Pregenerated sensors for ZFP459 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000055560Ensembl transcript IDs: ENSMUST00000056470.10, ENSMUST00000223644.2, ENSMUST00000224113.2
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTaGACCACCACCACCCAGCTTCTGGTGACTTTCTTAGCATTTGTG | + |
|
Preference number: 1 (lower is better) Translates to: RNPPASASQVLGLKV*TTTTQLLVTFLAFV Trigger: CACAAATGCTAAGAAAGTCACCAGAAGCTGGGTGGTGGTGGTGCACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056470.10 |
||
| 3UTR TCA 90 bp | AGTCAGTCAATTGGGGTTCCTATTGCTTCTAAGAAACACTACTACTaGAGCAAGTTGGGCAGGAAAGGGTTTGAGTTACACCAACACATT | + |
|
Preference number: 1 (lower is better) Translates to: SQSIGVPIASKKHYY*SKLGRKGFELHQHI Trigger: AATGTGTTGGTGTAACTCAAACCCTTTCCTGCCCAACTTGCTTCAGTAGTAGTGTTTCTTAGAAGCAATAGGAACCCCAATTGACTGACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056470.10 |
||
| 3UTR GCA 90 bp | CACCATATTCCACACACTCATGGAGTTTGTAGTCAGAATGAGTGTTaGCTTAGTCAGTCAATTGGGGTTCCTATTGCTTCTAAGAAACAC | + |
|
Preference number: 1 (lower is better) Translates to: HHIPHTHGVCSQNEC*LSQSIGVPIASKKH Trigger: GTGTTTCTTAGAAGCAATAGGAACCCCAATTGACTGACTAAGGCAACACTCATTCTGACTACAAACTCCATGAGTGTGTGGAATATGGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056470.10 |
||
| 3UTR TCA 90 bp | GTTGAAGTTCTGTCCTTTCAGATAGCTCTAGTTTGCCTGTCAAGCTaGCATAAAACTGGGCAGCACAGATTTGTTTTAAGAGTGGAAGAA | + |
|
Preference number: 1 (lower is better) Translates to: VEVLSFQIALVCLSS*HKTGQHRFVLRVEE Trigger: TTCTTCCACTCTTAAAACAAATCTGTGCTGCCCAGTTTTATGTCAGCTTGACAGGCAAACTAGAGCTATCTGAAAGGACAGAACTTCAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056470.10 |
||
| 3UTR TCA 90 bp | CCAGGCACCCAAAGGACCAAGTTATACAACAGAGCAACAGTTTCATaGAATATATATAGTTACAGAGGGATGAAACTCATCCATCCATGC | + |
|
Preference number: 1 (lower is better) Translates to: PGTQRTKLYNRATVS*NIYSYRGMKLIHPC Trigger: GCATGGATGGATGAGTTTCATCCCTCTGTAACTATATATATTTCATGAAACTGTTGCTCTGTTGTATAACTTGGTCCTTTGGGTGCCTGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056470.10 |
||
| 3UTR CAA 90 bp | AAACTCATCCATCCATGCAAGATTCAAGCACATTGGTTGAACACATaGGTGGGGAGGTTACATCAAAGAGAAGTCTCTACTCCTCTGGTG | + |
|
Preference number: 2 (lower is better) Translates to: KLIHPCKIQAHWLNT*VGRLHQREVSTPLV Trigger: CACCAGAGGAGTAGAGACTTCTCTTTGATGTAACCTCCCCACCAATGTGTTCAACCAATGTGCTTGAATCTTGCATGGATGGATGAGTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056470.10 |
||
| 3UTR-3UTR CCA 90 bp | GAAACTCATCCATCCATGCAAGATTCAAGCACATTGGTTGAACACATTGGTGGGACTACTGAAGCAAGTTaGGCAGGAAAGGGTTTGAGT | + |
|
Preference number: 2 (lower is better) Translates to: ETHPSMQDSSTLVEHIGGTTEAS*AGKGLS Trigger: ACTCAAACCCTTTCCTGCCCAACTTGCTTCAGTAGT...CCCACCAATGTGTTCAACCAATGTGCTTGAATCTTGCATGGATGGATGAGTTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056470.10 |
||
| 3UTR CAA 90 bp | GTAGTCAGAATGAGTGTTGCCTTAGTCAGTCAATTGGGGTTCCTATaGCTTCTAAGAAACACTACTACTGAAGCAAGTTGGGCAGGAAAG | + |
|
Preference number: 2 (lower is better) Translates to: VVRMSVALVSQLGFL*LLRNTTTEASWAGK Trigger: CTTTCCTGCCCAACTTGCTTCAGTAGTAGTGTTTCTTAGAAGCAATAGGAACCCCAATTGACTGACTAAGGCAACACTCATTCTGACTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056470.10 |
||
| 3UTR-3UTR CCA 90 bp | AGACTTAGTCTATTATCATCAAGGCAGGAGCATGGCAGCATCCAGGCAGACATGCGAAGATTTGCAGAATaGGAAAACCTTTTGTCACAT | + |
|
Preference number: 2 (lower is better) Translates to: RLSLLSSRQEHGSIQADMRRFAE*ENLLSH Trigger: ATGTGACAAAAGGTTTTCCCATTCTGCAAATCTTCG...CATGTCTGCCTGGATGCTGCCATGCTCCTGCCTTGATGATAATAGACTAAGTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056470.10 |
||
| 3UTR-3UTR TCA 90 bp | GAAACTCATCCATCCATGCAAGATTCAAGCACATTGGTTGAACACATTGGTGGGGATTTCTCTCTTGCATaGGTGTTCTTGTGTTTCGAA | + |
|
Preference number: 2 (lower is better) Translates to: ETHPSMQDSSTLVEHIGGDFSLA*VFLCFE Trigger: TTCGAAACACAAGAACACTCATGCAAGAGAGAAATC...CCCACCAATGTGTTCAACCAATGTGCTTGAATCTTGCATGGATGGATGAGTTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056470.10 |
||
| 3UTR-3UTR TCA 90 bp | GTTAAAGCTGGATCTTATGCAAACATTTACTCAGTTGAAGTTCTGTCCTTTCAGTTGTACATCTTCATCTaGAGGCTGCTACAAGACTGG | + |
|
Preference number: 2 (lower is better) Translates to: VKAGSYANIYSVEVLSFQLYIFI*RLLQDW Trigger: CCAGTCTTGTAGCAGCCTTCAGATGAAGATGTACAA...CTGAAAGGACAGAACTTCAACTGAGTAAATGTTTGCATAAGATCCAGCTTTAAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056470.10 |
||
| 3UTR-3UTR GCA 90 bp | GCTGGATCTTATGCAAACATTTACTCAGTTGAAGTTCTGTCCTTTCAGATAGCTAATTTGAAAAAGATCTaGCACAGTCTTGGCAGGTGT | + |
|
Preference number: 2 (lower is better) Translates to: AGSYANIYSVEVLSFQIANLKKI*HSLGRC Trigger: ACACCTGCCAAGACTGTGGCAGATCTTTTTCAAATT...AGCTATCTGAAAGGACAGAACTTCAACTGAGTAAATGTTTGCATAAGATCCAGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000056470.10 |
||
| 3UTR-3UTR GCA 90 bp | AAAACAGTTAAAGCTGGATCTTATGCAAACATTTACTCAGTTGAAGTTCTGTCCAAAGGCTTGGTGACATaGTTAACACTTGCAAGGTCT | + |
|
Preference number: 2 (lower is better) Translates to: KTVKAGSYANIYSVEVLSKGLVT*LTLARS Trigger: AGACCTTGCAAGTGTTAAGCATGTCACCAAGCCTTT...GGACAGAACTTCAACTGAGTAAATGTTTGCATAAGATCCAGCTTTAACTGTTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056470.10 |
||
| 3UTR-3UTR CAA 90 bp | GGAAGCCAGGACAAGAACTCACATAGGGGCCGGGCGTGGTGGCACACGCTTTTAACCCCCACACCCACATaGACACACTTACTCCAACAA | + |
|
Preference number: 3 (lower is better) Translates to: GSQDKNSHRGRAWWHTLLTPTPT*THLLQQ Trigger: TTGTTGGAGTAAGTGTGTCAATGTGGGTGTGGGGGT...TAAAAGCGTGTGCCACCACGCCCGGCCCCTATGTGAGTTCTTGTCCTGGCTTCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000056470.10 |
||
| 3UTR GCA 72 bp | CCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTaGACCACCACCACCCAGCTTCTGGTGACTTTCTTA | + |
|
Preference number: 3 (lower is better) Translates to: PASASQVLGLKV*TTTTQLLVTFL Trigger: TAAGAAAGTCACCAGAAGCTGGGTGGTGGTGGTGCACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056470.10 |
||
| 3UTR GCA 72 bp | GAGGAGGGCATGGAGGGATGCTTGCTCCCTATGGACTaGTCAATCTGCTTTCTTATACAATCCAGGCCTCCC | + |
|
Preference number: 3 (lower is better) Translates to: EEGMEGCLLPMD*SICFLIQSRPP Trigger: GGGAGGCCTGGATTGTATAAGAAAGCAGATTGAGCAGTCCATAGGGAGCAAGCATCCCTCCATGCCCTCCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056470.10 |
||
| 3UTR GCA 72 bp | ATGGAGGGATGCTTGCTCCCTATGGACTGCTCAATCTaGTTTCTTATACAATCCAGGCCTCCCAGCTCAGGA | + |
|
Preference number: 3 (lower is better) Translates to: MEGCLLPMDCSI*FLIQSRPPSSG Trigger: TCCTGAGCTGGGAGGCCTGGATTGTATAAGAAAGCAGATTGAGCAGTCCATAGGGAGCAAGCATCCCTCCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056470.10 |
||
| 3UTR-3UTR CAA 90 bp | GGAAGCCAGGACAAGAACTCACATAGGGGCCGGGCGTGGTGGCACACGCTTTTACGATATTTAAAAGGCTaGGTGACATGCTTAACACTT | + |
|
Preference number: 3 (lower is better) Translates to: GSQDKNSHRGRAWWHTLLRYLKG*VTCLTL Trigger: AAGTGTTAAGCATGTCACCAAGCCTTTTAAATATCG...TAAAAGCGTGTGCCACCACGCCCGGCCCCTATGTGAGTTCTTGTCCTGGCTTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000056470.10 |
||
| 3UTR TCA 72 bp | ACACACCCAGGGAATGCGTTATTTAAAGAGTATGGGTaGCACCGCCACTGGTTAAAACAACAGAAACTGTAC | + |
|
Preference number: 3 (lower is better) Translates to: THPGNALFKEYG*HRHWLKQQKLY Trigger: GTACAGTTTCTGTTGTTTTAACCAGTGGCGGTGTCACCCATACTCTTTAAATAACGCATTCCCTGGGTGTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056470.10 |
||
| 3UTR GCA 72 bp | CCACACACTCATGGAGTTTGTAGTCAGAATGAGTGTTaGCTTAGTCAGTCAATTGGGGTTCCTATTGCTTCT | + |
|
Preference number: 3 (lower is better) Translates to: PHTHGVCSQNEC*LSQSIGVPIAS Trigger: AGAAGCAATAGGAACCCCAATTGACTGACTAAGGCAACACTCATTCTGACTACAAACTCCATGAGTGTGTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056470.10 |
||
| 3UTR TCA 72 bp | CTGTCCTTTCAGATAGCTCTAGTTTGCCTGTCAAGCTaGCATAAAACTGGGCAGCACAGATTTGTTTTAAGA | + |
|
Preference number: 3 (lower is better) Translates to: LSFQIALVCLSS*HKTGQHRFVLR Trigger: TCTTAAAACAAATCTGTGCTGCCCAGTTTTATGTCAGCTTGACAGGCAAACTAGAGCTATCTGAAAGGACAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056470.10 |
||
| 3UTR CCA 72 bp | CTATTGCTTCTAAGAAACACTACTACTGAAGCAAGTTaGGCAGGAAAGGGTTTGAGTTACACCAACACATTG | + |
|
Preference number: 3 (lower is better) Translates to: LLLLRNTTTEAS*AGKGLSYTNTL Trigger: CAATGTGTTGGTGTAACTCAAACCCTTTCCTGCCCAACTTGCTTCAGTAGTAGTGTTTCTTAGAAGCAATAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056470.10 |
||
| 3UTR CCA 72 bp | ATGAAACTCATCCATCCATGCAAGATTCAAGCACATTaGTTGAACACATTGGTGGGGAGGTTACATCAAAGA | + |
|
Preference number: 3 (lower is better) Translates to: MKLIHPCKIQAH*LNTLVGRLHQR Trigger: TCTTTGATGTAACCTCCCCACCAATGTGTTCAACCAATGTGCTTGAATCTTGCATGGATGGATGAGTTTCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056470.10 |
||
| 3UTR-3UTR CAA 90 bp | GAAACTCATCCATCCATGCAAGATTCAAGCACATTGGTTGAACACATTGGTGGGCAAACATTTACTCAGTaGAAGTTCTGTCCTTTCAGA | + |
|
Preference number: 3 (lower is better) Translates to: ETHPSMQDSSTLVEHIGGQTFTQ*KFCPFR Trigger: TCTGAAAGGACAGAACTTCAACTGAGTAAATGTTTG...CCCACCAATGTGTTCAACCAATGTGCTTGAATCTTGCATGGATGGATGAGTTTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056470.10 |
||
| 3UTR TCA 72 bp | CTCTCTTGCATGAGTGTTCTTGTGTTTCGAAAGGGTTaGACGATATTTAAAAGGCTTGGTGACATGCTTAAC | + |
|
Preference number: 3 (lower is better) Translates to: LSCMSVLVFRKG*TIFKRLGDMLN Trigger: GTTAAGCATGTCACCAAGCCTTTTAAATATCGTTCAACCCTTTCGAAACACAAGAACACTCATGCAAGAGAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056470.10 |
||
| 3UTR TCA 72 bp | ACACTACTACTGAAGCAAGTTGGGCAGGAAAGGGTTTaGGTTACACCAACACATTGTAGTCCATTATTAAAG | + |
|
Preference number: 3 (lower is better) Translates to: TLLLKQVGQERV*VTPTHCSPLLK Trigger: CTTTAATAATGGACTACAATGTGTTGGTGTAACTCAAACCCTTTCCTGCCCAACTTGCTTCAGTAGTAGTGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056470.10 |
||
| 3UTR CCA 72 bp | TTCATAAAGTCCAAGTTGGTGAGGAATGTGAGTTTATaGAGCTTCTTACACACCCAGGGAATGCGTTATTTA | + |
|
Preference number: 3 (lower is better) Translates to: FIKSKLVRNVSL*SFLHTQGMRYL Trigger: TAAATAACGCATTCCCTGGGTGTGTAAGAAGCTCCATAAACTCACATTCCTCACCAACTTGGACTTTATGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056470.10 |
||
| 3UTR-3UTR CAA 90 bp | GTTAAAGCTGGATCTTATGCAAACATTTACTCAGTTGAAGTTCTGTCCTTTCAGGATGGTTCCGAAGATTaGCAGAATGGGAAAACCTTT | + |
|
Preference number: 3 (lower is better) Translates to: VKAGSYANIYSVEVLSFQDGSED*QNGKTF Trigger: AAAGGTTTTCCCATTCTGCAAATCTTCGGAACCATC...CTGAAAGGACAGAACTTCAACTGAGTAAATGTTTGCATAAGATCCAGCTTTAAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056470.10 |
||
| 3UTR TCA 72 bp | CAACAGTTTCATGAAATATATATAGTTACAGAGGGATaGAACTCATCCATCCATGCAAGATTCAAGCACATT | + |
|
Preference number: 3 (lower is better) Translates to: QQFHEIYIVTEG*NSSIHARFKHI Trigger: AATGTGCTTGAATCTTGCATGGATGGATGAGTTTCATCCCTCTGTAACTATATATATTTCATGAAACTGTTG 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056470.10 |
||
| 3UTR TCA 72 bp | CAAAGGACCAAGTTATACAACAGAGCAACAGTTTCATaGAATATATATAGTTACAGAGGGATGAAACTCATC | + |
|
Preference number: 3 (lower is better) Translates to: QRTKLYNRATVS*NIYSYRGMKLI Trigger: GATGAGTTTCATCCCTCTGTAACTATATATATTTCATGAAACTGTTGCTCTGTTGTATAACTTGGTCCTTTG 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056470.10 |
||
| CDS-3UTR TCA 90 bp | GTTAAAGCTGGATCTTATGCAAACATTTACTCAGTTGAAGTTCTGTCCTTTCAGCTGTACAGATGCCACTaGGCAGGCTCCAGGCATTCC | + |
|
Preference number: 4 (lower is better) Translates to: VKAGSYANIYSVEVLSFQLYRCH*AGSRHS Trigger: GGAATGCCTGGAGCCTGCTCAGTGGCATCTGTACAG...CTGAAAGGACAGAACTTCAACTGAGTAAATGTTTGCATAAGATCCAGCTTTAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056470.10 |
||
| CDS-3UTR GCA 90 bp | AGACTTAGTCTATTATCATCAAGGCAGGAGCATGGCAGCATCCAGGCAGACATGGAACACTGCTTTTACTaGTTGTCTCTCTTCACCAGT | + |
|
Preference number: 4 (lower is better) Translates to: RLSLLSSRQEHGSIQADMEHCFY*LSLFTS Trigger: ACTGGTGAAGAGAGACAAGCAGTAAAAGCAGTGTTC...CATGTCTGCCTGGATGCTGCCATGCTCCTGCCTTGATGATAATAGACTAAGTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056470.10 |
||
| CDS-3UTR CCA 90 bp | AGACTTAGTCTATTATCATCAAGGCAGGAGCATGGCAGCATCCAGGCAGACATGATTGGGTGTTATTCCTaGGAACACTGCTTTTACTGC | + |
|
Preference number: 4 (lower is better) Translates to: RLSLLSSRQEHGSIQADMIGCYS*EHCFYC Trigger: GCAGTAAAAGCAGTGTTCCCAGGAATAACACCCAAT...CATGTCTGCCTGGATGCTGCCATGCTCCTGCCTTGATGATAATAGACTAAGTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056470.10 |
||
| 3UTR CAA 72 bp | CATCCATGCAAGATTCAAGCACATTGGTTGAACACATaGGTGGGGAGGTTACATCAAAGAGAAGTCTCTACT | + |
|
Preference number: 4 (lower is better) Translates to: HPCKIQAHWLNT*VGRLHQREVST Trigger: AGTAGAGACTTCTCTTTGATGTAACCTCCCCACCAATGTGTTCAACCAATGTGCTTGAATCTTGCATGGATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056470.10 |
||
| 3UTR CAA 72 bp | GATGAAACTCATCCATCCATGCAAGATTCAAGCACATaGGTTGAACACATTGGTGGGGAGGTTACATCAAAG | + |
|
Preference number: 4 (lower is better) Translates to: DETHPSMQDSST*VEHIGGEVTSK Trigger: CTTTGATGTAACCTCCCCACCAATGTGTTCAACCAATGTGCTTGAATCTTGCATGGATGGATGAGTTTCATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056470.10 |
||
| 3UTR CAA 72 bp | ATGAGTGTTGCCTTAGTCAGTCAATTGGGGTTCCTATaGCTTCTAAGAAACACTACTACTGAAGCAAGTTGG | + |
|
Preference number: 4 (lower is better) Translates to: MSVALVSQLGFL*LLRNTTTEASW Trigger: CCAACTTGCTTCAGTAGTAGTGTTTCTTAGAAGCAATAGGAACCCCAATTGACTGACTAAGGCAACACTCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056470.10 |
||
| CDS-3UTR GCA 90 bp | AAAACAGTTAAAGCTGGATCTTATGCAAACATTTACTCAGTTGAAGTTCTGTCCGTAGAGCCTTGTCTTTaGTCCAGAAATGTCACCAGC | + |
|
Preference number: 4 (lower is better) Translates to: KTVKAGSYANIYSVEVLSVEPCL*SRNVTS Trigger: GCTGGTGACATTTCTGGAGCAAAGACAAGGCTCTAC...GGACAGAACTTCAACTGAGTAAATGTTTGCATAAGATCCAGCTTTAACTGTTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056470.10 |
||
| CDS GCA 90 bp | ACTGCTTTTACTGCTTGTCTCTCTTCACCAGTAGAGCCTTGTCTTTaGTCCAGAAATGTCACCAGCTGTGGCTTAGAGTCAGCAAGCCCC | + |
|
Preference number: 5 (lower is better) Translates to: TAFTACLSSPVEPCL*SRNVTSCGLESASP Trigger: GGGGCTTGCTGACTCTAAGCCACAGCTGGTGACATTTCTGGAGCAAAGACAAGGCTCTACTGGTGAAGAGAGACAAGCAGTAAAAGCAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000056470.10 ENSMUST00000223644.2 ENSMUST00000224113.2 |
||
| CDS-3UTR CAA 90 bp | AGACTTAGTCTATTATCATCAAGGCAGGAGCATGGCAGCATCCAGGCAGACATGTTCACCAGTAGAGCCTaGTCTTTGCTCCAGAAATGT | + |
|
Preference number: 5 (lower is better) Translates to: RLSLLSSRQEHGSIQADMFTSRA*SLLQKC Trigger: ACATTTCTGGAGCAAAGACAAGGCTCTACTGGTGAA...CATGTCTGCCTGGATGCTGCCATGCTCCTGCCTTGATGATAATAGACTAAGTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056470.10 |
||
| CDS-3UTR CAA 90 bp | GAAACTCATCCATCCATGCAAGATTCAAGCACATTGGTTGAACACATTGGTGGGAGTAGAGCCTTGTCTTaGCTCCAGAAATGTCACCAG | + |
|
Preference number: 5 (lower is better) Translates to: ETHPSMQDSSTLVEHIGGSRALS*LQKCHQ Trigger: CTGGTGACATTTCTGGAGCAAAGACAAGGCTCTACT...CCCACCAATGTGTTCAACCAATGTGCTTGAATCTTGCATGGATGGATGAGTTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056470.10 |
||
| CDS GCA 90 bp | ATGGTTAGGATCATTGGGTGTTATTCCTGGGAACACTGCTTTTACTaGTTGTCTCTCTTCACCAGTAGAGCCTTGTCTTTGCTCCAGAAA | + |
|
Preference number: 5 (lower is better) Translates to: MVRIIGCYSWEHCFY*LSLFTSRALSLLQK Trigger: TTTCTGGAGCAAAGACAAGGCTCTACTGGTGAAGAGAGACAAGCAGTAAAAGCAGTGTTCCCAGGAATAACACCCAATGATCCTAACCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000056470.10 ENSMUST00000223644.2 ENSMUST00000224113.2 |
||
| CDS GCA 72 bp | ACTGCTTGTCTCTCTTCACCAGTAGAGCCTTGTCTTTaGTCCAGAAATGTCACCAGCTGTGGCTTAGAGTCA | + |
|
Preference number: 6 (lower is better) Translates to: TACLSSPVEPCL*SRNVTSCGLES Trigger: TGACTCTAAGCCACAGCTGGTGACATTTCTGGAGCAAAGACAAGGCTCTACTGGTGAAGAGAGACAAGCAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000056470.10 ENSMUST00000223644.2 ENSMUST00000224113.2 |
||
| CDS CAA 72 bp | TACTGCTTGTCTCTCTTCACCAGTAGAGCCTTGTCTTaGCTCCAGAAATGTCACCAGCTGTGGCTTAGAGTC | + |
|
Preference number: 6 (lower is better) Translates to: YCLSLFTSRALS*LQKCHQLWLRV Trigger: GACTCTAAGCCACAGCTGGTGACATTTCTGGAGCAAAGACAAGGCTCTACTGGTGAAGAGAGACAAGCAGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000056470.10 ENSMUST00000223644.2 ENSMUST00000224113.2 |
||
| CDS CAA 72 bp | TGCTTTTACTGCTTGTCTCTCTTCACCAGTAGAGCCTaGTCTTTGCTCCAGAAATGTCACCAGCTGTGGCTT | + |
|
Preference number: 6 (lower is better) Translates to: CFYCLSLFTSRA*SLLQKCHQLWL Trigger: AAGCCACAGCTGGTGACATTTCTGGAGCAAAGACAAGGCTCTACTGGTGAAGAGAGACAAGCAGTAAAAGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000056470.10 ENSMUST00000223644.2 ENSMUST00000224113.2 |
||
| CDS CAA 72 bp | ATTGGGTGTTATTCCTGGGAACACTGCTTTTACTGCTaGTCTCTCTTCACCAGTAGAGCCTTGTCTTTGCTC | + |
|
Preference number: 6 (lower is better) Translates to: IGCYSWEHCFYC*SLFTSRALSLL Trigger: GAGCAAAGACAAGGCTCTACTGGTGAAGAGAGACAAGCAGTAAAAGCAGTGTTCCCAGGAATAACACCCAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000056470.10 ENSMUST00000223644.2 ENSMUST00000224113.2 |
||
| CDS GCA 72 bp | ATCATTGGGTGTTATTCCTGGGAACACTGCTTTTACTaGTTGTCTCTCTTCACCAGTAGAGCCTTGTCTTTG | + |
|
Preference number: 6 (lower is better) Translates to: IIGCYSWEHCFY*LSLFTSRALSL Trigger: CAAAGACAAGGCTCTACTGGTGAAGAGAGACAAGCAGTAAAAGCAGTGTTCCCAGGAATAACACCCAATGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000056470.10 ENSMUST00000223644.2 ENSMUST00000224113.2 |
||
| CDS CCA 72 bp | CTTGCTGTAATGGTTAGGATCATTGGGTGTTATTCCTaGGAACACTGCTTTTACTGCTTGTCTCTCTTCACC | + |
|
Preference number: 6 (lower is better) Translates to: LAVMVRIIGCYS*EHCFYCLSLFT Trigger: GGTGAAGAGAGACAAGCAGTAAAAGCAGTGTTCCCAGGAATAACACCCAATGATCCTAACCATTACAGCAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000056470.10 ENSMUST00000223644.2 ENSMUST00000224113.2 |
||
| CDS TCA 72 bp | CTCCCCTGTATTAATTCTTCTTCGTTTAAGAAGGAGTaGTTCACAATTAGTGGGCTTGCTGTAATGGTTAGG | + |
|
Preference number: 6 (lower is better) Translates to: LPCINSSSFKKE*FTISGLAVMVR Trigger: CCTAACCATTACAGCAAGCCCACTAATTGTGAATCACTCCTTCTTAAACGAAGAAGAATTAATACAGGGGAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000056470.10 ENSMUST00000223644.2 ENSMUST00000224113.2 |
||