Pregenerated sensors for ZFP454 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000048728Ensembl transcript IDs: ENSMUST00000050595.13, ENSMUST00000109131.8, ENSMUST00000125749.2, ENSMUST00000163301.8
Found 68 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | ATTCAGGCCAATAAAAAGGCACTACTATCCAACTGTGGCAGACTGAAGAGTAAGAAGGTCACCAAGTCCTaGACCAGGGCCGGGAGCTGG | + |
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Preference number: 4 (lower is better) Translates to: IQANKKALLSNCGRLKSKKVTKS*TRAGSW Trigger: CCAGCTCCCGGCCCTGGTCCAGGACTTGGTGACCTT...CTTACTCTTCAGTCTGCCACAGTTGGATAGTAGTGCCTTTTTATTGGCCTGAAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000050595.13 ENSMUST00000163301.8 |
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| CDS-3UTR TCA 90 bp | ATTCAGGCCAATAAAAAGGCACTACTATCCAACTGTGGCAGACTGAAGAGTAAGGGGAAGAGTTCACCCTaGAGGCCTTGCCACACTCGT | + |
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Preference number: 4 (lower is better) Translates to: IQANKKALLSNCGRLKSKGKSSP*RPCHTR Trigger: ACGAGTGTGGCAAGGCCTTCAGGGTGAACTCTTCCC...CTTACTCTTCAGTCTGCCACAGTTGGATAGTAGTGCCTTTTTATTGGCCTGAAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR CCA 90 bp | GCCAATAAAAAGGCACTACTATCCAACTGTGGCAGACTGAAGAGTAAGGTGTGTGATGGAGTGTTCTGCTaGGTGAGGACCACTTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: ANKKALLSNCGRLKSKVCDGVFC*VRTTCC Trigger: GCAGCAAGTGGTCCTCACCCAGCAGAACACTCCATC...ACACACCTTACTCTTCAGTCTGCCACAGTTGGATAGTAGTGCCTTTTTATTGGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR TCA 90 bp | ACCTGGCTCCGAGTAAATCCAACCATGATGATAAAAGACTTCAGTGTGATTATGGGGAAGAGTTCACCCTaGAGGCCTTGCCACACTCGT | + |
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Preference number: 4 (lower is better) Translates to: TWLRVNPTMMIKDFSVIMGKSSP*RPCHTR Trigger: ACGAGTGTGGCAAGGCCTTCAGGGTGAACTCTTCCC...CATAATCACACTGAAGTCTTTTATCATCATGGTTGGATTTACTCGGAGCCAGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR TCA 90 bp | ACCTGGCTCCGAGTAAATCCAACCATGATGATAAAAGACTTCAGTGTGATTATGGGGCTGACTGGTCCCTaGAAGCCTTCTCACACAAGC | + |
|
Preference number: 4 (lower is better) Translates to: TWLRVNPTMMIKDFSVIMGLTGP*KPSHTS Trigger: GCTTGTGTGAGAAGGCTTTCAGGGACCAGTCAGCCC...CATAATCACACTGAAGTCTTTTATCATCATGGTTGGATTTACTCGGAGCCAGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR GCA 90 bp | GCCAATAAAAAGGCACTACTATCCAACTGTGGCAGACTGAAGAGTAAGGTGTGTTCACTGAGAAGGCCTTaGCACAGTCCTTGCACTGGT | + |
|
Preference number: 4 (lower is better) Translates to: ANKKALLSNCGRLKSKVCSLRRP*HSPCTG Trigger: ACCAGTGCAAGGACTGTGGCAAGGCCTTCTCAGTGA...ACACACCTTACTCTTCAGTCTGCCACAGTTGGATAGTAGTGCCTTTTTATTGGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR TCA 90 bp | ATTCAGGCCAATAAAAAGGCACTACTATCCAACTGTGGCAGACTGAAGAGTAAGCTCAGGAGCCTCCTCTaGCACACATTCTTCCACTTC | + |
|
Preference number: 4 (lower is better) Translates to: IQANKKALLSNCGRLKSKLRSLL*HTFFHF Trigger: GAAGTGGAAGAATGTGTGTCAGAGGAGGCTCCTGAG...CTTACTCTTCAGTCTGCCACAGTTGGATAGTAGTGCCTTTTTATTGGCCTGAAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000050595.13 ENSMUST00000163301.8 |
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| CDS-3UTR TCA 90 bp | GCCAATAAAAAGGCACTACTATCCAACTGTGGCAGACTGAAGAGTAAGGTGTGTGGGCCGAATGGTCACTaGAGGCTTTCTCACATATGT | + |
|
Preference number: 4 (lower is better) Translates to: ANKKALLSNCGRLKSKVCGPNGH*RLSHIC Trigger: ACATATGTGAGAAAGCCTTCAGTGACCATTCGGCCC...ACACACCTTACTCTTCAGTCTGCCACAGTTGGATAGTAGTGCCTTTTTATTGGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR GCA 90 bp | GCCAATAAAAAGGCACTACTATCCAACTGTGGCAGACTGAAGAGTAAGGTGTGTTTTGATGGAGTGTTCTaGTGGGTGAGGACCACTTGC | + |
|
Preference number: 4 (lower is better) Translates to: ANKKALLSNCGRLKSKVCFDGVF*WVRTTC Trigger: GCAAGTGGTCCTCACCCAGCAGAACACTCCATCAAA...ACACACCTTACTCTTCAGTCTGCCACAGTTGGATAGTAGTGCCTTTTTATTGGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR GCA 90 bp | ATTCAGGCCAATAAAAAGGCACTACTATCCAACTGTGGCAGACTGAAGAGTAAGTCACTGAGAAGGCCTTaGCACAGTCCTTGCACTGGT | + |
|
Preference number: 4 (lower is better) Translates to: IQANKKALLSNCGRLKSKSLRRP*HSPCTG Trigger: ACCAGTGCAAGGACTGTGGCAAGGCCTTCTCAGTGA...CTTACTCTTCAGTCTGCCACAGTTGGATAGTAGTGCCTTTTTATTGGCCTGAAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR CCA 90 bp | CGAGTAAATCCAACCATGATGATAAAAGACTTCAGTGTGATTATGTACTCTCTTAAGGTCACCAAGTCCTaGACCAGGGCCGGGAGCTGG | + |
|
Preference number: 4 (lower is better) Translates to: RVNPTMMIKDFSVIMYSLKVTKS*TRAGSW Trigger: CCAGCTCCCGGCCCTGGTCCAGGACTTGGTGACCTT...AAGAGAGTACATAATCACACTGAAGTCTTTTATCATCATGGTTGGATTTACTCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050595.13 ENSMUST00000163301.8 |
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| CDS-3UTR TCA 90 bp | ATTCAGGCCAATAAAAAGGCACTACTATCCAACTGTGGCAGACTGAAGAGTAAGCTCTTTGGTGATGGATaGGGTGTGTACTCTGGTGGA | + |
|
Preference number: 4 (lower is better) Translates to: IQANKKALLSNCGRLKSKLFGDG*GVYSGG Trigger: TCCACCAGAGTACACACCTCATCCATCACCAAAGAG...CTTACTCTTCAGTCTGCCACAGTTGGATAGTAGTGCCTTTTTATTGGCCTGAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR GCA 90 bp | CTAATAGTAATTCAGGCCAATAAAAAGGCACTACTATCCAACTGTGGCAGACTGTCACTGAGAAGGCCTTaGCACAGTCCTTGCACTGGT | + |
|
Preference number: 4 (lower is better) Translates to: LIVIQANKKALLSNCGRLSLRRP*HSPCTG Trigger: ACCAGTGCAAGGACTGTGGCAAGGCCTTCTCAGTGA...CAGTCTGCCACAGTTGGATAGTAGTGCCTTTTTATTGGCCTGAATTACTATTAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR TCA 90 bp | CCGAGTAAATCCAACCATGATGATAAAAGACTTCAGTGTGATTATGTACTCTCTTGCAACTTCACCTCCTaGCCTTCCTGGCACTGCCAA | + |
|
Preference number: 4 (lower is better) Translates to: PSKSNHDDKRLQCDYVLSCNFTS*PSWHCQ Trigger: TTGGCAGTGCCAGGAAGGTCAGGAGGTGAAGTTGCA...AGAGAGTACATAATCACACTGAAGTCTTTTATCATCATGGTTGGATTTACTCGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR TCA 90 bp | ACCTGGCTCCGAGTAAATCCAACCATGATGATAAAAGACTTCAGTGTGATTATGATGAGCTCTCTGCTCTaGCTCTCTGCTCACTCAGTT | + |
|
Preference number: 4 (lower is better) Translates to: TWLRVNPTMMIKDFSVIMMSSLL*LSAHSV Trigger: AACTGAGTGAGCAGAGAGTCAGAGCAGAGAGCTCAT...CATAATCACACTGAAGTCTTTTATCATCATGGTTGGATTTACTCGGAGCCAGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR TCA 90 bp | CTAATAGTAATTCAGGCCAATAAAAAGGCACTACTATCCAACTGTGGCAGACTGCTCTTTGGTGATGGATaGGGTGTGTACTCTGGTGGA | + |
|
Preference number: 4 (lower is better) Translates to: LIVIQANKKALLSNCGRLLFGDG*GVYSGG Trigger: TCCACCAGAGTACACACCTCATCCATCACCAAAGAG...CAGTCTGCCACAGTTGGATAGTAGTGCCTTTTTATTGGCCTGAATTACTATTAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR TCA 90 bp | CGAGTAAATCCAACCATGATGATAAAAGACTTCAGTGTGATTATGTACTCTCTTGGGCTGACTGGTCCCTaGAAGCCTTCTCACACAAGC | + |
|
Preference number: 4 (lower is better) Translates to: RVNPTMMIKDFSVIMYSLGLTGP*KPSHTS Trigger: GCTTGTGTGAGAAGGCTTTCAGGGACCAGTCAGCCC...AAGAGAGTACATAATCACACTGAAGTCTTTTATCATCATGGTTGGATTTACTCG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR TCA 90 bp | ACCTGGCTCCGAGTAAATCCAACCATGATGATAAAAGACTTCAGTGTGATTATGGGGCCGAATGGTCACTaGAGGCTTTCTCACATATGT | + |
|
Preference number: 4 (lower is better) Translates to: TWLRVNPTMMIKDFSVIMGPNGH*RLSHIC Trigger: ACATATGTGAGAAAGCCTTCAGTGACCATTCGGCCC...CATAATCACACTGAAGTCTTTTATCATCATGGTTGGATTTACTCGGAGCCAGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
||
| CDS-3UTR GCA 90 bp | CTAATAGTAATTCAGGCCAATAAAAAGGCACTACTATCCAACTGTGGCAGACTGTTTGATGGAGTGTTCTaGTGGGTGAGGACCACTTGC | + |
|
Preference number: 4 (lower is better) Translates to: LIVIQANKKALLSNCGRLFDGVF*WVRTTC Trigger: GCAAGTGGTCCTCACCCAGCAGAACACTCCATCAAA...CAGTCTGCCACAGTTGGATAGTAGTGCCTTTTTATTGGCCTGAATTACTATTAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR GCA 90 bp | ACCTGGCTCCGAGTAAATCCAACCATGATGATAAAAGACTTCAGTGTGATTATGTTTGATGGAGTGTTCTaGTGGGTGAGGACCACTTGC | + |
|
Preference number: 4 (lower is better) Translates to: TWLRVNPTMMIKDFSVIMFDGVF*WVRTTC Trigger: GCAAGTGGTCCTCACCCAGCAGAACACTCCATCAAA...CATAATCACACTGAAGTCTTTTATCATCATGGTTGGATTTACTCGGAGCCAGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR TCA 90 bp | ACCTGGCTCCGAGTAAATCCAACCATGATGATAAAAGACTTCAGTGTGATTATGCCAGTGTGGATCCTCTaGTGCTGCAGAAAACTTGTA | + |
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Preference number: 4 (lower is better) Translates to: TWLRVNPTMMIKDFSVIMPVWIL*CCRKLV Trigger: TACAAGTTTTCTGCAGCATCAGAGGATCCACACTGG...CATAATCACACTGAAGTCTTTTATCATCATGGTTGGATTTACTCGGAGCCAGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR TCA 90 bp | ATTCAGGCCAATAAAAAGGCACTACTATCCAACTGTGGCAGACTGAAGAGTAAGAGGATGAGTTATCCCTaGAAGCTTTGCCACATTCGA | + |
|
Preference number: 4 (lower is better) Translates to: IQANKKALLSNCGRLKSKRMSYP*KLCHIR Trigger: TCGAATGTGGCAAAGCTTTCAGGGATAACTCATCCT...CTTACTCTTCAGTCTGCCACAGTTGGATAGTAGTGCCTTTTTATTGGCCTGAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR TCA 90 bp | ATTCAGGCCAATAAAAAGGCACTACTATCCAACTGTGGCAGACTGAAGAGTAAGATGGCGTGCAAAGGATaGGTTATCCCTGAAAGCTTT | + |
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Preference number: 4 (lower is better) Translates to: IQANKKALLSNCGRLKSKMACKG*VIPESF Trigger: AAAGCTTTCAGGGATAACTCATCCTTTGCACGCCAT...CTTACTCTTCAGTCTGCCACAGTTGGATAGTAGTGCCTTTTTATTGGCCTGAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR GCA 90 bp | ACCTGGCTCCGAGTAAATCCAACCATGATGATAAAAGACTTCAGTGTGATTATGCTTTCCCGCATTCGCTaGATTCAAAAGCCGTTTTGC | + |
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Preference number: 4 (lower is better) Translates to: TWLRVNPTMMIKDFSVIMLSRIR*IQKPFC Trigger: GCAAAACGGCTTTTGAATGCAGCGAATGCGGGAAAG...CATAATCACACTGAAGTCTTTTATCATCATGGTTGGATTTACTCGGAGCCAGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR GCA 90 bp | CTAATAGTAATTCAGGCCAATAAAAAGGCACTACTATCCAACTGTGGCAGACTGCTTTCCCGCATTCGCTaGATTCAAAAGCCGTTTTGC | + |
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Preference number: 4 (lower is better) Translates to: LIVIQANKKALLSNCGRLLSRIR*IQKPFC Trigger: GCAAAACGGCTTTTGAATGCAGCGAATGCGGGAAAG...CAGTCTGCCACAGTTGGATAGTAGTGCCTTTTTATTGGCCTGAATTACTATTAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR GCA 90 bp | GCCAATAAAAAGGCACTACTATCCAACTGTGGCAGACTGAAGAGTAAGGTGTGTATTTATAGGGCTTCTTaGCACTGTGAATGTGCTGGT | + |
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Preference number: 4 (lower is better) Translates to: ANKKALLSNCGRLKSKVCIYRAS*HCECAG Trigger: ACCAGCACATTCACAGTGGCAAGAAGCCCTATAAAT...ACACACCTTACTCTTCAGTCTGCCACAGTTGGATAGTAGTGCCTTTTTATTGGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR CCA 90 bp | CGAGTAAATCCAACCATGATGATAAAAGACTTCAGTGTGATTATGTACTCTCTTGATGGAGTGTTCTGCTaGGTGAGGACCACTTGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: RVNPTMMIKDFSVIMYSLDGVFC*VRTTCC Trigger: GCAGCAAGTGGTCCTCACCCAGCAGAACACTCCATC...AAGAGAGTACATAATCACACTGAAGTCTTTTATCATCATGGTTGGATTTACTCG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR TCA 90 bp | CCGAGTAAATCCAACCATGATGATAAAAGACTTCAGTGTGATTATGTACTCTCTATGAGCTCTCTGCTCTaGCTCTCTGCTCACTCAGTT | + |
|
Preference number: 4 (lower is better) Translates to: PSKSNHDDKRLQCDYVLSMSSLL*LSAHSV Trigger: AACTGAGTGAGCAGAGAGTCAGAGCAGAGAGCTCAT...AGAGAGTACATAATCACACTGAAGTCTTTTATCATCATGGTTGGATTTACTCGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR TCA 90 bp | CCGAGTAAATCCAACCATGATGATAAAAGACTTCAGTGTGATTATGTACTCTCTCTCTTTGGTGATGGATaGGGTGTGTACTCTGGTGGA | + |
|
Preference number: 4 (lower is better) Translates to: PSKSNHDDKRLQCDYVLSLFGDG*GVYSGG Trigger: TCCACCAGAGTACACACCTCATCCATCACCAAAGAG...AGAGAGTACATAATCACACTGAAGTCTTTTATCATCATGGTTGGATTTACTCGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR TCA 90 bp | ACCTGGCTCCGAGTAAATCCAACCATGATGATAAAAGACTTCAGTGTGATTATGAGGATGAGTTATCCCTaGAAGCTTTGCCACATTCGA | + |
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Preference number: 4 (lower is better) Translates to: TWLRVNPTMMIKDFSVIMRMSYP*KLCHIR Trigger: TCGAATGTGGCAAAGCTTTCAGGGATAACTCATCCT...CATAATCACACTGAAGTCTTTTATCATCATGGTTGGATTTACTCGGAGCCAGGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR TCA 90 bp | ACCTGGCTCCGAGTAAATCCAACCATGATGATAAAAGACTTCAGTGTGATTATGATGGCGTGCAAAGGATaGGTTATCCCTGAAAGCTTT | + |
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Preference number: 4 (lower is better) Translates to: TWLRVNPTMMIKDFSVIMMACKG*VIPESF Trigger: AAAGCTTTCAGGGATAACTCATCCTTTGCACGCCAT...CATAATCACACTGAAGTCTTTTATCATCATGGTTGGATTTACTCGGAGCCAGGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR TCA 90 bp | CCGAGTAAATCCAACCATGATGATAAAAGACTTCAGTGTGATTATGTACTCTCTGGGCCGAATGGTCACTaGAGGCTTTCTCACATATGT | + |
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Preference number: 4 (lower is better) Translates to: PSKSNHDDKRLQCDYVLSGPNGH*RLSHIC Trigger: ACATATGTGAGAAAGCCTTCAGTGACCATTCGGCCC...AGAGAGTACATAATCACACTGAAGTCTTTTATCATCATGGTTGGATTTACTCGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR GCA 90 bp | ATTCAGGCCAATAAAAAGGCACTACTATCCAACTGTGGCAGACTGAAGAGTAAGACATGCTCTTTCCTTTaGTATCCATTGATCCGACTC | + |
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Preference number: 4 (lower is better) Translates to: IQANKKALLSNCGRLKSKTCSFL*YPLIRL Trigger: GAGTCGGATCAATGGATAGCAAAGGAAAGAGCATGT...CTTACTCTTCAGTCTGCCACAGTTGGATAGTAGTGCCTTTTTATTGGCCTGAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR TCA 90 bp | CGAGTAAATCCAACCATGATGATAAAAGACTTCAGTGTGATTATGTACTCTCTTATGAGCTCTCTGCTCTaGCTCTCTGCTCACTCAGTT | + |
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Preference number: 4 (lower is better) Translates to: RVNPTMMIKDFSVIMYSLMSSLL*LSAHSV Trigger: AACTGAGTGAGCAGAGAGTCAGAGCAGAGAGCTCAT...AAGAGAGTACATAATCACACTGAAGTCTTTTATCATCATGGTTGGATTTACTCG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR TCA 90 bp | CCGAGTAAATCCAACCATGATGATAAAAGACTTCAGTGTGATTATGTACTCTCTCCAGTGTGGATCCTCTaGTGCTGCAGAAAACTTGTA | + |
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Preference number: 4 (lower is better) Translates to: PSKSNHDDKRLQCDYVLSPVWIL*CCRKLV Trigger: TACAAGTTTTCTGCAGCATCAGAGGATCCACACTGG...AGAGAGTACATAATCACACTGAAGTCTTTTATCATCATGGTTGGATTTACTCGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR GCA 90 bp | ATTCAGGCCAATAAAAAGGCACTACTATCCAACTGTGGCAGACTGAAGAGTAAGGAACAAGTTAGCACATaGTCTTTCCTTTGCTATCCA | + |
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Preference number: 4 (lower is better) Translates to: IQANKKALLSNCGRLKSKEQVST*SFLCYP Trigger: TGGATAGCAAAGGAAAGAGCATGTGCTAACTTGTTC...CTTACTCTTCAGTCTGCCACAGTTGGATAGTAGTGCCTTTTTATTGGCCTGAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR GCA 90 bp | CTAATAGTAATTCAGGCCAATAAAAAGGCACTACTATCCAACTGTGGCAGACTGATTTATAGGGCTTCTTaGCACTGTGAATGTGCTGGT | + |
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Preference number: 4 (lower is better) Translates to: LIVIQANKKALLSNCGRLIYRAS*HCECAG Trigger: ACCAGCACATTCACAGTGGCAAGAAGCCCTATAAAT...CAGTCTGCCACAGTTGGATAGTAGTGCCTTTTTATTGGCCTGAATTACTATTAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR TCA 90 bp | CCGAGTAAATCCAACCATGATGATAAAAGACTTCAGTGTGATTATGTACTCTCTATGGCGTGCAAAGGATaGGTTATCCCTGAAAGCTTT | + |
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Preference number: 4 (lower is better) Translates to: PSKSNHDDKRLQCDYVLSMACKG*VIPESF Trigger: AAAGCTTTCAGGGATAACTCATCCTTTGCACGCCAT...AGAGAGTACATAATCACACTGAAGTCTTTTATCATCATGGTTGGATTTACTCGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR GCA 90 bp | ATTCAGGCCAATAAAAAGGCACTACTATCCAACTGTGGCAGACTGAAGAGTAAGTTTCTCAGGGATATCTaGCTTGAGGAATTTCTTACT | + |
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Preference number: 4 (lower is better) Translates to: IQANKKALLSNCGRLKSKFLRDI*LEEFLT Trigger: AGTAAGAAATTCCTCAAGGCAGATATCCCTGAGAAA...CTTACTCTTCAGTCTGCCACAGTTGGATAGTAGTGCCTTTTTATTGGCCTGAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR TCA 90 bp | ACCTGGCTCCGAGTAAATCCAACCATGATGATAAAAGACTTCAGTGTGATTATGATTTCTGACTTGGGTTaGGTTTTTCGGTATGAAGTT | + |
|
Preference number: 4 (lower is better) Translates to: TWLRVNPTMMIKDFSVIMISDLG*VFRYEV Trigger: AACTTCATACCGAAAAACTCAACCCAAGTCAGAAAT...CATAATCACACTGAAGTCTTTTATCATCATGGTTGGATTTACTCGGAGCCAGGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR GCA 90 bp | ACCTGGCTCCGAGTAAATCCAACCATGATGATAAAAGACTTCAGTGTGATTATGTTTCTCAGGGATATCTaGCTTGAGGAATTTCTTACT | + |
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Preference number: 4 (lower is better) Translates to: TWLRVNPTMMIKDFSVIMFLRDI*LEEFLT Trigger: AGTAAGAAATTCCTCAAGGCAGATATCCCTGAGAAA...CATAATCACACTGAAGTCTTTTATCATCATGGTTGGATTTACTCGGAGCCAGGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR GCA 90 bp | CGAGTAAATCCAACCATGATGATAAAAGACTTCAGTGTGATTATGTACTCTCTTACATGCTCTTTCCTTTaGTATCCATTGATCCGACTC | + |
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Preference number: 4 (lower is better) Translates to: RVNPTMMIKDFSVIMYSLTCSFL*YPLIRL Trigger: GAGTCGGATCAATGGATAGCAAAGGAAAGAGCATGT...AAGAGAGTACATAATCACACTGAAGTCTTTTATCATCATGGTTGGATTTACTCG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR TCA 90 bp | CGAGTAAATCCAACCATGATGATAAAAGACTTCAGTGTGATTATGTACTCTCTTATTTCTGACTTGGGTTaGGTTTTTCGGTATGAAGTT | + |
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Preference number: 4 (lower is better) Translates to: RVNPTMMIKDFSVIMYSLISDLG*VFRYEV Trigger: AACTTCATACCGAAAAACTCAACCCAAGTCAGAAAT...AAGAGAGTACATAATCACACTGAAGTCTTTTATCATCATGGTTGGATTTACTCG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS TCA 90 bp | AGGTTCATCTGCGGCATCCAGAACAAAGCCCTCAGGAGCCTCCTCTaGCACACATTCTTCCACTTCCTCCAGGGGAAAGAACATATCTGG | + |
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Preference number: 5 (lower is better) Translates to: RFICGIQNKALRSLL*HTFFHFLQGKEHIW Trigger: CCAGATATGTTCTTTCCCCTGGAGGAAGTGGAAGAATGTGTGTCAGAGGAGGCTCCTGAGGGCTTTGTTCTGGATGCCGCAGATGAACCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000125749.2 ENSMUST00000163301.8 |
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| CDS-3UTR CAA 90 bp | ATTCAGGCCAATAAAAAGGCACTACTATCCAACTGTGGCAGACTGAAGAGTAAGCTCACTGAGAAGGCCTaGCCACAGTCCTTGCACTGG | + |
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Preference number: 5 (lower is better) Translates to: IQANKKALLSNCGRLKSKLTEKA*PQSLHW Trigger: CCAGTGCAAGGACTGTGGCAAGGCCTTCTCAGTGAG...CTTACTCTTCAGTCTGCCACAGTTGGATAGTAGTGCCTTTTTATTGGCCTGAAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR CAA 90 bp | GCCAATAAAAAGGCACTACTATCCAACTGTGGCAGACTGAAGAGTAAGGTGTGTTCTGCTCACTCAGTTTaGATGGAGTGTTCTGCTGGG | + |
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Preference number: 5 (lower is better) Translates to: ANKKALLSNCGRLKSKVCSAHSV*MECSAG Trigger: CCCAGCAGAACACTCCATCAAAACTGAGTGAGCAGA...ACACACCTTACTCTTCAGTCTGCCACAGTTGGATAGTAGTGCCTTTTTATTGGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR CAA 90 bp | GCCAATAAAAAGGCACTACTATCCAACTGTGGCAGACTGAAGAGTAAGGTGTGTTCCTGGCACTGCCAATaGAACAAGTTAGCACATGCT | + |
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Preference number: 5 (lower is better) Translates to: ANKKALLSNCGRLKSKVCSWHCQ*NKLAHA Trigger: AGCATGTGCTAACTTGTTCAATTGGCAGTGCCAGGA...ACACACCTTACTCTTCAGTCTGCCACAGTTGGATAGTAGTGCCTTTTTATTGGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR CAA 90 bp | CCGAGTAAATCCAACCATGATGATAAAAGACTTCAGTGTGATTATGTACTCTCTCTCACTGAGAAGGCCTaGCCACAGTCCTTGCACTGG | + |
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Preference number: 5 (lower is better) Translates to: PSKSNHDDKRLQCDYVLSLTEKA*PQSLHW Trigger: CCAGTGCAAGGACTGTGGCAAGGCCTTCTCAGTGAG...AGAGAGTACATAATCACACTGAAGTCTTTTATCATCATGGTTGGATTTACTCGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR CAA 90 bp | ATTCAGGCCAATAAAAAGGCACTACTATCCAACTGTGGCAGACTGAAGAGTAAGTCCTGGCACTGCCAATaGAACAAGTTAGCACATGCT | + |
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Preference number: 5 (lower is better) Translates to: IQANKKALLSNCGRLKSKSWHCQ*NKLAHA Trigger: AGCATGTGCTAACTTGTTCAATTGGCAGTGCCAGGA...CTTACTCTTCAGTCTGCCACAGTTGGATAGTAGTGCCTTTTTATTGGCCTGAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR CAA 90 bp | ACCTGGCTCCGAGTAAATCCAACCATGATGATAAAAGACTTCAGTGTGATTATGTCTGCTCACTCAGTTTaGATGGAGTGTTCTGCTGGG | + |
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Preference number: 5 (lower is better) Translates to: TWLRVNPTMMIKDFSVIMSAHSV*MECSAG Trigger: CCCAGCAGAACACTCCATCAAAACTGAGTGAGCAGA...CATAATCACACTGAAGTCTTTTATCATCATGGTTGGATTTACTCGGAGCCAGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR CAA 90 bp | GCCAATAAAAAGGCACTACTATCCAACTGTGGCAGACTGAAGAGTAAGGTGTGTAGCCGTTTTGCTTGCTaGAGATCTCTGACTTTGGAT | + |
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Preference number: 5 (lower is better) Translates to: ANKKALLSNCGRLKSKVCSRFAC*RSLTLD Trigger: ATCCAAAGTCAGAGATCTCAAGCAAGCAAAACGGCT...ACACACCTTACTCTTCAGTCTGCCACAGTTGGATAGTAGTGCCTTTTTATTGGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR CAA 90 bp | GCCAATAAAAAGGCACTACTATCCAACTGTGGCAGACTGAAGAGTAAGGTGTGTCCACAGGTTTTACATTaGTACGGTTTTTCTCTCGTG | + |
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Preference number: 5 (lower is better) Translates to: ANKKALLSNCGRLKSKVCPQVLH*YGFSLV Trigger: CACGAGAGAAAAACCGTACAAATGTAAAACCTGTGG...ACACACCTTACTCTTCAGTCTGCCACAGTTGGATAGTAGTGCCTTTTTATTGGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR CAA 90 bp | CCGAGTAAATCCAACCATGATGATAAAAGACTTCAGTGTGATTATGTACTCTCTTCTGCTCACTCAGTTTaGATGGAGTGTTCTGCTGGG | + |
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Preference number: 5 (lower is better) Translates to: PSKSNHDDKRLQCDYVLSSAHSV*MECSAG Trigger: CCCAGCAGAACACTCCATCAAAACTGAGTGAGCAGA...AGAGAGTACATAATCACACTGAAGTCTTTTATCATCATGGTTGGATTTACTCGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR CAA 90 bp | ATTCAGGCCAATAAAAAGGCACTACTATCCAACTGTGGCAGACTGAAGAGTAAGCCACAGGTTTTACATTaGTACGGTTTTTCTCTCGTG | + |
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Preference number: 5 (lower is better) Translates to: IQANKKALLSNCGRLKSKPQVLH*YGFSLV Trigger: CACGAGAGAAAAACCGTACAAATGTAAAACCTGTGG...CTTACTCTTCAGTCTGCCACAGTTGGATAGTAGTGCCTTTTTATTGGCCTGAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR CAA 90 bp | CTAATAGTAATTCAGGCCAATAAAAAGGCACTACTATCCAACTGTGGCAGACTGTCAGGGATATCTGCCTaGAGGAATTTCTTACTCATG | + |
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Preference number: 5 (lower is better) Translates to: LIVIQANKKALLSNCGRLSGISA*RNFLLM Trigger: CATGAGTAAGAAATTCCTCAAGGCAGATATCCCTGA...CAGTCTGCCACAGTTGGATAGTAGTGCCTTTTTATTGGCCTGAATTACTATTAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000050595.13 ENSMUST00000163301.8 |
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| CDS-3UTR CAA 90 bp | ACCTGGCTCCGAGTAAATCCAACCATGATGATAAAAGACTTCAGTGTGATTATGATCGCTTCTCTTTCATaGGTGATTTCTGACTTGGGT | + |
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Preference number: 5 (lower is better) Translates to: TWLRVNPTMMIKDFSVIMIASLS*VISDLG Trigger: ACCCAAGTCAGAAATCACCAATGAAAGAGAAGCGAT...CATAATCACACTGAAGTCTTTTATCATCATGGTTGGATTTACTCGGAGCCAGGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR CAA 90 bp | CTAATAGTAATTCAGGCCAATAAAAAGGCACTACTATCCAACTGTGGCAGACTGATCGCTTCTCTTTCATaGGTGATTTCTGACTTGGGT | + |
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Preference number: 5 (lower is better) Translates to: LIVIQANKKALLSNCGRLIASLS*VISDLG Trigger: ACCCAAGTCAGAAATCACCAATGAAAGAGAAGCGAT...CAGTCTGCCACAGTTGGATAGTAGTGCCTTTTTATTGGCCTGAATTACTATTAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR CAA 90 bp | CGAGTAAATCCAACCATGATGATAAAAGACTTCAGTGTGATTATGTACTCTCTTTCCTGGCACTGCCAATaGAACAAGTTAGCACATGCT | + |
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Preference number: 5 (lower is better) Translates to: RVNPTMMIKDFSVIMYSLSWHCQ*NKLAHA Trigger: AGCATGTGCTAACTTGTTCAATTGGCAGTGCCAGGA...AAGAGAGTACATAATCACACTGAAGTCTTTTATCATCATGGTTGGATTTACTCG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR CAA 90 bp | CCGAGTAAATCCAACCATGATGATAAAAGACTTCAGTGTGATTATGTACTCTCTAGCCGTTTTGCTTGCTaGAGATCTCTGACTTTGGAT | + |
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Preference number: 5 (lower is better) Translates to: PSKSNHDDKRLQCDYVLSSRFAC*RSLTLD Trigger: ATCCAAAGTCAGAGATCTCAAGCAAGCAAAACGGCT...AGAGAGTACATAATCACACTGAAGTCTTTTATCATCATGGTTGGATTTACTCGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS-3UTR CAA 90 bp | CCGAGTAAATCCAACCATGATGATAAAAGACTTCAGTGTGATTATGTACTCTCTTCAGGGATATCTGCCTaGAGGAATTTCTTACTCATG | + |
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Preference number: 5 (lower is better) Translates to: PSKSNHDDKRLQCDYVLSSGISA*RNFLLM Trigger: CATGAGTAAGAAATTCCTCAAGGCAGATATCCCTGA...AGAGAGTACATAATCACACTGAAGTCTTTTATCATCATGGTTGGATTTACTCGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050595.13 ENSMUST00000163301.8 |
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| CDS GCA 72 bp | TTCACACGCAGATCGAGGACCCAAGTGAGGTTCATCTaGGGCATCCAGAACAAAGCCCTCAGGAGCCTCCTC | + |
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Preference number: 6 (lower is better) Translates to: FTRRSRTQVRFI*GIQNKALRSLL Trigger: GAGGAGGCTCCTGAGGGCTTTGTTCTGGATGCCGCAGATGAACCTCACTTGGGTCCTCGATCTGCGTGTGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000125749.2 ENSMUST00000163301.8 |
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| CDS TCA 72 bp | TGCGGCATCCAGAACAAAGCCCTCAGGAGCCTCCTCTaGCACACATTCTTCCACTTCCTCCAGGGGAAAGAA | + |
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Preference number: 6 (lower is better) Translates to: CGIQNKALRSLL*HTFFHFLQGKE Trigger: TTCTTTCCCCTGGAGGAAGTGGAAGAATGTGTGTCAGAGGAGGCTCCTGAGGGCTTTGTTCTGGATGCCGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000125749.2 ENSMUST00000163301.8 |
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| CDS TCA 72 bp | TGCTGGGTGAGGACCACTTGCTGCAACTTCACCTCCTaGCCTTCCTGGCACTGCCAATTGAACAAGTTAGCA | + |
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Preference number: 6 (lower is better) Translates to: CWVRTTCCNFTS*PSWHCQLNKLA Trigger: TGCTAACTTGTTCAATTGGCAGTGCCAGGAAGGTCAGGAGGTGAAGTTGCAGCAAGTGGTCCTCACCCAGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS GCA 72 bp | CTGACTCTCTGCTCACTCAGTTTTGATGGAGTGTTCTaGTGGGTGAGGACCACTTGCTGCAACTTCACCTCC | + |
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Preference number: 6 (lower is better) Translates to: LTLCSLSFDGVF*WVRTTCCNFTS Trigger: GGAGGTGAAGTTGCAGCAAGTGGTCCTCACCCAGCAGAACACTCCATCAAAACTGAGTGAGCAGAGAGTCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS CCA 72 bp | TCTTCCACTTCCTCCAGGGGAAAGAACATATCTGGTTaGGATCCTAAGAGACCTGCCAGTGAGACCAGGTTA | + |
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Preference number: 6 (lower is better) Translates to: SSTSSRGKNISG*DPKRPASETRL Trigger: TAACCTGGTCTCACTGGCAGGTCTCTTAGGATCCCAACCAGATATGTTCTTTCCCCTGGAGGAAGTGGAAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000125749.2 ENSMUST00000163301.8 |
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| CDS TCA 72 bp | ATCTCTGACTTTGGATGGGTGATGAGCTCTCTGCTCTaGCTCTCTGCTCACTCAGTTTTGATGGAGTGTTCT | + |
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Preference number: 6 (lower is better) Translates to: ISDFGWVMSSLL*LSAHSVLMECS Trigger: AGAACACTCCATCAAAACTGAGTGAGCAGAGAGTCAGAGCAGAGAGCTCATCACCCATCCAAAGTCAGAGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS GCA 72 bp | ACCTTCCTGGCACTGCCAATTGAACAAGTTAGCACATaGTCTTTCCTTTGCTATCCATTGATCCGACTCTTT | + |
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Preference number: 6 (lower is better) Translates to: TFLALPIEQVST*SFLCYPLIRLF Trigger: AAAGAGTCGGATCAATGGATAGCAAAGGAAAGAGCATGTGCTAACTTGTTCAATTGGCAGTGCCAGGAAGGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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| CDS GCA 72 bp | CTGCCAATTGAACAAGTTAGCACATGCTCTTTCCTTTaGTATCCATTGATCCGACTCTTTCTCAGGGATATC | + |
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Preference number: 6 (lower is better) Translates to: LPIEQVSTCSFL*YPLIRLFLRDI Trigger: GATATCCCTGAGAAAGAGTCGGATCAATGGATAGCAAAGGAAAGAGCATGTGCTAACTTGTTCAATTGGCAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050595.13 ENSMUST00000109131.8 ENSMUST00000163301.8 |
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