAGCATCAACAGAATCCTTACACTCTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR GCA 90 bp CTGATACACGCCCAATTAAAGCAAAGCTCACGGCTCCGCAGAGCACAGCTAGAAAAATACTCTTTATTCTaGACAGAGGAAACCTGGCCC +
Preference number: 4 (lower is better)
Translates to: LIHAQLKQSSRLRRAQLEKYSLF*TEETWP
Trigger: GGGCCAGGTTTCCTCTGTGCAGAATAAAGAGTATTT...TTCTAGCTGTGCTCTGCGGAGCCGTGAGCTTTGCTTTAATTGGGCGTGTATCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp ACGAAATGCTGCAATACAGTGACCCACAGGGGCTGGCTACTCCAGGTTGCTCATCACACTACATCTTTTTaGTACTTCTTTAGCTCGGGT +
Preference number: 4 (lower is better)
Translates to: TKCCNTVTHRGWLLQVAHHTTSF*YFFSSG
Trigger: ACCCGAGCTAAAGAAGTACCAAAAAGATGTAGTGTG...ATGAGCAACCTGGAGTAGCCAGCCCCTGTGGGTCACTGTATTGCAGCATTTCGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp CTGATACACGCCCAATTAAAGCAAAGCTCACGGCTCCGCAGAGCACAGCTAGAATTTAATCAACTGATCTaGTTTGGCAGCTATGAGGCG +
Preference number: 4 (lower is better)
Translates to: LIHAQLKQSSRLRRAQLEFNQLI*FGSYEA
Trigger: CGCCTCATAGCTGCCAAACCAGATCAGTTGATTAAA...TTCTAGCTGTGCTCTGCGGAGCCGTGAGCTTTGCTTTAATTGGGCGTGTATCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp GTAAAGCAAAATCAAAGTGGATGTGTGCCCCAAGACACACCCTTCAGCAGCATTAGCACAATGACAGGCTaGTTCCGACGGGGACATTTA +
Preference number: 4 (lower is better)
Translates to: VKQNQSGCVPQDTPFSSISTMTG*FRRGHL
Trigger: TAAATGTCCCCGTCGGAACCAGCCTGTCATTGTGCT...AATGCTGCTGAAGGGTGTGTCTTGGGGCACACATCCACTTTGATTTTGCTTTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR TCA 90 bp ATGATCCTATGCTCAAGTGTGTGCTGGCACACTCTCAGGCTTTGCACTGAGTCCTGCCTTTGTACTTGTTaGTTACCTTCATCACATTGG +
Preference number: 4 (lower is better)
Translates to: MILCSSVCWHTLRLCTESCLCTC*LPSSHW
Trigger: CCAATGTGATGAAGGTAATCAACAAGTACAAAGGCA...GGACTCAGTGCAAAGCCTGAGAGTGTGCCAGCACACACTTGAGCATAGGATCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR GCA 90 bp GTAAAGCAAAATCAAAGTGGATGTGTGCCCCAAGACACACCCTTCAGCAGCATTTTCAAACGTGGCACCTaGTGTTTCAGAAGTCTTGGG +
Preference number: 4 (lower is better)
Translates to: VKQNQSGCVPQDTPFSSIFKRGT*CFRSLG
Trigger: CCCAAGACTTCTGAAACAGCAGGTGCCACGTTTGAA...AATGCTGCTGAAGGGTGTGTCTTGGGGCACACATCCACTTTGATTTTGCTTTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp TCTATATACAAACATGTTTCCGAACCAGAGCGACAGACACACAAACTGTTCACAGTTGTTTGGGGGACATaGTCAAGGAACTGGGTCCCC +
Preference number: 4 (lower is better)
Translates to: SIYKHVSEPERQTHKLFTVVWGT*SRNWVP
Trigger: GGGGACCCAGTTCCTTGACCATGTCCCCCAAACAAC...TGTGAACAGTTTGTGTGTCTGTCGCTCTGGTTCGGAAACATGTTTGTATATAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp TCTATATACAAACATGTTTCCGAACCAGAGCGACAGACACACAAACTGTTCACAGGATGCTGGTTCTCTTaGGTTCCAGCTTGGCCACAG +
Preference number: 4 (lower is better)
Translates to: SIYKHVSEPERQTHKLFTGCWFS*VPAWPQ
Trigger: CTGTGGCCAAGCTGGAACCCAAGAGAACCAGCATCC...TGTGAACAGTTTGTGTGTCTGTCGCTCTGGTTCGGAAACATGTTTGTATATAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp TCAGATCCCACTGAAAACCTGTGGAGAACATTACATCCTTTCAATCAAAACCAGTTCACGTCCATCAACTaGGCCAGACAGTTGGTGGGG +
Preference number: 4 (lower is better)
Translates to: SDPTENLWRTLHPFNQNQFTSIN*ARQLVG
Trigger: CCCCACCAACTGTCTGGCCCAGTTGATGGACGTGAA...CTGGTTTTGATTGAAAGGATGTAATGTTCTCCACAGGTTTTCAGTGGGATCTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp GCAGAGTGTAAGGATTCTGTTGATGCTGATCTGTGGCAGCTCTTGGTCGAGTCGTCTTGTTCTTCTTCTTaGTTGAGTTCACTTGCTTGG +
Preference number: 4 (lower is better)
Translates to: AECKDSVDADLWQLLVESSCSSS*LSSLAW
Trigger: CCAAGCAAGTGAACTCAACCAAGAAGAAGAACAAGA...CGACTCGACCAAGAGCTGCCACAGATCAGCATCAACAGAATCCTTACACTCTGC
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR TCA 90 bp TCTATATACAAACATGTTTCCGAACCAGAGCGACAGACACACAAACTGTTCACACCCTCCTCCTGTGCTTaGCGATGTAGTCATTGCGAA +
Preference number: 4 (lower is better)
Translates to: SIYKHVSEPERQTHKLFTPSSCA*RCSHCE
Trigger: TTCGCAATGACTACATCGTCAAGCACAGGAGGAGGG...TGTGAACAGTTTGTGTGTCTGTCGCTCTGGTTCGGAAACATGTTTGTATATAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp TCAGATCCCACTGAAAACCTGTGGAGAACATTACATCCTTTCAATCAAAACCAGTCCGACAACTTGTTTTaGAAGGCAGCCCTGGGACTG +
Preference number: 4 (lower is better)
Translates to: SDPTENLWRTLHPFNQNQSDNLF*KAALGL
Trigger: CAGTCCCAGGGCTGCCTTCCAAAACAAGTTGTCGGA...CTGGTTTTGATTGAAAGGATGTAATGTTCTCCACAGGTTTTCAGTGGGATCTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp GTAAAGCAAAATCAAAGTGGATGTGTGCCCCAAGACACACCCTTCAGCAGCATTGAGAATGACTTTTTATaGCAGCAGAAGGAAGGGCTC +
Preference number: 4 (lower is better)
Translates to: VKQNQSGCVPQDTPFSSIENDFL*QQKEGL
Trigger: GAGCCCTTCCTTCTGCTGCCATAAAAAGTCATTCTC...AATGCTGCTGAAGGGTGTGTCTTGGGGCACACATCCACTTTGATTTTGCTTTAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp ACGAAATGCTGCAATACAGTGACCCACAGGGGCTGGCTACTCCAGGTTGCTCATCAATGGACTTTATTTTaGTGGTTGAGCTATTCCATT +
Preference number: 4 (lower is better)
Translates to: TKCCNTVTHRGWLLQVAHQWTLF*WLSYSI
Trigger: AATGGAATAGCTCAACCACCAAAATAAAGTCCATTG...ATGAGCAACCTGGAGTAGCCAGCCCCTGTGGGTCACTGTATTGCAGCATTTCGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp AAAATCAAAGTGGATGTGTGCCCCAAGACACACCCTTCAGCAGCATTTATCCACTTACCTTCATCACATTaGTCACTTCGGGGGAGTCAA +
Preference number: 4 (lower is better)
Translates to: KIKVDVCPKTHPSAAFIHLPSSH*SLRGSQ
Trigger: TTGACTCCCCCGAAGTGACCAATGTGATGAAGGTAA...GTGGATAAATGCTGCTGAAGGGTGTGTCTTGGGGCACACATCCACTTTGATTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp GTAAAGCAAAATCAAAGTGGATGTGTGCCCCAAGACACACCCTTCAGCAGCATTTCCTCAAGTCTTGAGTaGGGATCTTGTGAACACTTT +
Preference number: 4 (lower is better)
Translates to: VKQNQSGCVPQDTPFSSISSSLE*GSCEHF
Trigger: AAAGTGTTCACAAGATCCCCACTCAAGACTTGAGGA...AATGCTGCTGAAGGGTGTGTCTTGGGGCACACATCCACTTTGATTTTGCTTTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp TCTATATACAAACATGTTTCCGAACCAGAGCGACAGACACACAAACTGTTCACACTTTCGGTACTGCAGTaGGTCCTTTGTAGAGAAGCG +
Preference number: 4 (lower is better)
Translates to: SIYKHVSEPERQTHKLFTLSVLQ*VLCREA
Trigger: CGCTTCTCTACAAAGGACCCACTGCAGTACCGAAAG...TGTGAACAGTTTGTGTGTCTGTCGCTCTGGTTCGGAAACATGTTTGTATATAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp TCTATATACAAACATGTTTCCGAACCAGAGCGACAGACACACAAACTGTTCACAGCTTTACTCAAGAAATaGCTCACTGTGGCCCCAGGA +
Preference number: 4 (lower is better)
Translates to: SIYKHVSEPERQTHKLFTALLKK*LTVAPG
Trigger: TCCTGGGGCCACAGTGAGCCATTTCTTGAGTAAAGC...TGTGAACAGTTTGTGTGTCTGTCGCTCTGGTTCGGAAACATGTTTGTATATAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR TCA 90 bp AAAATCAAAGTGGATGTGTGCCCCAAGACACACCCTTCAGCAGCATTTATCCACCACCAGAATTCGGCATaGAAAAATTGCAAGACTTCA +
Preference number: 4 (lower is better)
Translates to: KIKVDVCPKTHPSAAFIHHQNSA*KNCKTS
Trigger: TGAAGTCTTGCAATTTTTTCATGCCGAATTCTGGTG...GTGGATAAATGCTGCTGAAGGGTGTGTCTTGGGGCACACATCCACTTTGATTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR TCA 90 bp TCTATATACAAACATGTTTCCGAACCAGAGCGACAGACACACAAACTGTTCACACAGACAGGACAACCTTaGGGACATTGCCTTTGTACT +
Preference number: 4 (lower is better)
Translates to: SIYKHVSEPERQTHKLFTQTGQP*GHCLCT
Trigger: AGTACAAAGGCAATGTCCTCAAGGTTGTCCTGTCTG...TGTGAACAGTTTGTGTGTCTGTCGCTCTGGTTCGGAAACATGTTTGTATATAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp AAAATCAAAGTGGATGTGTGCCCCAAGACACACCCTTCAGCAGCATTTATCCACCAACAGGAGTCTTTCTaGTCACTCTGTTTTCCATTT +
Preference number: 4 (lower is better)
Translates to: KIKVDVCPKTHPSAAFIHQQESF*SLCFPF
Trigger: AAATGGAAAACAGAGTGACCAGAAAGACTCCTGTTG...GTGGATAAATGCTGCTGAAGGGTGTGTCTTGGGGCACACATCCACTTTGATTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR TCA 90 bp AAAATCAAAGTGGATGTGTGCCCCAAGACACACCCTTCAGCAGCATTTATCCACCTTTATTTTGGTGGTTaGGCTATTCCATTTAATGGC +
Preference number: 4 (lower is better)
Translates to: KIKVDVCPKTHPSAAFIHLYFGG*AIPFNG
Trigger: GCCATTAAATGGAATAGCTCAACCACCAAAATAAAG...GTGGATAAATGCTGCTGAAGGGTGTGTCTTGGGGCACACATCCACTTTGATTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR TCA 90 bp TCAGATCCCACTGAAAACCTGTGGAGAACATTACATCCTTTCAATCAAAACCAGCAAGATTCAATCAACTaGGCTATCTTTCTGCGCAGC +
Preference number: 4 (lower is better)
Translates to: SDPTENLWRTLHPFNQNQQDSIN*AIFLRS
Trigger: GCTGCGCAGAAAGATAGCTCAGTTGATTGAATCTTG...CTGGTTTTGATTGAAAGGATGTAATGTTCTCCACAGGTTTTCAGTGGGATCTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR GCA 90 bp TCAGATCCCACTGAAAACCTGTGGAGAACATTACATCCTTTCAATCAAAACCAGTTGTTGTTCACAAAATaGAGCTGGGTAGGCACTGCT +
Preference number: 4 (lower is better)
Translates to: SDPTENLWRTLHPFNQNQLLFTK*SWVGTA
Trigger: AGCAGTGCCTACCCAGCTGCATTTTGTGAACAACAA...CTGGTTTTGATTGAAAGGATGTAATGTTCTCCACAGGTTTTCAGTGGGATCTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR GCA 90 bp TCAGATCCCACTGAAAACCTGTGGAGAACATTACATCCTTTCAATCAAAACCAGACTGAGCTATCTTTCTaGGCAGCAGTTCAATGGACT +
Preference number: 4 (lower is better)
Translates to: SDPTENLWRTLHPFNQNQTELSF*AAVQWT
Trigger: AGTCCATTGAACTGCTGCGCAGAAAGATAGCTCAGT...CTGGTTTTGATTGAAAGGATGTAATGTTCTCCACAGGTTTTCAGTGGGATCTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR GCA 90 bp TCTATATACAAACATGTTTCCGAACCAGAGCGACAGACACACAAACTGTTCACACATGTGGTTAGTTTCTaGCACATTCTGGTAGGTCAG +
Preference number: 4 (lower is better)
Translates to: SIYKHVSEPERQTHKLFTHVVSF*HILVGQ
Trigger: CTGACCTACCAGAATGTGGCAGAAACTAACCACATG...TGTGAACAGTTTGTGTGTCTGTCGCTCTGGTTCGGAAACATGTTTGTATATAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp TCTATATACAAACATGTTTCCGAACCAGAGCGACAGACACACAAACTGTTCACAGAGAATGACTTTTTATaGCAGCAGAAGGAAGGGCTC +
Preference number: 4 (lower is better)
Translates to: SIYKHVSEPERQTHKLFTENDFL*QQKEGL
Trigger: GAGCCCTTCCTTCTGCTGCCATAAAAAGTCATTCTC...TGTGAACAGTTTGTGTGTCTGTCGCTCTGGTTCGGAAACATGTTTGTATATAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR GCA 90 bp TCTATATACAAACATGTTTCCGAACCAGAGCGACAGACACACAAACTGTTCACATATTTCCCACTGCCTTaGTTTCCATCTGCTTGTCTT +
Preference number: 4 (lower is better)
Translates to: SIYKHVSEPERQTHKLFTYFPLP*FPSACL
Trigger: AAGACAAGCAGATGGAAAGCAAGGCAGTGGGAAATA...TGTGAACAGTTTGTGTGTCTGTCGCTCTGGTTCGGAAACATGTTTGTATATAGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR GCA 90 bp TCTATATACAAACATGTTTCCGAACCAGAGCGACAGACACACAAACTGTTCACAAAATACTCTTTATTCTaGACAGAGGAAACCTGGCCC +
Preference number: 4 (lower is better)
Translates to: SIYKHVSEPERQTHKLFTKYSLF*TEETWP
Trigger: GGGCCAGGTTTCCTCTGTGCAGAATAAAGAGTATTT...TGTGAACAGTTTGTGTGTCTGTCGCTCTGGTTCGGAAACATGTTTGTATATAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR GCA 90 bp AAAATCAAAGTGGATGTGTGCCCCAAGACACACCCTTCAGCAGCATTTATCCACTTGGTTGAGTTCACTTaGTTGGTTTTATTCTTGCTT +
Preference number: 4 (lower is better)
Translates to: KIKVDVCPKTHPSAAFIHLVEFT*LVLFLL
Trigger: AAGCAAGAATAAAACCAAGCAAGTGAACTCAACCAA...GTGGATAAATGCTGCTGAAGGGTGTGTCTTGGGGCACACATCCACTTTGATTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR GCA 90 bp AAAATCAAAGTGGATGTGTGCCCCAAGACACACCCTTCAGCAGCATTTATCCACATTTTCAACATCATCTaGCTCTTCATGTGGTTAGTT +
Preference number: 4 (lower is better)
Translates to: KIKVDVCPKTHPSAAFIHIFNII*LFMWLV
Trigger: AACTAACCACATGAAGAGGCAGATGATGTTGAAAAT...GTGGATAAATGCTGCTGAAGGGTGTGTCTTGGGGCACACATCCACTTTGATTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp GTAAAGCAAAATCAAAGTGGATGTGTGCCCCAAGACACACCCTTCAGCAGCATTCAATGGACTTTATTTTaGTGGTTGAGCTATTCCATT +
Preference number: 4 (lower is better)
Translates to: VKQNQSGCVPQDTPFSSIQWTLF*WLSYSI
Trigger: AATGGAATAGCTCAACCACCAAAATAAAGTCCATTG...AATGCTGCTGAAGGGTGTGTCTTGGGGCACACATCCACTTTGATTTTGCTTTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp GTAAAGCAAAATCAAAGTGGATGTGTGCCCCAAGACACACCCTTCAGCAGCATTTTGAGTTCACTTGCTTaGTTTTATTCTTGCTTACAG +
Preference number: 4 (lower is better)
Translates to: VKQNQSGCVPQDTPFSSILSSLA*FYSCLQ
Trigger: CTGTAAGCAAGAATAAAACCAAGCAAGTGAACTCAA...AATGCTGCTGAAGGGTGTGTCTTGGGGCACACATCCACTTTGATTTTGCTTTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp TCTATATACAAACATGTTTCCGAACCAGAGCGACAGACACACAAACTGTTCACAATCTGCCTCTTCATGTaGTTAGTTTCTGCCACATTC +
Preference number: 4 (lower is better)
Translates to: SIYKHVSEPERQTHKLFTICLFM*LVSATF
Trigger: GAATGTGGCAGAAACTAACCACATGAAGAGGCAGAT...TGTGAACAGTTTGTGTGTCTGTCGCTCTGGTTCGGAAACATGTTTGTATATAGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR TCA 90 bp TCAGATCCCACTGAAAACCTGTGGAGAACATTACATCCTTTCAATCAAAACCAGTTTTTAAGCTGTTTCTaGACCAAAGAGTGCAGACGA +
Preference number: 4 (lower is better)
Translates to: SDPTENLWRTLHPFNQNQFLSCF*TKECRR
Trigger: TCGTCTGCACTCTTTGGTTCAGAAACAGCTTAAAAA...CTGGTTTTGATTGAAAGGATGTAATGTTCTCCACAGGTTTTCAGTGGGATCTGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR GCA 90 bp TCAGATCCCACTGAAAACCTGTGGAGAACATTACATCCTTTCAATCAAAACCAGAGCAAAAGCAACAGCTaGTTTACTCAAGAAATGGCT +
Preference number: 4 (lower is better)
Translates to: SDPTENLWRTLHPFNQNQSKSNS*FTQEMA
Trigger: AGCCATTTCTTGAGTAAAGCAGCTGTTGCTTTTGCT...CTGGTTTTGATTGAAAGGATGTAATGTTCTCCACAGGTTTTCAGTGGGATCTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR TCA 90 bp TCTATATACAAACATGTTTCCGAACCAGAGCGACAGACACACAAACTGTTCACACTTTATTTTGGTGGTTaGGCTATTCCATTTAATGGC +
Preference number: 4 (lower is better)
Translates to: SIYKHVSEPERQTHKLFTLYFGG*AIPFNG
Trigger: GCCATTAAATGGAATAGCTCAACCACCAAAATAAAG...TGTGAACAGTTTGTGTGTCTGTCGCTCTGGTTCGGAAACATGTTTGTATATAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR GCA 90 bp TCTATATACAAACATGTTTCCGAACCAGAGCGACAGACACACAAACTGTTCACATTGGTTGAGTTCACTTaGTTGGTTTTATTCTTGCTT +
Preference number: 4 (lower is better)
Translates to: SIYKHVSEPERQTHKLFTLVEFT*LVLFLL
Trigger: AAGCAAGAATAAAACCAAGCAAGTGAACTCAACCAA...TGTGAACAGTTTGTGTGTCTGTCGCTCTGGTTCGGAAACATGTTTGTATATAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR GCA 90 bp TCTATATACAAACATGTTTCCGAACCAGAGCGACAGACACACAAACTGTTCACAATTTTCAACATCATCTaGCTCTTCATGTGGTTAGTT +
Preference number: 4 (lower is better)
Translates to: SIYKHVSEPERQTHKLFTIFNII*LFMWLV
Trigger: AACTAACCACATGAAGAGGCAGATGATGTTGAAAAT...TGTGAACAGTTTGTGTGTCTGTCGCTCTGGTTCGGAAACATGTTTGTATATAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CCA 90 bp TCAGATCCCACTGAAAACCTGTGGAGAACATTACATCCTTTCAATCAAAACCAGTTGAGTTCACTTGCTTaGTTTTATTCTTGCTTACAG +
Preference number: 4 (lower is better)
Translates to: SDPTENLWRTLHPFNQNQLSSLA*FYSCLQ
Trigger: CTGTAAGCAAGAATAAAACCAAGCAAGTGAACTCAA...CTGGTTTTGATTGAAAGGATGTAATGTTCTCCACAGGTTTTCAGTGGGATCTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS TCA 90 bp CACGTCCATCAACTGGGCCAGACAGTTGGTGGGGACCACCAGCTCTaGGGGCGCCATAACGGTCAGCGGCATCCCTGGATGCACGGGTTC +
Preference number: 5 (lower is better)
Translates to: HVHQLGQTVGGDHQL*GRHNGQRHPWMHGF
Trigger: GAACCCGTGCATCCAGGGATGCCGCTGACCGTTATGGCGCCCTCAGAGCTGGTGGTCCCCACCAACTGTCTGGCCCAGTTGATGGACGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS TCA 90 bp GCTTTGGGATGCTGGTTCTCTTGGGTTCCAGCTTGGCCACAGTTTTaGATGGCCGCTTGGCCCCAGCCCGCTCGTGGACCCTCCTCCTGT +
Preference number: 5 (lower is better)
Translates to: ALGCWFSWVPAWPQF*MAAWPQPARGPSSC
Trigger: ACAGGAGGAGGGTCCACGAGCGGGCTGGGGCCAAGCGGCCATTCAAAACTGTGGCCAAGCTGGAACCCAAGAGAACCAGCATCCCAAAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CCA 90 bp TGGGATGCTGGTTCTCTTGGGTTCCAGCTTGGCCACAGTTTTGAATaGCCGCTTGGCCCCAGCCCGCTCGTGGACCCTCCTCCTGTGCTT +
Preference number: 5 (lower is better)
Translates to: WDAGSLGFQLGHSFE*PLGPSPLVDPPPVL
Trigger: AAGCACAGGAGGAGGGTCCACGAGCGGGCTGGGGCCAAGCGGCCATTCAAAACTGTGGCCAAGCTGGAACCCAAGAGAACCAGCATCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp CTCACGGCTCCGCAGAGCACAGCTAGAACTCACAGTGGGAGGGGCCAAGTACAGTCCACCTCAACATTCTaGTTCCCCAACAGGCTCACC +
Preference number: 5 (lower is better)
Translates to: LTAPQSTARTHSGRGQVQSTSTF*FPNRLT
Trigger: GGTGAGCCTGTTGGGGAACAAGAATGTTGAGGTGGA...CTGTACTTGGCCCCTCCCACTGTGAGTTCTAGCTGTGCTCTGCGGAGCCGTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CCA 90 bp TTGTGTGTCTTGTCTTTGTTCGCGTGGAGAGAGAACCGAGACAGCTaGTCCGACAACTTGTTTTGGAAGGCAGCCCTGGGACTGGGGCCC +
Preference number: 5 (lower is better)
Translates to: LCVLSLFAWRENRDS*SDNLFWKAALGLGP
Trigger: GGGCCCCAGTCCCAGGGCTGCCTTCCAAAACAAGTTGTCGGACCAGCTGTCTCGGTTCTCTCTCCACGCGAACAAAGACAAGACACACAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp CTCCGCAGAGCACAGCTAGAACTCACAGTGGGAGGGGCCAAGTACAGCTCTCTAGCAGACATAAGTGTCTaGGCTCTGCCCAGGGCCTTT +
Preference number: 5 (lower is better)
Translates to: LRRAQLELTVGGAKYSSLADISV*ALPRAF
Trigger: AAAGGCCCTGGGCAGAGCCAAGACACTTATGTCTGC...TAGAGAGCTGTACTTGGCCCCTCCCACTGTGAGTTCTAGCTGTGCTCTGCGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS TCA 90 bp GTCCGACAACTTGTTTTGGAAGGCAGCCCTGGGACTGGGGCCCTTTaGGAGTTCCATGCTCTGCTTTGGGATGCTGGTTCTCTTGGGTTC +
Preference number: 5 (lower is better)
Translates to: VRQLVLEGSPGTGAL*EFHALLWDAGSLGF
Trigger: GAACCCAAGAGAACCAGCATCCCAAAGCAGAGCATGGAACTCTCAAAGGGCCCCAGTCCCAGGGCTGCCTTCCAAAACAAGTTGTCGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CCA 90 bp GAGAAGGGAACCTTTGAAGGCAAAGAGGCAAGCGGCAGGAGCTGCTaGGAGTTACTGCGGGCCCCTCTTCTGTCATCAGCAAAAGCAACA +
Preference number: 5 (lower is better)
Translates to: EKGTFEGKEASGRSC*ELLRAPLLSSAKAT
Trigger: TGTTGCTTTTGCTGATGACAGAAGAGGGGCCCGCAGTAACTCCCAGCAGCTCCTGCCGCTTGCCTCTTTGCCTTCAAAGGTTCCCTTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp ACGAAATGCTGCAATACAGTGACCCACAGGGGCTGGCTACTCCAGGTTGCTCATCTCAACACGGCCCCTTaGGGGATCAGCACTGGAGTA +
Preference number: 5 (lower is better)
Translates to: TKCCNTVTHRGWLLQVAHLNTAP*GISTGV
Trigger: TACTCCAGTGCTGATCCCCAAAGGGGCCGTGTTGAG...ATGAGCAACCTGGAGTAGCCAGCCCCTGTGGGTCACTGTATTGCAGCATTTCGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp CTCACGGCTCCGCAGAGCACAGCTAGAACTCACAGTGGGAGGGGCCAAGTACAGTCCTCTTTTCTAGATTaGGGCCGAAGAGATGTCTCC +
Preference number: 5 (lower is better)
Translates to: LTAPQSTARTHSGRGQVQSSFLD*GRRDVS
Trigger: GGAGACATCTCTTCGGCCCAAATCTAGAAAAGAGGA...CTGTACTTGGCCCCTCCCACTGTGAGTTCTAGCTGTGCTCTGCGGAGCCGTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp CTCACGGCTCCGCAGAGCACAGCTAGAACTCACAGTGGGAGGGGCCAAGTACAGTCAGACAGGACAACCTaGAGGACATTGCCTTTGTAC +
Preference number: 5 (lower is better)
Translates to: LTAPQSTARTHSGRGQVQSDRTT*RTLPLY
Trigger: GTACAAAGGCAATGTCCTCAAGGTTGTCCTGTCTGA...CTGTACTTGGCCCCTCCCACTGTGAGTTCTAGCTGTGCTCTGCGGAGCCGTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp ACTGAGTCCCCAGGTGAAGAACCAGTCACAGCAGACCCTACACAGCCTGCTTTCGCAGCACCAGCGTTGTaGTTCACAAAATGCAGCTGG +
Preference number: 5 (lower is better)
Translates to: TESPGEEPVTADPTQPAFAAPAL*FTKCSW
Trigger: CCAGCTGCATTTTGTGAACAACAACGCTGGTGCTGC...GAAAGCAGGCTGTGTAGGGTCTGCTGTGACTGGTTCTTCACCTGGGGACTCAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp CTGATACACGCCCAATTAAAGCAAAGCTCACGGCTCCGCAGAGCACAGCTAGAAAGCTTGGCCACAGTTTaGAATGGCCGCTTGGCCCCA +
Preference number: 5 (lower is better)
Translates to: LIHAQLKQSSRLRRAQLESLATV*NGRLAP
Trigger: TGGGGCCAAGCGGCCATTCAAAACTGTGGCCAAGCT...TTCTAGCTGTGCTCTGCGGAGCCGTGAGCTTTGCTTTAATTGGGCGTGTATCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS GCA 90 bp CTGCAGTGGGAACAGATGAACCTGATCTCCTCGTGCTGCAGCGTGTaGTTTCGGTACTGCAGTGGGTCCTTTGTAGAGAAGCGACACTTA +
Preference number: 5 (lower is better)
Translates to: LQWEQMNLISSCCSV*FRYCSGSFVEKRHL
Trigger: TAAGTGTCGCTTCTCTACAAAGGACCCACTGCAGTACCGAAAGCACACGCTGCAGCACGAGGAGATCAGGTTCATCTGTTCCCACTGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp ACGAAATGCTGCAATACAGTGACCCACAGGGGCTGGCTACTCCAGGTTGCTCATCTCTTGGGTTCCAGCTaGGCCACAGTTTTGAATGGC +
Preference number: 5 (lower is better)
Translates to: TKCCNTVTHRGWLLQVAHLLGSS*ATVLNG
Trigger: GCCATTCAAAACTGTGGCCAAGCTGGAACCCAAGAG...ATGAGCAACCTGGAGTAGCCAGCCCCTGTGGGTCACTGTATTGCAGCATTTCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp GCAGAGTGTAAGGATTCTGTTGATGCTGATCTGTGGCAGCTCTTGGTCGAGTCGGTCCGACAACTTGTTTaGGAAGGCAGCCCTGGGACT +
Preference number: 5 (lower is better)
Translates to: AECKDSVDADLWQLLVESVRQLV*EGSPGT
Trigger: AGTCCCAGGGCTGCCTTCCAAAACAAGTTGTCGGAC...CGACTCGACCAAGAGCTGCCACAGATCAGCATCAACAGAATCCTTACACTCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS TCA 90 bp AGGCGGGCGTTTTCTTCCAACGGAAACAGTTTAAGCACAAGCTGCTaGGCACCATTGACAACCTTCACGTCCATCAACTGGGCCAGACAG +
Preference number: 5 (lower is better)
Translates to: RRAFSSNGNSLSTSC*APLTTFTSINWARQ
Trigger: CTGTCTGGCCCAGTTGATGGACGTGAAGGTTGTCAATGGTGCTCAGCAGCTTGTGCTTAAACTGTTTCCGTTGGAAGAAAACGCCCGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS GCA 90 bp CGCAGCACCAGCGTTGTTGTTCACAAAATGCAGCTGGGTAGGCACTaGTCGAAGGCTGCACTTAAAGCAGACATAAGTGTCTTGGCTCTG +
Preference number: 5 (lower is better)
Translates to: RSTSVVVHKMQLGRH*SKAALKADISVLAL
Trigger: CAGAGCCAAGACACTTATGTCTGCTTTAAGTGCAGCCTTCGAGCAGTGCCTACCCAGCTGCATTTTGTGAACAACAACGCTGGTGCTGCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
ENSMUST00000180214.8
CDS CCA 90 bp GAGCCTGTCTGTTTCATAGGGCAGAATGGAAGTGTTCCTGCTAACTaGGCTTCGCTGCAAGGTATGCTAACAGGTGTGTCACAGGTAGCC +
Preference number: 5 (lower is better)
Translates to: EPVCFIGQNGSVPAN*ASLQGMLTGVSQVA
Trigger: GGCTACCTGTGACACACCTGTTAGCATACCTTGCAGCGAAGCCCAGTTAGCAGGAACACTTCCATTCTGCCCTATGAAACAGACAGGCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp CTGATACACGCCCAATTAAAGCAAAGCTCACGGCTCCGCAGAGCACAGCTAGAACTCTTGGGTTCCAGCTaGGCCACAGTTTTGAATGGC +
Preference number: 5 (lower is better)
Translates to: LIHAQLKQSSRLRRAQLELLGSS*ATVLNG
Trigger: GCCATTCAAAACTGTGGCCAAGCTGGAACCCAAGAG...TTCTAGCTGTGCTCTGCGGAGCCGTGAGCTTTGCTTTAATTGGGCGTGTATCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp ATGATCCTATGCTCAAGTGTGTGCTGGCACACTCTCAGGCTTTGCACTGAGTCCTCCACCTCAACATTCTaGTTCCCCAACAGGCTCACC +
Preference number: 5 (lower is better)
Translates to: MILCSSVCWHTLRLCTESSTSTF*FPNRLT
Trigger: GGTGAGCCTGTTGGGGAACAAGAATGTTGAGGTGGA...GGACTCAGTGCAAAGCCTGAGAGTGTGCCAGCACACACTTGAGCATAGGATCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp CTCCGCAGAGCACAGCTAGAACTCACAGTGGGAGGGGCCAAGTACAGCTCTCTATTGCTTTCCATCTGCTaGTCTTCCAGCTTCCTATCA +
Preference number: 5 (lower is better)
Translates to: LRRAQLELTVGGAKYSSLLLSIC*SSSFLS
Trigger: TGATAGGAAGCTGGAAGACAAGCAGATGGAAAGCAA...TAGAGAGCTGTACTTGGCCCCTCCCACTGTGAGTTCTAGCTGTGCTCTGCGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp ACTGAGTCCCCAGGTGAAGAACCAGTCACAGCAGACCCTACACAGCCTGCTTTCGTATTTCCCACTGCCTaGCTTTCCATCTGCTTGTCT +
Preference number: 5 (lower is better)
Translates to: TESPGEEPVTADPTQPAFVFPTA*LSICLS
Trigger: AGACAAGCAGATGGAAAGCAAGGCAGTGGGAAATAC...GAAAGCAGGCTGTGTAGGGTCTGCTGTGACTGGTTCTTCACCTGGGGACTCAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp ACTGAGTCCCCAGGTGAAGAACCAGTCACAGCAGACCCTACACAGCCTGCTTTCATTACCTTCATCACATaGGTCACTTCGGGGGAGTCA +
Preference number: 5 (lower is better)
Translates to: TESPGEEPVTADPTQPAFITFIT*VTSGES
Trigger: TGACTCCCCCGAAGTGACCAATGTGATGAAGGTAAT...GAAAGCAGGCTGTGTAGGGTCTGCTGTGACTGGTTCTTCACCTGGGGACTCAGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS TCA 90 bp GGCCTCCGGTACATTTTCAGATCCAGAGCTCAGCGAAAACACGGATaGGATGATTGGGCCTTCAAACGTGGCACCTGCTGTTTCAGAAGT +
Preference number: 5 (lower is better)
Translates to: GLRYIFRSRAQRKHG*DDWAFKRGTCCFRS
Trigger: ACTTCTGAAACAGCAGGTGCCACGTTTGAAGGCCCAATCATCTCATCCGTGTTTTCGCTGAGCTCTGGATCTGAAAATGTACCGGAGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CCA 90 bp GAACCTGATCTCCTCGTGCTGCAGCGTGTGCTTTCGGTACTGCAGTaGGTCCTTTGTAGAGAAGCGACACTTATCACAGTAGTATTTGCC +
Preference number: 5 (lower is better)
Translates to: EPDLLVLQRVLSVLQ*VLCREATLITVVFA
Trigger: GGCAAATACTACTGTGATAAGTGTCGCTTCTCTACAAAGGACCCACTGCAGTACCGAAAGCACACGCTGCAGCACGAGGAGATCAGGTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CCA 90 bp TCCCCAACAGGCTCACCTCCCTGGGCTCGGACAGGGTCACTTTGTTaGGAATACACACTACATCTTTTTGGTACTTCTTTAGCTCGGGTA +
Preference number: 5 (lower is better)
Translates to: SPTGSPPWARTGSLC*EYTLHLFGTSLARV
Trigger: TACCCGAGCTAAAGAAGTACCAAAAAGATGTAGTGTGTATTCCCAACAAAGTGACCCTGTCCGAGCCCAGGGAGGTGAGCCTGTTGGGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp ACTGAGTCCCCAGGTGAAGAACCAGTCACAGCAGACCCTACACAGCCTGCTTTCTTGCTTTCCATCTGCTaGTCTTCCAGCTTCCTATCA +
Preference number: 5 (lower is better)
Translates to: TESPGEEPVTADPTQPAFLLSIC*SSSFLS
Trigger: TGATAGGAAGCTGGAAGACAAGCAGATGGAAAGCAA...GAAAGCAGGCTGTGTAGGGTCTGCTGTGACTGGTTCTTCACCTGGGGACTCAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp GCAGAGTGTAAGGATTCTGTTGATGCTGATCTGTGGCAGCTCTTGGTCGAGTCGCTTTTGAGGTCAGCTTaGGTGCCTGACCTATGGAAC +
Preference number: 5 (lower is better)
Translates to: AECKDSVDADLWQLLVESLLRSA*VPDLWN
Trigger: GTTCCATAGGTCAGGCACCAAAGCTGACCTCAAAAG...CGACTCGACCAAGAGCTGCCACAGATCAGCATCAACAGAATCCTTACACTCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp AAAATCAAAGTGGATGTGTGCCCCAAGACACACCCTTCAGCAGCATTTATCCACCTCAACACGGCCCCTTaGGGGATCAGCACTGGAGTA +
Preference number: 5 (lower is better)
Translates to: KIKVDVCPKTHPSAAFIHLNTAP*GISTGV
Trigger: TACTCCAGTGCTGATCCCCAAAGGGGCCGTGTTGAG...GTGGATAAATGCTGCTGAAGGGTGTGTCTTGGGGCACACATCCACTTTGATTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS TCA 90 bp CCGGTACATTTTCAGATCCAGAGCTCAGCGAAAACACGGATGAGATaGTTGGGCCTTCAAACGTGGCACCTGCTGTTTCAGAAGTCTTGG +
Preference number: 5 (lower is better)
Translates to: PVHFQIQSSAKTRMR*LGLQTWHLLFQKSW
Trigger: CCAAGACTTCTGAAACAGCAGGTGCCACGTTTGAAGGCCCAATCATCTCATCCGTGTTTTCGCTGAGCTCTGGATCTGAAAATGTACCGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS TCA 90 bp CTGCAAGGTATGCTAACAGGTGTGTCACAGGTAGCCTCTATGATGTaGGCATCTTCAGAAGAGTTAAGGACCCTCAACACGGCCCCTTTG +
Preference number: 5 (lower is better)
Translates to: LQGMLTGVSQVASMM*ASSEELRTLNTAPL
Trigger: CAAAGGGGCCGTGTTGAGGGTCCTTAACTCTTCTGAAGATGCTCACATCATAGAGGCTACCTGTGACACACCTGTTAGCATACCTTGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS GCA 90 bp ACAGAGGAAACCTGGCCCGTATTTCCCACTGCCTTGCTTTCCATCTaGTTGTCTTCCAGCTTCCTATCAGAGGAAACCAAGGTTTCAGGA +
Preference number: 5 (lower is better)
Translates to: TEETWPVFPTALLSI*LSSSFLSEETKVSG
Trigger: TCCTGAAACCTTGGTTTCCTCTGATAGGAAGCTGGAAGACAAGCAGATGGAAAGCAAGGCAGTGGGAAATACGGGCCAGGTTTCCTCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp ACTGAGTCCCCAGGTGAAGAACCAGTCACAGCAGACCCTACACAGCCTGCTTTCGAGGAAAGATTCTTGTaGACTGTGGACACCAGAATT +
Preference number: 5 (lower is better)
Translates to: TESPGEEPVTADPTQPAFEERFL*TVDTRI
Trigger: AATTCTGGTGTCCACAGTCAACAAGAATCTTTCCTC...GAAAGCAGGCTGTGTAGGGTCTGCTGTGACTGGTTCTTCACCTGGGGACTCAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp ATGATCCTATGCTCAAGTGTGTGCTGGCACACTCTCAGGCTTTGCACTGAGTCCGGATTGGCCTGCATCTaGTTCTTCTTCTTGGTTGAG +
Preference number: 5 (lower is better)
Translates to: MILCSSVCWHTLRLCTESGLACI*FFFLVE
Trigger: CTCAACCAAGAAGAAGAACAAGATGCAGGCCAATCC...GGACTCAGTGCAAAGCCTGAGAGTGTGCCAGCACACACTTGAGCATAGGATCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp CTGATACACGCCCAATTAAAGCAAAGCTCACGGCTCCGCAGAGCACAGCTAGAAATTACCTTCATCACATaGGTCACTTCGGGGGAGTCA +
Preference number: 5 (lower is better)
Translates to: LIHAQLKQSSRLRRAQLEITFIT*VTSGES
Trigger: TGACTCCCCCGAAGTGACCAATGTGATGAAGGTAAT...TTCTAGCTGTGCTCTGCGGAGCCGTGAGCTTTGCTTTAATTGGGCGTGTATCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp CTCCGCAGAGCACAGCTAGAACTCACAGTGGGAGGGGCCAAGTACAGCTCTCTAACAACCTTGAGGACATaGCCTTTGTACTTGTTGATT +
Preference number: 5 (lower is better)
Translates to: LRRAQLELTVGGAKYSSLTTLRT*PLYLLI
Trigger: AATCAACAAGTACAAAGGCAATGTCCTCAAGGTTGT...TAGAGAGCTGTACTTGGCCCCTCCCACTGTGAGTTCTAGCTGTGCTCTGCGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS TCA 90 bp AGTAAGGGACACACTCATTTCTTGAATAGCCTTGGGAGTTGCTTTTaGGGTCAGCTTTGGTGCCTGACCTATGGAACGTCGCTGAGCACT +
Preference number: 5 (lower is better)
Translates to: SKGHTHFLNSLGSCF*GQLWCLTYGTSLST
Trigger: AGTGCTCAGCGACGTTCCATAGGTCAGGCACCAAAGCTGACCTCAAAAGCAACTCCCAAGGCTATTCAAGAAATGAGTGTGTCCCTTACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS GCA 90 bp CTTTATTCTGCACAGAGGAAACCTGGCCCGTATTTCCCACTGCCTTaGTTTCCATCTGCTTGTCTTCCAGCTTCCTATCAGAGGAAACCA +
Preference number: 5 (lower is better)
Translates to: LYSAQRKPGPYFPLP*FPSACLPASYQRKP
Trigger: TGGTTTCCTCTGATAGGAAGCTGGAAGACAAGCAGATGGAAAGCAAGGCAGTGGGAAATACGGGCCAGGTTTCCTCTGTGCAGAATAAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp AAAATCAAAGTGGATGTGTGCCCCAAGACACACCCTTCAGCAGCATTTATCCACGCAGCACCAGCGTTGTaGTTCACAAAATGCAGCTGG +
Preference number: 5 (lower is better)
Translates to: KIKVDVCPKTHPSAAFIHAAPAL*FTKCSW
Trigger: CCAGCTGCATTTTGTGAACAACAACGCTGGTGCTGC...GTGGATAAATGCTGCTGAAGGGTGTGTCTTGGGGCACACATCCACTTTGATTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp AAAATCAAAGTGGATGTGTGCCCCAAGACACACCCTTCAGCAGCATTTATCCACGTTCCATGCTCTGCTTaGGGATGCTGGTTCTCTTGG +
Preference number: 5 (lower is better)
Translates to: KIKVDVCPKTHPSAAFIHVPCSA*GCWFSW
Trigger: CCAAGAGAACCAGCATCCCAAAGCAGAGCATGGAAC...GTGGATAAATGCTGCTGAAGGGTGTGTCTTGGGGCACACATCCACTTTGATTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp GCAGAGTGTAAGGATTCTGTTGATGCTGATCTGTGGCAGCTCTTGGTCGAGTCGGACAAAGAGGAAGGCTaGCCACAAGATTCAATCAAC +
Preference number: 5 (lower is better)
Translates to: AECKDSVDADLWQLLVESDKEEG*PQDSIN
Trigger: GTTGATTGAATCTTGTGGCAAGCCTTCCTCTTTGTC...CGACTCGACCAAGAGCTGCCACAGATCAGCATCAACAGAATCCTTACACTCTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp AAAATCAAAGTGGATGTGTGCCCCAAGACACACCCTTCAGCAGCATTTATCCACAGAAACTGGCCTTCCTaGCCTGATGGAGTCACTGCT +
Preference number: 5 (lower is better)
Translates to: KIKVDVCPKTHPSAAFIHRNWPS*PDGVTA
Trigger: AGCAGTGACTCCATCAGGCAAGGAAGGCCAGTTTCT...GTGGATAAATGCTGCTGAAGGGTGTGTCTTGGGGCACACATCCACTTTGATTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp ACTGAGTCCCCAGGTGAAGAACCAGTCACAGCAGACCCTACACAGCCTGCTTTCTTGAGGACATTGCCTTaGTACTTGTTGATTACCTTC +
Preference number: 5 (lower is better)
Translates to: TESPGEEPVTADPTQPAFLRTLP*YLLITF
Trigger: GAAGGTAATCAACAAGTACAAAGGCAATGTCCTCAA...GAAAGCAGGCTGTGTAGGGTCTGCTGTGACTGGTTCTTCACCTGGGGACTCAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS TCA 90 bp ATTACCTTCATCACATTGGTCACTTCGGGGGAGTCAACGTCAGGATaGTTTAGCACAATGACAGGCTGGTTCCGACGGGGACATTTAATC +
Preference number: 5 (lower is better)
Translates to: ITFITLVTSGESTSG*FSTMTGWFRRGHLI
Trigger: GATTAAATGTCCCCGTCGGAACCAGCCTGTCATTGTGCTAAATCATCCTGACGTTGACTCCCCCGAAGTGACCAATGTGATGAAGGTAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS GCA 90 bp CTATGGAACGTCGCTGAGCACTATTGGCAGACAAAGAGGAAGGCTTaGCACAAGATTCAATCAACTGAGCTATCTTTCTGCGCAGCAGTT +
Preference number: 5 (lower is better)
Translates to: LWNVAEHYWQTKRKA*HKIQSTELSFCAAV
Trigger: AACTGCTGCGCAGAAAGATAGCTCAGTTGATTGAATCTTGTGGCAAGCCTTCCTCTTTGTCTGCCAATAGTGCTCAGCGACGTTCCATAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp TCAGATCCCACTGAAAACCTGTGGAGAACATTACATCCTTTCAATCAAAACCAGGCAGACATAAGTGTCTaGGCTCTGCCCAGGGCCTTT +
Preference number: 5 (lower is better)
Translates to: SDPTENLWRTLHPFNQNQADISV*ALPRAF
Trigger: AAAGGCCCTGGGCAGAGCCAAGACACTTATGTCTGC...CTGGTTTTGATTGAAAGGATGTAATGTTCTCCACAGGTTTTCAGTGGGATCTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp TCTATATACAAACATGTTTCCGAACCAGAGCGACAGACACACAAACTGTTCACAGTCCGACAACTTGTTTaGGAAGGCAGCCCTGGGACT +
Preference number: 5 (lower is better)
Translates to: SIYKHVSEPERQTHKLFTVRQLV*EGSPGT
Trigger: AGTCCCAGGGCTGCCTTCCAAAACAAGTTGTCGGAC...TGTGAACAGTTTGTGTGTCTGTCGCTCTGGTTCGGAAACATGTTTGTATATAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp ATGATCCTATGCTCAAGTGTGTGCTGGCACACTCTCAGGCTTTGCACTGAGTCCGGTAATAACATCAGGTaGTGTGTCTTGTCTTTGTTC +
Preference number: 5 (lower is better)
Translates to: MILCSSVCWHTLRLCTESGNNIR*CVLSLF
Trigger: GAACAAAGACAAGACACACAACCTGATGTTATTACC...GGACTCAGTGCAAAGCCTGAGAGTGTGCCAGCACACACTTGAGCATAGGATCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp AAAATCAAAGTGGATGTGTGCCCCAAGACACACCCTTCAGCAGCATTTATCCACGTATTTCCCACTGCCTaGCTTTCCATCTGCTTGTCT +
Preference number: 5 (lower is better)
Translates to: KIKVDVCPKTHPSAAFIHVFPTA*LSICLS
Trigger: AGACAAGCAGATGGAAAGCAAGGCAGTGGGAAATAC...GTGGATAAATGCTGCTGAAGGGTGTGTCTTGGGGCACACATCCACTTTGATTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp ACGAAATGCTGCAATACAGTGACCCACAGGGGCTGGCTACTCCAGGTTGCTCATTCAATGGACTTTATTTaGGTGGTTGAGCTATTCCAT +
Preference number: 5 (lower is better)
Translates to: TKCCNTVTHRGWLLQVAHSMDFI*VVELFH
Trigger: ATGGAATAGCTCAACCACCAAAATAAAGTCCATTGA...ATGAGCAACCTGGAGTAGCCAGCCCCTGTGGGTCACTGTATTGCAGCATTTCGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp AAAATCAAAGTGGATGTGTGCCCCAAGACACACCCTTCAGCAGCATTTATCCACTCCTCTTTTCTAGATTaGGGCCGAAGAGATGTCTCC +
Preference number: 5 (lower is better)
Translates to: KIKVDVCPKTHPSAAFIHSSFLD*GRRDVS
Trigger: GGAGACATCTCTTCGGCCCAAATCTAGAAAAGAGGA...GTGGATAAATGCTGCTGAAGGGTGTGTCTTGGGGCACACATCCACTTTGATTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp GTAAAGCAAAATCAAAGTGGATGTGTGCCCCAAGACACACCCTTCAGCAGCATTGGATTGGCCTGCATCTaGTTCTTCTTCTTGGTTGAG +
Preference number: 5 (lower is better)
Translates to: VKQNQSGCVPQDTPFSSIGLACI*FFFLVE
Trigger: CTCAACCAAGAAGAAGAACAAGATGCAGGCCAATCC...AATGCTGCTGAAGGGTGTGTCTTGGGGCACACATCCACTTTGATTTTGCTTTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp CTGATACACGCCCAATTAAAGCAAAGCTCACGGCTCCGCAGAGCACAGCTAGAATTGAGGACATTGCCTTaGTACTTGTTGATTACCTTC +
Preference number: 5 (lower is better)
Translates to: LIHAQLKQSSRLRRAQLELRTLP*YLLITF
Trigger: GAAGGTAATCAACAAGTACAAAGGCAATGTCCTCAA...TTCTAGCTGTGCTCTGCGGAGCCGTGAGCTTTGCTTTAATTGGGCGTGTATCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp GTAAAGCAAAATCAAAGTGGATGTGTGCCCCAAGACACACCCTTCAGCAGCATTTCAGACAGGACAACCTaGAGGACATTGCCTTTGTAC +
Preference number: 5 (lower is better)
Translates to: VKQNQSGCVPQDTPFSSISDRTT*RTLPLY
Trigger: GTACAAAGGCAATGTCCTCAAGGTTGTCCTGTCTGA...AATGCTGCTGAAGGGTGTGTCTTGGGGCACACATCCACTTTGATTTTGCTTTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp TCTATATACAAACATGTTTCCGAACCAGAGCGACAGACACACAAACTGTTCACAGTTCCATGCTCTGCTTaGGGATGCTGGTTCTCTTGG +
Preference number: 5 (lower is better)
Translates to: SIYKHVSEPERQTHKLFTVPCSA*GCWFSW
Trigger: CCAAGAGAACCAGCATCCCAAAGCAGAGCATGGAAC...TGTGAACAGTTTGTGTGTCTGTCGCTCTGGTTCGGAAACATGTTTGTATATAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp AAAATCAAAGTGGATGTGTGCCCCAAGACACACCCTTCAGCAGCATTTATCCACGACAAAGAGGAAGGCTaGCCACAAGATTCAATCAAC +
Preference number: 5 (lower is better)
Translates to: KIKVDVCPKTHPSAAFIHDKEEG*PQDSIN
Trigger: GTTGATTGAATCTTGTGGCAAGCCTTCCTCTTTGTC...GTGGATAAATGCTGCTGAAGGGTGTGTCTTGGGGCACACATCCACTTTGATTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp TCTATATACAAACATGTTTCCGAACCAGAGCGACAGACACACAAACTGTTCACAAGAAACTGGCCTTCCTaGCCTGATGGAGTCACTGCT +
Preference number: 5 (lower is better)
Translates to: SIYKHVSEPERQTHKLFTRNWPS*PDGVTA
Trigger: AGCAGTGACTCCATCAGGCAAGGAAGGCCAGTTTCT...TGTGAACAGTTTGTGTGTCTGTCGCTCTGGTTCGGAAACATGTTTGTATATAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp CTGATACACGCCCAATTAAAGCAAAGCTCACGGCTCCGCAGAGCACAGCTAGAAACATTGCCTTTGTACTaGTTGATTACCTTCATCACA +
Preference number: 5 (lower is better)
Translates to: LIHAQLKQSSRLRRAQLETLPLY*LITFIT
Trigger: TGTGATGAAGGTAATCAACAAGTACAAAGGCAATGT...TTCTAGCTGTGCTCTGCGGAGCCGTGAGCTTTGCTTTAATTGGGCGTGTATCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp TCAGATCCCACTGAAAACCTGTGGAGAACATTACATCCTTTCAATCAAAACCAGCTTTTGAGGTCAGCTTaGGTGCCTGACCTATGGAAC +
Preference number: 5 (lower is better)
Translates to: SDPTENLWRTLHPFNQNQLLRSA*VPDLWN
Trigger: GTTCCATAGGTCAGGCACCAAAGCTGACCTCAAAAG...CTGGTTTTGATTGAAAGGATGTAATGTTCTCCACAGGTTTTCAGTGGGATCTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CCA 90 bp GTTATGTTTATGTGTAAATACTCTTTATTCTGCACAGAGGAAACCTaGCCCGTATTTCCCACTGCCTTGCTTTCCATCTGCTTGTCTTCC +
Preference number: 5 (lower is better)
Translates to: VMFMCKYSLFCTEET*PVFPTALLSICLSS
Trigger: GGAAGACAAGCAGATGGAAAGCAAGGCAGTGGGAAATACGGGCCAGGTTTCCTCTGTGCAGAATAAAGAGTATTTACACATAAACATAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp TCTATATACAAACATGTTTCCGAACCAGAGCGACAGACACACAAACTGTTCACAGGACACACTCATTTCTaGAATAGCCTTGGGAGTTGC +
Preference number: 5 (lower is better)
Translates to: SIYKHVSEPERQTHKLFTGHTHF*NSLGSC
Trigger: GCAACTCCCAAGGCTATTCAAGAAATGAGTGTGTCC...TGTGAACAGTTTGTGTGTCTGTCGCTCTGGTTCGGAAACATGTTTGTATATAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp AAAATCAAAGTGGATGTGTGCCCCAAGACACACCCTTCAGCAGCATTTATCCACTGTTCTTCTTCTTGGTaGAGTTCACTTGCTTGGTTT +
Preference number: 5 (lower is better)
Translates to: KIKVDVCPKTHPSAAFIHCSSSW*SSLAWF
Trigger: AAACCAAGCAAGTGAACTCAACCAAGAAGAAGAACA...GTGGATAAATGCTGCTGAAGGGTGTGTCTTGGGGCACACATCCACTTTGATTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS TCA 90 bp AGCTATCTTTCTGCGCAGCAGTTCAATGGACTTTATTTTGGTGGTTaGGCTATTCCATTTAATGGCCTCCGGTACATTTTCAGATCCAGA +
Preference number: 5 (lower is better)
Translates to: SYLSAQQFNGLYFGG*AIPFNGLRYIFRSR
Trigger: TCTGGATCTGAAAATGTACCGGAGGCCATTAAATGGAATAGCTCAACCACCAAAATAAAGTCCATTGAACTGCTGCGCAGAAAGATAGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS GCA 90 bp GGTTTATCTTCTCCAGTTATGTTTATGTGTAAATACTCTTTATTCTaGACAGAGGAAACCTGGCCCGTATTTCCCACTGCCTTGCTTTCC +
Preference number: 5 (lower is better)
Translates to: GLSSPVMFMCKYSLF*TEETWPVFPTALLS
Trigger: GGAAAGCAAGGCAGTGGGAAATACGGGCCAGGTTTCCTCTGTGCAGAATAAAGAGTATTTACACATAAACATAACTGGAGAAGATAAACC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp GTAAAGCAAAATCAAAGTGGATGTGTGCCCCAAGACACACCCTTCAGCAGCATTACATTGCCTTTGTACTaGTTGATTACCTTCATCACA +
Preference number: 5 (lower is better)
Translates to: VKQNQSGCVPQDTPFSSITLPLY*LITFIT
Trigger: TGTGATGAAGGTAATCAACAAGTACAAAGGCAATGT...AATGCTGCTGAAGGGTGTGTCTTGGGGCACACATCCACTTTGATTTTGCTTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CCA 90 bp TGGGTCCTTTGTAGAGAAGCGACACTTATCACAGTAGTATTTGCCTaGCTTGAAGTTCCTAACCTTAAATTTATTTACAGGGCTCGAGAT +
Preference number: 5 (lower is better)
Translates to: WVLCREATLITVVFA*LEVPNLKFIYRARD
Trigger: ATCTCGAGCCCTGTAAATAAATTTAAGGTTAGGAACTTCAAGCCAGGCAAATACTACTGTGATAAGTGTCGCTTCTCTACAAAGGACCCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
ENSMUST00000180214.8
CDS-3UTR CAA 90 bp TCAGATCCCACTGAAAACCTGTGGAGAACATTACATCCTTTCAATCAAAACCAGGAGGAAAGATTCTTGTaGACTGTGGACACCAGAATT +
Preference number: 5 (lower is better)
Translates to: SDPTENLWRTLHPFNQNQEERFL*TVDTRI
Trigger: AATTCTGGTGTCCACAGTCAACAAGAATCTTTCCTC...CTGGTTTTGATTGAAAGGATGTAATGTTCTCCACAGGTTTTCAGTGGGATCTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp TCTATATACAAACATGTTTCCGAACCAGAGCGACAGACACACAAACTGTTCACATGTTCTTCTTCTTGGTaGAGTTCACTTGCTTGGTTT +
Preference number: 5 (lower is better)
Translates to: SIYKHVSEPERQTHKLFTCSSSW*SSLAWF
Trigger: AAACCAAGCAAGTGAACTCAACCAAGAAGAAGAACA...TGTGAACAGTTTGTGTGTCTGTCGCTCTGGTTCGGAAACATGTTTGTATATAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp TCTATATACAAACATGTTTCCGAACCAGAGCGACAGACACACAAACTGTTCACAACAACCTTGAGGACATaGCCTTTGTACTTGTTGATT +
Preference number: 5 (lower is better)
Translates to: SIYKHVSEPERQTHKLFTTTLRT*PLYLLI
Trigger: AATCAACAAGTACAAAGGCAATGTCCTCAAGGTTGT...TGTGAACAGTTTGTGTGTCTGTCGCTCTGGTTCGGAAACATGTTTGTATATAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS-3UTR CAA 90 bp TCTATATACAAACATGTTTCCGAACCAGAGCGACAGACACACAAACTGTTCACATCAATGGACTTTATTTaGGTGGTTGAGCTATTCCAT +
Preference number: 5 (lower is better)
Translates to: SIYKHVSEPERQTHKLFTSMDFI*VVELFH
Trigger: ATGGAATAGCTCAACCACCAAAATAAAGTCCATTGA...TGTGAACAGTTTGTGTGTCTGTCGCTCTGGTTCGGAAACATGTTTGTATATAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS TCA 72 bp CAACTGGGCCAGACAGTTGGTGGGGACCACCAGCTCTaGGGGCGCCATAACGGTCAGCGGCATCCCTGGATG +
Preference number: 6 (lower is better)
Translates to: QLGQTVGGDHQL*GRHNGQRHPWM
Trigger: CATCCAGGGATGCCGCTGACCGTTATGGCGCCCTCAGAGCTGGTGGTCCCCACCAACTGTCTGGCCCAGTTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CCA 72 bp GGTTCTCTTGGGTTCCAGCTTGGCCACAGTTTTGAATaGCCGCTTGGCCCCAGCCCGCTCGTGGACCCTCCT +
Preference number: 6 (lower is better)
Translates to: GSLGFQLGHSFE*PLGPSPLVDPP
Trigger: AGGAGGGTCCACGAGCGGGCTGGGGCCAAGCGGCCATTCAAAACTGTGGCCAAGCTGGAACCCAAGAGAACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CAA 90 bp TGCTTTGGGATGCTGGTTCTCTTGGGTTCCAGCTTGGCCACAGTTTaGAATGGCCGCTTGGCCCCAGCCCGCTCGTGGACCCTCCTCCTG +
Preference number: 6 (lower is better)
Translates to: CFGMLVLLGSSLATV*NGRLAPARSWTLLL
Trigger: CAGGAGGAGGGTCCACGAGCGGGCTGGGGCCAAGCGGCCATTCAAAACTGTGGCCAAGCTGGAACCCAAGAGAACCAGCATCCCAAAGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CAA 72 bp ATGCTGGTTCTCTTGGGTTCCAGCTTGGCCACAGTTTaGAATGGCCGCTTGGCCCCAGCCCGCTCGTGGACC +
Preference number: 6 (lower is better)
Translates to: MLVLLGSSLATV*NGRLAPARSWT
Trigger: GGTCCACGAGCGGGCTGGGGCCAAGCGGCCATTCAAAACTGTGGCCAAGCTGGAACCCAAGAGAACCAGCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CAA 72 bp GCGTGGAGAGAGAACCGAGACAGCTGGTCCGACAACTaGTTTTGGAAGGCAGCCCTGGGACTGGGGCCCTTT +
Preference number: 6 (lower is better)
Translates to: AWRENRDSWSDN*FWKAALGLGPF
Trigger: AAAGGGCCCCAGTCCCAGGGCTGCCTTCCAAAACAAGTTGTCGGACCAGCTGTCTCGGTTCTCTCTCCACGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CAA 90 bp TGCACGGGTTCCTTTGAGGGGGACAGCACTTCCACCTCAACATTCTaGTTCCCCAACAGGCTCACCTCCCTGGGCTCGGACAGGGTCACT +
Preference number: 6 (lower is better)
Translates to: CTGSFEGDSTSTSTF*FPNRLTSLGSDRVT
Trigger: AGTGACCCTGTCCGAGCCCAGGGAGGTGAGCCTGTTGGGGAACAAGAATGTTGAGGTGGAAGTGCTGTCCCCCTCAAAGGAACCCGTGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS GCA 72 bp GCCCTGGGACTGGGGCCCTTTGAGAGTTCCATGCTCTaGTTTGGGATGCTGGTTCTCTTGGGTTCCAGCTTG +
Preference number: 6 (lower is better)
Translates to: ALGLGPFESSML*FGMLVLLGSSL
Trigger: CAAGCTGGAACCCAAGAGAACCAGCATCCCAAAGCAGAGCATGGAACTCTCAAAGGGCCCCAGTCCCAGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS GCA 72 bp AGGCAGCCCTGGGACTGGGGCCCTTTGAGAGTTCCATaGTCTGCTTTGGGATGCTGGTTCTCTTGGGTTCCA +
Preference number: 6 (lower is better)
Translates to: RQPWDWGPLRVP*SALGCWFSWVP
Trigger: TGGAACCCAAGAGAACCAGCATCCCAAAGCAGAGCATGGAACTCTCAAAGGGCCCCAGTCCCAGGGCTGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS GCA 72 bp GGAACCTTTGAAGGCAAAGAGGCAAGCGGCAGGAGCTaGTGGGAGTTACTGCGGGCCCCTCTTCTGTCATCA +
Preference number: 6 (lower is better)
Translates to: GTFEGKEASGRS*WELLRAPLLSS
Trigger: TGATGACAGAAGAGGGGCCCGCAGTAACTCCCAGCAGCTCCTGCCGCTTGCCTCTTTGCCTTCAAAGGTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CCA 72 bp ACCTTTGAAGGCAAAGAGGCAAGCGGCAGGAGCTGCTaGGAGTTACTGCGGGCCCCTCTTCTGTCATCAGCA +
Preference number: 6 (lower is better)
Translates to: TFEGKEASGRSC*ELLRAPLLSSA
Trigger: TGCTGATGACAGAAGAGGGGCCCGCAGTAACTCCCAGCAGCTCCTGCCGCTTGCCTCTTTGCCTTCAAAGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CAA 72 bp CTCTGCTTTGGGATGCTGGTTCTCTTGGGTTCCAGCTaGGCCACAGTTTTGAATGGCCGCTTGGCCCCAGCC +
Preference number: 6 (lower is better)
Translates to: LCFGMLVLLGSS*ATVLNGRLAPA
Trigger: GGCTGGGGCCAAGCGGCCATTCAAAACTGTGGCCAAGCTGGAACCCAAGAGAACCAGCATCCCAAAGCAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CAA 90 bp GGGCCCTTTGAGAGTTCCATGCTCTGCTTTGGGATGCTGGTTCTCTaGGGTTCCAGCTTGGCCACAGTTTTGAATGGCCGCTTGGCCCCA +
Preference number: 6 (lower is better)
Translates to: GPFESSMLCFGMLVL*GSSLATVLNGRLAP
Trigger: TGGGGCCAAGCGGCCATTCAAAACTGTGGCCAAGCTGGAACCCAAGAGAACCAGCATCCCAAAGCAGAGCATGGAACTCTCAAAGGGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CAA 90 bp TCTTTGTTCGCGTGGAGAGAGAACCGAGACAGCTGGTCCGACAACTaGTTTTGGAAGGCAGCCCTGGGACTGGGGCCCTTTGAGAGTTCC +
Preference number: 6 (lower is better)
Translates to: SLFAWRENRDSWSDN*FWKAALGLGPFESS
Trigger: GGAACTCTCAAAGGGCCCCAGTCCCAGGGCTGCCTTCCAAAACAAGTTGTCGGACCAGCTGTCTCGGTTCTCTCTCCACGCGAACAAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CAA 90 bp AACAAGCTGTCTGCTGCCAGTAATACTGTCCTCGTTTGGAGGTTTTaGGAGAGGACCCACAGAAGGGCCAGGGGTAGGGCCAGGGCCAGT +
Preference number: 6 (lower is better)
Translates to: NKLSAASNTVLVWRF*ERTHRRARGRARAS
Trigger: ACTGGCCCTGGCCCTACCCCTGGCCCTTCTGTGGGTCCTCTCCAAAAACCTCCAAACGAGGACAGTATTACTGGCAGCAGACAGCTTGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS TCA 72 bp GCACCTGCTGTTTCAGAAGTCTTGGGCTGCCCAGGCTaGTCCCCAGGCTGTTGGGACCTCGGTTTATCTTCT +
Preference number: 6 (lower is better)
Translates to: APAVSEVLGCPG*SPGCWDLGLSS
Trigger: AGAAGATAAACCGAGGTCCCAACAGCCTGGGGATCAGCCTGGGCAGCCCAAGACTTCTGAAACAGCAGGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CCA 72 bp GGTCCGACAACTTGTTTTGGAAGGCAGCCCTGGGACTaGGGCCCTTTGAGAGTTCCATGCTCTGCTTTGGGA +
Preference number: 6 (lower is better)
Translates to: GPTTCFGRQPWD*GPLRVPCSALG
Trigger: TCCCAAAGCAGAGCATGGAACTCTCAAAGGGCCCCAGTCCCAGGGCTGCCTTCCAAAACAAGTTGTCGGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CCA 72 bp ACAGCTGGTCCGACAACTTGTTTTGGAAGGCAGCCCTaGGACTGGGGCCCTTTGAGAGTTCCATGCTCTGCT +
Preference number: 6 (lower is better)
Translates to: TAGPTTCFGRQP*DWGPLRVPCSA
Trigger: AGCAGAGCATGGAACTCTCAAAGGGCCCCAGTCCCAGGGCTGCCTTCCAAAACAAGTTGTCGGACCAGCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CCA 72 bp GACATGTCTGCCGGTCCACTTCTGCATGTCAAGGGCTaGGAGCCCGAGCCTGTCTGTTTCATAGGGCAGAAT +
Preference number: 6 (lower is better)
Translates to: DMSAGPLLHVKG*EPEPVCFIGQN
Trigger: ATTCTGCCCTATGAAACAGACAGGCTCGGGCTCCCAGCCCTTGACATGCAGAAGTGGACCGGCAGACATGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CAA 72 bp TGGGACTGGGGCCCTTTGAGAGTTCCATGCTCTGCTTaGGGATGCTGGTTCTCTTGGGTTCCAGCTTGGCCA +
Preference number: 6 (lower is better)
Translates to: WDWGPLRVPCSA*GCWFSWVPAWP
Trigger: TGGCCAAGCTGGAACCCAAGAGAACCAGCATCCCAAAGCAGAGCATGGAACTCTCAAAGGGCCCCAGTCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS TCA 72 bp CTTGTTTTGGAAGGCAGCCCTGGGACTGGGGCCCTTTaGGAGTTCCATGCTCTGCTTTGGGATGCTGGTTCT +
Preference number: 6 (lower is better)
Translates to: LVLEGSPGTGAL*EFHALLWDAGS
Trigger: AGAACCAGCATCCCAAAGCAGAGCATGGAACTCTCAAAGGGCCCCAGTCCCAGGGCTGCCTTCCAAAACAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS GCA 72 bp CTGCAGTGGGAACAGATGAACCTGATCTCCTCGTGCTaGAGCGTGTGCTTTCGGTACTGCAGTGGGTCCTTT +
Preference number: 6 (lower is better)
Translates to: LQWEQMNLISSC*SVCFRYCSGSF
Trigger: AAAGGACCCACTGCAGTACCGAAAGCACACGCTGCAGCACGAGGAGATCAGGTTCATCTGTTCCCACTGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CCA 72 bp AGGCTGGTTCCGACGGGGACATTTAATCAACTGATCTaGTTTGGCAGCTATGAGGCGCAGCTGCCTTGCCAC +
Preference number: 6 (lower is better)
Translates to: RLVPTGTFNQLI*FGSYEAQLPCH
Trigger: GTGGCAAGGCAGCTGCGCCTCATAGCTGCCAAACCAGATCAGTTGATTAAATGTCCCCGTCGGAACCAGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS GCA 72 bp CACCATAGTCGCAGTACTCACAGCGATAAGGGAAGATaGCCGTGTGCTTCACCAGATGTCTCTGGAACTCCC +
Preference number: 6 (lower is better)
Translates to: HHSRSTHSDKGR*PCASPDVSGTP
Trigger: GGGAGTTCCAGAGACATCTGGTGAAGCACACGGGCATCTTCCCTTATCGCTGTGAGTACTGCGACTATGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS GCA 72 bp TGGGGCCCTTTGAGAGTTCCATGCTCTGCTTTGGGATaGTGGTTCTCTTGGGTTCCAGCTTGGCCACAGTTT +
Preference number: 6 (lower is better)
Translates to: WGPLRVPCSALG*WFSWVPAWPQF
Trigger: AAACTGTGGCCAAGCTGGAACCCAAGAGAACCAGCATCCCAAAGCAGAGCATGGAACTCTCAAAGGGCCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS GCA 72 bp TGGCCTTCCTTGCCTGATGGAGTCACTGCTTCCTGGTaGCGTGCTGTACACAGGGACCATTTTCTTAGCAGT +
Preference number: 6 (lower is better)
Translates to: WPSLPDGVTASW*RAVHRDHFLSS
Trigger: ACTGCTAAGAAAATGGTCCCTGTGTACAGCACGGCACCAGGAAGCAGTGACTCCATCAGGCAAGGAAGGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CCA 72 bp CCTCAACATTCTTGTTCCCCAACAGGCTCACCTCCCTaGGCTCGGACAGGGTCACTTTGTTGGGAATACACA +
Preference number: 6 (lower is better)
Translates to: PQHSCSPTGSPP*ARTGSLCWEYT
Trigger: TGTGTATTCCCAACAAAGTGACCCTGTCCGAGCCCAGGGAGGTGAGCCTGTTGGGGAACAAGAATGTTGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CCA 72 bp AAGGACCCTCAACACGGCCCCTTTGGGGATCAGCACTaGAGTAGCAACAGGAGTCTTTCTGGTCACTCTGTT +
Preference number: 6 (lower is better)
Translates to: KDPQHGPFGDQH*SSNRSLSGHSV
Trigger: AACAGAGTGACCAGAAAGACTCCTGTTGCTACTCCAGTGCTGATCCCCAAAGGGGCCGTGTTGAGGGTCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CCA 72 bp AACTGGCCTTCCTTGCCTGATGGAGTCACTGCTTCCTaGTGCCGTGCTGTACACAGGGACCATTTTCTTAGC +
Preference number: 6 (lower is better)
Translates to: NWPSLPDGVTAS*CRAVHRDHFLS
Trigger: GCTAAGAAAATGGTCCCTGTGTACAGCACGGCACCAGGAAGCAGTGACTCCATCAGGCAAGGAAGGCCAGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CAA 72 bp GAGAGTTCCATGCTCTGCTTTGGGATGCTGGTTCTCTaGGGTTCCAGCTTGGCCACAGTTTTGAATGGCCGC +
Preference number: 6 (lower is better)
Translates to: ESSMLCFGMLVL*GSSLATVLNGR
Trigger: GCGGCCATTCAAAACTGTGGCCAAGCTGGAACCCAAGAGAACCAGCATCCCAAAGCAGAGCATGGAACTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS TCA 72 bp ATGACAGGCTGGTTCCGACGGGGACATTTAATCAACTaGTCTGGTTTGGCAGCTATGAGGCGCAGCTGCCTT +
Preference number: 6 (lower is better)
Translates to: MTGWFRRGHLIN*SGLAAMRRSCL
Trigger: AAGGCAGCTGCGCCTCATAGCTGCCAAACCAGATCAGTTGATTAAATGTCCCCGTCGGAACCAGCCTGTCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS TCA 72 bp ATCACATTGGTCACTTCGGGGGAGTCAACGTCAGGATaGTTTAGCACAATGACAGGCTGGTTCCGACGGGGA +
Preference number: 6 (lower is better)
Translates to: ITLVTSGESTSG*FSTMTGWFRRG
Trigger: TCCCCGTCGGAACCAGCCTGTCATTGTGCTAAATCATCCTGACGTTGACTCCCCCGAAGTGACCAATGTGAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS GCA 72 bp CTGATCTCCTCGTGCTGCAGCGTGTGCTTTCGGTACTaGAGTGGGTCCTTTGTAGAGAAGCGACACTTATCA +
Preference number: 6 (lower is better)
Translates to: LISSCCSVCFRY*SGSFVEKRHLS
Trigger: TGATAAGTGTCGCTTCTCTACAAAGGACCCACTGCAGTACCGAAAGCACACGCTGCAGCACGAGGAGATCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS GCA 72 bp GAACAGATGAACCTGATCTCCTCGTGCTGCAGCGTGTaGTTTCGGTACTGCAGTGGGTCCTTTGTAGAGAAG +
Preference number: 6 (lower is better)
Translates to: EQMNLISSCCSV*FRYCSGSFVEK
Trigger: CTTCTCTACAAAGGACCCACTGCAGTACCGAAAGCACACGCTGCAGCACGAGGAGATCAGGTTCATCTGTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CCA 72 bp ATTTGCCCTTTGAAGAGAGGACATCCCAGTCTCTGGTaGCCTCTATCAAATGCCTCTGGCCGTGACTCATCC +
Preference number: 6 (lower is better)
Translates to: ICPLKRGHPSLW*PLSNASGRDSS
Trigger: GGATGAGTCACGGCCAGAGGCATTTGATAGAGGCCACCAGAGACTGGGATGTCCTCTCTTCAAAGGGCAAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CAA 72 bp GCAGTGGCACTGCAGATTGTGTCCTCTTTTCTAGATTaGGGCCGAAGAGATGTCTCCAGACCGGGAGACATG +
Preference number: 6 (lower is better)
Translates to: AVALQIVSSFLD*GRRDVSRPGDM
Trigger: CATGTCTCCCGGTCTGGAGACATCTCTTCGGCCCAAATCTAGAAAAGAGGACACAATCTGCAGTGCCACTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CAA 90 bp TTCCCCAACAGGCTCACCTCCCTGGGCTCGGACAGGGTCACTTTGTaGGGAATACACACTACATCTTTTTGGTACTTCTTTAGCTCGGGT +
Preference number: 6 (lower is better)
Translates to: FPNRLTSLGSDRVTL*GIHTTSFWYFFSSG
Trigger: ACCCGAGCTAAAGAAGTACCAAAAAGATGTAGTGTGTATTCCCAACAAAGTGACCCTGTCCGAGCCCAGGGAGGTGAGCCTGTTGGGGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS GCA 72 bp ATTCTGCACAGAGGAAACCTGGCCCGTATTTCCCACTaGCTTGCTTTCCATCTGCTTGTCTTCCAGCTTCCT +
Preference number: 6 (lower is better)
Translates to: ILHRGNLARISH*LAFHLLVFQLP
Trigger: AGGAAGCTGGAAGACAAGCAGATGGAAAGCAAGGCAGTGGGAAATACGGGCCAGGTTTCCTCTGTGCAGAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CCA 72 bp CTTGGCTCTGCCCAGGGCCTTTCCTCAAGTCTTGAGTaGGGATCTTGTGAACACTTTTGCACTGTACACAAG +
Preference number: 6 (lower is better)
Translates to: LGSAQGLSSSLE*GSCEHFCTVHK
Trigger: CTTGTGTACAGTGCAAAAGTGTTCACAAGATCCCCACTCAAGACTTGAGGAAAGGCCCTGGGCAGAGCCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
ENSMUST00000180214.8
CDS CCA 72 bp GAGTTGCTTTTGAGGTCAGCTTTGGTGCCTGACCTATaGAACGTCGCTGAGCACTATTGGCAGACAAAGAGG +
Preference number: 6 (lower is better)
Translates to: ELLLRSALVPDL*NVAEHYWQTKR
Trigger: CCTCTTTGTCTGCCAATAGTGCTCAGCGACGTTCCATAGGTCAGGCACCAAAGCTGACCTCAAAAGCAACTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CAA 72 bp TCCGTTTCATTTCTGACATGCGCAGCACCAGCGTTGTaGTTCACAAAATGCAGCTGGGTAGGCACTGCTCGA +
Preference number: 6 (lower is better)
Translates to: SVSFLTCAAPAL*FTKCSWVGTAR
Trigger: TCGAGCAGTGCCTACCCAGCTGCATTTTGTGAACAACAACGCTGGTGCTGCGCATGTCAGAAATGAAACGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
ENSMUST00000180214.8
CDS CAA 72 bp AGCTCGGGTAATAACATCAGGTTGTGTGTCTTGTCTTaGTTCGCGTGGAGAGAGAACCGAGACAGCTGGTCC +
Preference number: 6 (lower is better)
Translates to: SSGNNIRLCVLS*FAWRENRDSWS
Trigger: GGACCAGCTGTCTCGGTTCTCTCTCCACGCGAACAAAGACAAGACACACAACCTGATGTTATTACCCGAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CAA 72 bp TCTTCAGAAGAGTTAAGGACCCTCAACACGGCCCCTTaGGGGATCAGCACTGGAGTAGCAACAGGAGTCTTT +
Preference number: 6 (lower is better)
Translates to: SSEELRTLNTAP*GISTGVATGVF
Trigger: AAAGACTCCTGTTGCTACTCCAGTGCTGATCCCCAAAGGGGCCGTGTTGAGGGTCCTTAACTCTTCTGAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CAA 90 bp TTGTTCCCCAACAGGCTCACCTCCCTGGGCTCGGACAGGGTCACTTaGTTGGGAATACACACTACATCTTTTTGGTACTTCTTTAGCTCG +
Preference number: 6 (lower is better)
Translates to: LFPNRLTSLGSDRVT*LGIHTTSFWYFFSS
Trigger: CGAGCTAAAGAAGTACCAAAAAGATGTAGTGTGTATTCCCAACAAAGTGACCCTGTCCGAGCCCAGGGAGGTGAGCCTGTTGGGGAACAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CAA 90 bp ATTTTCTTAGCAGTGGCACTGCAGATTGTGTCCTCTTTTCTAGATTaGGGCCGAAGAGATGTCTCCAGACCGGGAGACATGTCTGCCGGT +
Preference number: 6 (lower is better)
Translates to: IFLAVALQIVSSFLD*GRRDVSRPGDMSAG
Trigger: ACCGGCAGACATGTCTCCCGGTCTGGAGACATCTCTTCGGCCCAAATCTAGAAAAGAGGACACAATCTGCAGTGCCACTGCTAAGAAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS TCA 72 bp TTTCAGATCCAGAGCTCAGCGAAAACACGGATGAGATaGTTGGGCCTTCAAACGTGGCACCTGCTGTTTCAG +
Preference number: 6 (lower is better)
Translates to: FQIQSSAKTRMR*LGLQTWHLLFQ
Trigger: CTGAAACAGCAGGTGCCACGTTTGAAGGCCCAATCATCTCATCCGTGTTTTCGCTGAGCTCTGGATCTGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS TCA 72 bp GTAGGGCCAGGGCCAGTAAGGGACACACTCATTTCTTaGATAGCCTTGGGAGTTGCTTTTGAGGTCAGCTTT +
Preference number: 6 (lower is better)
Translates to: VGPGPVRDTLIS*IALGVAFEVSF
Trigger: AAAGCTGACCTCAAAAGCAACTCCCAAGGCTATTCAAGAAATGAGTGTGTCCCTTACTGGCCCTGGCCCTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CCA 72 bp CACTATTTTGTACAGAGGCTGGAGAATGACTTTTTATaGCAGCAGAAGGAAGGGCTCGAGGCGGACACAGAC +
Preference number: 6 (lower is better)
Translates to: HYFVQRLENDFL*QQKEGLEADTD
Trigger: GTCTGTGTCCGCCTCGAGCCCTTCCTTCTGCTGCCATAAAAAGTCATTCTCCAGCCTCTGTACAAAATAGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CAA 72 bp AACAGGCTCACCTCCCTGGGCTCGGACAGGGTCACTTaGTTGGGAATACACACTACATCTTTTTGGTACTTC +
Preference number: 6 (lower is better)
Translates to: NRLTSLGSDRVT*LGIHTTSFWYF
Trigger: GAAGTACCAAAAAGATGTAGTGTGTATTCCCAACAAAGTGACCCTGTCCGAGCCCAGGGAGGTGAGCCTGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CAA 72 bp GCTCACTGTGGCCCCAGGACCATAGGGAACACTATTTaGTACAGAGGCTGGAGAATGACTTTTTATGGCAGC +
Preference number: 6 (lower is better)
Translates to: AHCGPRTIGNTI*YRGWRMTFYGS
Trigger: GCTGCCATAAAAAGTCATTCTCCAGCCTCTGTACAAAATAGTGTTCCCTATGGTCCTGGGGCCACAGTGAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS TCA 72 bp TACATTTTCAGATCCAGAGCTCAGCGAAAACACGGATaGGATGATTGGGCCTTCAAACGTGGCACCTGCTGT +
Preference number: 6 (lower is better)
Translates to: YIFRSRAQRKHG*DDWAFKRGTCC
Trigger: ACAGCAGGTGCCACGTTTGAAGGCCCAATCATCTCATCCGTGTTTTCGCTGAGCTCTGGATCTGAAAATGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS GCA 72 bp AGCGTTGTTGTTCACAAAATGCAGCTGGGTAGGCACTaGTCGAAGGCTGCACTTAAAGCAGACATAAGTGTC +
Preference number: 6 (lower is better)
Translates to: SVVVHKMQLGRH*SKAALKADISV
Trigger: GACACTTATGTCTGCTTTAAGTGCAGCCTTCGAGCAGTGCCTACCCAGCTGCATTTTGTGAACAACAACGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
ENSMUST00000180214.8
CDS CCA 72 bp AATAACATCAGGTTGTGTGTCTTGTCTTTGTTCGCGTaGAGAGAGAACCGAGACAGCTGGTCCGACAACTTG +
Preference number: 6 (lower is better)
Translates to: NNIRLCVLSLFA*RENRDSWSDNL
Trigger: CAAGTTGTCGGACCAGCTGTCTCGGTTCTCTCTCCACGCGAACAAAGACAAGACACACAACCTGATGTTATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CCA 72 bp ATCATTAGCACTGATAAACTGGGGACAGACCTGCTGTaGAACAAGCTGTCTGCTGCCAGTAATACTGTCCTC +
Preference number: 6 (lower is better)
Translates to: IISTDKLGTDLL*NKLSAASNTVL
Trigger: GAGGACAGTATTACTGGCAGCAGACAGCTTGTTCCACAGCAGGTCTGTCCCCAGTTTATCAGTGCTAATGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CCA 72 bp TGTTTCATAGGGCAGAATGGAAGTGTTCCTGCTAACTaGGCTTCGCTGCAAGGTATGCTAACAGGTGTGTCA +
Preference number: 6 (lower is better)
Translates to: CFIGQNGSVPAN*ASLQGMLTGVS
Trigger: TGACACACCTGTTAGCATACCTTGCAGCGAAGCCCAGTTAGCAGGAACACTTCCATTCTGCCCTATGAAACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CAA 72 bp GGGGGACATGGTCAAGGAACTGGGTCCCCCATTCACTaGTGTGGTATAGAGTTGTTCTCCAATATCCTTCAT +
Preference number: 6 (lower is better)
Translates to: GGHGQGTGSPIH*CGIELFSNILH
Trigger: ATGAAGGATATTGGAGAACAACTCTATACCACACAAGTGAATGGGGGACCCAGTTCCTTGACCATGTCCCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
ENSMUST00000180214.8
CDS CAA 90 bp TACTTCTTTAGCTCGGGTAATAACATCAGGTTGTGTGTCTTGTCTTaGTTCGCGTGGAGAGAGAACCGAGACAGCTGGTCCGACAACTTG +
Preference number: 6 (lower is better)
Translates to: YFFSSGNNIRLCVLS*FAWRENRDSWSDNL
Trigger: CAAGTTGTCGGACCAGCTGTCTCGGTTCTCTCTCCACGCGAACAAAGACAAGACACACAACCTGATGTTATTACCCGAGCTAAAGAAGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CAA 90 bp TTTTGGTACTTCTTTAGCTCGGGTAATAACATCAGGTTGTGTGTCTaGTCTTTGTTCGCGTGGAGAGAGAACCGAGACAGCTGGTCCGAC +
Preference number: 6 (lower is better)
Translates to: FWYFFSSGNNIRLCV*SLFAWRENRDSWSD
Trigger: GTCGGACCAGCTGTCTCGGTTCTCTCTCCACGCGAACAAAGACAAGACACACAACCTGATGTTATTACCCGAGCTAAAGAAGTACCAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CAA 90 bp CTAGTCCTCTCAGACAGGACAACCTTGAGGACATTGCCTTTGTACTaGTTGATTACCTTCATCACATTGGTCACTTCGGGGGAGTCAACG +
Preference number: 6 (lower is better)
Translates to: LVLSDRTTLRTLPLY*LITFITLVTSGEST
Trigger: CGTTGACTCCCCCGAAGTGACCAATGTGATGAAGGTAATCAACAAGTACAAAGGCAATGTCCTCAAGGTTGTCCTGTCTGAGAGGACTAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CCA 72 bp ACATGGTCAAGGAACTGGGTCCCCCATTCACTTGTGTaGTATAGAGTTGTTCTCCAATATCCTTCATCTCCC +
Preference number: 6 (lower is better)
Translates to: TWSRNWVPHSLV*YRVVLQYPSSP
Trigger: GGGAGATGAAGGATATTGGAGAACAACTCTATACCACACAAGTGAATGGGGGACCCAGTTCCTTGACCATGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
ENSMUST00000180214.8
CDS CCA 72 bp AAGCAACAGCTGCTTTACTCAAGAAATGGCTCACTGTaGCCCCAGGACCATAGGGAACACTATTTTGTACAG +
Preference number: 6 (lower is better)
Translates to: KQQLLYSRNGSL*PQDHREHYFVQ
Trigger: CTGTACAAAATAGTGTTCCCTATGGTCCTGGGGCCACAGTGAGCCATTTCTTGAGTAAAGCAGCTGTTGCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CAA 72 bp TTCTTTAGCTCGGGTAATAACATCAGGTTGTGTGTCTaGTCTTTGTTCGCGTGGAGAGAGAACCGAGACAGC +
Preference number: 6 (lower is better)
Translates to: FFSSGNNIRLCV*SLFAWRENRDS
Trigger: GCTGTCTCGGTTCTCTCTCCACGCGAACAAAGACAAGACACACAACCTGATGTTATTACCCGAGCTAAAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS TCA 72 bp TTTTCTTCCAACGGAAACAGTTTAAGCACAAGCTGCTaGGCACCATTGACAACCTTCACGTCCATCAACTGG +
Preference number: 6 (lower is better)
Translates to: FSSNGNSLSTSC*APLTTFTSINW
Trigger: CCAGTTGATGGACGTGAAGGTTGTCAATGGTGCTCAGCAGCTTGTGCTTAAACTGTTTCCGTTGGAAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS TCA 72 bp GAGGCGGACACAGACTGTGAGATTTCTGTAACTCCTTaGTTGTATCGGAACCGAGGAAAGATTCTTGTTGAC +
Preference number: 6 (lower is better)
Translates to: EADTDCEISVTP*LYRNRGKILVD
Trigger: GTCAACAAGAATCTTTCCTCGGTTCCGATACAATCAAGGAGTTACAGAAATCTCACAGTCTGTGTCCGCCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CCA 72 bp ATGTGTAAATACTCTTTATTCTGCACAGAGGAAACCTaGCCCGTATTTCCCACTGCCTTGCTTTCCATCTGC +
Preference number: 6 (lower is better)
Translates to: MCKYSLFCTEET*PVFPTALLSIC
Trigger: GCAGATGGAAAGCAAGGCAGTGGGAAATACGGGCCAGGTTTCCTCTGTGCAGAATAAAGAGTATTTACACAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CAA 72 bp GGAACTGGGTCCCCCATTCACTTGTGTGGTATAGAGTaGTTCTCCAATATCCTTCATCTCCCTTATCTGCAT +
Preference number: 6 (lower is better)
Translates to: GTGSPIHLCGIE*FSNILHLPYLH
Trigger: ATGCAGATAAGGGAGATGAAGGATATTGGAGAACAACTCTATACCACACAAGTGAATGGGGGACCCAGTTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
ENSMUST00000180214.8
CDS CAA 72 bp TCAGACAGGACAACCTTGAGGACATTGCCTTTGTACTaGTTGATTACCTTCATCACATTGGTCACTTCGGGG +
Preference number: 6 (lower is better)
Translates to: SDRTTLRTLPLY*LITFITLVTSG
Trigger: CCCCGAAGTGACCAATGTGATGAAGGTAATCAACAAGTACAAAGGCAATGTCCTCAAGGTTGTCCTGTCTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CAA 90 bp ACTACATCTTTTTGGTACTTCTTTAGCTCGGGTAATAACATCAGGTaGTGTGTCTTGTCTTTGTTCGCGTGGAGAGAGAACCGAGACAGC +
Preference number: 6 (lower is better)
Translates to: TTSFWYFFSSGNNIR*CVLSLFAWRENRDS
Trigger: GCTGTCTCGGTTCTCTCTCCACGCGAACAAAGACAAGACACACAACCTGATGTTATTACCCGAGCTAAAGAAGTACCAAAAAGATGTAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS TCA 72 bp GACAAAGAGGAAGGCTTGCCACAAGATTCAATCAACTaGGCTATCTTTCTGCGCAGCAGTTCAATGGACTTT +
Preference number: 6 (lower is better)
Translates to: DKEEGLPQDSIN*AIFLRSSSMDF
Trigger: AAAGTCCATTGAACTGCTGCGCAGAAAGATAGCTCAGTTGATTGAATCTTGTGGCAAGCCTTCCTCTTTGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CAA 72 bp GCTATCTTTCTGCGCAGCAGTTCAATGGACTTTATTTaGGTGGTTGAGCTATTCCATTTAATGGCCTCCGGT +
Preference number: 6 (lower is better)
Translates to: AIFLRSSSMDFI*VVELFHLMASG
Trigger: ACCGGAGGCCATTAAATGGAATAGCTCAACCACCAAAATAAAGTCCATTGAACTGCTGCGCAGAAAGATAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CAA 72 bp GTCCTCTCAGACAGGACAACCTTGAGGACATTGCCTTaGTACTTGTTGATTACCTTCATCACATTGGTCACT +
Preference number: 6 (lower is better)
Translates to: VLSDRTTLRTLP*YLLITFITLVT
Trigger: AGTGACCAATGTGATGAAGGTAATCAACAAGTACAAAGGCAATGTCCTCAAGGTTGTCCTGTCTGAGAGGAC
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CAA 72 bp CACCTAGTCCTCTCAGACAGGACAACCTTGAGGACATaGCCTTTGTACTTGTTGATTACCTTCATCACATTG +
Preference number: 6 (lower is better)
Translates to: HLVLSDRTTLRT*PLYLLITFITL
Trigger: CAATGTGATGAAGGTAATCAACAAGTACAAAGGCAATGTCCTCAAGGTTGTCCTGTCTGAGAGGACTAGGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS TCA 72 bp TCTGCGCAGCAGTTCAATGGACTTTATTTTGGTGGTTaGGCTATTCCATTTAATGGCCTCCGGTACATTTTC +
Preference number: 6 (lower is better)
Translates to: SAQQFNGLYFGG*AIPFNGLRYIF
Trigger: GAAAATGTACCGGAGGCCATTAAATGGAATAGCTCAACCACCAAAATAAAGTCCATTGAACTGCTGCGCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS GCA 72 bp GCTTGCCACAAGATTCAATCAACTGAGCTATCTTTCTaGGCAGCAGTTCAATGGACTTTATTTTGGTGGTTG +
Preference number: 6 (lower is better)
Translates to: ACHKIQSTELSF*AAVQWTLFWWL
Trigger: CAACCACCAAAATAAAGTCCATTGAACTGCTGCGCAGAAAGATAGCTCAGTTGATTGAATCTTGTGGCAAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CAA 72 bp TTTTGGTACTTCTTTAGCTCGGGTAATAACATCAGGTaGTGTGTCTTGTCTTTGTTCGCGTGGAGAGAGAAC +
Preference number: 6 (lower is better)
Translates to: FWYFFSSGNNIR*CVLSLFAWREN
Trigger: GTTCTCTCTCCACGCGAACAAAGACAAGACACACAACCTGATGTTATTACCCGAGCTAAAGAAGTACCAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CAA 90 bp GGATTGGCCTGCATCTTGTTCTTCTTCTTGGTTGAGTTCACTTGCTaGGTTTTATTCTTGCTTACAGTTAGGTTTCTAGAAACTGGCCTT +
Preference number: 6 (lower is better)
Translates to: GLACILFFFLVEFTC*VLFLLTVRFLETGL
Trigger: AAGGCCAGTTTCTAGAAACCTAACTGTAAGCAAGAATAAAACCAAGCAAGTGAACTCAACCAAGAAGAAGAACAAGATGCAGGCCAATCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CAA 90 bp ATCTTGTTCTTCTTCTTGGTTGAGTTCACTTGCTTGGTTTTATTCTaGCTTACAGTTAGGTTTCTAGAAACTGGCCTTCCTTGCCTGATG +
Preference number: 6 (lower is better)
Translates to: ILFFFLVEFTCLVLF*LTVRFLETGLPCLM
Trigger: CATCAGGCAAGGAAGGCCAGTTTCTAGAAACCTAACTGTAAGCAAGAATAAAACCAAGCAAGTGAACTCAACCAAGAAGAAGAACAAGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS TCA 72 bp AAGATTCTTGTTGACTGTGGACACCAGAATTCGGCATaGAAAAATTGCAAGACTTCACCCACTTCACATTTT +
Preference number: 6 (lower is better)
Translates to: KILVDCGHQNSA*KNCKTSPTSHF
Trigger: AAAATGTGAAGTGGGTGAAGTCTTGCAATTTTTTCATGCCGAATTCTGGTGTCCACAGTCAACAAGAATCTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
CDS CCA 72 bp TGTAGAGAAGCGACACTTATCACAGTAGTATTTGCCTaGCTTGAAGTTCCTAACCTTAAATTTATTTACAGG +
Preference number: 6 (lower is better)
Translates to: CREATLITVVFA*LEVPNLKFIYR
Trigger: CCTGTAAATAAATTTAAGGTTAGGAACTTCAAGCCAGGCAAATACTACTGTGATAAGTGTCGCTTCTCTACA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057258.11
ENSMUST00000179555.8
ENSMUST00000180214.8