RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZFP423 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000045333

Ensembl transcript IDs: ENSMUST00000052250.15, ENSMUST00000109655.9, ENSMUST00000165770.9, ENSMUST00000174249.2, ENSMUST00000174764.2

Found 657 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TTACTGCAGTCAGATCAAGTCACATTTAAAAGCAGACCATCCAGTTaGACGGAAACCGATTATATTCATTACAGAGTTTTAATCACTGTC +
Preference number: 1 (lower is better)
Translates to: LLQSDQVTFKSRPSS*TETDYIHYRVLITV
Trigger: GACAGTGATTAAAACTCTGTAATGAATATAATCGGTTTCCGTGCAACTGGATGGTCTGCTTTTAAATGTGACTTGATCTGACTGCAGTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
3UTR CAA 90 bp ATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAATGACACTTaGATTGGATGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCG +
Preference number: 2 (lower is better)
Translates to: MAKSLEFYIWVANDT*IGCNVQMALPTASP
Trigger: CGGAGACGCCGTGGGGAGGGCCATTTGAACATTACATCCAATCAAAGTGTCATTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
3UTR-3UTR CCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTAGATGTAATGTTCAAATaGCCCTCCCCACGGCGTCTC +
Preference number: 2 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLDVMFK*PSPRRL
Trigger: GAGACGCCGTGGGGAGGGCCATTTGAACATTACATC...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
3UTR-3UTR CCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATGATGTAATGTTCAAATaGCCCTCCCCACGGCGTCTC +
Preference number: 2 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHDVMFK*PSPRRL
Trigger: GAGACGCCGTGGGGAGGGCCATTTGAACATTACATC...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
3UTR-3UTR GCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATACTAGAAATGTAGTCTaGGGCGAAAACTCTAAAAGC +
Preference number: 2 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHTRNVV*GENSKS
Trigger: GCTTTTAGAGTTTTCGCCGCAGACTACATTTCTAGT...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGTTGGCAGGGCCCCGGTaGGTCTGCAGGTGTTCCCGG +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGELAGPR*VCRCSR
Trigger: CCGGGAACACCTGCAGACGCACCGGGGCCCTGCCAA...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGCAGCGGTGGGCCCGGTaGTCCGTCAGGTCTGCCAGA +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEQRWAR*SVRSAR
Trigger: TCTGGCAGACCTGACGGACCACCGGGCCCACCGCTG...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
CDS-3UTR CCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGGTCAGCAGGTTCGGGTaGGGCCAGGCCACCCACCTG +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEVSRFG*GQATHL
Trigger: CAGGTGGGTGGCCTGGCCCCACCCGAACCTGCTGAC...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGCAGGTCGGCGGGCTCTaGCTTCTTGGTGGAGGTGGG +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEQVGGL*LLGGGG
Trigger: CCCACCTCCACCAAGAAGGCAGAGCCCGCCGACCTG...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGATTGGCAGGGCCCCGGTaGGTCTGCAGGTGTTCCCGG +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRLAGPR*VCRCSR
Trigger: CCGGGAACACCTGCAGACGCACCGGGGCCCTGCCAA...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGATCTCCAGGACAGCGGTaGGCCCGGTGGTCCGTCAGG +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRSPGQR*ARWSVR
Trigger: CCTGACGGACCACCGGGCCCACCGCTGTCCTGGAGA...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
CDS-3UTR TCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGAGCAGACGGGGCACTTaGAGGTACCGCCCATGCCCT +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGESRRGT*RYRPCP
Trigger: AGGGCATGGGCGGTACCTTCAAGTGCCCCGTCTGCT...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGGCCTGCATGTGGCTCTaGAGGGAGCTGGTGGAGGAG +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEACMWL*RELVEE
Trigger: CTCCTCCACCAGCTCCCTGCAGAGCCACATGCAGGC...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGTTACTGGAGTCGGGCTaGCGGTGGCTGTCCAGGTGG +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGELLESG*RWLSRW
Trigger: CCACCTGGACAGCCACCGGCAGCCCGACTCCAGTAA...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGAGTCGGGCTGCCGGTaGCTGTCCAGGTGGCAGTAC +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRESGCR*LSRWQY
Trigger: GTACTGCCACCTGGACAGCCACCGGCAGCCCGACTC...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGGCCGGGTTGCCGAGGTaGCTGTGTTTGACGTGCACC +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEAGLPR*LCLTCT
Trigger: GGTGCACGTCAAACACAGCCACCTCGGCAACCCGGC...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGATGCACTTGTGGGCCTTaGCCGGGTTGCCGAGGTGGC +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRCTCGP*PGCRGG
Trigger: GCCACCTCGGCAACCCGGCCAAGGCCCACAAGTGCA...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGCACCCACCTGTCCATTaGCACTCCGGGCCATGCAGC +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEHPPVH*HSGPCS
Trigger: GCTGCATGGCCCGGAGTGCCAATGGACAGGTGGGTG...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGCTTGCTGGAGGGAGATaGAGCCACCCAGGAGAGCTG +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGELAGGR*SHPGEL
Trigger: CAGCTCTCCTGGGTGGCTTCATCTCCCTCCAGCAAG...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
CDS-3UTR TCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGGCACAGGGTCAGGGCTaGCGCTGTGGTTACTGGAGT +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEAQGQG*RCGYWS
Trigger: ACTCCAGTAACCACAGCGTCAGCCCTGACCCTGTGC...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGCGAGGTGGCTGTGTTTaGCGTGCACCTGCAGGTCAG +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGERGGCV*RAPAGQ
Trigger: CTGACCTGCAGGTGCACGTCAAACACAGCCACCTCG...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGGCGCCTCAGGATTCTTaGGCAGCATGCCCTGCAGGT +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEAPQDS*AACPAG
Trigger: ACCTGCAGGGCATGCTGCTCAAGAATCCTGAGGCGC...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGCCTTCTCTGAGAGCTaGGGGTGGAGGGTGAGCACG +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRAFSES*GWRVST
Trigger: CGTGCTCACCCTCCACCCGCAGCTCTCAGAGAAGGC...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGATTACTGGAGTCGGGCTaGCGGTGGCTGTCCAGGTGG +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRLLESG*RWLSRW
Trigger: CCACCTGGACAGCCACCGGCAGCCCGACTCCAGTAA...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGTCTCGCCGCAGAAGATaGACTTGTGGGCCTTGGCCG +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGESRRRR*TCGPWP
Trigger: CGGCCAAGGCCCACAAGTGCATCTTCTGCGGCGAGA...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGCGGAGGCGGTGGTTCTaGAGCAACACCTCCATGGTG +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGERRRWF*SNTSMV
Trigger: CACCATGGAGGTGTTGCTGCAGAACCACCGCCTCCG...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGTCACGGTGGTCCACCTaGATGTGGCTCTCCAGGTCC +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGESRWST*MWLSRS
Trigger: GGACCTGGAGAGCCACATGCAGGTGGACCACCGTGA...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGTTGGCGTGGGCTTGGTaGATGTGGGCAAGCAGCGTG +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGELAWAW*MWASSV
Trigger: CACGCTGCTTGCCCACATCCACCAAGCCCACGCCAA...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGTGGTTGGCGTGGGCTTaGTGGATGTGGGCAAGCAGC +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEWLAWA*WMWASS
Trigger: GCTGCTTGCCCACATCCACCAAGCCCACGCCAACCA...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGCGGTGGCTGTCCAGGTaGCAGTACACACCCTCCACA +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGERWLSR*QYTPST
Trigger: TGTGGAGGGTGTGTACTGCCACCTGGACAGCCACCG...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGTCAGGGCTGACGCTGTaGTTACTGGAGTCGGGCTGC +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGESGLTL*LLESGC
Trigger: GCAGCCCGACTCCAGTAACCACAGCGTCAGCCCTGA...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGTCAGTGGCTTCAAGGTaGAGTCTGGCGTGGACCCGC +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGESVASR*SLAWTR
Trigger: GCGGGTCCACGCCAGACTCCACCTTGAAGCCACTGA...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGGCTGCCTCGCACTCGTaGCAGTGGTACTTCTTGTCG +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEAASHS*QWYFLS
Trigger: CGACAAGAAGTACCACTGTCACGAGTGCGAGGCAGC...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGTCTTCAGGTGGATCTTaGGGTGGTCGCTGCGGGAGA +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGESSGGS*GGRCGR
Trigger: TCTCCCGCAGCGACCACCTCAAGATCCACCTGAAGA...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGTGCACACGCTGCACTTaGACGGCTTGCTGGAGCTGT +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGECTRCT*TACWSC
Trigger: ACAGCTCCAGCAAGCCGTTCAAGTGCAGCGTGTGCA...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGCACAGGGTCAGGGCTaGCGCTGTGGTTACTGGAGT +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRAQGQG*RCGYWS
Trigger: ACTCCAGTAACCACAGCGTCAGCCCTGACCCTGTGC...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGCTTCTCCAGCAGGATaGCGGCATGGAAGGCCTTGC +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRASPAG*RHGRPC
Trigger: GCAAGGCCTTCCATGCCGTCATCCTGCTGGAGAAGC...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGGCCATACATGGGCTCTaGTGCGTCCACGTCATCCTC +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEAIHGL*CVHVIL
Trigger: GAGGATGACGTGGACGCATCAGAGCCCATGTATGGC...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGATCACCTTGTGCTCGGTaGGTGTCAGCAGCGAGGGGA +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRSPCAR*VSAARG
Trigger: TCCCCTCGCTGCTGACACTCACCGAGCACAAGGTGA...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGGTGGTCCGTCAGGTCTaGCAGAGACTCGAAGTCCTG +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEVVRQV*QRLEVL
Trigger: CAGGACTTCGAGTCTCTGGCAGACCTGACGGACCAC...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
CDS-3UTR GCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGCTGCGGGAGAAAGCTaGCTCGCACTCGTGACAGTG +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRAAGES*LALVTV
Trigger: CACTGTCACGAGTGCGAGGCAGCTTTCTCCCGCAGC...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGTGGAGGGTGAGCACGTaGTTCTCCAGCTCCTCTGTC +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEWRVST*FSSSSV
Trigger: GACAGAGGAGCTGGAGAAGCACGTGCTCACCCTCCA...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGTCCACAGAGGAGAACTaGTCAGGGCACATGGGGCAC +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGESTEEN*SGHMGH
Trigger: GTGCCCCATGTGCCCTGAGCAGTTCTCCTCTGTGGA...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGGCATTGGGGCCACAGTaGGAGACTCGAATGTGCTCC +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEALGPQ*ETRMCS
Trigger: GGAGCACATTCGAGTCTCGCACTGTGGCCCCAATGC...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAAGCAGCAGCTCCAGGTaGAGCTTCAGGTGGGTCTGG +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRSSSSR*SFRWVW
Trigger: CCAGACCCACCTGAAGCTGCACCTGGAGCTGCTGCT...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGTGTTTGACGTGCACCTaGAGGTCAGCCTCCTTGCGG +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGECLTCT*RSASLR
Trigger: CCGCAAGGAGGCTGACCTGCAGGTGCACGTCAAACA...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGTGGCTGTGTTTGACGTaGACCTGCAGGTCAGCCTCC +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEWLCLT*TCRSAS
Trigger: GGAGGCTGACCTGCAGGTGCACGTCAAACACAGCCA...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGATCTCGCCGCAGAAGATaGACTTGTGGGCCTTGGCCG +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRSRRRR*TCGPWP
Trigger: CGGCCAAGGCCCACAAGTGCATCTTCTGCGGCGAGA...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGCTCCATGGTGTAGGCTaGACCGCAGATGTCACAGCC +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGELHGVG*TADVTA
Trigger: GGCTGTGACATCTGCGGTGCAGCCTACACCATGGAG...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGAGGAGGCAGCTGAGCTaGCAGCCAGCTTCTGCATGT +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGERRQLS*QPASAC
Trigger: ACATGCAGAAGCTGGCTGGCAGCTCAGCTGCCTCCT...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGATCACGGTGGTCCACCTaGATGTGGCTCTCCAGGTCC +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRSRWST*MWLSRS
Trigger: GGACCTGGAGAGCCACATGCAGGTGGACCACCGTGA...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGTTCCAGGCCTCCTGCTaGTGCCACAGAGGAATCCCA +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEFQASC*CHRGIP
Trigger: TGGGATTCCTCTGTGGCAGCAGCAGGAGGCCTGGAA...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109655.9
CDS-3UTR CCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGATTGTGGGCCTGCATGTaGCTCTGCAGGGAGCTGGTG +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRLWACM*LCRELV
Trigger: CACCAGCTCCCTGCAGAGCCACATGCAGGCCCACAA...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGATCTGAGAGCTGCGGGTaGAGGGTGAGCACGTGCTTC +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRSESCG*RVSTCF
Trigger: GAAGCACGTGCTCACCCTCCACCCGCAGCTCTCAGA...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGTGGGCTTGGTGGATGTaGGCAAGCAGCGTGCTCTCA +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEWAWWM*ASSVLS
Trigger: TGAGAGCACGCTGCTTGCCCACATCCACCAAGCCCA...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGGGGCACTTGTGTTTCTaGTTGGCGTGGGCTTGGTGG +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEGHLCF*LAWAWW
Trigger: CCACCAAGCCCACGCCAACCAGAAACACAAGTGCCC...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGATCAGGGCTGACGCTGTaGTTACTGGAGTCGGGCTGC +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRSGLTL*LLESGC
Trigger: GCAGCCCGACTCCAGTAACCACAGCGTCAGCCCTGA...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGATCAGTGGCTTCAAGGTaGAGTCTGGCGTGGACCCGC +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRSVASR*SLAWTR
Trigger: GCGGGTCCACGCCAGACTCCACCTTGAAGCCACTGA...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGACAGAAGATGCACTTGTaGGCCTTGGCCGGGTTGCCG +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRQKMHL*ALAGLP
Trigger: CGGCAACCCGGCCAAGGCCCACAAGTGCATCTTCTG...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAAGCTTCTGCAGTCCCTaGCCATTGGGGGAGGAGGCA +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRSFCSP*PLGEEA
Trigger: TGCCTCCTCCCCCAATGGCCAGGGACTGCAGAAGCT...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGCTGTGCTCAATGAGGTaGCAGAGGAGCTTGGCTGGG +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGELCSMR*QRSLAG
Trigger: CCCAGCCAAGCTCCTCTGCCACCTCATTGAGCACAG...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGATGCACACGCTGCACTTaGACGGCTTGCTGGAGCTGT +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRCTRCT*TACWSC
Trigger: ACAGCTCCAGCAAGCCGTTCAAGTGCAGCGTGTGCA...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGGCTCCTGCAGGCTGTTaGTGTCAGCAAACATCTCGG +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEAPAGC*CQQTSR
Trigger: CCGAGATGTTTGCTGACATCAACAGCCTGCAGGAGC...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGAAGGACTGTGTGGGCTaGACAACAGGAGACTCCAGC +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEKDCVG*TTGDSS
Trigger: GCTGGAGTCTCCTGTTGTTCAGCCCACACAGTCCTT...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGAACTTGAGGTCGCACTaGTTGCAGGGGTACTCGCCA +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGENLRSH*LQGYSP
Trigger: TGGCGAGTACCCCTGCAATCAGTGCGACCTCAAGTT...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGGAGTCGAAGACCTCCTaGCACAGCGTGCAGTGGTAT +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEESKTS*HSVQWY
Trigger: ATACCACTGCACGCTGTGTCAGGAGGTCTTCGACTC...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGATGGAGGGTGAGCACGTaGTTCTCCAGCTCCTCTGTC +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRWRVST*FSSSSV
Trigger: GACAGAGGAGCTGGAGAAGCACGTGCTCACCCTCCA...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGCAGCCTTGGACTTCTTaGTGTGTGCCAGCGGGATGT +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEQPWTS*CVPAGC
Trigger: ACATCCCGCTGGCACACAGCAAGAAGTCCAAGGCTG...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGAGTCGAAGTCCTCTTTaGACTGGGGGCAGGCCTGTT +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGESRSPL*TGGRPV
Trigger: AACAGGCCTGCCCCCAGTGCAAAGAGGACTTCGACT...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGTCCACCGAGGAGAACTaGTTGTCACAGCTCTCGCAC +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGESTEEN*LSQLSH
Trigger: GTGCGAGAGCTGTGACAAGCAGTTCTCCTCGGTGGA...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGATGCTTCTCCCGCAGGTaGTTCTCCAGCAGGATGACG +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRCFSRR*FSSRMT
Trigger: CGTCATCCTGCTGGAGAAGCACCTGCGGGAGAAGCA...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGCGTCAAACACGCAGTaGTTCTCCCGCAGGTGCTTC +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRASNTQ*FSRRCF
Trigger: GAAGCACCTGCGGGAGAAGCACTGCGTGTTTGACGC...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGATGCAGATGCGACAGGTaGCCGTGTCCAGACTCTTGC +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRCRCDR*PCPDSC
Trigger: GCAAGAGTCTGGACACGGGCACCTGTCGCATCTGCA...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGGTCGAGGTGACAGTCTaGATACAGACCACACAGCGG +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEVEVTV*IQTTQR
Trigger: CCGCTGTGTGGTCTGTATGCAGACTGTCACCTCGAC...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAAGGAGGCAGCTGAGCTaGCAGCCAGCTTCTGCATGT +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRRRQLS*QPASAC
Trigger: ACATGCAGAAGCTGGCTGGCAGCTCAGCTGCCTCCT...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGGGCTTGCTGGAGCTGTaGGTCTTCAGGTGGATCTTG +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEGLLEL*VFRWIL
Trigger: CAAGATCCACCTGAAGACCCACAGCTCCAGCAAGCC...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGACTTCTGCCCCCTCAGTaGCTTCAAGGTGGAGTCTGG +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRLLPPQ*LQGGVW
Trigger: CCAGACTCCACCTTGAAGCCACTGAGGGGGCAGAAG...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGCAGGAGACTCCAGCTTaGTGCTCCCCACACTGCAAT +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEQETPA*CSPHCN
Trigger: ATTGCAGTGTGGGGAGCACCAAGCTGGAGTCTCCTG...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGAGGTGCAGCTTCAGGTaGGTCTGGAAGCTCTCGAAG +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGERCSFR*VWKLSK
Trigger: CTTCGAGAGCTTCCAGACCCACCTGAAGCTGCACCT...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGAAGTCCTCTTTGCACTaGGGGCAGGCCTGTTTCCGA +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEKSSLH*GQACFR
Trigger: TCGGAAACAGGCCTGCCCCCAGTGCAAAGAGGACTT...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGCCTGGATGGACACCTTaGAGTCGAAGACCTCCTGAC +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEPGWTP*SRRPPD
Trigger: GTCAGGAGGTCTTCGACTCCAAGGTGTCCATCCAGG...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGCCAGGTGCACCTGGATaGACACCTTGGAGTCGAAGA +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEPGAPG*TPWSRR
Trigger: TCTTCGACTCCAAGGTGTCCATCCAGGTGCACCTGG...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGCAGCAACACCTCCATaGTGTAGGCTGCACCGCAGA +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRAATPP*CRLHRR
Trigger: TCTGCGGTGCAGCCTACACCATGGAGGTGTTGCTGC...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGACTGTGCTCAATGAGGTaGCAGAGGAGCTTGGCTGGG +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRLCSMR*QRSLAG
Trigger: CCCAGCCAAGCTCCTCTGCCACCTCATTGAGCACAG...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGCTCCTGCAGGCTGTTaGTGTCAGCAAACATCTCGG +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRAPAGC*CQQTSR
Trigger: CCGAGATGTTTGCTGACATCAACAGCCTGCAGGAGC...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAAAGGACTGTGTGGGCTaGACAACAGGAGACTCCAGC +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRKDCVG*TTGDSS
Trigger: GCTGGAGTCTCCTGTTGTTCAGCCCACACAGTCCTT...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAAACTTGAGGTCGCACTaGTTGCAGGGGTACTCGCCA +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRNLRSH*LQGYSP
Trigger: TGGCGAGTACCCCTGCAATCAGTGCGACCTCAAGTT...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGAGTCGAAGACCTCCTaGCACAGCGTGCAGTGGTAT +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRESKTS*HSVQWY
Trigger: ATACCACTGCACGCTGTGTCAGGAGGTCTTCGACTC...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGTGCTACGGAACTCTTTaGGGCACAGGGCGCATTTGT +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGECYGTL*GTGRIC
Trigger: ACAAATGCGCCCTGTGCCTCAAAGAGTTCCGTAGCA...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGGGACTTCTTGCTGTGTaGCAGCGGGATGTTCTTGTG +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEGLLAV*QRDVLV
Trigger: CACAAGAACATCCCGCTGGCACACAGCAAGAAGTCC...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGACAGCCTTGGACTTCTTaGTGTGTGCCAGCGGGATGT +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRQPWTS*CVPAGC
Trigger: ACATCCCGCTGGCACACAGCAAGAAGTCCAAGGCTG...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAAGTCGAAGTCCTCTTTaGACTGGGGGCAGGCCTGTT +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRSRSPL*TGGRPV
Trigger: AACAGGCCTGCCCCCAGTGCAAAGAGGACTTCGACT...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGATCCACCGAGGAGAACTaGTTGTCACAGCTCTCGCAC +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRSTEEN*LSQLSH
Trigger: GTGCGAGAGCTGTGACAAGCAGTTCTCCTCGGTGGA...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGATTCTTCTCGTTGCTGTaGTTCACGGCCAGGTGCACC +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRFFSLL*FTARCT
Trigger: GGTGCACCTGGCCGTGAAGCACAGCAACGAGAAGAA...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGCCCAGTTGCAGGCTGTaGAGCGGTACATCTTCTTCT +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEPSCRL*SGTSSS
Trigger: AGAAGAAGATGTACCGCTGCACAGCCTGCAACTGGG...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGATCTGCAGTGGCATTTTaGAGATGCGACAGGTGCCCG +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRSAVAF*RCDRCP
Trigger: CGGGCACCTGTCGCATCTGCAAAATGCCACTGCAGA...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGGGGTGCATCTGGCAGTaGTCAATGAACTCCTCCTCA +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEGCIWQ*SMNSSS
Trigger: TGAGGAGGAGTTCATTGAGCACTGCCAGATGCACCC...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGTCGAGGTGACAGTCTaGATACAGACCACACAGCGG +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRVEVTV*IQTTQR
Trigger: CCGCTGTGTGGTCTGTATGCAGACTGTCACCTCGAC...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGTTGTCCTCCTGCCCGTaGACGGCAAAGATATGCTGT +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGELSSCP*TAKICC
Trigger: ACAGCATATCTTTGCCGTGCACGGGCAGGAGGACAA...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGGGCAGCTTGTCGCTGTaGATCTGTTCATGCCTCTTC +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEGSLSL*ICSCLF
Trigger: GAAGAGGCATGAACAGATCCACAGCGACAAGCTGCC...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAAGGTGGATCTTGAGGTaGTCGCTGCGGGAGAAAGCT +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRRWILR*SLREKA
Trigger: AGCTTTCTCCCGCAGCGACCACCTCAAGATCCACCT...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGTCCAGCTCCTCTGTCTaGCTAAAGGTATCCTCGCAG +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGESSSSV*LKVSSQ
Trigger: CTGCGAGGATACCTTTAGCCAGACAGAGGAGCTGGA...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGATGTTTCTGGTTGGCGTaGGCTTGGTGGATGTGGGCA +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRCFWLA*AWWMWA
Trigger: TGCCCACATCCACCAAGCCCACGCCAACCAGAAACA...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAAAGTCCTCTTTGCACTaGGGGCAGGCCTGTTTCCGA +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRKSSLH*GQACFR
Trigger: TCGGAAACAGGCCTGCCCCCAGTGCAAAGAGGACTT...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGACCAGGTGCACCTGGATaGACACCTTGGAGTCGAAGA +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRPGAPG*TPWSRR
Trigger: TCTTCGACTCCAAGGTGTCCATCCAGGTGCACCTGG...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAAGCAGGATGACGGCATaGAAGGCCTTGCTGCAGAAC +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRSRMTA*KALLQN
Trigger: GTTCTGCAGCAAGGCCTTCCATGCCGTCATCCTGCT...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGAAGTCGGGGTGCATCTaGCAGTGCTCAATGAACTCC +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEKSGCI*QCSMNS
Trigger: GGAGTTCATTGAGCACTGCCAGATGCACCCCGACTT...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGTGCTGGCTCATCGTGTaGTTCTGCAACTCTGTCTGG +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGECWLIV*FCNSVW
Trigger: CCAGACAGAGTTGCAGAACCACACGATGAGCCAGCA...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAAGTAGCTCAGGCGGATaGAGGACTTGTCGCAGAACT +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRSSSGG*RTCRRT
Trigger: AGTTCTGCGACAAGTCCTTCATCCGCCTGAGCTACT...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAAGGAGTAGACCTCCATaGAGGACTGTGTGGGCTGAA +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRRSRPP*RTVWAE
Trigger: TTCAGCCCACACAGTCCTTCATGGAGGTCTACTCCT...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGACGAAGTTGGAGAACTTaGGGTCGCACTGATTGCAGG +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRRSWRT*GRTDCR
Trigger: CCTGCAATCAGTGCGACCTCAAGTTCTCCAACTTCG...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGATCTGGCAGTGCTCAATaGACTCCTCCTCACTCTGCA +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRSGSAQ*TPPHSA
Trigger: TGCAGAGTGAGGAGGAGTTCATTGAGCACTGCCAGA...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGCCAGCTTCTGCATGTaGAAGGTGCCATGGATCTTG +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRASFCM*KVPWIL
Trigger: CAAGATCCATGGCACCTTTCACATGCAGAAGCTGGC...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGATGCTACGGAACTCTTTaGGGCACAGGGCGCATTTGT +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRCYGTL*GTGRIC
Trigger: ACAAATGCGCCCTGTGCCTCAAAGAGTTCCGTAGCA...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGTGTGGGCAAGCAGCGTaGTCTCATCAACAAAGACCT +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGECGQAA*SHQQRP
Trigger: AGGTCTTTGTTGATGAGAGCACGCTGCTTGCCCACA...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGATGCGAGACTCGAATGTaGTCCTGCAGGCTGTTGATG +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRCETRM*SCRLLM
Trigger: CATCAACAGCCTGCAGGAGCACATTCGAGTCTCGCA...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGACATCTTCTTCTCGTTaGTGTGCTTCACGGCCAGGT +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGETSSSR*CASRPG
Trigger: ACCTGGCCGTGAAGCACAGCAACGAGAAGAAGATGT...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGATCCTTGTTCTTCTTGTaGGCCTGCATGTGGCTCTGC +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRSLFFL*ACMWLC
Trigger: GCAGAGCCACATGCAGGCCCACAAGAAGAACAAGGA...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGCTTCCTTCTCCGACTTaGCCAGGTGTTCCTTGTTCT +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGELPSPT*PGVPCS
Trigger: AGAACAAGGAACACCTGGCCAAGTCGGAGAAGGAAG...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGATGTAGAGCGTGGGCATaGAGTCAAGGCAGATCTGAC +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRCRAWA*SQGRSD
Trigger: GTCAGATCTGCCTTGACTCCATGCCCACGCTCTACA...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGATGTCACAGCCATACATaGGCTCTGATGCGTCCACGT +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRCHSHT*ALMRPR
Trigger: ACGTGGACGCATCAGAGCCCATGTATGGCTGTGACA...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGTGGCACTTGATACACTaGTACGTCTTCTTCCTGGGC +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEWHLIH*YVFFLG
Trigger: GCCCAGGAAGAAGACGTACCAGTGTATCAAGTGCCA...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGCCTCGATCATGTGGTTaGCGACGTGGATCTGAATCT +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEPRSCG*RRGSES
Trigger: AGATTCAGATCCACGTCGCCAACCACATGATCGAGG...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGATGCAGCTTGTTGGCCTaGACGAAGACTGTGAAGCAG +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRCSLLA*TKTVKQ
Trigger: CTGCTTCACAGTCTTCGTCCAGGCCAACAAGCTGCA...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGATGCACGGCAAAGATATaGTGTTGCAGCTTGTTGGCC +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRCTAKI*CCSLLA
Trigger: GGCCAACAAGCTGCAACAGCATATCTTTGCCGTGCA...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGGAAGAAAAACTTCTGTaGGCACTGCGAGCAGTCGTA +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEEEKLL*ALRAVV
Trigger: TACGACTGCTCGCAGTGCCCACAGAAGTTTTTCTTC...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGATCATTTCTCTCCTCTTaGCTTGTCACGCTGTTCCTG +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRSFLSS*LVTLFL
Trigger: CAGGAACAGCGTGACAAGTCAAGAGGAGAGAAATGA...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
CDS-3UTR TCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGATCGCAGGTGTAAATTaGCTCATCTTCCACGTCTTC +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEIAGVN*LIFHVF
Trigger: GAAGACGTGGAAGATGAGTCAATTTACACCTGCGAT...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
CDS-3UTR GCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTAGGGCCCCGGTGCGTCTaGAGGTGTTCCCGGAGCCCG +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLGPRCV*RCSRSP
Trigger: CGGGCTCCGGGAACACCTGCAGACGCACCGGGGCCC...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAAGGGCCCCGGTGCGTCTaGAGGTGTTCCCGGAGCCCG +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKGPRCV*RCSRSP
Trigger: CGGGCTCCGGGAACACCTGCAGACGCACCGGGGCCC...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGAAGCCCATGGAGCACTaGTTGCAGAAGAAAGCATTA +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEKPMEH*LQKKAL
Trigger: TAATGCTTTCTTCTGCAACCAGTGCTCCATGGGCTT...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGGGGAGTCGAACATCTaGTTGCACAGTTTACACTCA +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRGESNI*LHSLHS
Trigger: TGAGTGTAAACTGTGCAACCAGATGTTCGACTCCCC...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATGGGCCCCGGTGCGTCTaGAGGTGTTCCCGGAGCCCG +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHGPRCV*RCSRSP
Trigger: CGGGCTCCGGGAACACCTGCAGACGCACCGGGGCCC...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGATTCTCGAACGTCATCTaGCACTTGATACACTGGTAC +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRFSNVI*HLIHWY
Trigger: GTACCAGTGTATCAAGTGCCAGATGACGTTCGAGAA...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAAGTCGAACATCTGGTTaGACAGTTTACACTCATGGT +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRSRTSG*TVYTHG
Trigger: ACCATGAGTGTAAACTGTGCAACCAGATGTTCGACT...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAACAGCGGTGGGCCCGGTaGTCCGTCAGGTCTGCCAGA +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKQRWAR*SVRSAR
Trigger: TCTGGCAGACCTGACGGACCACCGGGCCCACCGCTG...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
CDS-3UTR CCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTATCTCCAGGACAGCGGTaGGCCCGGTGGTCCGTCAGG +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLSPGQR*ARWSVR
Trigger: CCTGACGGACCACCGGGCCCACCGCTGTCCTGGAGA...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
CDS-3UTR CCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGCACACGTTACACTTATaGCTGCCCTTTATGAATTCT +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEHTLHL*LPFMNS
Trigger: AGAATTCATAAAGGGCAGCCATAAGTGTAACGTGTG...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGACACAGTTTACACTCATaGTTAATGCCTTCCTCGATC +
Preference number: 4 (lower is better)
Translates to: CNVQMALPTASPASLLRRHSLHS*LMPSSI
Trigger: GATCGAGGAAGGCATTAACCATGAGTGTAAACTGTG...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAATTCTGCCTTCTTGCGTaGGCCGTCGTCCTCGCCGGG +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKFCLLA*AVVLAG
Trigger: CCCGGCGAGGACGACGGCTCACGCAAGAAGGCAGAA...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAAGAGTCGGGCTGCCGGTaGCTGTCCAGGTGGCAGTAC +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKESGCR*LSRWQY
Trigger: GTACTGCCACCTGGACAGCCACCGGCAGCCCGACTC...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAAAGGTGGAGTCTGGCGTaGACCCGCGCTCCACAGAGG +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKRWSLA*TRAPQR
Trigger: CCTCTGTGGAGCGCGGGTCCACGCCAGACTCCACCT...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTAAGGTGGAGTCTGGCGTaGACCCGCGCTCCACAGAGG +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLRWSLA*TRAPQR
Trigger: CCTCTGTGGAGCGCGGGTCCACGCCAGACTCCACCT...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGAGCGGGATGTTCTTGTaGTTCTCTTTAATGTGTTTA +
Preference number: 4 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGESGMFL*FSLMCL
Trigger: TAAACACATTAAAGAGAACCACAAGAACATCCCGCT...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTATGCACTTGTGGGCCTTaGCCGGGTTGCCGAGGTGGC +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLCTCGP*PGCRGG
Trigger: GCCACCTCGGCAACCCGGCCAAGGCCCACAAGTGCA...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATGTCAGCAGGTTCGGGTaGGGCCAGGCCACCCACCTG +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHVSRFG*GQATHL
Trigger: CAGGTGGGTGGCCTGGCCCCACCCGAACCTGCTGAC...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAAGGCACTGGTGACGTCTaGGCACCTTTCCGGGGCCCA +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKGTGDV*APFRGP
Trigger: TGGGCCCCGGAAAGGTGCCCAGACGTCACCAGTGCC...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATTTCTGCCTTCTTGCGTaGGCCGTCGTCCTCGCCGGG +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHFCLLA*AVVLAG
Trigger: CCCGGCGAGGACGACGGCTCACGCAAGAAGGCAGAA...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAACTTCCTGGGCACTGGTaGCGTCTGGGCACCTTTCCG +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKLPGHW*RLGTFP
Trigger: CGGAAAGGTGCCCAGACGTCACCAGTGCCCAGGAAG...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTAGCCTGCATGTGGCTCTaGAGGGAGCTGGTGGAGGAG +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLACMWL*RELVEE
Trigger: CTCCTCCACCAGCTCCCTGCAGAGCCACATGCAGGC...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAAGCCTGCATGTGGCTCTaGAGGGAGCTGGTGGAGGAG +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKACMWL*RELVEE
Trigger: CTCCTCCACCAGCTCCCTGCAGAGCCACATGCAGGC...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAAGCCTTCTCTGAGAGCTaGGGGTGGAGGGTGAGCACG +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKAFSES*GWRVST
Trigger: CGTGCTCACCCTCCACCCGCAGCTCTCAGAGAAGGC...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTATTACTGGAGTCGGGCTaGCGGTGGCTGTCCAGGTGG +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLLLESG*RWLSRW
Trigger: CCACCTGGACAGCCACCGGCAGCCCGACTCCAGTAA...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATCAGGTCGGCGGGCTCTaGCTTCTTGGTGGAGGTGGG +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHQVGGL*LLGGGG
Trigger: CCCACCTCCACCAAGAAGGCAGAGCCCGCCGACCTG...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAATCTGCAGGGAGCTGGTaGAGGAGAAGCCGCGCTTGC +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKSAGSW*RRSRAC
Trigger: GCAAGCGCGGCTTCTCCTCCACCAGCTCCCTGCAGA...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATAGGTGGAGTCTGGCGTaGACCCGCGCTCCACAGAGG +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHRWSLA*TRAPQR
Trigger: CCTCTGTGGAGCGCGGGTCCACGCCAGACTCCACCT...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACTTCAAGGTGGAGTCTaGCGTGGACCCGCGCTCCAC +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLLQGGV*RGPALH
Trigger: GTGGAGCGCGGGTCCACGCCAGACTCCACCTTGAAG...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTAGCCGGGTTGCCGAGGTaGCTGTGTTTGACGTGCACC +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLAGLPR*LCLTCT
Trigger: GGTGCACGTCAAACACAGCCACCTCGGCAACCCGGC...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACCACGTCATCCTCACTaGCCTCGTGGCTGTTCGGCG +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLPRHPH*PRGCSA
Trigger: CGCCGAACAGCCACGAGGCCAGTGAGGATGACGTGG...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTAGCTTCTCCAGCAGGATaGCGGCATGGAAGGCCTTGC +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLASPAG*RHGRPC
Trigger: GCAAGGCCTTCCATGCCGTCATCCTGCTGGAGAAGC...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTAGCGCCTCAGGATTCTTaGGCAGCATGCCCTGCAGGT +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLAPQDS*AACPAG
Trigger: ACCTGCAGGGCATGCTGCTCAAGAATCCTGAGGCGC...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAAGCGCCTCAGGATTCTTaGGCAGCATGCCCTGCAGGT +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKAPQDS*AACPAG
Trigger: ACCTGCAGGGCATGCTGCTCAAGAATCCTGAGGCGC...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATCTTCCTGGGCACTGGTaGCGTCTGGGCACCTTTCCG +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHLPGHW*RLGTFP
Trigger: CGGAAAGGTGCCCAGACGTCACCAGTGCCCAGGAAG...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATAGCAGACGGGGCACTTaGAGGTACCGCCCATGCCCT +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHSRRGT*RYRPCP
Trigger: AGGGCATGGGCGGTACCTTCAAGTGCCCCGTCTGCT...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAAGCTGCGGGAGAAAGCTaGCTCGCACTCGTGACAGTG +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKAAGES*LALVTV
Trigger: CACTGTCACGAGTGCGAGGCAGCTTTCTCCCGCAGC...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAAAGCAGCAGCTCCAGGTaGAGCTTCAGGTGGGTCTGG +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKSSSSR*SFRWVW
Trigger: CCAGACCCACCTGAAGCTGCACCTGGAGCTGCTGCT...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAATCTCGCCGCAGAAGATaGACTTGTGGGCCTTGGCCG +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKSRRRR*TCGPWP
Trigger: CGGCCAAGGCCCACAAGTGCATCTTCTGCGGCGAGA...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAACGGAGGCGGTGGTTCTaGAGCAACACCTCCATGGTG +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKRRRWF*SNTSMV
Trigger: CACCATGGAGGTGTTGCTGCAGAACCACCGCCTCCG...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACGGAGGCGGTGGTTCTaGAGCAACACCTCCATGGTG +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLRRRWF*SNTSMV
Trigger: CACCATGGAGGTGTTGCTGCAGAACCACCGCCTCCG...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTTTGGCAGGGCCCCGGTaGGTCTGCAGGTGTTCCCGG +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSLAGPR*VCRCSR
Trigger: CCGGGAACACCTGCAGACGCACCGGGGCCCTGCCAA...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATTCTGCAGGGAGCTGGTaGAGGAGAAGCCGCGCTTGC +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHSAGSW*RRSRAC
Trigger: GCAAGCGCGGCTTCTCCTCCACCAGCTCCCTGCAGA...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTATTGGCGTGGGCTTGGTaGATGTGGGCAAGCAGCGTG +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLLAWAW*MWASSV
Trigger: CACGCTGCTTGCCCACATCCACCAAGCCCACGCCAA...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAACGGTGGCTGTCCAGGTaGCAGTACACACCCTCCACA +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKRWLSR*QYTPST
Trigger: TGTGGAGGGTGTGTACTGCCACCTGGACAGCCACCG...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAATCAGGGCTGACGCTGTaGTTACTGGAGTCGGGCTGC +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKSGLTL*LLESGC
Trigger: GCAGCCCGACTCCAGTAACCACAGCGTCAGCCCTGA...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATCTTCAAGGTGGAGTCTaGCGTGGACCCGCGCTCCAC +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHLQGGV*RGPALH
Trigger: GTGGAGCGCGGGTCCACGCCAGACTCCACCTTGAAG...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTAGACGTCGGAGGAGACTaGGCTCTGCTCAGCCTTGGA +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLDVGGD*ALLSLG
Trigger: TCCAAGGCTGAGCAGAGCCCAGTCTCCTCCGACGTC...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAAACGGCCAGGTGCACCTaGATGGACACCTTGGAGTCG +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKTARCT*MDTLES
Trigger: CGACTCCAAGGTGTCCATCCAGGTGCACCTGGCCGT...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTAACGGCCAGGTGCACCTaGATGGACACCTTGGAGTCG +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLTARCT*MDTLES
Trigger: CGACTCCAAGGTGTCCATCCAGGTGCACCTGGCCGT...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAACAGAAGATGCACTTGTaGGCCTTGGCCGGGTTGCCG +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKQKMHL*ALAGLP
Trigger: CGGCAACCCGGCCAAGGCCCACAAGTGCATCTTCTG...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACAGAAGATGCACTTGTaGGCCTTGGCCGGGTTGCCG +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLQKMHL*ALAGLP
Trigger: CGGCAACCCGGCCAAGGCCCACAAGTGCATCTTCTG...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAAAGCTTCTGCAGTCCCTaGCCATTGGGGGAGGAGGCA +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKSFCSP*PLGEEA
Trigger: TGCCTCCTCCCCCAATGGCCAGGGACTGCAGAAGCT...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATCACCCACCTGTCCATTaGCACTCCGGGCCATGCAGC +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHHPPVH*HSGPCS
Trigger: GCTGCATGGCCCGGAGTGCCAATGGACAGGTGGGTG...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAAGGCTCCTCTTGTGTTTaGAGAGGCGGCTGCAGAAGG +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKGSSCV*RGGCRR
Trigger: CCTTCTGCAGCCGCCTCTTCAAACACAAGAGGAGCC...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTAGCTGCCTCGCACTCGTaGCAGTGGTACTTCTTGTCG +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLAASHS*QWYFLS
Trigger: CGACAAGAAGTACCACTGTCACGAGTGCGAGGCAGC...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATGCACAGGGTCAGGGCTaGCGCTGTGGTTACTGGAGT +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHAQGQG*RCGYWS
Trigger: ACTCCAGTAACCACAGCGTCAGCCCTGACCCTGTGC...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTATGTTGCCAAACTGCATaGCGGGGTAGGCGTGGCTCT +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLCCQTA*RGRRGS
Trigger: AGAGCCACGCCTACCCCGTCATGCAGTTTGGCAACA...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTTTCTGCCTTCTTGCGTaGGCCGTCGTCCTCGCCGGG +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSFCLLA*AVVLAG
Trigger: CCCGGCGAGGACGACGGCTCACGCAAGAAGGCAGAA...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATTCACCTTGTGCTCGGTaGGTGTCAGCAGCGAGGGGA +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHSPCAR*VSAARG
Trigger: TCCCCTCGCTGCTGACACTCACCGAGCACAAGGTGA...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTATGGAGGGTGAGCACGTaGTTCTCCAGCTCCTCTGTC +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLWRVST*FSSSSV
Trigger: GACAGAGGAGCTGGAGAAGCACGTGCTCACCCTCCA...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTATCCACAGAGGAGAACTaGTCAGGGCACATGGGGCAC +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLSTEEN*SGHMGH
Trigger: GTGCCCCATGTGCCCTGAGCAGTTCTCCTCTGTGGA...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAAGCATTGGGGCCACAGTaGGAGACTCGAATGTGCTCC +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKALGPQ*ETRMCS
Trigger: GGAGCACATTCGAGTCTCGCACTGTGGCCCCAATGC...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAATGCTTCACGGCCAGGTaGACCTGGATGGACACCTTG +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKCFTAR*TWMDTL
Trigger: CAAGGTGTCCATCCAGGTGCACCTGGCCGTGAAGCA...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTATGTTTGACGTGCACCTaGAGGTCAGCCTCCTTGCGG +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLCLTCT*RSASLR
Trigger: CCGCAAGGAGGCTGACCTGCAGGTGCACGTCAAACA...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTAGCGTCAAACACGCAGTaGTTCTCCCGCAGGTGCTTC +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLASNTQ*FSRRCF
Trigger: GAAGCACCTGCGGGAGAAGCACTGCGTGTTTGACGC...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTCAGGTCGGCGGGCTCTaGCTTCTTGGTGGAGGTGGG +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSQVGGL*LLGGGG
Trigger: CCCACCTCCACCAAGAAGGCAGAGCCCGCCGACCTG...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACTCCATGGTGTAGGCTaGACCGCAGATGTCACAGCC +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLLHGVG*TADVTA
Trigger: GGCTGTGACATCTGCGGTGCAGCCTACACCATGGAG...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAACTGTGGGTCACCTTGTaGTCGGTGAGTGTCAGCAGC +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKLWVTL*SVSVSS
Trigger: GCTGCTGACACTCACCGAGCACAAGGTGACCCACAG...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACTGTGGGTCACCTTGTaGTCGGTGAGTGTCAGCAGC +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLLWVTL*SVSVSS
Trigger: GCTGCTGACACTCACCGAGCACAAGGTGACCCACAG...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTATGCAGATGCGACAGGTaGCCGTGTCCAGACTCTTGC +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLCRCDR*PCPDSC
Trigger: GCAAGAGTCTGGACACGGGCACCTGTCGCATCTGCA...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATTTGTGGGCCTGCATGTaGCTCTGCAGGGAGCTGGTG +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHLWACM*LCRELV
Trigger: CACCAGCTCCCTGCAGAGCCACATGCAGGCCCACAA...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTATGGGCTTGGTGGATGTaGGCAAGCAGCGTGCTCTCA +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLWAWWM*ASSVLS
Trigger: TGAGAGCACGCTGCTTGCCCACATCCACCAAGCCCA...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATTTGGCGTGGGCTTGGTaGATGTGGGCAAGCAGCGTG +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHLAWAW*MWASSV
Trigger: CACGCTGCTTGCCCACATCCACCAAGCCCACGCCAA...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATTGGTTGGCGTGGGCTTaGTGGATGTGGGCAAGCAGC +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHWLAWA*WMWASS
Trigger: GCTGCTTGCCCACATCCACCAAGCCCACGCCAACCA...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAACTTCTGCCCCCTCAGTaGCTTCAAGGTGGAGTCTGG +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKLLPPQ*LQGGVW
Trigger: CCAGACTCCACCTTGAAGCCACTGAGGGGGCAGAAG...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATGACGTCGGAGGAGACTaGGCTCTGCTCAGCCTTGGA +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHDVGGD*ALLSLG
Trigger: TCCAAGGCTGAGCAGAGCCCAGTCTCCTCCGACGTC...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAATGGTCCACCTGCATGTaGCTCTCCAGGTCCTCAGCA +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKWSTCM*LSRSSA
Trigger: TGCTGAGGACCTGGAGAGCCACATGCAGGTGGACCA...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAAGGGCCCACTGGTCTCTaGTGTAAGATCACGGTGGTC +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKGPTGL*CKITVV
Trigger: GACCACCGTGATCTTACACCAGAGACCAGTGGGCCC...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTGGCACTGGTGACGTCTaGGCACCTTTCCGGGGCCCA +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSGTGDV*APFRGP
Trigger: TGGGCCCCGGAAAGGTGCCCAGACGTCACCAGTGCC...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACTGTGCTCAATGAGGTaGCAGAGGAGCTTGGCTGGG +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLLCSMR*QRSLAG
Trigger: CCCAGCCAAGCTCCTCTGCCACCTCATTGAGCACAG...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATTCTTCAGGTGGATCTTaGGGTGGTCGCTGCGGGAGA +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHSSGGS*GGRCGR
Trigger: TCTCCCGCAGCGACCACCTCAAGATCCACCTGAAGA...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATTGTTGCCAAACTGCATaGCGGGGTAGGCGTGGCTCT +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHCCQTA*RGRRGS
Trigger: AGAGCCACGCCTACCCCGTCATGCAGTTTGGCAACA...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAAGCTCCTGCAGGCTGTTaGTGTCAGCAAACATCTCGG +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKAPAGC*CQQTSR
Trigger: CCGAGATGTTTGCTGACATCAACAGCCTGCAGGAGC...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTATGCAGGAGGGACTCCTaGGAGTCGAAGTCCTCTTTG +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLCRRDS*ESKSSL
Trigger: CAAAGAGGACTTCGACTCTCAGGAGTCCCTCCTGCA...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAATGCAGGAGGGACTCCTaGGAGTCGAAGTCCTCTTTG +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKCRRDS*ESKSSL
Trigger: CAAAGAGGACTTCGACTCTCAGGAGTCCCTCCTGCA...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATGCCATACATGGGCTCTaGTGCGTCCACGTCATCCTC +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHAIHGL*CVHVIL
Trigger: GAGGATGACGTGGACGCATCAGAGCCCATGTATGGC...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAATTCTTCTTGTGGGCCTaGATGTGGCTCTGCAGGGAG +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKFFLWA*MWLCRE
Trigger: CTCCCTGCAGAGCCACATGCAGGCCCACAAGAAGAA...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTGCCTTCTCTGAGAGCTaGGGGTGGAGGGTGAGCACG +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSAFSES*GWRVST
Trigger: CGTGCTCACCCTCCACCCGCAGCTCTCAGAGAAGGC...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATTCCACAGAGGAGAACTaGTCAGGGCACATGGGGCAC +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHSTEEN*SGHMGH
Trigger: GTGCCCCATGTGCCCTGAGCAGTTCTCCTCTGTGGA...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATGCATTGGGGCCACAGTaGGAGACTCGAATGTGCTCC +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHALGPQ*ETRMCS
Trigger: GGAGCACATTCGAGTCTCGCACTGTGGCCCCAATGC...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAACTCCCCACACTGCAATaGGCCTGTTGGATGTGCTCT +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKLPTLQ*ACWMCS
Trigger: AGAGCACATCCAACAGGCGCATTGCAGTGTGGGGAG...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACTCCCCACACTGCAATaGGCCTGTTGGATGTGCTCT +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLLPTLQ*ACWMCS
Trigger: AGAGCACATCCAACAGGCGCATTGCAGTGTGGGGAG...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAACAGCCTTGGACTTCTTaGTGTGTGCCAGCGGGATGT +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKQPWTS*CVPAGC
Trigger: ACATCCCGCTGGCACACAGCAAGAAGTCCAAGGCTG...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTATCCACCGAGGAGAACTaGTTGTCACAGCTCTCGCAC +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLSTEEN*LSQLSH
Trigger: GTGCGAGAGCTGTGACAAGCAGTTCTCCTCGGTGGA...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATTGCTTCACGGCCAGGTaGACCTGGATGGACACCTTG +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHCFTAR*TWMDTL
Trigger: CAAGGTGTCCATCCAGGTGCACCTGGCCGTGAAGCA...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTATTCTTCTCGTTGCTGTaGTTCACGGCCAGGTGCACC +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLFFSLL*FTARCT
Trigger: GGTGCACCTGGCCGTGAAGCACAGCAACGAGAAGAA...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATTGGCTGTGTTTGACGTaGACCTGCAGGTCAGCCTCC +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHWLCLT*TCRSAS
Trigger: GGAGGCTGACCTGCAGGTGCACGTCAAACACAGCCA...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATTGCTTCTCCCGCAGGTaGTTCTCCAGCAGGATGACG +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHCFSRR*FSSRMT
Trigger: CGTCATCCTGCTGGAGAAGCACCTGCGGGAGAAGCA...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATGCGTCAAACACGCAGTaGTTCTCCCGCAGGTGCTTC +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHASNTQ*FSRRCF
Trigger: GAAGCACCTGCGGGAGAAGCACTGCGTGTTTGACGC...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACCGTGTCCAGACTCTTaGTGTGGGTCACCTTGTGCT +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLPCPDS*CGSPCA
Trigger: AGCACAAGGTGACCCACAGCAAGAGTCTGGACACGG...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTAGTGGCATTTTGCAGATaGGACAGGTGCCCGTGTCCA +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLVAFCR*DRCPCP
Trigger: TGGACACGGGCACCTGTCGCATCTGCAAAATGCCAC...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAATCTGCAGTGGCATTTTaGAGATGCGACAGGTGCCCG +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKSAVAF*RCDRCP
Trigger: CGGGCACCTGTCGCATCTGCAAAATGCCACTGCAGA...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTAGTCGAGGTGACAGTCTaGATACAGACCACACAGCGG +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLVEVTV*IQTTQR
Trigger: CCGCTGTGTGGTCTGTATGCAGACTGTCACCTCGAC...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTCAGGCCTCCTGCTGCTaGCACAGAGGAATCCCAGGC +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSQASCC*HRGIPG
Trigger: GCCTGGGATTCCTCTGTGGCAGCAGCAGGAGGCCTG...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109655.9
CDS-3UTR CCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAACTTCCAGCGCACGGCTaGTTTTCCGATCACACTCTG +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKLPAHG*FSDHTL
Trigger: CAGAGTGTGATCGGAAAACCAGCCGTGCGCTGGAAG...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
CDS-3UTR CCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACTTCCAGCGCACGGCTaGTTTTCCGATCACACTCTG +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLLPAHG*FSDHTL
Trigger: CAGAGTGTGATCGGAAAACCAGCCGTGCGCTGGAAG...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
CDS-3UTR CCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAAAGGTGGATCTTGAGGTaGTCGCTGCGGGAGAAAGCT +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKRWILR*SLREKA
Trigger: AGCTTTCTCCCGCAGCGACCACCTCAAGATCCACCT...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAACTGTGGGTCTTCAGGTaGATCTTGAGGTGGTCGCTG +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKLWVFR*ILRWSL
Trigger: CAGCGACCACCTCAAGATCCACCTGAAGACCCACAG...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTAGGCTTGCTGGAGCTGTaGGTCTTCAGGTGGATCTTG +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLGLLEL*VFRWIL
Trigger: CAAGATCCACCTGAAGACCCACAGCTCCAGCAAGCC...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATTGGGCTTGGTGGATGTaGGCAAGCAGCGTGCTCTCA +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHWAWWM*ASSVLS
Trigger: TGAGAGCACGCTGCTTGCCCACATCCACCAAGCCCA...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTCTTCAAGGTGGAGTCTaGCGTGGACCCGCGCTCCAC +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSLQGGV*RGPALH
Trigger: GTGGAGCGCGGGTCCACGCCAGACTCCACCTTGAAG...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATCTTCTGCCCCCTCAGTaGCTTCAAGGTGGAGTCTGG +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHLLPPQ*LQGGVW
Trigger: CCAGACTCCACCTTGAAGCCACTGAGGGGGCAGAAG...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAACAGGAGACTCCAGCTTaGTGCTCCCCACACTGCAAT +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKQETPA*CSPHCN
Trigger: ATTGCAGTGTGGGGAGCACCAAGCTGGAGTCTCCTG...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAAAAGTCCTCTTTGCACTaGGGGCAGGCCTGTTTCCGA +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKKSSLH*GQACFR
Trigger: TCGGAAACAGGCCTGCCCCCAGTGCAAAGAGGACTT...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTGCCGGGTTGCCGAGGTaGCTGTGTTTGACGTGCACC +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSAGLPR*LCLTCT
Trigger: GGTGCACGTCAAACACAGCCACCTCGGCAACCCGGC...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATGCAGCAACACCTCCATaGTGTAGGCTGCACCGCAGA +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHAATPP*CRLHRR
Trigger: TCTGCGGTGCAGCCTACACCATGGAGGTGTTGCTGC...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTCACCCACCTGTCCATTaGCACTCCGGGCCATGCAGC +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSHPPVH*HSGPCS
Trigger: GCTGCATGGCCCGGAGTGCCAATGGACAGGTGGGTG...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAAGGTGTAAGATCACGGTaGTCCACCTGCATGTGGCTC +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKGVRSR*STCMWL
Trigger: GAGCCACATGCAGGTGGACCACCGTGATCTTACACC...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTAGGTGTAAGATCACGGTaGTCCACCTGCATGTGGCTC +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLGVRSR*STCMWL
Trigger: GAGCCACATGCAGGTGGACCACCGTGATCTTACACC...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTAGCAGAGGAGCTTGGCTaGGGAGTCGAACATCTGGTT +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLAEELG*GVEHLV
Trigger: AACCAGATGTTCGACTCCCCAGCCAAGCTCCTCTGC...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATGGTGGCAGAGGAGCTTaGCTGGGGAGTCGAACATCT +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHGGRGA*LGSRTS
Trigger: AGATGTTCGACTCCCCAGCCAAGCTCCTCTGCCACC...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATTGCAGAAGGTGCACTTaGACGGCAGCTTGTCGCTGT +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHCRRCT*TAACRC
Trigger: ACAGCGACAAGCTGCCGTTCAAGTGCACCTTCTGCA...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAAAGGAGTAGACCTCCATaGAGGACTGTGTGGGCTGAA +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKRSRPP*RTVWAE
Trigger: TTCAGCCCACACAGTCCTTCATGGAGGTCTACTCCT...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTAAGGAGTAGACCTCCATaGAGGACTGTGTGGGCTGAA +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLRSRPP*RTVWAE
Trigger: TTCAGCCCACACAGTCCTTCATGGAGGTCTACTCCT...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATAACTTGAGGTCGCACTaGTTGCAGGGGTACTCGCCA +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHNLRSH*LQGYSP
Trigger: TGGCGAGTACCCCTGCAATCAGTGCGACCTCAAGTT...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACGAAGTTGGAGAACTTaGGGTCGCACTGATTGCAGG +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLRSWRT*GRTDCR
Trigger: CCTGCAATCAGTGCGACCTCAAGTTCTCCAACTTCG...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTCGAGGTGGCTGTGTTTaGCGTGCACCTGCAGGTCAG +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSRGGCV*RAPAGQ
Trigger: CTGACCTGCAGGTGCACGTCAAACACAGCCACCTCG...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAAGCCAGCTTCTGCATGTaGAAGGTGCCATGGATCTTG +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKASFCM*KVPWIL
Trigger: CAAGATCCATGGCACCTTTCACATGCAGAAGCTGGC...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTATGCTACGGAACTCTTTaGGGCACAGGGCGCATTTGT +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLCYGTL*GTGRIC
Trigger: ACAAATGCGCCCTGTGCCTCAAAGAGTTCCGTAGCA...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAATTGGCGACGTGGATCTaGATCTCTCTCTCGTTCTCG +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKLATWI*ISLSFS
Trigger: CGAGAACGAGAGAGAGATTCAGATCCACGTCGCCAA...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATTTCTTGTCGCCCGTGTaGAGCTTGATGTGCCGGTCT +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHFLSPV*SLMCRS
Trigger: AGACCGGCACATCAAGCTGCACACGGGCGACAAGAA...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTGCTGCGGGAGAAAGCTaGCTCGCACTCGTGACAGTG +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSAAGES*LALVTV
Trigger: CACTGTCACGAGTGCGAGGCAGCTTTCTCCCGCAGC...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATTTCTTCTTGTGGGCCTaGATGTGGCTCTGCAGGGAG +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHFFLWA*MWLCRE
Trigger: CTCCCTGCAGAGCCACATGCAGGCCCACAAGAAGAA...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAAGGACTTCTTGCTGTGTaGCAGCGGGATGTTCTTGTG +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKGLLAV*QRDVLV
Trigger: CACAAGAACATCCCGCTGGCACACAGCAAGAAGTCC...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTAGGACTTCTTGCTGTGTaGCAGCGGGATGTTCTTGTG +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLGLLAV*QRDVLV
Trigger: CACAAGAACATCCCGCTGGCACACAGCAAGAAGTCC...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATAGTCGAAGTCCTCTTTaGACTGGGGGCAGGCCTGTT +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHSRSPL*TGGRPV
Trigger: AACAGGCCTGCCCCCAGTGCAAAGAGGACTTCGACT...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAACCTCCTGACACAGCGTaGAGTGGTATAGCACAAAGG +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKPPDTA*SGIAQR
Trigger: CCTTTGTGCTATACCACTGCACGCTGTGTCAGGAGG...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACCTCCTGACACAGCGTaGAGTGGTATAGCACAAAGG +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLPPDTA*SGIAQR
Trigger: CCTTTGTGCTATACCACTGCACGCTGTGTCAGGAGG...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATTTCTTCTCGTTGCTGTaGTTCACGGCCAGGTGCACC +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHFFSLL*FTARCT
Trigger: GGTGCACCTGGCCGTGAAGCACAGCAACGAGAAGAA...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACCCAGTTGCAGGCTGTaGAGCGGTACATCTTCTTCT +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLPSCRL*SGTSSS
Trigger: AGAAGAAGATGTACCGCTGCACAGCCTGCAACTGGG...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATCCGTGTCCAGACTCTTaGTGTGGGTCACCTTGTGCT +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHPCPDS*CGSPCA
Trigger: AGCACAAGGTGACCCACAGCAAGAGTCTGGACACGG...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATGTGGCATTTTGCAGATaGGACAGGTGCCCGTGTCCA +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHVAFCR*DRCPCP
Trigger: TGGACACGGGCACCTGTCGCATCTGCAAAATGCCAC...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATTCTGCAGTGGCATTTTaGAGATGCGACAGGTGCCCG +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHSAVAF*RCDRCP
Trigger: CGGGCACCTGTCGCATCTGCAAAATGCCACTGCAGA...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAATTCCGTAAGTCGGGGTaGATCTGGCAGTGCTCAATG +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKFRKSG*IWQCSM
Trigger: CATTGAGCACTGCCAGATGCACCCCGACTTACGGAA...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTATTGTCCTCCTGCCCGTaGACGGCAAAGATATGCTGT +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLLSSCP*TAKICC
Trigger: ACAGCATATCTTTGCCGTGCACGGGCAGGAGGACAA...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAAGGCAGCTTGTCGCTGTaGATCTGTTCATGCCTCTTC +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKGSLSL*ICSCLF
Trigger: GAAGAGGCATGAACAGATCCACAGCGACAAGCTGCC...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATGGCTTGCTGGAGCTGTaGGTCTTCAGGTGGATCTTG +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHGLLEL*VFRWIL
Trigger: CAAGATCCACCTGAAGACCCACAGCTCCAGCAAGCC...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTTTGTGGGCCTGCATGTaGCTCTGCAGGGAGCTGGTG +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSLWACM*LCRELV
Trigger: CACCAGCTCCCTGCAGAGCCACATGCAGGCCCACAA...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAATCCAGCTCCTCTGTCTaGCTAAAGGTATCCTCGCAG +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKSSSSV*LKVSSQ
Trigger: CTGCGAGGATACCTTTAGCCAGACAGAGGAGCTGGA...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTTCTGAGAGCTGCGGGTaGAGGGTGAGCACGTGCTTC +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSSESCG*RVSTCF
Trigger: GAAGCACGTGCTCACCCTCCACCCGCAGCTCTCAGA...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTTGGTTGGCGTGGGCTTaGTGGATGTGGGCAAGCAGC +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSWLAWA*WMWASS
Trigger: GCTGCTTGCCCACATCCACCAAGCCCACGCCAACCA...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATTGTTTCTGGTTGGCGTaGGCTTGGTGGATGTGGGCA +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHCFWLA*AWWMWA
Trigger: TGCCCACATCCACCAAGCCCACGCCAACCAGAAACA...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTTCAGTGGCTTCAAGGTaGAGTCTGGCGTGGACCCGC +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSSVASR*SLAWTR
Trigger: GCGGGTCCACGCCAGACTCCACCTTGAAGCCACTGA...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATAGGTGCAGCTTCAGGTaGGTCTGGAAGCTCTCGAAG +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHRCSFR*VWKLSK
Trigger: CTTCGAGAGCTTCCAGACCCACCTGAAGCTGCACCT...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATCCTGGATGGACACCTTaGAGTCGAAGACCTCCTGAC +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHPGWTP*SRRPPD
Trigger: GTCAGGAGGTCTTCGACTCCAAGGTGTCCATCCAGG...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATAGCAGGATGACGGCATaGAAGGCCTTGCTGCAGAAC +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHSRMTA*KALLQN
Trigger: GTTCTGCAGCAAGGCCTTCCATGCCGTCATCCTGCT...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAAAAGTCGGGGTGCATCTaGCAGTGCTCAATGAACTCC +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKKSGCI*QCSMNS
Trigger: GGAGTTCATTGAGCACTGCCAGATGCACCCCGACTT...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTAGCTTCTGCAGTCCCTaGCCATTGGGGGAGGAGGCA +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSSFCSP*PLGEEA
Trigger: TGCCTCCTCCCCCAATGGCCAGGGACTGCAGAAGCT...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATGCAGAGGAGCTTGGCTaGGGAGTCGAACATCTGGTT +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHAEELG*GVEHLV
Trigger: AACCAGATGTTCGACTCCCCAGCCAAGCTCCTCTGC...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAATGCAGCTTGTTGGCCTaGACGAAGACTGTGAAGCAG +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKCSLLA*TKTVKQ
Trigger: CTGCTTCACAGTCTTCGTCCAGGCCAACAAGCTGCA...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTATGCTGGCTCATCGTGTaGTTCTGCAACTCTGTCTGG +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLCWLIV*FCNSVW
Trigger: CCAGACAGAGTTGCAGAACCACACGATGAGCCAGCA...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATAGTAGCTCAGGCGGATaGAGGACTTGTCGCAGAACT +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHSSSGG*RTCRRT
Trigger: AGTTCTGCGACAAGTCCTTCATCCGCCTGAGCTACT...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTGGCTCCTCTTGTGTTTaGAGAGGCGGCTGCAGAAGG +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSGSSCV*RGGCRR
Trigger: CCTTCTGCAGCCGCCTCTTCAAACACAAGAGGAGCC...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTGCTGCCTCGCACTCGTaGCAGTGGTACTTCTTGTCG +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSAASHS*QWYFLS
Trigger: CGACAAGAAGTACCACTGTCACGAGTGCGAGGCAGC...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTTGCACACGCTGCACTTaGACGGCTTGCTGGAGCTGT +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSCTRCT*TACWSC
Trigger: ACAGCTCCAGCAAGCCGTTCAAGTGCAGCGTGTGCA...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTTGTTGCCAAACTGCATaGCGGGGTAGGCGTGGCTCT +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSCCQTA*RGRRGS
Trigger: AGAGCCACGCCTACCCCGTCATGCAGTTTGGCAACA...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATTCTGGCAGTGCTCAATaGACTCCTCCTCACTCTGCA +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHSGSAQ*TPPHSA
Trigger: TGCAGAGTGAGGAGGAGTTCATTGAGCACTGCCAGA...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATTTGGCGACGTGGATCTaGATCTCTCTCTCGTTCTCG +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHLATWI*ISLSFS
Trigger: CGAGAACGAGAGAGAGATTCAGATCCACGTCGCCAA...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTGTGGTCCGTCAGGTCTaGCAGAGACTCGAAGTCCTG +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSVVRQV*QRLEVL
Trigger: CAGGACTTCGAGTCTCTGGCAGACCTGACGGACCAC...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
CDS-3UTR GCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACCATCTCCTATCATCTaGGTAGGTGACGCAACATCC +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLPSPII*VGDATS
Trigger: GGATGTTGCGTCACCTACGCAGATGATAGGAGATGG...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
CDS-3UTR GCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTGTGTGCAGCTTGATGTaGCGGTCTCGGCTCCTCTTG +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSVCSLM*RSRLLL
Trigger: CAAGAGGAGCCGAGACCGGCACATCAAGCTGCACAC...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTATGTGGGCAAGCAGCGTaGTCTCATCAACAAAGACCT +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLCGQAA*SHQQRP
Trigger: AGGTCTTTGTTGATGAGAGCACGCTGCTTGCCCACA...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTAACTCGAATGTGCTCCTaGAGGCTGTTGATGTCAGCA +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLTRMCS*RLLMSA
Trigger: TGCTGACATCAACAGCCTGCAGGAGCACATTCGAGT...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATTGCGAGACTCGAATGTaGTCCTGCAGGCTGTTGATG +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHCETRM*SCRLLM
Trigger: CATCAACAGCCTGCAGGAGCACATTCGAGTCTCGCA...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATCCCAGTTGCAGGCTGTaGAGCGGTACATCTTCTTCT +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHPSCRL*SGTSSS
Trigger: AGAAGAAGATGTACCGCTGCACAGCCTGCAACTGGG...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTTGCTTCTCCCGCAGGTaGTTCTCCAGCAGGATGACG +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSCFSRR*FSSRMT
Trigger: CGTCATCCTGCTGGAGAAGCACCTGCGGGAGAAGCA...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTTGCAGATGCGACAGGTaGCCGTGTCCAGACTCTTGC +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSCRCDR*PCPDSC
Trigger: GCAAGAGTCTGGACACGGGCACCTGTCGCATCTGCA...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATGGGTGCATCTGGCAGTaGTCAATGAACTCCTCCTCA +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHGCIWQ*SMNSSS
Trigger: TGAGGAGGAGTTCATTGAGCACTGCCAGATGCACCC...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATTTCCGTAAGTCGGGGTaGATCTGGCAGTGCTCAATG +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHFRKSG*IWQCSM
Trigger: CATTGAGCACTGCCAGATGCACCCCGACTTACGGAA...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTAGCAAAGATATGCTGTTaGAGCTTGTTGGCCTGGACG +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLAKICC*SLLAWT
Trigger: CGTCCAGGCCAACAAGCTGCAACAGCATATCTTTGC...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATTTGTCCTCCTGCCCGTaGACGGCAAAGATATGCTGT +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHLSSCP*TAKICC
Trigger: ACAGCATATCTTTGCCGTGCACGGGCAGGAGGACAA...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATGGCAGCTTGTCGCTGTaGATCTGTTCATGCCTCTTC +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHGSLSL*ICSCLF
Trigger: GAAGAGGCATGAACAGATCCACAGCGACAAGCTGCC...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATTCCTTGTTCTTCTTGTaGGCCTGCATGTGGCTCTGC +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHSLFFL*ACMWLC
Trigger: GCAGAGCCACATGCAGGCCCACAAGAAGAACAAGGA...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATTCCAGCTCCTCTGTCTaGCTAAAGGTATCCTCGCAG +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHSSSSV*LKVSSQ
Trigger: CTGCGAGGATACCTTTAGCCAGACAGAGGAGCTGGA...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTAACTTGTGTTTCTGGTTaGCGTGGGCTTGGTGGATGT +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLTCVSG*RGLGGC
Trigger: ACATCCACCAAGCCCACGCCAACCAGAAACACAAGT...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAAACTTGTGTTTCTGGTTaGCGTGGGCTTGGTGGATGT +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKTCVSG*RGLGGC
Trigger: ACATCCACCAAGCCCACGCCAACCAGAAACACAAGT...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTGGGCACTTGTGTTTCTaGTTGGCGTGGGCTTGGTGG +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSGHLCF*LAWAWW
Trigger: CCACCAAGCCCACGCCAACCAGAAACACAAGTGCCC...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTTGGTCCACCTGCATGTaGCTCTCCAGGTCCTCAGCA +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSWSTCM*LSRSSA
Trigger: TGCTGAGGACCTGGAGAGCCACATGCAGGTGGACCA...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTGGGCCCACTGGTCTCTaGTGTAAGATCACGGTGGTC +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSGPTGL*CKITVV
Trigger: GACCACCGTGATCTTACACCAGAGACCAGTGGGCCC...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTATGGCACTTGATACACTaGTACGTCTTCTTCCTGGGC +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLWHLIH*YVFFLG
Trigger: GCCCAGGAAGAAGACGTACCAGTGTATCAAGTGCCA...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAATGGCACTTGATACACTaGTACGTCTTCTTCCTGGGC +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKWHLIH*YVFFLG
Trigger: GCCCAGGAAGAAGACGTACCAGTGTATCAAGTGCCA...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTGGTGGCAGAGGAGCTTaGCTGGGGAGTCGAACATCT +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSGGRGA*LGSRTS
Trigger: AGATGTTCGACTCCCCAGCCAAGCTCCTCTGCCACC...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATTGCAGCTTGTTGGCCTaGACGAAGACTGTGAAGCAG +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHCSLLA*TKTVKQ
Trigger: CTGCTTCACAGTCTTCGTCCAGGCCAACAAGCTGCA...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTATCATTTCTCTCCTCTTaGCTTGTCACGCTGTTCCTG +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLSFLSS*LVTLFL
Trigger: CAGGAACAGCGTGACAAGTCAAGAGGAGAGAAATGA...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
CDS-3UTR TCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATTATCATCTGCGTAGGTaGCGCAACATCCTTGCTGGA +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHYHLRR*RNILAG
Trigger: TCCAGCAAGGATGTTGCGTCACCTACGCAGATGATA...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
CDS-3UTR TCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTTGCAGAAGGTGCACTTaGACGGCAGCTTGTCGCTGT +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSCRRCT*TAACRC
Trigger: ACAGCGACAAGCTGCCGTTCAAGTGCACCTTCTGCA...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTAAGGACTGTGTGGGCTaGACAACAGGAGACTCCAGC +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSKDCVG*TTGDSS
Trigger: GCTGGAGTCTCCTGTTGTTCAGCCCACACAGTCCTT...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTTGCAGGAGGGACTCCTaGGAGTCGAAGTCCTCTTTG +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSCRRDS*ESKSSL
Trigger: CAAAGAGGACTTCGACTCTCAGGAGTCCCTCCTGCA...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTGAGTCGAAGACCTCCTaGCACAGCGTGCAGTGGTAT +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSESKTS*HSVQWY
Trigger: ATACCACTGCACGCTGTGTCAGGAGGTCTTCGACTC...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAAACGTCATCTGGCACTTaGTACACTGGTACGTCTTCT +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKTSSGT*YTGTSS
Trigger: AGAAGACGTACCAGTGTATCAAGTGCCAGATGACGT...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTAACGTCATCTGGCACTTaGTACACTGGTACGTCTTCT +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLTSSGT*YTGTSS
Trigger: AGAAGACGTACCAGTGTATCAAGTGCCAGATGACGT...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTCTCCCCACACTGCAATaGGCCTGTTGGATGTGCTCT +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSLPTLQ*ACWMCS
Trigger: AGAGCACATCCAACAGGCGCATTGCAGTGTGGGGAG...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATACATCTTCTTCTCGTTaGTGTGCTTCACGGCCAGGT +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHTSSSR*CASRPG
Trigger: ACCTGGCCGTGAAGCACAGCAACGAGAAGAAGATGT...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAAAACTCCTCCTCACTCTaGAGTGGCATTTTGCAGATG +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKNSSSL*SGILQM
Trigger: CATCTGCAAAATGCCACTGCAGAGTGAGGAGGAGTT...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATGCAAAGATATGCTGTTaGAGCTTGTTGGCCTGGACG +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHAKICC*SLLAWT
Trigger: CGTCCAGGCCAACAAGCTGCAACAGCATATCTTTGC...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTTTTCCGATCACACTCTaGCTCTCCTTCCAGGCCTCC +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSFPITL*LSFQAS
Trigger: GGAGGCCTGGAAGGAGAGCCAGAGTGTGATCGGAAA...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
CDS-3UTR CCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTAGGTGGATCTTGAGGTaGTCGCTGCGGGAGAAAGCT +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSRWILR*SLREKA
Trigger: AGCTTTCTCCCGCAGCGACCACCTCAAGATCCACCT...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTCTGTGGGTCTTCAGGTaGATCTTGAGGTGGTCGCTG +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSLWVFR*ILRWSL
Trigger: CAGCGACCACCTCAAGATCCACCTGAAGACCCACAG...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATCTTCCTTCTCCGACTTaGCCAGGTGTTCCTTGTTCT +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHLPSPT*PGVPCS
Trigger: AGAACAAGGAACACCTGGCCAAGTCGGAGAAGGAAG...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTAGGTGCAGCTTCAGGTaGGTCTGGAAGCTCTCGAAG +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSRCSFR*VWKLSK
Trigger: CTTCGAGAGCTTCCAGACCCACCTGAAGCTGCACCT...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTCCTGGATGGACACCTTaGAGTCGAAGACCTCCTGAC +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSPGWTP*SRRPPD
Trigger: GTCAGGAGGTCTTCGACTCCAAGGTGTCCATCCAGG...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTCCAGGTGCACCTGGATaGACACCTTGGAGTCGAAGA +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSPGAPG*TPWSRR
Trigger: TCTTCGACTCCAAGGTGTCCATCCAGGTGCACCTGG...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATCCTCGATCATGTGGTTaGCGACGTGGATCTGAATCT +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHPRSCG*RRGSES
Trigger: AGATTCAGATCCACGTCGCCAACCACATGATCGAGG...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTAGGGGAGTCGAACATCTaGTTGCACAGTTTACACTCA +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLGESNI*LHSLHS
Trigger: TGAGTGTAAACTGTGCAACCAGATGTTCGACTCCCC...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTGCAGAGGAGCTTGGCTaGGGAGTCGAACATCTGGTT +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSAEELG*GVEHLV
Trigger: AACCAGATGTTCGACTCCCCAGCCAAGCTCCTCTGC...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTAGTAGCTCAGGCGGATaGAGGACTTGTCGCAGAACT +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSSSSGG*RTCRRT
Trigger: AGTTCTGCGACAAGTCCTTCATCCGCCTGAGCTACT...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTTCTGGCAGTGCTCAATaGACTCCTCCTCACTCTGCA +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSSGSAQ*TPPHSA
Trigger: TGCAGAGTGAGGAGGAGTTCATTGAGCACTGCCAGA...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTGCCAGCTTCTGCATGTaGAAGGTGCCATGGATCTTG +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSASFCM*KVPWIL
Trigger: CAAGATCCATGGCACCTTTCACATGCAGAAGCTGGC...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTTTGGCGACGTGGATCTaGATCTCTCTCTCGTTCTCG +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSLATWI*ISLSFS
Trigger: CGAGAACGAGAGAGAGATTCAGATCCACGTCGCCAA...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAACCATGGAGCACTGGTTaGAGAAGAAAGCATTATTCC +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKPWSTG*RRKHYS
Trigger: GGAATAATGCTTTCTTCTGCAACCAGTGCTCCATGG...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTTCCTTGTTCTTCTTGTaGGCCTGCATGTGGCTCTGC +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSSLFFL*ACMWLC
Trigger: GCAGAGCCACATGCAGGCCCACAAGAAGAACAAGGA...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTTGTAGAGCGTGGGCATaGAGTCAAGGCAGATCTGAC +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSCRAWA*SQGRSD
Trigger: GTCAGATCTGCCTTGACTCCATGCCCACGCTCTACA...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTAAAGCCCATGGAGCACTaGTTGCAGAAGAAAGCATTA +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLKPMEH*LQKKAL
Trigger: TAATGCTTTCTTCTGCAACCAGTGCTCCATGGGCTT...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTTGTCACAGCCATACATaGGCTCTGATGCGTCCACGT +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSCHSHT*ALMRPR
Trigger: ACGTGGACGCATCAGAGCCCATGTATGGCTGTGACA...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTAAGTCGGGGTGCATCTaGCAGTGCTCAATGAACTCC +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSKSGCI*QCSMNS
Trigger: GGAGTTCATTGAGCACTGCCAGATGCACCCCGACTT...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATGGGGAGTCGAACATCTaGTTGCACAGTTTACACTCA +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHGESNI*LHSLHS
Trigger: TGAGTGTAAACTGTGCAACCAGATGTTCGACTCCCC...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTTGCTGGCTCATCGTGTaGTTCTGCAACTCTGTCTGG +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSCWLIV*FCNSVW
Trigger: CCAGACAGAGTTGCAGAACCACACGATGAGCCAGCA...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
3UTR CAA 72 bp TCATTAGAGTTTTACATCTGGGTTGCAAATGACACTTaGATTGGATGTAATGTTCAAATGGCCCTCCCCACG +
Preference number: 4 (lower is better)
Translates to: SLEFYIWVANDT*IGCNVQMALPT
Trigger: CGTGGGGAGGGCCATTTGAACATTACATCCAATCAAAGTGTCATTTGCAACCCAGATGTAAAACTCTAATGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATATCGCAGGTGTAAATTaGCTCATCTTCCACGTCTTC +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHIAGVN*LIFHVF
Trigger: GAAGACGTGGAAGATGAGTCAATTTACACCTGCGAT...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
CDS-3UTR GCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTCCATCTCCTATCATCTaGGTAGGTGACGCAACATCC +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSPSPII*VGDATS
Trigger: GGATGTTGCGTCACCTACGCAGATGATAGGAGATGG...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
CDS-3UTR GCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTTGTGGGCAAGCAGCGTaGTCTCATCAACAAAGACCT +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSCGQAA*SHQQRP
Trigger: AGGTCTTTGTTGATGAGAGCACGCTGCTTGCCCACA...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTACTCGAATGTGCTCCTaGAGGCTGTTGATGTCAGCA +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSTRMCS*RLLMSA
Trigger: TGCTGACATCAACAGCCTGCAGGAGCACATTCGAGT...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATCCATGGAGCACTGGTTaGAGAAGAAAGCATTATTCC +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHPWSTG*RRKHYS
Trigger: GGAATAATGCTTTCTTCTGCAACCAGTGCTCCATGG...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTACATCTTCTTCTCGTTaGTGTGCTTCACGGCCAGGT +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSTSSSR*CASRPG
Trigger: ACCTGGCCGTGAAGCACAGCAACGAGAAGAAGATGT...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTAAGTCGAACATCTGGTTaGACAGTTTACACTCATGGT +
Preference number: 4 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLSRTSG*TVYTHG
Trigger: ACCATGAGTGTAAACTGTGCAACCAGATGTTCGACT...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTGCAAAGATATGCTGTTaGAGCTTGTTGGCCTGGACG +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSAKICC*SLLAWT
Trigger: CGTCCAGGCCAACAAGCTGCAACAGCATATCTTTGC...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTTGCACGGCAAAGATATaGTGTTGCAGCTTGTTGGCC +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSCTAKI*CCSLLA
Trigger: GGCCAACAAGCTGCAACAGCATATCTTTGCCGTGCA...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTACTTGTGTTTCTGGTTaGCGTGGGCTTGGTGGATGT +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSTCVSG*RGLGGC
Trigger: ACATCCACCAAGCCCACGCCAACCAGAAACACAAGT...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATAAGCCCATGGAGCACTaGTTGCAGAAGAAAGCATTA +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHKPMEH*LQKKAL
Trigger: TAATGCTTTCTTCTGCAACCAGTGCTCCATGGGCTT...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATTTCTCGAACGTCATCTaGCACTTGATACACTGGTAC +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHFSNVI*HLIHWY
Trigger: GTACCAGTGTATCAAGTGCCAGATGACGTTCGAGAA...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAACACAGTTTACACTCATaGTTAATGCCTTCCTCGATC +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKHSLHS*LMPSSI
Trigger: GATCGAGGAAGGCATTAACCATGAGTGTAAACTGTG...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAATTCTGCAACTCTGTCTaGAAGAAAAACTTCTGTGGG +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKFCNSV*KKNFCG
Trigger: CCCACAGAAGTTTTTCTTCCAGACAGAGTTGCAGAA...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR TCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTACGTCATCTGGCACTTaGTACACTGGTACGTCTTCT +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSTSSGT*YTGTSS
Trigger: AGAAGACGTACCAGTGTATCAAGTGCCAGATGACGT...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTAACTCCTCCTCACTCTaGAGTGGCATTTTGCAGATG +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSNSSSL*SGILQM
Trigger: CATCTGCAAAATGCCACTGCAGAGTGAGGAGGAGTT...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAACACACGTTACACTTATaGCTGCCCTTTATGAATTCT +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKHTLHL*LPFMNS
Trigger: AGAATTCATAAAGGGCAGCCATAAGTGTAACGTGTG...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTGAAGAAAAACTTCTGTaGGCACTGCGAGCAGTCGTA +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSEEKLL*ALRAVV
Trigger: TACGACTGCTCGCAGTGCCCACAGAAGTTTTTCTTC...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATTTCTGCAACTCTGTCTaGAAGAAAAACTTCTGTGGG +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHFCNSV*KKNFCG
Trigger: CCCACAGAAGTTTTTCTTCCAGACAGAGTTGCAGAA...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTCCATGGAGCACTGGTTaGAGAAGAAAGCATTATTCC +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSPWSTG*RRKHYS
Trigger: GGAATAATGCTTTCTTCTGCAACCAGTGCTCCATGG...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAAAGCGGGATGTTCTTGTaGTTCTCTTTAATGTGTTTA +
Preference number: 4 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKSGMFL*FSLMCL
Trigger: TAAACACATTAAAGAGAACCACAAGAACATCCCGCT...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATCACACGTTACACTTATaGCTGCCCTTTATGAATTCT +
Preference number: 4 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHHTLHL*LPFMNS
Trigger: AGAATTCATAAAGGGCAGCCATAAGTGTAACGTGTG...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR GCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTAGTCGAACATCTGGTTaGACAGTTTACACTCATGGT +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSSRTSG*TVYTHG
Trigger: ACCATGAGTGTAAACTGTGCAACCAGATGTTCGACT...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTCACAGTTTACACTCATaGTTAATGCCTTCCTCGATC +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSHSLHS*LMPSSI
Trigger: GATCGAGGAAGGCATTAACCATGAGTGTAAACTGTG...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CCA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTAGCGGGATGTTCTTGTaGTTCTCTTTAATGTGTTTA +
Preference number: 4 (lower is better)
Translates to: PSNHITMHNYLELQLKSSSGMFL*FSLMCL
Trigger: TAAACACATTAAAGAGAACCACAAGAACATCCCGCT...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 90 bp TTCAGGGCAGCGGAGGCCGGCACAGGGCCGGTCAGCAGGTTCGGGTaGGGCCAGGCCACCCACCTGTCCATTGGCACTCCGGGCCATGCA +
Preference number: 5 (lower is better)
Translates to: FRAAEAGTGPVSRFG*GQATHLSIGTPGHA
Trigger: TGCATGGCCCGGAGTGCCAATGGACAGGTGGGTGGCCTGGCCCCACCCGAACCTGCTGACCGGCCCTGTGCCGGCCTCCGCTGCCCTGAA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 90 bp GCAGCATGCCCTGCAGGTCGGCGGGCTCTGCCTTCTTGGTGGAGGTaGGGGGCACCCCGTTGGCCGTGCCATTCTCCGCGGCAGCGTCAA +
Preference number: 5 (lower is better)
Translates to: AACPAGRRALPSWWR*GAPRWPCHSPRQRQ
Trigger: TTGACGCTGCCGCGGAGAATGGCACGGCCAACGGGGTGCCCCCCACCTCCACCAAGAAGGCAGAGCCCGCCGACCTGCAGGGCATGCTGC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS GCA 90 bp CCCAGCACAGGGTCAGGGCTGACGCTGTGGTTACTGGAGTCGGGCTaGCGGTGGCTGTCCAGGTGGCAGTACACACCCTCCACAGAGGAG +
Preference number: 5 (lower is better)
Translates to: PSTGSGLTLWLLESG*RWLSRWQYTPSTEE
Trigger: CTCCTCTGTGGAGGGTGTGTACTGCCACCTGGACAGCCACCGGCAGCCCGACTCCAGTAACCACAGCGTCAGCCCTGACCCTGTGCTGGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 90 bp GGGCCAGCTCTGCCCATCATCCCGCATCTTCTTCTGCCCCCTCAGTaGCTTCAAGGTGGAGTCTGGCGTGGACCCGCGCTCCACAGAGGC +
Preference number: 5 (lower is better)
Translates to: GPALPIIPHLLLPPQ*LQGGVWRGPALHRG
Trigger: GCCTCTGTGGAGCGCGGGTCCACGCCAGACTCCACCTTGAAGCCACTGAGGGGGCAGAAGAAGATGCGGGATGATGGGCAGAGCTGGCCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 90 bp CTCATGGAAGCCACACTGCCCAGCACAGGGTCAGGGCTGACGCTGTaGTTACTGGAGTCGGGCTGCCGGTGGCTGTCCAGGTGGCAGTAC +
Preference number: 5 (lower is better)
Translates to: LMEATLPSTGSGLTL*LLESGCRWLSRWQY
Trigger: GTACTGCCACCTGGACAGCCACCGGCAGCCCGACTCCAGTAACCACAGCGTCAGCCCTGACCCTGTGCTGGGCAGTGTGGCTTCCATGAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 90 bp GCCCATCATCCCGCATCTTCTTCTGCCCCCTCAGTGGCTTCAAGGTaGAGTCTGGCGTGGACCCGCGCTCCACAGAGGCGCTGGAGTCAG +
Preference number: 5 (lower is better)
Translates to: AHHPASSSAPSVASR*SLAWTRAPQRRWSQ
Trigger: CTGACTCCAGCGCCTCTGTGGAGCGCGGGTCCACGCCAGACTCCACCTTGAAGCCACTGAGGGGGCAGAAGAAGATGCGGGATGATGGGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS GCA 90 bp ACCCCGTTGGCCGTGCCATTCTCCGCGGCAGCGTCAAACACGCAGTaGTTCTCCCGCAGGTGCTTCTCCAGCAGGATGACGGCATGGAAG +
Preference number: 5 (lower is better)
Translates to: TPLAVPFSAAASNTQ*FSRRCFSSRMTAWK
Trigger: CTTCCATGCCGTCATCCTGCTGGAGAAGCACCTGCGGGAGAAGCACTGCGTGTTTGACGCTGCCGCGGAGAATGGCACGGCCAACGGGGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 90 bp ACAGGGTCAGGGCTGACGCTGTGGTTACTGGAGTCGGGCTGCCGGTaGCTGTCCAGGTGGCAGTACACACCCTCCACAGAGGAGAACTGC +
Preference number: 5 (lower is better)
Translates to: TGSGLTLWLLESGCR*LSRWQYTPSTEENC
Trigger: GCAGTTCTCCTCTGTGGAGGGTGTGTACTGCCACCTGGACAGCCACCGGCAGCCCGACTCCAGTAACCACAGCGTCAGCCCTGACCCTGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 90 bp ATCCCGCATCTTCTTCTGCCCCCTCAGTGGCTTCAAGGTGGAGTCTaGCGTGGACCCGCGCTCCACAGAGGCGCTGGAGTCAGGTGTAGC +
Preference number: 5 (lower is better)
Translates to: IPHLLLPPQWLQGGV*RGPALHRGAGVRCS
Trigger: GCTACACCTGACTCCAGCGCCTCTGTGGAGCGCGGGTCCACGCCAGACTCCACCTTGAAGCCACTGAGGGGGCAGAAGAAGATGCGGGAT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 90 bp TCGCCGCAGAAGATGCACTTGTGGGCCTTGGCCGGGTTGCCGAGGTaGCTGTGTTTGACGTGCACCTGCAGGTCAGCCTCCTTGCGGAAG +
Preference number: 5 (lower is better)
Translates to: SPQKMHLWALAGLPR*LCLTCTCRSASLRK
Trigger: CTTCCGCAAGGAGGCTGACCTGCAGGTGCACGTCAAACACAGCCACCTCGGCAACCCGGCCAAGGCCCACAAGTGCATCTTCTGCGGCGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGTCGCCCGTGTGCAGCTaGATGTGCCGGTCTCGGCTC +
Preference number: 5 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGESPVCS*MCRSRL
Trigger: GAGCCGAGACCGGCACATCAAGCTGCACACGGGCGA...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS TCA 90 bp AGGTGCCCGTGTCCAGACTCTTGCTGTGGGTCACCTTGTGCTCGGTaGGTGTCAGCAGCGAGGGGAAGCGCTCGCCACAGATGGGACACA +
Preference number: 5 (lower is better)
Translates to: RCPCPDSCCGSPCAR*VSAARGSARHRWDT
Trigger: TGTGTCCCATCTGTGGCGAGCGCTTCCCCTCGCTGCTGACACTCACCGAGCACAAGGTGACCCACAGCAAGAGTCTGGACACGGGCACCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS GCA 90 bp ATGCGACAGGTGCCCGTGTCCAGACTCTTGCTGTGGGTCACCTTGTaGTCGGTGAGTGTCAGCAGCGAGGGGAAGCGCTCGCCACAGATG +
Preference number: 5 (lower is better)
Translates to: MRQVPVSRLLLWVTL*SVSVSSEGKRSPQM
Trigger: CATCTGTGGCGAGCGCTTCCCCTCGCTGCTGACACTCACCGAGCACAAGGTGACCCACAGCAAGAGTCTGGACACGGGCACCTGTCGCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 90 bp CTGACGCTGTGGTTACTGGAGTCGGGCTGCCGGTGGCTGTCCAGGTaGCAGTACACACCCTCCACAGAGGAGAACTGCTCAGGGCACATG +
Preference number: 5 (lower is better)
Translates to: LTLWLLESGCRWLSR*QYTPSTEENCSGHM
Trigger: CATGTGCCCTGAGCAGTTCTCCTCTGTGGAGGGTGTGTACTGCCACCTGGACAGCCACCGGCAGCCCGACTCCAGTAACCACAGCGTCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 90 bp GAGGCGCTGTCGTTTCGGGGAAGACACCTCGACGTCGGAGGAGACTaGGCTCTGCTCAGCCTTGGACTTCTTGCTGTGTGCCAGCGGGAT +
Preference number: 5 (lower is better)
Translates to: EALSFRGRHLDVGGD*ALLSLGLLAVCQRD
Trigger: ATCCCGCTGGCACACAGCAAGAAGTCCAAGGCTGAGCAGAGCCCAGTCTCCTCCGACGTCGAGGTGTCTTCCCCGAAACGACAGCGCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAATGCACTTGTGGGCCTaGGCCGGGTTGCCGAGGTGG +
Preference number: 5 (lower is better)
Translates to: CNVQMALPTASPASLLRRMHLWA*AGLPRW
Trigger: CCACCTCGGCAACCCGGCCAAGGCCCACAAGTGCAT...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGCCGCAGAAGATGCACTaGTGGGCCTTGGCCGGGTTG +
Preference number: 5 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEPQKMH*WALAGL
Trigger: CAACCCGGCCAAGGCCCACAAGTGCATCTTCTGCGG...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS GCA 90 bp TTGGCCAGGTGTTCCTTGTTCTTCTTGTGGGCCTGCATGTGGCTCTaGAGGGAGCTGGTGGAGGAGAAGCCGCGCTTGCACACGCTGCAC +
Preference number: 5 (lower is better)
Translates to: LARCSLFFLWACMWL*RELVEEKPRLHTLH
Trigger: GTGCAGCGTGTGCAAGCGCGGCTTCTCCTCCACCAGCTCCCTGCAGAGCCACATGCAGGCCCACAAGAAGAACAAGGAACACCTGGCCAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS GCA 90 bp ACCTCTGGGCAGTGGATGCACTGTAGATCCGCCTTCTCTGAGAGCTaGGGGTGGAGGGTGAGCACGTGCTTCTCCAGCTCCTCTGTCTGG +
Preference number: 5 (lower is better)
Translates to: TSGQWMHCRSAFSES*GWRVSTCFSSSSVW
Trigger: CCAGACAGAGGAGCTGGAGAAGCACGTGCTCACCCTCCACCCGCAGCTCTCAGAGAAGGCGGATCTACAGTGCATCCACTGCCCAGAGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS GCA 90 bp CGGTGGCTGTCCAGGTGGCAGTACACACCCTCCACAGAGGAGAACTaGTCAGGGCACATGGGGCACTTGTGTTTCTGGTTGGCGTGGGCT +
Preference number: 5 (lower is better)
Translates to: RWLSRWQYTPSTEEN*SGHMGHLCFWLAWA
Trigger: AGCCCACGCCAACCAGAAACACAAGTGCCCCATGTGCCCTGAGCAGTTCTCCTCTGTGGAGGGTGTGTACTGCCACCTGGACAGCCACCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS GCA 90 bp GACTCCAGCTTGGTGCTCCCCACACTGCAATGCGCCTGTTGGATGTaGTCTGTGAGCGAGGACTCGGTGAGGAAGCCCATGGAGCACTGG +
Preference number: 5 (lower is better)
Translates to: DSSLVLPTLQCACWM*SVSEDSVRKPMEHW
Trigger: CCAGTGCTCCATGGGCTTCCTCACCGAGTCCTCGCTCACAGAGCACATCCAACAGGCGCATTGCAGTGTGGGGAGCACCAAGCTGGAGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 90 bp CCATACATGGGCTCTGATGCGTCCACGTCATCCTCACTGGCCTCGTaGCTGTTCGGCGCCTCAGGATTCTTGAGCAGCATGCCCTGCAGG +
Preference number: 5 (lower is better)
Translates to: PYMGSDASTSSSLAS*LFGASGFLSSMPCR
Trigger: CCTGCAGGGCATGCTGCTCAAGAATCCTGAGGCGCCGAACAGCCACGAGGCCAGTGAGGATGACGTGGACGCATCAGAGCCCATGTATGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 90 bp GGCATTTTGCAGATGCGACAGGTGCCCGTGTCCAGACTCTTGCTGTaGGTCACCTTGTGCTCGGTGAGTGTCAGCAGCGAGGGGAAGCGC +
Preference number: 5 (lower is better)
Translates to: GILQMRQVPVSRLLL*VTLCSVSVSSEGKR
Trigger: GCGCTTCCCCTCGCTGCTGACACTCACCGAGCACAAGGTGACCCACAGCAAGAGTCTGGACACGGGCACCTGTCGCATCTGCAAAATGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 90 bp TGGGCACCTTTCCGGGGCCCACTGGTCTCTGGTGTAAGATCACGGTaGTCCACCTGCATGTGGCTCTCCAGGTCCTCAGCACTCTCGAAC +
Preference number: 5 (lower is better)
Translates to: WAPFRGPLVSGVRSR*STCMWLSRSSALSN
Trigger: GTTCGAGAGTGCTGAGGACCTGGAGAGCCACATGCAGGTGGACCACCGTGATCTTACACCAGAGACCAGTGGGCCCCGGAAAGGTGCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGCGGTCTCGGCTCCTCTaGTGTTTGAAGAGGCGGCTG +
Preference number: 5 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGERSRLL*CLKRRL
Trigger: CAGCCGCCTCTTCAAACACAAGAGGAGCCGAGACCG...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGGAGGAGAAGCCGCGCTaGCACACGCTGCACTTGAAC +
Preference number: 5 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEEEKPR*HTLHLN
Trigger: GTTCAAGTGCAGCGTGTGCAAGCGCGGCTTCTCCTC...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGGAGTCGAAGTCCTCTTaGCACTGGGGGCAGGCCTGT +
Preference number: 5 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEESKSS*HWGQAC
Trigger: ACAGGCCTGCCCCCAGTGCAAAGAGGACTTCGACTC...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGCCCGTGTCCAGACTCTaGCTGTGGGTCACCTTGTGC +
Preference number: 5 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEPVSRL*LWVTLC
Trigger: GCACAAGGTGACCCACAGCAAGAGTCTGGACACGGG...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS GCA 90 bp TCCTTCTCCGACTTGGCCAGGTGTTCCTTGTTCTTCTTGTGGGCCTaGATGTGGCTCTGCAGGGAGCTGGTGGAGGAGAAGCCGCGCTTG +
Preference number: 5 (lower is better)
Translates to: SFSDLARCSLFFLWA*MWLCRELVEEKPRL
Trigger: CAAGCGCGGCTTCTCCTCCACCAGCTCCCTGCAGAGCCACATGCAGGCCCACAAGAAGAACAAGGAACACCTGGCCAAGTCGGAGAAGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS GCA 90 bp CAGACCACACAGCGGAAGCCGGTGAGGGAGTTCCGTAAGTCGGGGTaGATCTGGCAGTGCTCAATGAACTCCTCCTCACTCTGCAGTGGC +
Preference number: 5 (lower is better)
Translates to: QTTQRKPVREFRKSG*IWQCSMNSSSLCSG
Trigger: GCCACTGCAGAGTGAGGAGGAGTTCATTGAGCACTGCCAGATGCACCCCGACTTACGGAACTCCCTCACCGGCTTCCGCTGTGTGGTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 90 bp GGGCAGTGGATGCACTGTAGATCCGCCTTCTCTGAGAGCTGCGGGTaGAGGGTGAGCACGTGCTTCTCCAGCTCCTCTGTCTGGCTAAAG +
Preference number: 5 (lower is better)
Translates to: GQWMHCRSAFSESCG*RVSTCFSSSSVWLK
Trigger: CTTTAGCCAGACAGAGGAGCTGGAGAAGCACGTGCTCACCCTCCACCCGCAGCTCTCAGAGAAGGCGGATCTACAGTGCATCCACTGCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 90 bp ACAGGAGACTCCAGCTTGGTGCTCCCCACACTGCAATGCGCCTGTTaGATGTGCTCTGTGAGCGAGGACTCGGTGAGGAAGCCCATGGAG +
Preference number: 5 (lower is better)
Translates to: TGDSSLVLPTLQCAC*MCSVSEDSVRKPME
Trigger: CTCCATGGGCTTCCTCACCGAGTCCTCGCTCACAGAGCACATCCAACAGGCGCATTGCAGTGTGGGGAGCACCAAGCTGGAGTCTCCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGAGGCGGATGAAGGACTaGTCGCAGAACTGGCAAGGG +
Preference number: 5 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGERRMKD*SQNWQG
Trigger: CCCTTGCCAGTTCTGCGACAAGTCCTTCATCCGCCT...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGCGGCTCCTCTTGTGTTaGAAGAGGCGGCTGCAGAAG +
Preference number: 5 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGERLLLC*KRRLQK
Trigger: CTTCTGCAGCCGCCTCTTCAAACACAAGAGGAGCCG...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGTTGCACACGCTGCACTaGAACGGCTTGCTGGAGCTG +
Preference number: 5 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGELHTLH*NGLLEL
Trigger: CAGCTCCAGCAAGCCGTTCAAGTGCAGCGTGTGCAA...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGAGTCGAAGTCCTCTTaGCACTGGGGGCAGGCCTGT +
Preference number: 5 (lower is better)
Translates to: CNVQMALPTASPASLLRRESKSS*HWGQAC
Trigger: ACAGGCCTGCCCCCAGTGCAAAGAGGACTTCGACTC...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGACCGAGGAGAACTGCTaGTCACAGCTCTCGCACACG +
Preference number: 5 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGETEENC*SQLSHT
Trigger: CGTGTGCGAGAGCTGTGACAAGCAGTTCTCCTCGGT...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGACCGAGGTGGCTGTGTTaGACGTGCACCTGCAGGTCA +
Preference number: 5 (lower is better)
Translates to: CNVQMALPTASPASLLRRPRWLC*TCTCRS
Trigger: TGACCTGCAGGTGCACGTCAAACACAGCCACCTCGG...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGTTGCTGTGGGTCACCTaGTGCTCGGTGAGTGTCAGC +
Preference number: 5 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGELLWVT*CSVSVS
Trigger: GCTGACACTCACCGAGCACAAGGTGACCCACAGCAA...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS TCA 90 bp CACGTTACACTTATGGCTGCCCTTTATGAATTCTGCCTTCTTGCGTaGGCCGTCGTCCTCGCCGGGCCGGATGTTGTGATCCCGGAGGCG +
Preference number: 5 (lower is better)
Translates to: HVTLMAALYEFCLLA*AVVLAGPDVVIPEA
Trigger: CGCCTCCGGGATCACAACATCCGGCCCGGCGAGGACGACGGCTCACGCAAGAAGGCAGAATTCATAAAGGGCAGCCATAAGTGTAACGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS GCA 90 bp ATCACCATCTCCAGGACAGCGGTGGGCCCGGTGGTCCGTCAGGTCTaGCAGAGACTCGAAGTCCTGCTGACAGTGATCGCAGGTGTAAAT +
Preference number: 5 (lower is better)
Translates to: ITISRTAVGPVVRQV*QRLEVLLTVIAGVN
Trigger: ATTTACACCTGCGATCACTGTCAGCAGGACTTCGAGTCTCTGGCAGACCTGACGGACCACCGGGCCCACCGCTGTCCTGGAGATGGTGAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000174764.2
CDS GCA 90 bp CCTTCCTCCTCGCCGAGGCCGAGGTCACAACCATCTCCTATCATCTaGGTAGGTGACGCAACATCCTTGCTGGAGGGAGATGAAGCCACC +
Preference number: 5 (lower is better)
Translates to: PSSSPRPRSQPSPII*VGDATSLLEGDEAT
Trigger: GGTGGCTTCATCTCCCTCCAGCAAGGATGTTGCGTCACCTACGCAGATGATAGGAGATGGTTGTGACCTCGGCCTCGGCGAGGAGGAAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000174249.2
ENSMUST00000174764.2
CDS GCA 90 bp TGTCGTTTCGGGGAAGACACCTCGACGTCGGAGGAGACTGGGCTCTaGTCAGCCTTGGACTTCTTGCTGTGTGCCAGCGGGATGTTCTTG +
Preference number: 5 (lower is better)
Translates to: CRFGEDTSTSEETGL*SALDFLLCASGMFL
Trigger: CAAGAACATCCCGCTGGCACACAGCAAGAAGTCCAAGGCTGAGCAGAGCCCAGTCTCCTCCGACGTCGAGGTGTCTTCCCCGAAACGACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 90 bp TCCACAGAGGAGAACTGCTCAGGGCACATGGGGCACTTGTGTTTCTaGTTGGCGTGGGCTTGGTGGATGTGGGCAAGCAGCGTGCTCTCA +
Preference number: 5 (lower is better)
Translates to: STEENCSGHMGHLCF*LAWAWWMWASSVLS
Trigger: TGAGAGCACGCTGCTTGCCCACATCCACCAAGCCCACGCCAACCAGAAACACAAGTGCCCCATGTGCCCTGAGCAGTTCTCCTCTGTGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGACTGCAGAAGGTGCACTaGAACGGCAGCTTGTCGCTG +
Preference number: 5 (lower is better)
Translates to: CNVQMALPTASPASLLRRLQKVH*NGSLSL
Trigger: CAGCGACAAGCTGCCGTTCAAGTGCACCTTCTGCAG...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGACGGCTCCTCTTGTGTTaGAAGAGGCGGCTGCAGAAG +
Preference number: 5 (lower is better)
Translates to: CNVQMALPTASPASLLRRRLLLC*KRRLQK
Trigger: CTTCTGCAGCCGCCTCTTCAAACACAAGAGGAGCCG...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGACTGCACTTGAACGGCTaGCTGGAGCTGTGGGTCTTC +
Preference number: 5 (lower is better)
Translates to: CNVQMALPTASPASLLRRLHLNG*LELWVF
Trigger: GAAGACCCACAGCTCCAGCAAGCCGTTCAAGTGCAG...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGGCTTCCTTCTCCGACTaGGCCAGGTGTTCCTTGTTC +
Preference number: 5 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEASFSD*ARCSLF
Trigger: GAACAAGGAACACCTGGCCAAGTCGGAGAAGGAAGC...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAACCGAGGAGAACTGCTaGTCACAGCTCTCGCACACG +
Preference number: 5 (lower is better)
Translates to: CNVQMALPTASPASLLRRTEENC*SQLSHT
Trigger: CGTGTGCGAGAGCTGTGACAAGCAGTTCTCCTCGGT...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGAAGGTGCCATGGATCTaGAGTTCCAGCGTCGAGGTG +
Preference number: 5 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEKVPWI*SSSVEV
Trigger: CACCTCGACGCTGGAACTCAAGATCCATGGCACCTT...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGTGCTGTTGCAGCTTGTaGGCCTGGACGAAGACTGTG +
Preference number: 5 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGECCCSL*AWTKTV
Trigger: CACAGTCTTCGTCCAGGCCAACAAGCTGCAACAGCA...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS TCA 90 bp CGGGGCAGTAGTTGCAGTGGAAGGCAGAGATGTTGCCAAACTGCATaGCGGGGTAGGCGTGGCTCTTGTGCAGCTTGCGCACATGCTCAT +
Preference number: 5 (lower is better)
Translates to: RGSSCSGRQRCCQTA*RGRRGSCAACAHAH
Trigger: ATGAGCATGTGCGCAAGCTGCACAAGAGCCACGCCTACCCCGTCATGCAGTTTGGCAACATCTCTGCCTTCCACTGCAACTACTGCCCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS GCA 90 bp TCTTTGCACTGGGGGCAGGCCTGTTTCCGAAGCAGCAGCTCCAGGTaGAGCTTCAGGTGGGTCTGGAAGCTCTCGAAGTTGGAGAACTTG +
Preference number: 5 (lower is better)
Translates to: SLHWGQACFRSSSSR*SFRWVWKLSKLENL
Trigger: CAAGTTCTCCAACTTCGAGAGCTTCCAGACCCACCTGAAGCTGCACCTGGAGCTGCTGCTTCGGAAACAGGCCTGCCCCCAGTGCAAAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS GCA 90 bp TTCCGGGGCCCACTGGTCTCTGGTGTAAGATCACGGTGGTCCACCTaGATGTGGCTCTCCAGGTCCTCAGCACTCTCGAACTTCACGTTA +
Preference number: 5 (lower is better)
Translates to: FRGPLVSGVRSRWST*MWLSRSSALSNFTL
Trigger: TAACGTGAAGTTCGAGAGTGCTGAGGACCTGGAGAGCCACATGCAGGTGGACCACCGTGATCTTACACCAGAGACCAGTGGGCCCCGGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 90 bp ATGTGGGCAAGCAGCGTGCTCTCATCAACAAAGACCTCTGGGCAGTaGATGCACTGTAGATCCGCCTTCTCTGAGAGCTGCGGGTGGAGG +
Preference number: 5 (lower is better)
Translates to: MWASSVLSSTKTSGQ*MHCRSAFSESCGWR
Trigger: CCTCCACCCGCAGCTCTCAGAGAAGGCGGATCTACAGTGCATCCACTGCCCAGAGGTCTTTGTTGATGAGAGCACGCTGCTTGCCCACAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 90 bp CACATGGGGCACTTGTGTTTCTGGTTGGCGTGGGCTTGGTGGATGTaGGCAAGCAGCGTGCTCTCATCAACAAAGACCTCTGGGCAGTGG +
Preference number: 5 (lower is better)
Translates to: HMGHLCFWLAWAWWM*ASSVLSSTKTSGQW
Trigger: CCACTGCCCAGAGGTCTTTGTTGATGAGAGCACGCTGCTTGCCCACATCCACCAAGCCCACGCCAACCAGAAACACAAGTGCCCCATGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 90 bp TCAGGGCACATGGGGCACTTGTGTTTCTGGTTGGCGTGGGCTTGGTaGATGTGGGCAAGCAGCGTGCTCTCATCAACAAAGACCTCTGGG +
Preference number: 5 (lower is better)
Translates to: SGHMGHLCFWLAWAW*MWASSVLSSTKTSG
Trigger: CCCAGAGGTCTTTGTTGATGAGAGCACGCTGCTTGCCCACATCCACCAAGCCCACGCCAACCAGAAACACAAGTGCCCCATGTGCCCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 90 bp CAGAGGAGAACTGCTCAGGGCACATGGGGCACTTGTGTTTCTGGTTaGCGTGGGCTTGGTGGATGTGGGCAAGCAGCGTGCTCTCATCAA +
Preference number: 5 (lower is better)
Translates to: QRRTAQGTWGTCVSG*RGLGGCGQAACSHQ
Trigger: TTGATGAGAGCACGCTGCTTGCCCACATCCACCAAGCCCACGCCAACCAGAAACACAAGTGCCCCATGTGCCCTGAGCAGTTCTCCTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 90 bp GGGAAGACACCTCGACGTCGGAGGAGACTGGGCTCTGCTCAGCCTTaGACTTCTTGCTGTGTGCCAGCGGGATGTTCTTGTGGTTCTCTT +
Preference number: 5 (lower is better)
Translates to: GKTPRRRRRLGSAQP*TSCCVPAGCSCGSL
Trigger: AAGAGAACCACAAGAACATCCCGCTGGCACACAGCAAGAAGTCCAAGGCTGAGCAGAGCCCAGTCTCCTCCGACGTCGAGGTGTCTTCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 90 bp TCTCCTCTTGACTTGTCACGCTGTTCCTGTCTTCCAGCGCACGGCTaGTTTTCCGATCACACTCTGGCTCTCCTTCCAGGCCTCCTGCTG +
Preference number: 5 (lower is better)
Translates to: SPLDLSRCSCLPAHG*FSDHTLALLPGLLL
Trigger: CAGCAGGAGGCCTGGAAGGAGAGCCAGAGTGTGATCGGAAAACCAGCCGTGCGCTGGAAGACAGGAACAGCGTGACAAGTCAAGAGGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109655.9
ENSMUST00000174764.2
CDS-3UTR CAA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGATGGCTCTTGTGCAGCTaGCGCACATGCTCATTGAGG +
Preference number: 5 (lower is better)
Translates to: CNVQMALPTASPASLLRRWLLCS*RTCSLR
Trigger: CCTCAATGAGCATGTGCGCAAGCTGCACAAGAGCCA...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGTGGAAGCTCTCGAAGTaGGAGAACTTGAGGTCGCAC +
Preference number: 5 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEWKLSK*ENLRSH
Trigger: GTGCGACCTCAAGTTCTCCAACTTCGAGAGCTTCCA...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGATGCTGTTGCAGCTTGTaGGCCTGGACGAAGACTGTG +
Preference number: 5 (lower is better)
Translates to: CNVQMALPTASPASLLRRCCCSL*AWTKTV
Trigger: CACAGTCTTCGTCCAGGCCAACAAGCTGCAACAGCA...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGGGCAAAGATATGCTGTaGCAGCTTGTTGGCCTGGAC +
Preference number: 5 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEGKDML*QLVGLD
Trigger: GTCCAGGCCAACAAGCTGCAACAGCATATCTTTGCC...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS TCA 90 bp CATTGGGGCCACAGTGCGAGACTCGAATGTGCTCCTGCAGGCTGTTaGTGTCAGCAAACATCTCGGGGCAGTAGTTGCAGTGGAAGGCAG +
Preference number: 5 (lower is better)
Translates to: HWGHSARLECAPAGC*CQQTSRGSSCSGRQ
Trigger: CTGCCTTCCACTGCAACTACTGCCCCGAGATGTTTGCTGACATCAACAGCCTGCAGGAGCACATTCGAGTCTCGCACTGTGGCCCCAATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS TCA 90 bp AGGTGGGTCTGGAAGCTCTCGAAGTTGGAGAACTTGAGGTCGCACTaGTTGCAGGGGTACTCGCCATTAGAGATGGAGTTGGCGCTCCCC +
Preference number: 5 (lower is better)
Translates to: RWVWKLSKLENLRSH*LQGYSPLEMELALP
Trigger: GGGGAGCGCCAACTCCATCTCTAATGGCGAGTACCCCTGCAATCAGTGCGACCTCAAGTTCTCCAACTTCGAGAGCTTCCAGACCCACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS GCA 90 bp AAGTCGGGGTGCATCTGGCAGTGCTCAATGAACTCCTCCTCACTCTaGAGTGGCATTTTGCAGATGCGACAGGTGCCCGTGTCCAGACTC +
Preference number: 5 (lower is better)
Translates to: KSGCIWQCSMNSSSL*SGILQMRQVPVSRL
Trigger: GAGTCTGGACACGGGCACCTGTCGCATCTGCAAAATGCCACTGCAGAGTGAGGAGGAGTTCATTGAGCACTGCCAGATGCACCCCGACTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS GCA 90 bp CGGAAGCCGGTGAGGGAGTTCCGTAAGTCGGGGTGCATCTGGCAGTaGTCAATGAACTCCTCCTCACTCTGCAGTGGCATTTTGCAGATG +
Preference number: 5 (lower is better)
Translates to: RKPVREFRKSGCIWQ*SMNSSSLCSGILQM
Trigger: CATCTGCAAAATGCCACTGCAGAGTGAGGAGGAGTTCATTGAGCACTGCCAGATGCACCCCGACTTACGGAACTCCCTCACCGGCTTCCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 90 bp TCTCCTCTTGACTTGTCACGCTGTTCCTGTCTTCCAGCGCACGGCTaGTTTTCCGATCACACTCTGGCTCTCCTTCCAGGCCTCCATGGT +
Preference number: 5 (lower is better)
Translates to: SPLDLSRCSCLPAHG*FSDHTLALLPGLHG
Trigger: ACCATGGAGGCCTGGAAGGAGAGCCAGAGTGTGATCGGAAAACCAGCCGTGCGCTGGAAGACAGGAACAGCGTGACAAGTCAAGAGGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052250.15
CDS CCA 90 bp TGCTCAGGGCACATGGGGCACTTGTGTTTCTGGTTGGCGTGGGCTTaGTGGATGTGGGCAAGCAGCGTGCTCTCATCAACAAAGACCTCT +
Preference number: 5 (lower is better)
Translates to: CSGHMGHLCFWLAWA*WMWASSVLSSTKTS
Trigger: AGAGGTCTTTGTTGATGAGAGCACGCTGCTTGCCCACATCCACCAAGCCCACGCCAACCAGAAACACAAGTGCCCCATGTGCCCTGAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 90 bp GAGAACTGCTCAGGGCACATGGGGCACTTGTGTTTCTGGTTGGCGTaGGCTTGGTGGATGTGGGCAAGCAGCGTGCTCTCATCAACAAAG +
Preference number: 5 (lower is better)
Translates to: ENCSGHMGHLCFWLA*AWWMWASSVLSSTK
Trigger: CTTTGTTGATGAGAGCACGCTGCTTGCCCACATCCACCAAGCCCACGCCAACCAGAAACACAAGTGCCCCATGTGCCCTGAGCAGTTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 90 bp GGGGTGCATCTGGCAGTGCTCAATGAACTCCTCCTCACTCTGCAGTaGCATTTTGCAGATGCGACAGGTGCCCGTGTCCAGACTCTTGCT +
Preference number: 5 (lower is better)
Translates to: GVHLAVLNELLLTLQ*HFADATGARVQTLA
Trigger: AGCAAGAGTCTGGACACGGGCACCTGTCGCATCTGCAAAATGCCACTGCAGAGTGAGGAGGAGTTCATTGAGCACTGCCAGATGCACCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 90 bp ACACAGCGGAAGCCGGTGAGGGAGTTCCGTAAGTCGGGGTGCATCTaGCAGTGCTCAATGAACTCCTCCTCACTCTGCAGTGGCATTTTG +
Preference number: 5 (lower is better)
Translates to: TQRKPVREFRKSGCI*QCSMNSSSLCSGIL
Trigger: CAAAATGCCACTGCAGAGTGAGGAGGAGTTCATTGAGCACTGCCAGATGCACCCCGACTTACGGAACTCCCTCACCGGCTTCCGCTGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGACACTTGAACGGCAGCTaGTCGCTGTGGATCTGTTCA +
Preference number: 5 (lower is better)
Translates to: CNVQMALPTASPASLLRRHLNGS*SLWICS
Trigger: TGAACAGATCCACAGCGACAAGCTGCCGTTCAAGTG...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGATGTTCCTTGTTCTTCTaGTGGGCCTGCATGTGGCTC +
Preference number: 5 (lower is better)
Translates to: CNVQMALPTASPASLLRRCSLFF*WACMWL
Trigger: GAGCCACATGCAGGCCCACAAGAAGAACAAGGAACA...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGATGCTCCTGCAGGCTGTaGATGTCAGCAAACATCTCG +
Preference number: 5 (lower is better)
Translates to: CNVQMALPTASPASLLRRCSCRL*MSANIS
Trigger: CGAGATGTTTGCTGACATCAACAGCCTGCAGGAGCA...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGCTGCAGAACCTGCAGTaGTACTTCTTGCTGTGTGTG +
Preference number: 5 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGELQNLQ*YFLLCV
Trigger: CACACACAGCAAGAAGTACAACTGCAGGTTCTGCAG...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGATTGCTACGGAACTCTTaGAGGCACAGGGCGCATTTG +
Preference number: 5 (lower is better)
Translates to: CNVQMALPTASPASLLRRLLRNS*RHRAHL
Trigger: CAAATGCGCCCTGTGCCTCAAAGAGTTCCGTAGCAA...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGATATGCTGTTGCAGCTaGTTGGCCTGGACGAAGACT +
Preference number: 5 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEICCCS*LAWTKT
Trigger: AGTCTTCGTCCAGGCCAACAAGCTGCAACAGCATAT...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 90 bp GGCCCACTGGTCTCTGGTGTAAGATCACGGTGGTCCACCTGCATGTaGCTCTCCAGGTCCTCAGCACTCTCGAACTTCACGTTACATTCA +
Preference number: 5 (lower is better)
Translates to: GPLVSGVRSRWSTCM*LSRSSALSNFTLHS
Trigger: TGAATGTAACGTGAAGTTCGAGAGTGCTGAGGACCTGGAGAGCCACATGCAGGTGGACCACCGTGATCTTACACCAGAGACCAGTGGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGCCCATGGAGCACTGGTaGCAGAAGAAAGCATTATTC +
Preference number: 5 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEPMEHW*QKKALF
Trigger: GAATAATGCTTTCTTCTGCAACCAGTGCTCCATGGG...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp GTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGGCCAGCGGGATGTTCTaGTGGTTCTCTTTAATGTGT +
Preference number: 5 (lower is better)
Translates to: VMFKWPSPRRLRQAFCGEASGMF*WFSLMC
Trigger: ACACATTAAAGAGAACCACAAGAACATCCCGCTGGC...CTCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS GCA 90 bp TGTGTTTCTGGTTGGCGTGGGCTTGGTGGATGTGGGCAAGCAGCGTaGTCTCATCAACAAAGACCTCTGGGCAGTGGATGCACTGTAGAT +
Preference number: 5 (lower is better)
Translates to: CVSGWRGLGGCGQAA*SHQQRPLGSGCTVD
Trigger: ATCTACAGTGCATCCACTGCCCAGAGGTCTTTGTTGATGAGAGCACGCTGCTTGCCCACATCCACCAAGCCCACGCCAACCAGAAACACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp TGTAATGTTCAAATGGCCCTCCCCACGGCGTCTCCGGCAAGCCTTCTGCGGAGAGAGTCGAACATCTGGTaGCACAGTTTACACTCATGG +
Preference number: 5 (lower is better)
Translates to: CNVQMALPTASPASLLRRESNIW*HSLHSW
Trigger: CCATGAGTGTAAACTGTGCAACCAGATGTTCGACTC...TCTCCGCAGAAGGCTTGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS TCA 90 bp CGTGGATCTGAATCTCTCTCTCGTTCTCGAACGTCATCTGGCACTTaGTACACTGGTACGTCTTCTTCCTGGGCACTGGTGACGTCTGGG +
Preference number: 5 (lower is better)
Translates to: RGSESLSRSRTSSGT*YTGTSSSWALVTSG
Trigger: CCCAGACGTCACCAGTGCCCAGGAAGAAGACGTACCAGTGTATCAAGTGCCAGATGACGTTCGAGAACGAGAGAGAGATTCAGATCCACG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS GCA 90 bp GTCGGAGGAGACTGGGCTCTGCTCAGCCTTGGACTTCTTGCTGTGTaGCAGCGGGATGTTCTTGTGGTTCTCTTTAATGTGTTTAGTGAG +
Preference number: 5 (lower is better)
Translates to: VGGDWALLSLGLLAV*QRDVLVVLFNVFSE
Trigger: CTCACTAAACACATTAAAGAGAACCACAAGAACATCCCGCTGGCACACAGCAAGAAGTCCAAGGCTGAGCAGAGCCCAGTCTCCTCCGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAATGGGCCTTGGCCGGGTaGCCGAGGTGGCTGTGTTTG +
Preference number: 5 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKWALAG*PRWLCL
Trigger: CAAACACAGCCACCTCGGCAACCCGGCCAAGGCCCA...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAAATGCACTTGTGGGCCTaGGCCGGGTTGCCGAGGTGG +
Preference number: 5 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKMHLWA*AGLPRW
Trigger: CCACCTCGGCAACCCGGCCAAGGCCCACAAGTGCAT...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACCACCCACCTGTCCATaGGCACTCCGGGCCATGCAG +
Preference number: 5 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLPPTCP*ALRAMQ
Trigger: CTGCATGGCCCGGAGTGCCAATGGACAGGTGGGTGG...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS TCA 90 bp ATTGACTCATCTTCCACGTCTTCATCGTCCTCATTTCTCTCCTCTTaGCTTGTCACGCTGTTCCTGTCTTCCAGCGCACGGCTGGTTTTC +
Preference number: 5 (lower is better)
Translates to: IDSSSTSSSSSFLSS*LVTLFLSSSARLVF
Trigger: GAAAACCAGCCGTGCGCTGGAAGACAGGAACAGCGTGACAAGTCAAGAGGAGAGAAATGAGGACGATGAAGACGTGGAAGATGAGTCAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000174764.2
CDS-3UTR CAA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATTCGCCCGTGTGCAGCTaGATGTGCCGGTCTCGGCTC +
Preference number: 5 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHSPVCS*MCRSRL
Trigger: GAGCCGAGACCGGCACATCAAGCTGCACACGGGCGA...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATTGGGCCTTGGCCGGGTaGCCGAGGTGGCTGTGTTTG +
Preference number: 5 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHWALAG*PRWLCL
Trigger: CAAACACAGCCACCTCGGCAACCCGGCCAAGGCCCA...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACCGCAGAAGATGCACTaGTGGGCCTTGGCCGGGTTG +
Preference number: 5 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLPQKMH*WALAGL
Trigger: CAACCCGGCCAAGGCCCACAAGTGCATCTTCTGCGG...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATCCACCCACCTGTCCATaGGCACTCCGGGCCATGCAG +
Preference number: 5 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHPPTCP*ALRAMQ
Trigger: CTGCATGGCCCGGAGTGCCAATGGACAGGTGGGTGG...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTAAAGCAGACGGGGCACTaGAAGGTACCGCCCATGCCC +
Preference number: 5 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLKQTGH*KVPPMP
Trigger: GGGCATGGGCGGTACCTTCAAGTGCCCCGTCTGCTT...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS TCA 90 bp TGCCAGAGACTCGAAGTCCTGCTGACAGTGATCGCAGGTGTAAATTaGCTCATCTTCCACGTCTTCATCGTCCTCATTTCTCTCCTCTTG +
Preference number: 5 (lower is better)
Translates to: CQRLEVLLTVIAGVN*LIFHVFIVLISLLL
Trigger: CAAGAGGAGAGAAATGAGGACGATGAAGACGTGGAAGATGAGTCAATTTACACCTGCGATCACTGTCAGCAGGACTTCGAGTCTCTGGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000174764.2
CDS TCA 90 bp TCATGGTTAATGCCTTCCTCGATCATGTGGTTGGCGACGTGGATCTaGATCTCTCTCTCGTTCTCGAACGTCATCTGGCACTTGATACAC +
Preference number: 5 (lower is better)
Translates to: SWLMPSSIMWLATWI*ISLSFSNVIWHLIH
Trigger: GTGTATCAAGTGCCAGATGACGTTCGAGAACGAGAGAGAGATTCAGATCCACGTCGCCAACCACATGATCGAGGAAGGCATTAACCATGA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAAGTCTTCAGGTGGATCTaGAGGTGGTCGCTGCGGGAG +
Preference number: 5 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKVFRWI*RWSLRE
Trigger: CTCCCGCAGCGACCACCTCAAGATCCACCTGAAGAC...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAAGAGGAGAAGCCGCGCTaGCACACGCTGCACTTGAAC +
Preference number: 5 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKEEKPR*HTLHLN
Trigger: GTTCAAGTGCAGCGTGTGCAAGCGCGGCTTCTCCTC...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATCTGGTTGGCGTGGGCTaGGTGGATGTGGGCAAGCAG +
Preference number: 5 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHLVGVG*VDVGKQ
Trigger: CTGCTTGCCCACATCCACCAAGCCCACGCCAACCAG...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAAGGGCACATGGGGCACTaGTGTTTCTGGTTGGCGTGG +
Preference number: 5 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKGHMGH*CFWLAW
Trigger: CCACGCCAACCAGAAACACAAGTGCCCCATGTGCCC...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTAGGGCACATGGGGCACTaGTGTTTCTGGTTGGCGTGG +
Preference number: 5 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLGHMGH*CFWLAW
Trigger: CCACGCCAACCAGAAACACAAGTGCCCCATGTGCCC...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAACCGAGGTGGCTGTGTTaGACGTGCACCTGCAGGTCA +
Preference number: 5 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKPRWLC*TCTCRS
Trigger: TGACCTGCAGGTGCACGTCAAACACAGCCACCTCGG...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACCCGTGTCCAGACTCTaGCTGTGGGTCACCTTGTGC +
Preference number: 5 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLPVSRL*LWVTLC
Trigger: GCACAAGGTGACCCACAGCAAGAGTCTGGACACGGG...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAAGGTGACGCAACATCCTaGCTGGAGGGAGATGAAGCC +
Preference number: 5 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKGDATS*LEGDEA
Trigger: GGCTTCATCTCCCTCCAGCAAGGATGTTGCGTCACC...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
CDS-3UTR CAA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACTGCAGAAGGTGCACTaGAACGGCAGCTTGTCGCTG +
Preference number: 5 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLLQKVH*NGSLSL
Trigger: CAGCGACAAGCTGCCGTTCAAGTGCACCTTCTGCAG...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATGTCTTCAGGTGGATCTaGAGGTGGTCGCTGCGGGAG +
Preference number: 5 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHVFRWI*RWSLRE
Trigger: CTCCCGCAGCGACCACCTCAAGATCCACCTGAAGAC...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTAACAGGAGACTCCAGCTaGGTGCTCCCCACACTGCAA +
Preference number: 5 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLTGDSS*VLPTLQ
Trigger: TTGCAGTGTGGGGAGCACCAAGCTGGAGTCTCCTGT...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAATCAGCCTTGGACTTCTaGCTGTGTGCCAGCGGGATG +
Preference number: 5 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKSALDF*LCASGM
Trigger: CATCCCGCTGGCACACAGCAAGAAGTCCAAGGCTGA...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTTGGGCCTTGGCCGGGTaGCCGAGGTGGCTGTGTTTG +
Preference number: 5 (lower is better)
Translates to: PSNHITMHNYLELQLKSSWALAG*PRWLCL
Trigger: CAAACACAGCCACCTCGGCAACCCGGCCAAGGCCCA...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTATGCACTTGTGGGCCTaGGCCGGGTTGCCGAGGTGG +
Preference number: 5 (lower is better)
Translates to: PSNHITMHNYLELQLKSSMHLWA*AGLPRW
Trigger: CCACCTCGGCAACCCGGCCAAGGCCCACAAGTGCAT...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAAACGGCATGGAAGGCCTaGCTGCAGAACCTGCAGTTG +
Preference number: 5 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKTAWKA*LQNLQL
Trigger: CAACTGCAGGTTCTGCAGCAAGGCCTTCCATGCCGT...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTAACGGCATGGAAGGCCTaGCTGCAGAACCTGCAGTTG +
Preference number: 5 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLTAWKA*LQNLQL
Trigger: CAACTGCAGGTTCTGCAGCAAGGCCTTCCATGCCGT...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAATTGCTGTGGGTCACCTaGTGCTCGGTGAGTGTCAGC +
Preference number: 5 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKLLWVT*CSVSVS
Trigger: GCTGACACTCACCGAGCACAAGGTGACCCACAGCAA...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTCCACCCACCTGTCCATaGGCACTCCGGGCCATGCAG +
Preference number: 5 (lower is better)
Translates to: PSNHITMHNYLELQLKSSPPTCP*ALRAMQ
Trigger: CTGCATGGCCCGGAGTGCCAATGGACAGGTGGGTGG...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATAGGCGGATGAAGGACTaGTCGCAGAACTGGCAAGGG +
Preference number: 5 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHRRMKD*SQNWQG
Trigger: CCCTTGCCAGTTCTGCGACAAGTCCTTCATCCGCCT...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATCTGCAGAAGGTGCACTaGAACGGCAGCTTGTCGCTG +
Preference number: 5 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHLQKVH*NGSLSL
Trigger: CAGCGACAAGCTGCCGTTCAAGTGCACCTTCTGCAG...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATTTGCACACGCTGCACTaGAACGGCTTGCTGGAGCTG +
Preference number: 5 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHLHTLH*NGLLEL
Trigger: CAGCTCCAGCAAGCCGTTCAAGTGCAGCGTGTGCAA...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTCTGGTTGGCGTGGGCTaGGTGGATGTGGGCAAGCAG +
Preference number: 5 (lower is better)
Translates to: PSNHITMHNYLELQLKSSLVGVG*VDVGKQ
Trigger: CTGCTTGCCCACATCCACCAAGCCCACGCCAACCAG...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACACTTGTGTTTCTGGTaGGCGTGGGCTTGGTGGATG +
Preference number: 5 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLHLCFW*AWAWWM
Trigger: CATCCACCAAGCCCACGCCAACCAGAAACACAAGTG...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAATGGCTCTTGTGCAGCTaGCGCACATGCTCATTGAGG +
Preference number: 5 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKWLLCS*RTCSLR
Trigger: CCTCAATGAGCATGTGCGCAAGCTGCACAAGAGCCA...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAATGGAAGGCAGAGATGTaGCCAAACTGCATGACGGGG +
Preference number: 5 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKWKAEM*PNCMTG
Trigger: CCCCGTCATGCAGTTTGGCAACATCTCTGCCTTCCA...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTCCGCAGAAGATGCACTaGTGGGCCTTGGCCGGGTTG +
Preference number: 5 (lower is better)
Translates to: PSNHITMHNYLELQLKSSPQKMH*WALAGL
Trigger: CAACCCGGCCAAGGCCCACAAGTGCATCTTCTGCGG...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAAAAGGTGCCATGGATCTaGAGTTCCAGCGTCGAGGTG +
Preference number: 5 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKKVPWI*SSSVEV
Trigger: CACCTCGACGCTGGAACTCAAGATCCATGGCACCTT...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAACTGACCAGGTCCTGCTaGCTACGGAACTCTTTGAGG +
Preference number: 5 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKLTRSC*LRNSLR
Trigger: CCTCAAAGAGTTCCGTAGCAAGCAGGACCTGGTCAG...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTAAGCAGACGGGGCACTaGAAGGTACCGCCCATGCCC +
Preference number: 5 (lower is better)
Translates to: PSNHITMHNYLELQLKSSKQTGH*KVPPMP
Trigger: GGGCATGGGCGGTACCTTCAAGTGCCCCGTCTGCTT...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACACTTGAACGGCAGCTaGTCGCTGTGGATCTGTTCA +
Preference number: 5 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLHLNGS*SLWICS
Trigger: TGAACAGATCCACAGCGACAAGCTGCCGTTCAAGTG...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTCGGTCTCGGCTCCTCTaGTGTTTGAAGAGGCGGCTG +
Preference number: 5 (lower is better)
Translates to: PSNHITMHNYLELQLKSSRSRLL*CLKRRL
Trigger: CAGCCGCCTCTTCAAACACAAGAGGAGCCGAGACCG...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTGAGGAGAAGCCGCGCTaGCACACGCTGCACTTGAAC +
Preference number: 5 (lower is better)
Translates to: PSNHITMHNYLELQLKSSEEKPR*HTLHLN
Trigger: GTTCAAGTGCAGCGTGTGCAAGCGCGGCTTCTCCTC...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTGGGCACATGGGGCACTaGTGTTTCTGGTTGGCGTGG +
Preference number: 5 (lower is better)
Translates to: PSNHITMHNYLELQLKSSGHMGH*CFWLAW
Trigger: CCACGCCAACCAGAAACACAAGTGCCCCATGTGCCC...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAATGGAAGCTCTCGAAGTaGGAGAACTTGAGGTCGCAC +
Preference number: 5 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKWKLSK*ENLRSH
Trigger: GTGCGACCTCAAGTTCTCCAACTTCGAGAGCTTCCA...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTATACATCTTCTTCTCGTaGCTGTGCTTCACGGCCAGG +
Preference number: 5 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLYIFFS*LCFTAR
Trigger: CCTGGCCGTGAAGCACAGCAACGAGAAGAAGATGTA...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATAAGGTGCCATGGATCTaGAGTTCCAGCGTCGAGGTG +
Preference number: 5 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHKVPWI*SSSVEV
Trigger: CACCTCGACGCTGGAACTCAAGATCCATGGCACCTT...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATCTGACCAGGTCCTGCTaGCTACGGAACTCTTTGAGG +
Preference number: 5 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHLTRSC*LRNSLR
Trigger: CCTCAAAGAGTTCCGTAGCAAGCAGGACCTGGTCAG...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTAGGCAAAGATATGCTGTaGCAGCTTGTTGGCCTGGAC +
Preference number: 5 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLGKDML*QLVGLD
Trigger: GTCCAGGCCAACAAGCTGCAACAGCATATCTTTGCC...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTGGTGACGCAACATCCTaGCTGGAGGGAGATGAAGCC +
Preference number: 5 (lower is better)
Translates to: PSNHITMHNYLELQLKSSGDATS*LEGDEA
Trigger: GGCTTCATCTCCCTCCAGCAAGGATGTTGCGTCACC...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
CDS-3UTR CAA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTAGGCGGATGAAGGACTaGTCGCAGAACTGGCAAGGG +
Preference number: 5 (lower is better)
Translates to: PSNHITMHNYLELQLKSSRRMKD*SQNWQG
Trigger: CCCTTGCCAGTTCTGCGACAAGTCCTTCATCCGCCT...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATCACTTGAACGGCAGCTaGTCGCTGTGGATCTGTTCA +
Preference number: 5 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHHLNGS*SLWICS
Trigger: TGAACAGATCCACAGCGACAAGCTGCCGTTCAAGTG...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTCTGCACTTGAACGGCTaGCTGGAGCTGTGGGTCTTC +
Preference number: 5 (lower is better)
Translates to: PSNHITMHNYLELQLKSSLHLNG*LELWVF
Trigger: GAAGACCCACAGCTCCAGCAAGCCGTTCAAGTGCAG...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTTTGCACACGCTGCACTaGAACGGCTTGCTGGAGCTG +
Preference number: 5 (lower is better)
Translates to: PSNHITMHNYLELQLKSSLHTLH*NGLLEL
Trigger: CAGCTCCAGCAAGCCGTTCAAGTGCAGCGTGTGCAA...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAAATGAAGTCGTCCTTCTaGGCTTCCTTCTCCGACTTG +
Preference number: 5 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKMKSSF*ASFSDL
Trigger: CAAGTCGGAGAAGGAAGCCAAGAAGGACGACTTCAT...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATTGCTCCTGCAGGCTGTaGATGTCAGCAAACATCTCG +
Preference number: 5 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHCSCRL*MSANIS
Trigger: CGAGATGTTTGCTGACATCAACAGCCTGCAGGAGCA...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTACAGGAGACTCCAGCTaGGTGCTCCCCACACTGCAA +
Preference number: 5 (lower is better)
Translates to: PSNHITMHNYLELQLKSSTGDSS*VLPTLQ
Trigger: TTGCAGTGTGGGGAGCACCAAGCTGGAGTCTCCTGT...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTTCAGCCTTGGACTTCTaGCTGTGTGCCAGCGGGATG +
Preference number: 5 (lower is better)
Translates to: PSNHITMHNYLELQLKSSSALDF*LCASGM
Trigger: CATCCCGCTGGCACACAGCAAGAAGTCCAAGGCTGA...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTACCGAGGAGAACTGCTaGTCACAGCTCTCGCACACG +
Preference number: 5 (lower is better)
Translates to: PSNHITMHNYLELQLKSSTEENC*SQLSHT
Trigger: CGTGTGCGAGAGCTGTGACAAGCAGTTCTCCTCGGT...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAACTGCAGAACCTGCAGTaGTACTTCTTGCTGTGTGTG +
Preference number: 5 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKLQNLQ*YFLLCV
Trigger: CACACACAGCAAGAAGTACAACTGCAGGTTCTGCAG...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTACGGCATGGAAGGCCTaGCTGCAGAACCTGCAGTTG +
Preference number: 5 (lower is better)
Translates to: PSNHITMHNYLELQLKSSTAWKA*LQNLQL
Trigger: CAACTGCAGGTTCTGCAGCAAGGCCTTCCATGCCGT...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTTTGCTGTGGGTCACCTaGTGCTCGGTGAGTGTCAGC +
Preference number: 5 (lower is better)
Translates to: PSNHITMHNYLELQLKSSLLWVT*CSVSVS
Trigger: GCTGACACTCACCGAGCACAAGGTGACCCACAGCAA...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATTTGCTACGGAACTCTTaGAGGCACAGGGCGCATTTG +
Preference number: 5 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHLLRNS*RHRAHL
Trigger: CAAATGCGCCCTGTGCCTCAAAGAGTTCCGTAGCAA...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAAATATGCTGTTGCAGCTaGTTGGCCTGGACGAAGACT +
Preference number: 5 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKICCCS*LAWTKT
Trigger: AGTCTTCGTCCAGGCCAACAAGCTGCAACAGCATAT...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTAATATGCTGTTGCAGCTaGTTGGCCTGGACGAAGACT +
Preference number: 5 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLICCCS*LAWTKT
Trigger: AGTCTTCGTCCAGGCCAACAAGCTGCAACAGCATAT...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTATTCTCTCCTCTTGACTaGTCACGCTGTTCCTGTCTT +
Preference number: 5 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLFSPLD*SRCSCL
Trigger: AAGACAGGAACAGCGTGACAAGTCAAGAGGAGAGAA...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
CDS-3UTR CAA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAACTCATTTCTCTCCTCTaGACTTGTCACGCTGTTCCT +
Preference number: 5 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKLISLL*TCHAVP
Trigger: AGGAACAGCGTGACAAGTCAAGAGGAGAGAAATGAG...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
CDS-3UTR CAA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTGCTTCCTTCTCCGACTaGGCCAGGTGTTCCTTGTTC +
Preference number: 5 (lower is better)
Translates to: PSNHITMHNYLELQLKSSASFSD*ARCSLF
Trigger: GAACAAGGAACACCTGGCCAAGTCGGAGAAGGAAGC...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATATGAAGTCGTCCTTCTaGGCTTCCTTCTCCGACTTG +
Preference number: 5 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHMKSSF*ASFSDL
Trigger: CAAGTCGGAGAAGGAAGCCAAGAAGGACGACTTCAT...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTCACTTGTGTTTCTGGTaGGCGTGGGCTTGGTGGATG +
Preference number: 5 (lower is better)
Translates to: PSNHITMHNYLELQLKSSHLCFW*AWAWWM
Trigger: CATCCACCAAGCCCACGCCAACCAGAAACACAAGTG...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTTGGAAGGCAGAGATGTaGCCAAACTGCATGACGGGG +
Preference number: 5 (lower is better)
Translates to: PSNHITMHNYLELQLKSSWKAEM*PNCMTG
Trigger: CCCCGTCATGCAGTTTGGCAACATCTCTGCCTTCCA...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp CATTTCCAGCTGCTTATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACCCATGGAGCACTGGTaGCAGAAGAAAGCATTATTC +
Preference number: 5 (lower is better)
Translates to: HFQLLIIAAPHGQIIRVLPMEHW*QKKALF
Trigger: GAATAATGCTTTCTTCTGCAACCAGTGCTCCATGGG...TAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGAAATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAAGCCAGCGGGATGTTCTaGTGGTTCTCTTTAATGTGT +
Preference number: 5 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKASGMF*WFSLMC
Trigger: ACACATTAAAGAGAACCACAAGAACATCCCGCTGGC...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAAAACGTCATCTGGCACTaGATACACTGGTACGTCTTC +
Preference number: 5 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKNVIWH*IHWYVF
Trigger: GAAGACGTACCAGTGTATCAAGTGCCAGATGACGTT...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp ATAATAGCAGCGCCTCATGGCCAAATCATTAGAGTTTTACATCTGGGTTGCAAAGAGTCGAACATCTGGTaGCACAGTTTACACTCATGG +
Preference number: 5 (lower is better)
Translates to: IIAAPHGQIIRVLHLGCKESNIW*HSLHSW
Trigger: CCATGAGTGTAAACTGTGCAACCAGATGTTCGACTC...TTTGCAACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATTTCTCTCCTCTTGACTaGTCACGCTGTTCCTGTCTT +
Preference number: 5 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHFSPLD*SRCSCL
Trigger: AAGACAGGAACAGCGTGACAAGTCAAGAGGAGAGAA...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
CDS-3UTR CAA 90 bp TCATTACAGAGTTTTAATCACTGTCCGGTGAACTGGCAAATCCAATCAAAGCATCTCATTTCTCTCCTCTaGACTTGTCACGCTGTTCCT +
Preference number: 5 (lower is better)
Translates to: SLQSFNHCPVNWQIQSKHLISLL*TCHAVP
Trigger: AGGAACAGCGTGACAAGTCAAGAGGAGAGAAATGAG...ATGCTTTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTCTGTAATGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
CDS-3UTR CAA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTTGTTCCTTGTTCTTCTaGTGGGCCTGCATGTGGCTC +
Preference number: 5 (lower is better)
Translates to: PSNHITMHNYLELQLKSSCSLFF*WACMWL
Trigger: GAGCCACATGCAGGCCCACAAGAAGAACAAGGAACA...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTTGGAAGCTCTCGAAGTaGGAGAACTTGAGGTCGCAC +
Preference number: 5 (lower is better)
Translates to: PSNHITMHNYLELQLKSSWKLSK*ENLRSH
Trigger: GTGCGACCTCAAGTTCTCCAACTTCGAGAGCTTCCA...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTTACATCTTCTTCTCGTaGCTGTGCTTCACGGCCAGG +
Preference number: 5 (lower is better)
Translates to: PSNHITMHNYLELQLKSSYIFFS*LCFTAR
Trigger: CCTGGCCGTGAAGCACAGCAACGAGAAGAAGATGTA...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTATGAAGTCGTCCTTCTaGGCTTCCTTCTCCGACTTG +
Preference number: 5 (lower is better)
Translates to: PSNHITMHNYLELQLKSSMKSSF*ASFSDL
Trigger: CAAGTCGGAGAAGGAAGCCAAGAAGGACGACTTCAT...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTCTGCAGAACCTGCAGTaGTACTTCTTGCTGTGTGTG +
Preference number: 5 (lower is better)
Translates to: PSNHITMHNYLELQLKSSLQNLQ*YFLLCV
Trigger: CACACACAGCAAGAAGTACAACTGCAGGTTCTGCAG...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTCCCATGGAGCACTGGTaGCAGAAGAAAGCATTATTC +
Preference number: 5 (lower is better)
Translates to: PSNHITMHNYLELQLKSSPMEHW*QKKALF
Trigger: GAATAATGCTTTCTTCTGCAACCAGTGCTCCATGGG...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTAACGTCATCTGGCACTaGATACACTGGTACGTCTTC +
Preference number: 5 (lower is better)
Translates to: PSNHITMHNYLELQLKSSNVIWH*IHWYVF
Trigger: GAAGACGTACCAGTGTATCAAGTGCCAGATGACGTT...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS-3UTR CAA 90 bp CCAAGCAATCACATCACGATGCACAATTACCTAGAATTGCAATTAAAAAGTAGTGATCGCAGGTGTAAATaGACTCATCTTCCACGTCTT +
Preference number: 5 (lower is better)
Translates to: PSNHITMHNYLELQLKSSDRRCK*THLPRL
Trigger: AAGACGTGGAAGATGAGTCAATTTACACCTGCGATC...ACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGATGTGATTGCTTGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
CDS CCA 72 bp CCTGCAGGTCGGCGGGCTCTGCCTTCTTGGTGGAGGTaGGGGGCACCCCGTTGGCCGTGCCATTCTCCGCGG +
Preference number: 6 (lower is better)
Translates to: PAGRRALPSWWR*GAPRWPCHSPR
Trigger: CCGCGGAGAATGGCACGGCCAACGGGGTGCCCCCCACCTCCACCAAGAAGGCAGAGCCCGCCGACCTGCAGG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 72 bp CAGGTTCGGGTGGGGCCAGGCCACCCACCTGTCCATTaGCACTCCGGGCCATGCAGCCGGCACACAGGCCAT +
Preference number: 6 (lower is better)
Translates to: QVRVGPGHPPVH*HSGPCSRHTGH
Trigger: ATGGCCTGTGTGCCGGCTGCATGGCCCGGAGTGCCAATGGACAGGTGGGTGGCCTGGCCCCACCCGAACCTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS GCA 72 bp GGGTCAGGGCTGACGCTGTGGTTACTGGAGTCGGGCTaGCGGTGGCTGTCCAGGTGGCAGTACACACCCTCC +
Preference number: 6 (lower is better)
Translates to: GSGLTLWLLESG*RWLSRWQYTPS
Trigger: GGAGGGTGTGTACTGCCACCTGGACAGCCACCGGCAGCCCGACTCCAGTAACCACAGCGTCAGCCCTGACCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 72 bp TCTGCCCCCTCAGTGGCTTCAAGGTGGAGTCTGGCGTaGACCCGCGCTCCACAGAGGCGCTGGAGTCAGGTG +
Preference number: 6 (lower is better)
Translates to: SAPSVASRWSLA*TRAPQRRWSQV
Trigger: CACCTGACTCCAGCGCCTCTGTGGAGCGCGGGTCCACGCCAGACTCCACCTTGAAGCCACTGAGGGGGCAGA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 72 bp CCCGCATCTTCTTCTGCCCCCTCAGTGGCTTCAAGGTaGAGTCTGGCGTGGACCCGCGCTCCACAGAGGCGC +
Preference number: 6 (lower is better)
Translates to: PASSSAPSVASR*SLAWTRAPQRR
Trigger: GCGCCTCTGTGGAGCGCGGGTCCACGCCAGACTCCACCTTGAAGCCACTGAGGGGGCAGAAGAAGATGCGGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 72 bp GGGCTGACGCTGTGGTTACTGGAGTCGGGCTGCCGGTaGCTGTCCAGGTGGCAGTACACACCCTCCACAGAG +
Preference number: 6 (lower is better)
Translates to: GLTLWLLESGCR*LSRWQYTPSTE
Trigger: CTCTGTGGAGGGTGTGTACTGCCACCTGGACAGCCACCGGCAGCCCGACTCCAGTAACCACAGCGTCAGCCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 72 bp CTTCTTCTGCCCCCTCAGTGGCTTCAAGGTGGAGTCTaGCGTGGACCCGCGCTCCACAGAGGCGCTGGAGTC +
Preference number: 6 (lower is better)
Translates to: LLLPPQWLQGGV*RGPALHRGAGV
Trigger: GACTCCAGCGCCTCTGTGGAGCGCGGGTCCACGCCAGACTCCACCTTGAAGCCACTGAGGGGGCAGAAGAAG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS TCA 72 bp TGTGGGCCTTGGCCGGGTTGCCGAGGTGGCTGTGTTTaGCGTGCACCTGCAGGTCAGCCTCCTTGCGGAAGT +
Preference number: 6 (lower is better)
Translates to: CGPWPGCRGGCV*RAPAGQPPCGS
Trigger: ACTTCCGCAAGGAGGCTGACCTGCAGGTGCACGTCAAACACAGCCACCTCGGCAACCCGGCCAAGGCCCACA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS GCA 72 bp TCCAGGACAGCGGTGGGCCCGGTGGTCCGTCAGGTCTaGCAGAGACTCGAAGTCCTGCTGACAGTGATCGCA +
Preference number: 6 (lower is better)
Translates to: SRTAVGPVVRQV*QRLEVLLTVIA
Trigger: TGCGATCACTGTCAGCAGGACTTCGAGTCTCTGGCAGACCTGACGGACCACCGGGCCCACCGCTGTCCTGGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000174764.2
CDS GCA 72 bp GGGGAAGACACCTCGACGTCGGAGGAGACTGGGCTCTaGTCAGCCTTGGACTTCTTGCTGTGTGCCAGCGGG +
Preference number: 6 (lower is better)
Translates to: GEDTSTSEETGL*SALDFLLCASG
Trigger: CCCGCTGGCACACAGCAAGAAGTCCAAGGCTGAGCAGAGCCCAGTCTCCTCCGACGTCGAGGTGTCTTCCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS GCA 72 bp GCCGTGCCATTCTCCGCGGCAGCGTCAAACACGCAGTaGTTCTCCCGCAGGTGCTTCTCCAGCAGGATGACG +
Preference number: 6 (lower is better)
Translates to: AVPFSAAASNTQ*FSRRCFSSRMT
Trigger: CGTCATCCTGCTGGAGAAGCACCTGCGGGAGAAGCACTGCGTGTTTGACGCTGCCGCGGAGAATGGCACGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS GCA 72 bp GTGCCCGTGTCCAGACTCTTGCTGTGGGTCACCTTGTaGTCGGTGAGTGTCAGCAGCGAGGGGAAGCGCTCG +
Preference number: 6 (lower is better)
Translates to: VPVSRLLLWVTL*SVSVSSEGKRS
Trigger: CGAGCGCTTCCCCTCGCTGCTGACACTCACCGAGCACAAGGTGACCCACAGCAAGAGTCTGGACACGGGCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 72 bp TCGTCATCACCATCTCCAGGACAGCGGTGGGCCCGGTaGTCCGTCAGGTCTGCCAGAGACTCGAAGTCCTGC +
Preference number: 6 (lower is better)
Translates to: SSSPSPGQRWAR*SVRSARDSKSC
Trigger: GCAGGACTTCGAGTCTCTGGCAGACCTGACGGACCACCGGGCCCACCGCTGTCCTGGAGATGGTGATGACGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000174764.2
CDS CCA 72 bp CTGCCCATCATCCCGCATCTTCTTCTGCCCCCTCAGTaGCTTCAAGGTGGAGTCTGGCGTGGACCCGCGCTC +
Preference number: 6 (lower is better)
Translates to: LPIIPHLLLPPQ*LQGGVWRGPAL
Trigger: GAGCGCGGGTCCACGCCAGACTCCACCTTGAAGCCACTGAGGGGGCAGAAGAAGATGCGGGATGATGGGCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CAA 72 bp TTGTGGGCCTTGGCCGGGTTGCCGAGGTGGCTGTGTTaGACGTGCACCTGCAGGTCAGCCTCCTTGCGGAAG +
Preference number: 6 (lower is better)
Translates to: LWALAGLPRWLC*TCTCRSASLRK
Trigger: CTTCCGCAAGGAGGCTGACCTGCAGGTGCACGTCAAACACAGCCACCTCGGCAACCCGGCCAAGGCCCACAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CAA 72 bp TCGCCGCAGAAGATGCACTTGTGGGCCTTGGCCGGGTaGCCGAGGTGGCTGTGTTTGACGTGCACCTGCAGG +
Preference number: 6 (lower is better)
Translates to: SPQKMHLWALAG*PRWLCLTCTCR
Trigger: CCTGCAGGTGCACGTCAAACACAGCCACCTCGGCAACCCGGCCAAGGCCCACAAGTGCATCTTCTGCGGCGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CAA 72 bp ACCTCGGTGCTGAAGGTCTCGCCGCAGAAGATGCACTaGTGGGCCTTGGCCGGGTTGCCGAGGTGGCTGTGT +
Preference number: 6 (lower is better)
Translates to: TSVLKVSPQKMH*WALAGLPRWLC
Trigger: ACACAGCCACCTCGGCAACCCGGCCAAGGCCCACAAGTGCATCTTCTGCGGCGAGACCTTCAGCACCGAGGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CAA 90 bp CTGAAGGTCTCGCCGCAGAAGATGCACTTGTGGGCCTTGGCCGGGTaGCCGAGGTGGCTGTGTTTGACGTGCACCTGCAGGTCAGCCTCC +
Preference number: 6 (lower is better)
Translates to: LKVSPQKMHLWALAG*PRWLCLTCTCRSAS
Trigger: GGAGGCTGACCTGCAGGTGCACGTCAAACACAGCCACCTCGGCAACCCGGCCAAGGCCCACAAGTGCATCTTCTGCGGCGAGACCTTCAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CAA 90 bp ACCTCGGTGCTGAAGGTCTCGCCGCAGAAGATGCACTTGTGGGCCTaGGCCGGGTTGCCGAGGTGGCTGTGTTTGACGTGCACCTGCAGG +
Preference number: 6 (lower is better)
Translates to: TSVLKVSPQKMHLWA*AGLPRWLCLTCTCR
Trigger: CCTGCAGGTGCACGTCAAACACAGCCACCTCGGCAACCCGGCCAAGGCCCACAAGTGCATCTTCTGCGGCGAGACCTTCAGCACCGAGGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CAA 90 bp ACGTCATCCTCACTGGCCTCGTGGCTGTTCGGCGCCTCAGGATTCTaGAGCAGCATGCCCTGCAGGTCGGCGGGCTCTGCCTTCTTGGTG +
Preference number: 6 (lower is better)
Translates to: TSSSLASWLFGASGF*SSMPCRSAGSAFLV
Trigger: CACCAAGAAGGCAGAGCCCGCCGACCTGCAGGGCATGCTGCTCAAGAATCCTGAGGCGCCGAACAGCCACGAGGCCAGTGAGGATGACGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CAA 90 bp CAGATGCGACAGGTGCCCGTGTCCAGACTCTTGCTGTGGGTCACCTaGTGCTCGGTGAGTGTCAGCAGCGAGGGGAAGCGCTCGCCACAG +
Preference number: 6 (lower is better)
Translates to: QMRQVPVSRLLLWVT*CSVSVSSEGKRSPQ
Trigger: CTGTGGCGAGCGCTTCCCCTCGCTGCTGACACTCACCGAGCACAAGGTGACCCACAGCAAGAGTCTGGACACGGGCACCTGTCGCATCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 72 bp AAGATGCACTTGTGGGCCTTGGCCGGGTTGCCGAGGTaGCTGTGTTTGACGTGCACCTGCAGGTCAGCCTCC +
Preference number: 6 (lower is better)
Translates to: KMHLWALAGLPR*LCLTCTCRSAS
Trigger: GGAGGCTGACCTGCAGGTGCACGTCAAACACAGCCACCTCGGCAACCCGGCCAAGGCCCACAAGTGCATCTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CAA 72 bp CTGGTGGAGGAGAAGCCGCGCTTGCACACGCTGCACTaGAACGGCTTGCTGGAGCTGTGGGTCTTCAGGTGG +
Preference number: 6 (lower is better)
Translates to: LVEEKPRLHTLH*NGLLELWVFRW
Trigger: CCACCTGAAGACCCACAGCTCCAGCAAGCCGTTCAAGTGCAGCGTGTGCAAGCGCGGCTTCTCCTCCACCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CAA 72 bp CTGAAGGTCTCGCCGCAGAAGATGCACTTGTGGGCCTaGGCCGGGTTGCCGAGGTGGCTGTGTTTGACGTGC +
Preference number: 6 (lower is better)
Translates to: LKVSPQKMHLWA*AGLPRWLCLTC
Trigger: GCACGTCAAACACAGCCACCTCGGCAACCCGGCCAAGGCCCACAAGTGCATCTTCTGCGGCGAGACCTTCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CAA 90 bp TGCAGGGAGCTGGTGGAGGAGAAGCCGCGCTTGCACACGCTGCACTaGAACGGCTTGCTGGAGCTGTGGGTCTTCAGGTGGATCTTGAGG +
Preference number: 6 (lower is better)
Translates to: CRELVEEKPRLHTLH*NGLLELWVFRWILR
Trigger: CCTCAAGATCCACCTGAAGACCCACAGCTCCAGCAAGCCGTTCAAGTGCAGCGTGTGCAAGCGCGGCTTCTCCTCCACCAGCTCCCTGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS TCA 72 bp ACGGCTTGCTGGAGCTGTGGGTCTTCAGGTGGATCTTaGGGTGGTCGCTGCGGGAGAAAGCTGCCTCGCACT +
Preference number: 6 (lower is better)
Translates to: TACWSCGSSGGS*GGRCGRKLPRT
Trigger: AGTGCGAGGCAGCTTTCTCCCGCAGCGACCACCTCAAGATCCACCTGAAGACCCACAGCTCCAGCAAGCCGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
ENSMUST00000174764.2
CDS TCA 72 bp TGGTGGAGGAGAAGCCGCGCTTGCACACGCTGCACTTaGACGGCTTGCTGGAGCTGTGGGTCTTCAGGTGGA +
Preference number: 6 (lower is better)
Translates to: WWRRSRACTRCT*TACWSCGSSGG
Trigger: TCCACCTGAAGACCCACAGCTCCAGCAAGCCGTTCAAGTGCAGCGTGTGCAAGCGCGGCTTCTCCTCCACCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS TCA 72 bp GGCTGCACCGCAGATGTCACAGCCATACATGGGCTCTaGTGCGTCCACGTCATCCTCACTGGCCTCGTGGCT +
Preference number: 6 (lower is better)
Translates to: GCTADVTAIHGL*CVHVILTGLVA
Trigger: AGCCACGAGGCCAGTGAGGATGACGTGGACGCATCAGAGCCCATGTATGGCTGTGACATCTGCGGTGCAGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS TCA 72 bp TGTCCAGACTCTTGCTGTGGGTCACCTTGTGCTCGGTaGGTGTCAGCAGCGAGGGGAAGCGCTCGCCACAGA +
Preference number: 6 (lower is better)
Translates to: CPDSCCGSPCAR*VSAARGSARHR
Trigger: TCTGTGGCGAGCGCTTCCCCTCGCTGCTGACACTCACCGAGCACAAGGTGACCCACAGCAAGAGTCTGGACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS GCA 72 bp CAGTGGATGCACTGTAGATCCGCCTTCTCTGAGAGCTaGGGGTGGAGGGTGAGCACGTGCTTCTCCAGCTCC +
Preference number: 6 (lower is better)
Translates to: QWMHCRSAFSES*GWRVSTCFSSS
Trigger: GGAGCTGGAGAAGCACGTGCTCACCCTCCACCCGCAGCTCTCAGAGAAGGCGGATCTACAGTGCATCCACTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS GCA 72 bp GCTGCAGGAGGGACTCCTGAGAGTCGAAGTCCTCTTTaGACTGGGGGCAGGCCTGTTTCCGAAGCAGCAGCT +
Preference number: 6 (lower is better)
Translates to: AAGGTPESRSPL*TGGRPVSEAAA
Trigger: AGCTGCTGCTTCGGAAACAGGCCTGCCCCCAGTGCAAAGAGGACTTCGACTCTCAGGAGTCCCTCCTGCAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 72 bp ACTGCTCAGGGCACATGGGGCACTTGTGTTTCTGGTTaGCGTGGGCTTGGTGGATGTGGGCAAGCAGCGTGC +
Preference number: 6 (lower is better)
Translates to: TAQGTWGTCVSG*RGLGGCGQAAC
Trigger: GCACGCTGCTTGCCCACATCCACCAAGCCCACGCCAACCAGAAACACAAGTGCCCCATGTGCCCTGAGCAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 72 bp TGGTTACTGGAGTCGGGCTGCCGGTGGCTGTCCAGGTaGCAGTACACACCCTCCACAGAGGAGAACTGCTCA +
Preference number: 6 (lower is better)
Translates to: WLLESGCRWLSR*QYTPSTEENCS
Trigger: TGAGCAGTTCTCCTCTGTGGAGGGTGTGTACTGCCACCTGGACAGCCACCGGCAGCCCGACTCCAGTAACCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 72 bp GGCTCTGATGCGTCCACGTCATCCTCACTGGCCTCGTaGCTGTTCGGCGCCTCAGGATTCTTGAGCAGCATG +
Preference number: 6 (lower is better)
Translates to: GSDASTSSSLAS*LFGASGFLSSM
Trigger: CATGCTGCTCAAGAATCCTGAGGCGCCGAACAGCCACGAGGCCAGTGAGGATGACGTGGACGCATCAGAGCC
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 72 bp TTCCGGGGCCCACTGGTCTCTGGTGTAAGATCACGGTaGTCCACCTGCATGTGGCTCTCCAGGTCCTCAGCA +
Preference number: 6 (lower is better)
Translates to: FRGPLVSGVRSR*STCMWLSRSSA
Trigger: TGCTGAGGACCTGGAGAGCCACATGCAGGTGGACCACCGTGATCTTACACCAGAGACCAGTGGGCCCCGGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CAA 90 bp TCGCCCGTGTGCAGCTTGATGTGCCGGTCTCGGCTCCTCTTGTGTTaGAAGAGGCGGCTGCAGAAGGTGCACTTGAACGGCAGCTTGTCG +
Preference number: 6 (lower is better)
Translates to: SPVCSLMCRSRLLLC*KRRLQKVHLNGSLS
Trigger: CGACAAGCTGCCGTTCAAGTGCACCTTCTGCAGCCGCCTCTTCAAACACAAGAGGAGCCGAGACCGGCACATCAAGCTGCACACGGGCGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
ENSMUST00000174764.2
CDS CAA 90 bp TGCAGTGGCATTTTGCAGATGCGACAGGTGCCCGTGTCCAGACTCTaGCTGTGGGTCACCTTGTGCTCGGTGAGTGTCAGCAGCGAGGGG +
Preference number: 6 (lower is better)
Translates to: CSGILQMRQVPVSRL*LWVTLCSVSVSSEG
Trigger: CCCCTCGCTGCTGACACTCACCGAGCACAAGGTGACCCACAGCAAGAGTCTGGACACGGGCACCTGTCGCATCTGCAAAATGCCACTGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS GCA 72 bp TGTTCCTTGTTCTTCTTGTGGGCCTGCATGTGGCTCTaGAGGGAGCTGGTGGAGGAGAAGCCGCGCTTGCAC +
Preference number: 6 (lower is better)
Translates to: CSLFFLWACMWL*RELVEEKPRLH
Trigger: GTGCAAGCGCGGCTTCTCCTCCACCAGCTCCCTGCAGAGCCACATGCAGGCCCACAAGAAGAACAAGGAACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS GCA 72 bp GGTTGGCGTGGGCTTGGTGGATGTGGGCAAGCAGCGTaGTCTCATCAACAAAGACCTCTGGGCAGTGGATGC +
Preference number: 6 (lower is better)
Translates to: GWRGLGGCGQAA*SHQQRPLGSGC
Trigger: GCATCCACTGCCCAGAGGTCTTTGTTGATGAGAGCACGCTGCTTGCCCACATCCACCAAGCCCACGCCAACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS GCA 72 bp CAGCGGAAGCCGGTGAGGGAGTTCCGTAAGTCGGGGTaGATCTGGCAGTGCTCAATGAACTCCTCCTCACTC +
Preference number: 6 (lower is better)
Translates to: QRKPVREFRKSG*IWQCSMNSSSL
Trigger: GAGTGAGGAGGAGTTCATTGAGCACTGCCAGATGCACCCCGACTTACGGAACTCCCTCACCGGCTTCCGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 72 bp ATGCACTGTAGATCCGCCTTCTCTGAGAGCTGCGGGTaGAGGGTGAGCACGTGCTTCTCCAGCTCCTCTGTC +
Preference number: 6 (lower is better)
Translates to: MHCRSAFSESCG*RVSTCFSSSSV
Trigger: GACAGAGGAGCTGGAGAAGCACGTGCTCACCCTCCACCCGCAGCTCTCAGAGAAGGCGGATCTACAGTGCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 72 bp TCAGGGCACATGGGGCACTTGTGTTTCTGGTTGGCGTaGGCTTGGTGGATGTGGGCAAGCAGCGTGCTCTCA +
Preference number: 6 (lower is better)
Translates to: SGHMGHLCFWLA*AWWMWASSVLS
Trigger: TGAGAGCACGCTGCTTGCCCACATCCACCAAGCCCACGCCAACCAGAAACACAAGTGCCCCATGTGCCCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 72 bp GAGAACTGCTCAGGGCACATGGGGCACTTGTGTTTCTaGTTGGCGTGGGCTTGGTGGATGTGGGCAAGCAGC +
Preference number: 6 (lower is better)
Translates to: ENCSGHMGHLCF*LAWAWWMWASS
Trigger: GCTGCTTGCCCACATCCACCAAGCCCACGCCAACCAGAAACACAAGTGCCCCATGTGCCCTGAGCAGTTCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 72 bp TCCAGCTTGGTGCTCCCCACACTGCAATGCGCCTGTTaGATGTGCTCTGTGAGCGAGGACTCGGTGAGGAAG +
Preference number: 6 (lower is better)
Translates to: SSLVLPTLQCAC*MCSVSEDSVRK
Trigger: CTTCCTCACCGAGTCCTCGCTCACAGAGCACATCCAACAGGCGCATTGCAGTGTGGGGAGCACCAAGCTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 72 bp CCTCGACGTCGGAGGAGACTGGGCTCTGCTCAGCCTTaGACTTCTTGCTGTGTGCCAGCGGGATGTTCTTGT +
Preference number: 6 (lower is better)
Translates to: PRRRRRLGSAQP*TSCCVPAGCSC
Trigger: ACAAGAACATCCCGCTGGCACACAGCAAGAAGTCCAAGGCTGAGCAGAGCCCAGTCTCCTCCGACGTCGAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CAA 72 bp CCCGTGTGCAGCTTGATGTGCCGGTCTCGGCTCCTCTaGTGTTTGAAGAGGCGGCTGCAGAAGGTGCACTTG +
Preference number: 6 (lower is better)
Translates to: PVCSLMCRSRLL*CLKRRLQKVHL
Trigger: CAAGTGCACCTTCTGCAGCCGCCTCTTCAAACACAAGAGGAGCCGAGACCGGCACATCAAGCTGCACACGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
ENSMUST00000174764.2
CDS CAA 72 bp CTCCAGCTTGGTGCTCCCCACACTGCAATGCGCCTGTaGGATGTGCTCTGTGAGCGAGGACTCGGTGAGGAA +
Preference number: 6 (lower is better)
Translates to: LQLGAPHTAMRL*DVLCERGLGEE
Trigger: TTCCTCACCGAGTCCTCGCTCACAGAGCACATCCAACAGGCGCATTGCAGTGTGGGGAGCACCAAGCTGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CAA 90 bp TTCTTGTCGCCCGTGTGCAGCTTGATGTGCCGGTCTCGGCTCCTCTaGTGTTTGAAGAGGCGGCTGCAGAAGGTGCACTTGAACGGCAGC +
Preference number: 6 (lower is better)
Translates to: FLSPVCSLMCRSRLL*CLKRRLQKVHLNGS
Trigger: GCTGCCGTTCAAGTGCACCTTCTGCAGCCGCCTCTTCAAACACAAGAGGAGCCGAGACCGGCACATCAAGCTGCACACGGGCGACAAGAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
ENSMUST00000174764.2
CDS CAA 90 bp TACACACCCTCCACAGAGGAGAACTGCTCAGGGCACATGGGGCACTaGTGTTTCTGGTTGGCGTGGGCTTGGTGGATGTGGGCAAGCAGC +
Preference number: 6 (lower is better)
Translates to: YTPSTEENCSGHMGH*CFWLAWAWWMWASS
Trigger: GCTGCTTGCCCACATCCACCAAGCCCACGCCAACCAGAAACACAAGTGCCCCATGTGCCCTGAGCAGTTCTCCTCTGTGGAGGGTGTGTA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CAA 90 bp AACAGGAGACTCCAGCTTGGTGCTCCCCACACTGCAATGCGCCTGTaGGATGTGCTCTGTGAGCGAGGACTCGGTGAGGAAGCCCATGGA +
Preference number: 6 (lower is better)
Translates to: NRRLQLGAPHTAMRL*DVLCERGLGEEAHG
Trigger: TCCATGGGCTTCCTCACCGAGTCCTCGCTCACAGAGCACATCCAACAGGCGCATTGCAGTGTGGGGAGCACCAAGCTGGAGTCTCCTGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CAA 90 bp CTGCTCAGGGCACATGGGGCACTTGTGTTTCTGGTTGGCGTGGGCTaGGTGGATGTGGGCAAGCAGCGTGCTCTCATCAACAAAGACCTC +
Preference number: 6 (lower is better)
Translates to: LLRAHGALVFLVGVG*VDVGKQRALINKDL
Trigger: GAGGTCTTTGTTGATGAGAGCACGCTGCTTGCCCACATCCACCAAGCCCACGCCAACCAGAAACACAAGTGCCCCATGTGCCCTGAGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS GCA 72 bp GCATTGGGGCCACAGTGCGAGACTCGAATGTGCTCCTaGAGGCTGTTGATGTCAGCAAACATCTCGGGGCAG +
Preference number: 6 (lower is better)
Translates to: ALGPQCETRMCS*RLLMSANISGQ
Trigger: CTGCCCCGAGATGTTTGCTGACATCAACAGCCTGCAGGAGCACATTCGAGTCTCGCACTGTGGCCCCAATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS GCA 72 bp CAGGCTGTGCAGCGGTACATCTTCTTCTCGTTGCTGTaGTTCACGGCCAGGTGCACCTGGATGGACACCTTG +
Preference number: 6 (lower is better)
Translates to: QAVQRYIFFSLL*FTARCTWMDTL
Trigger: CAAGGTGTCCATCCAGGTGCACCTGGCCGTGAAGCACAGCAACGAGAAGAAGATGTACCGCTGCACAGCCTG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS GCA 72 bp CCATGGATCTTGAGTTCCAGCGTCGAGGTGACAGTCTaGATACAGACCACACAGCGGAAGCCGGTGAGGGAG +
Preference number: 6 (lower is better)
Translates to: PWILSSSVEVTV*IQTTQRKPVRE
Trigger: CTCCCTCACCGGCTTCCGCTGTGTGGTCTGTATGCAGACTGTCACCTCGACGCTGGAACTCAAGATCCATGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS GCA 72 bp CCACTGGTCTCTGGTGTAAGATCACGGTGGTCCACCTaGATGTGGCTCTCCAGGTCCTCAGCACTCTCGAAC +
Preference number: 6 (lower is better)
Translates to: PLVSGVRSRWST*MWLSRSSALSN
Trigger: GTTCGAGAGTGCTGAGGACCTGGAGAGCCACATGCAGGTGGACCACCGTGATCTTACACCAGAGACCAGTGG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 72 bp GACTTGTCACGCTGTTCCTGTCTTCCAGCGCACGGCTaGTTTTCCGATCACACTCTGGCTCTCCTTCCAGGC +
Preference number: 6 (lower is better)
Translates to: DLSRCSCLPAHG*FSDHTLALLPG
Trigger: GCCTGGAAGGAGAGCCAGAGTGTGATCGGAAAACCAGCCGTGCGCTGGAAGACAGGAACAGCGTGACAAGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000174764.2
CDS CAA 72 bp TGCAGCTTGATGTGCCGGTCTCGGCTCCTCTTGTGTTaGAAGAGGCGGCTGCAGAAGGTGCACTTGAACGGC +
Preference number: 6 (lower is better)
Translates to: CSLMCRSRLLLC*KRRLQKVHLNG
Trigger: GCCGTTCAAGTGCACCTTCTGCAGCCGCCTCTTCAAACACAAGAGGAGCCGAGACCGGCACATCAAGCTGCA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
ENSMUST00000174764.2
CDS CAA 72 bp GCACATGGGGCACTTGTGTTTCTGGTTGGCGTGGGCTaGGTGGATGTGGGCAAGCAGCGTGCTCTCATCAAC +
Preference number: 6 (lower is better)
Translates to: AHGALVFLVGVG*VDVGKQRALIN
Trigger: GTTGATGAGAGCACGCTGCTTGCCCACATCCACCAAGCCCACGCCAACCAGAAACACAAGTGCCCCATGTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CAA 72 bp TCCACAGAGGAGAACTGCTCAGGGCACATGGGGCACTaGTGTTTCTGGTTGGCGTGGGCTTGGTGGATGTGG +
Preference number: 6 (lower is better)
Translates to: STEENCSGHMGH*CFWLAWAWWMW
Trigger: CCACATCCACCAAGCCCACGCCAACCAGAAACACAAGTGCCCCATGTGCCCTGAGCAGTTCTCCTCTGTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CAA 72 bp TGCCCGTGCACGGCAAAGATATGCTGTTGCAGCTTGTaGGCCTGGACGAAGACTGTGAAGCAGACGGGGCAC +
Preference number: 6 (lower is better)
Translates to: CPCTAKICCCSL*AWTKTVKQTGH
Trigger: GTGCCCCGTCTGCTTCACAGTCTTCGTCCAGGCCAACAAGCTGCAACAGCATATCTTTGCCGTGCACGGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CAA 72 bp TCCTGCCCGTGCACGGCAAAGATATGCTGTTGCAGCTaGTTGGCCTGGACGAAGACTGTGAAGCAGACGGGG +
Preference number: 6 (lower is better)
Translates to: SCPCTAKICCCS*LAWTKTVKQTG
Trigger: CCCCGTCTGCTTCACAGTCTTCGTCCAGGCCAACAAGCTGCAACAGCATATCTTTGCCGTGCACGGGCAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS TCA 72 bp AGGCGTGGCTCTTGTGCAGCTTGCGCACATGCTCATTaGGGTTGTAGAGCGTGGGCATGGAGTCAAGGCAGA +
Preference number: 6 (lower is better)
Translates to: RRGSCAACAHAH*GCRAWAWSQGR
Trigger: TCTGCCTTGACTCCATGCCCACGCTCTACAACCTCAATGAGCATGTGCGCAAGCTGCACAAGAGCCACGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS TCA 72 bp AGTTGCAGTGGAAGGCAGAGATGTTGCCAAACTGCATaGCGGGGTAGGCGTGGCTCTTGTGCAGCTTGCGCA +
Preference number: 6 (lower is better)
Translates to: SCSGRQRCCQTA*RGRRGSCAACA
Trigger: TGCGCAAGCTGCACAAGAGCCACGCCTACCCCGTCATGCAGTTTGGCAACATCTCTGCCTTCCACTGCAACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS TCA 72 bp CTTATGGCTGCCCTTTATGAATTCTGCCTTCTTGCGTaGGCCGTCGTCCTCGCCGGGCCGGATGTTGTGATC +
Preference number: 6 (lower is better)
Translates to: LMAALYEFCLLA*AVVLAGPDVVI
Trigger: GATCACAACATCCGGCCCGGCGAGGACGACGGCTCACGCAAGAAGGCAGAATTCATAAAGGGCAGCCATAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS GCA 72 bp TCGCCGAGGCCGAGGTCACAACCATCTCCTATCATCTaGGTAGGTGACGCAACATCCTTGCTGGAGGGAGAT +
Preference number: 6 (lower is better)
Translates to: SPRPRSQPSPII*VGDATSLLEGD
Trigger: ATCTCCCTCCAGCAAGGATGTTGCGTCACCTACGCAGATGATAGGAGATGGTTGTGACCTCGGCCTCGGCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000174249.2
ENSMUST00000174764.2
CDS GCA 72 bp TCCAGGTGGCAGTACACACCCTCCACAGAGGAGAACTaGTCAGGGCACATGGGGCACTTGTGTTTCTGGTTG +
Preference number: 6 (lower is better)
Translates to: SRWQYTPSTEEN*SGHMGHLCFWL
Trigger: CAACCAGAAACACAAGTGCCCCATGTGCCCTGAGCAGTTCTCCTCTGTGGAGGGTGTGTACTGCCACCTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS GCA 72 bp GGGTTGGCATTGGGGCCACAGTGCGAGACTCGAATGTaGTCCTGCAGGCTGTTGATGTCAGCAAACATCTCG +
Preference number: 6 (lower is better)
Translates to: GLALGPQCETRM*SCRLLMSANIS
Trigger: CGAGATGTTTGCTGACATCAACAGCCTGCAGGAGCACATTCGAGTCTCGCACTGTGGCCCCAATGCCAACCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS GCA 72 bp CGGAGGAGACTGGGCTCTGCTCAGCCTTGGACTTCTTaGTGTGTGCCAGCGGGATGTTCTTGTGGTTCTCTT +
Preference number: 6 (lower is better)
Translates to: RRRLGSAQPWTS*CVPAGCSCGSL
Trigger: AAGAGAACCACAAGAACATCCCGCTGGCACACAGCAAGAAGTCCAAGGCTGAGCAGAGCCCAGTCTCCTCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS GCA 72 bp AGTTGCAGGCTGTGCAGCGGTACATCTTCTTCTCGTTaGTGTGCTTCACGGCCAGGTGCACCTGGATGGACA +
Preference number: 6 (lower is better)
Translates to: SCRLCSGTSSSR*CASRPGAPGWT
Trigger: TGTCCATCCAGGTGCACCTGGCCGTGAAGCACAGCAACGAGAAGAAGATGTACCGCTGCACAGCCTGCAACT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS GCA 72 bp CCTCACTCTGCAGTGGCATTTTGCAGATGCGACAGGTaGCCGTGTCCAGACTCTTGCTGTGGGTCACCTTGT +
Preference number: 6 (lower is better)
Translates to: PHSAVAFCRCDR*PCPDSCCGSPC
Trigger: ACAAGGTGACCCACAGCAAGAGTCTGGACACGGGCACCTGTCGCATCTGCAAAATGCCACTGCAGAGTGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 72 bp CACATGGGGCACTTGTGTTTCTGGTTGGCGTGGGCTTaGTGGATGTGGGCAAGCAGCGTGCTCTCATCAACA +
Preference number: 6 (lower is better)
Translates to: HMGHLCFWLAWA*WMWASSVLSST
Trigger: TGTTGATGAGAGCACGCTGCTTGCCCACATCCACCAAGCCCACGCCAACCAGAAACACAAGTGCCCCATGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 72 bp AAGCCGGTGAGGGAGTTCCGTAAGTCGGGGTGCATCTaGCAGTGCTCAATGAACTCCTCCTCACTCTGCAGT +
Preference number: 6 (lower is better)
Translates to: KPVREFRKSGCI*QCSMNSSSLCS
Trigger: ACTGCAGAGTGAGGAGGAGTTCATTGAGCACTGCCAGATGCACCCCGACTTACGGAACTCCCTCACCGGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 72 bp GTCTCTGGTGTAAGATCACGGTGGTCCACCTGCATGTaGCTCTCCAGGTCCTCAGCACTCTCGAACTTCACG +
Preference number: 6 (lower is better)
Translates to: VSGVRSRWSTCM*LSRSSALSNFT
Trigger: CGTGAAGTTCGAGAGTGCTGAGGACCTGGAGAGCCACATGCAGGTGGACCACCGTGATCTTACACCAGAGAC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CAA 72 bp TCGGAGGAGACTGGGCTCTGCTCAGCCTTGGACTTCTaGCTGTGTGCCAGCGGGATGTTCTTGTGGTTCTCT +
Preference number: 6 (lower is better)
Translates to: SEETGLCSALDF*LCASGMFLWFS
Trigger: AGAGAACCACAAGAACATCCCGCTGGCACACAGCAAGAAGTCCAAGGCTGAGCAGAGCCCAGTCTCCTCCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CAA 72 bp ATTTTGCAGATGCGACAGGTGCCCGTGTCCAGACTCTaGCTGTGGGTCACCTTGTGCTCGGTGAGTGTCAGC +
Preference number: 6 (lower is better)
Translates to: ILQMRQVPVSRL*LWVTLCSVSVS
Trigger: GCTGACACTCACCGAGCACAAGGTGACCCACAGCAAGAGTCTGGACACGGGCACCTGTCGCATCTGCAAAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CAA 90 bp AGGTCACAACCATCTCCTATCATCTGCGTAGGTGACGCAACATCCTaGCTGGAGGGAGATGAAGCCACCCAGGAGAGCTGTGGGTCGTCA +
Preference number: 6 (lower is better)
Translates to: RSQPSPIICVGDATS*LEGDEATQESCGSS
Trigger: TGACGACCCACAGCTCTCCTGGGTGGCTTCATCTCCCTCCAGCAAGGATGTTGCGTCACCTACGCAGATGATAGGAGATGGTTGTGACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000174249.2
ENSMUST00000174764.2
CDS CAA 90 bp ATCTGGCAGTGCTCAATGAACTCCTCCTCACTCTGCAGTGGCATTTaGCAGATGCGACAGGTGCCCGTGTCCAGACTCTTGCTGTGGGTC +
Preference number: 6 (lower is better)
Translates to: IWQCSMNSSSLCSGI*QMRQVPVSRLLLWV
Trigger: GACCCACAGCAAGAGTCTGGACACGGGCACCTGTCGCATCTGCAAAATGCCACTGCAGAGTGAGGAGGAGTTCATTGAGCACTGCCAGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CAA 90 bp TTGTCCTCCTGCCCGTGCACGGCAAAGATATGCTGTTGCAGCTTGTaGGCCTGGACGAAGACTGTGAAGCAGACGGGGCACTTGAAGGTA +
Preference number: 6 (lower is better)
Translates to: LSSCPCTAKICCCSL*AWTKTVKQTGHLKV
Trigger: TACCTTCAAGTGCCCCGTCTGCTTCACAGTCTTCGTCCAGGCCAACAAGCTGCAACAGCATATCTTTGCCGTGCACGGGCAGGAGGACAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CAA 90 bp GTCGTAGATTTTGTCCTCCTGCCCGTGCACGGCAAAGATATGCTGTaGCAGCTTGTTGGCCTGGACGAAGACTGTGAAGCAGACGGGGCA +
Preference number: 6 (lower is better)
Translates to: VVDFVLLPVHGKDML*QLVGLDEDCEADGA
Trigger: TGCCCCGTCTGCTTCACAGTCTTCGTCCAGGCCAACAAGCTGCAACAGCATATCTTTGCCGTGCACGGGCAGGAGGACAAAATCTACGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS GCA 72 bp TGCATCTGGCAGTGCTCAATGAACTCCTCCTCACTCTaGAGTGGCATTTTGCAGATGCGACAGGTGCCCGTG +
Preference number: 6 (lower is better)
Translates to: CIWQCSMNSSSL*SGILQMRQVPV
Trigger: CACGGGCACCTGTCGCATCTGCAAAATGCCACTGCAGAGTGAGGAGGAGTTCATTGAGCACTGCCAGATGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS GCA 72 bp GTGAGGGAGTTCCGTAAGTCGGGGTGCATCTGGCAGTaGTCAATGAACTCCTCCTCACTCTGCAGTGGCATT +
Preference number: 6 (lower is better)
Translates to: VREFRKSGCIWQ*SMNSSSLCSGI
Trigger: AATGCCACTGCAGAGTGAGGAGGAGTTCATTGAGCACTGCCAGATGCACCCCGACTTACGGAACTCCCTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS GCA 72 bp TTGTCCTCCTGCCCGTGCACGGCAAAGATATGCTGTTaGAGCTTGTTGGCCTGGACGAAGACTGTGAAGCAG +
Preference number: 6 (lower is better)
Translates to: LSSCPCTAKICC*SLLAWTKTVKQ
Trigger: CTGCTTCACAGTCTTCGTCCAGGCCAACAAGCTGCAACAGCATATCTTTGCCGTGCACGGGCAGGAGGACAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 72 bp AGCAGCGTGCTCTCATCAACAAAGACCTCTGGGCAGTaGATGCACTGTAGATCCGCCTTCTCTGAGAGCTGC +
Preference number: 6 (lower is better)
Translates to: SSVLSSTKTSGQ*MHCRSAFSESC
Trigger: GCAGCTCTCAGAGAAGGCGGATCTACAGTGCATCCACTGCCCAGAGGTCTTTGTTGATGAGAGCACGCTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 72 bp ATGGGGCACTTGTGTTTCTGGTTGGCGTGGGCTTGGTaGATGTGGGCAAGCAGCGTGCTCTCATCAACAAAG +
Preference number: 6 (lower is better)
Translates to: MGHLCFWLAWAW*MWASSVLSSTK
Trigger: CTTTGTTGATGAGAGCACGCTGCTTGCCCACATCCACCAAGCCCACGCCAACCAGAAACACAAGTGCCCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CAA 90 bp ACCTCGACGTCGGAGGAGACTGGGCTCTGCTCAGCCTTGGACTTCTaGCTGTGTGCCAGCGGGATGTTCTTGTGGTTCTCTTTAATGTGT +
Preference number: 6 (lower is better)
Translates to: TSTSEETGLCSALDF*LCASGMFLWFSLMC
Trigger: ACACATTAAAGAGAACCACAAGAACATCCCGCTGGCACACAGCAAGAAGTCCAAGGCTGAGCAGAGCCCAGTCTCCTCCGACGTCGAGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CAA 90 bp ATTTTGTCCTCCTGCCCGTGCACGGCAAAGATATGCTGTTGCAGCTaGTTGGCCTGGACGAAGACTGTGAAGCAGACGGGGCACTTGAAG +
Preference number: 6 (lower is better)
Translates to: ILSSCPCTAKICCCS*LAWTKTVKQTGHLK
Trigger: CTTCAAGTGCCCCGTCTGCTTCACAGTCTTCGTCCAGGCCAACAAGCTGCAACAGCATATCTTTGCCGTGCACGGGCAGGAGGACAAAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS TCA 72 bp CACAGTGCGAGACTCGAATGTGCTCCTGCAGGCTGTTaGTGTCAGCAAACATCTCGGGGCAGTAGTTGCAGT +
Preference number: 6 (lower is better)
Translates to: HSARLECAPAGC*CQQTSRGSSCS
Trigger: ACTGCAACTACTGCCCCGAGATGTTTGCTGACATCAACAGCCTGCAGGAGCACATTCGAGTCTCGCACTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 72 bp CACTTGTGTTTCTGGTTGGCGTGGGCTTGGTGGATGTaGGCAAGCAGCGTGCTCTCATCAACAAAGACCTCT +
Preference number: 6 (lower is better)
Translates to: HLCFWLAWAWWM*ASSVLSSTKTS
Trigger: AGAGGTCTTTGTTGATGAGAGCACGCTGCTTGCCCACATCCACCAAGCCCACGCCAACCAGAAACACAAGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 72 bp CTCTCGTTCTCGAACGTCATCTGGCACTTGATACACTaGTACGTCTTCTTCCTGGGCACTGGTGACGTCTGG +
Preference number: 6 (lower is better)
Translates to: LSFSNVIWHLIH*YVFFLGTGDVW
Trigger: CCAGACGTCACCAGTGCCCAGGAAGAAGACGTACCAGTGTATCAAGTGCCAGATGACGTTCGAGAACGAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 72 bp TGCACGGCAAAGATATGCTGTTGCAGCTTGTTGGCCTaGACGAAGACTGTGAAGCAGACGGGGCACTTGAAG +
Preference number: 6 (lower is better)
Translates to: CTAKICCCSLLA*TKTVKQTGHLK
Trigger: CTTCAAGTGCCCCGTCTGCTTCACAGTCTTCGTCCAGGCCAACAAGCTGCAACAGCATATCTTTGCCGTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CAA 72 bp CACATGAAGTCGTCCTTCTTGGCTTCCTTCTCCGACTaGGCCAGGTGTTCCTTGTTCTTCTTGTGGGCCTGC +
Preference number: 6 (lower is better)
Translates to: HMKSSFLASFSD*ARCSLFFLWAC
Trigger: GCAGGCCCACAAGAAGAACAAGGAACACCTGGCCAAGTCGGAGAAGGAAGCCAAGAAGGACGACTTCATGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CAA 72 bp TTTGTCCTCCTGCCCGTGCACGGCAAAGATATGCTGTaGCAGCTTGTTGGCCTGGACGAAGACTGTGAAGCA +
Preference number: 6 (lower is better)
Translates to: FVLLPVHGKDML*QLVGLDEDCEA
Trigger: TGCTTCACAGTCTTCGTCCAGGCCAACAAGCTGCAACAGCATATCTTTGCCGTGCACGGGCAGGAGGACAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CAA 72 bp GCCAGCGAGAAGTCCGAGGCCTCCCCCTCTTCAACTTaGTACGAGAAGATAGGTAAAGGACCGCTCTCCTTA +
Preference number: 6 (lower is better)
Translates to: ASEKSEASPSST*YEKIGKGPLSL
Trigger: TAAGGAGAGCGGTCCTTTACCTATCTTCTCGTACAAAGTTGAAGAGGGGGAGGCCTCGGACTTCTCGCTGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000174764.2
CDS TCA 72 bp AGTTCCGTAAGTCGGGGTGCATCTGGCAGTGCTCAATaGACTCCTCCTCACTCTGCAGTGGCATTTTGCAGA +
Preference number: 6 (lower is better)
Translates to: SSVSRGASGSAQ*TPPHSAVAFCR
Trigger: TCTGCAAAATGCCACTGCAGAGTGAGGAGGAGTTCATTGAGCACTGCCAGATGCACCCCGACTTACGGAACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS TCA 72 bp ATGCCTTCCTCGATCATGTGGTTGGCGACGTGGATCTaGATCTCTCTCTCGTTCTCGAACGTCATCTGGCAC +
Preference number: 6 (lower is better)
Translates to: MPSSIMWLATWI*ISLSFSNVIWH
Trigger: GTGCCAGATGACGTTCGAGAACGAGAGAGAGATTCAGATCCACGTCGCCAACCACATGATCGAGGAAGGCAT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS GCA 72 bp GACTGGGCTCTGCTCAGCCTTGGACTTCTTGCTGTGTaGCAGCGGGATGTTCTTGTGGTTCTCTTTAATGTG +
Preference number: 6 (lower is better)
Translates to: DWALLSLGLLAV*QRDVLVVLFNV
Trigger: CACATTAAAGAGAACCACAAGAACATCCCGCTGGCACACAGCAAGAAGTCCAAGGCTGAGCAGAGCCCAGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CAA 90 bp ACTCATCTTCCACGTCTTCATCGTCCTCATTTCTCTCCTCTTGACTaGTCACGCTGTTCCTGTCTTCCAGCGCACGGCTGGTTTTCCGAT +
Preference number: 6 (lower is better)
Translates to: THLPRLHRPHFSPLD*SRCSCLPAHGWFSD
Trigger: ATCGGAAAACCAGCCGTGCGCTGGAAGACAGGAACAGCGTGACAAGTCAAGAGGAGAGAAATGAGGACGATGAAGACGTGGAAGATGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000174764.2
CDS TCA 72 bp TGGAAGCTCTCGAAGTTGGAGAACTTGAGGTCGCACTaGTTGCAGGGGTACTCGCCATTAGAGATGGAGTTG +
Preference number: 6 (lower is better)
Translates to: WKLSKLENLRSH*LQGYSPLEMEL
Trigger: CAACTCCATCTCTAATGGCGAGTACCCCTGCAATCAGTGCGACCTCAAGTTCTCCAACTTCGAGAGCTTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CCA 72 bp GGGGAGTCGAACATCTGGTTGCACAGTTTACACTCATaGTTAATGCCTTCCTCGATCATGTGGTTGGCGACG +
Preference number: 6 (lower is better)
Translates to: GESNIWLHSLHS*LMPSSIMWLAT
Trigger: CGTCGCCAACCACATGATCGAGGAAGGCATTAACCATGAGTGTAAACTGTGCAACCAGATGTTCGACTCCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CAA 90 bp CTCTGCTCAGCCTTGGACTTCTTGCTGTGTGCCAGCGGGATGTTCTaGTGGTTCTCTTTAATGTGTTTAGTGAGCTTCAGGATGGAGCCA +
Preference number: 6 (lower is better)
Translates to: LCSALDFLLCASGMF*WFSLMCLVSFRMEP
Trigger: TGGCTCCATCCTGAAGCTCACTAAACACATTAAAGAGAACCACAAGAACATCCCGCTGGCACACAGCAAGAAGTCCAAGGCTGAGCAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS CAA 90 bp CTGCCAGAGACTCGAAGTCCTGCTGACAGTGATCGCAGGTGTAAATaGACTCATCTTCCACGTCTTCATCGTCCTCATTTCTCTCCTCTT +
Preference number: 6 (lower is better)
Translates to: LPETRSPADSDRRCK*THLPRLHRPHFSPL
Trigger: AAGAGGAGAGAAATGAGGACGATGAAGACGTGGAAGATGAGTCAATTTACACCTGCGATCACTGTCAGCAGGACTTCGAGTCTCTGGCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000174764.2
CDS CAA 72 bp GCCTTGGACTTCTTGCTGTGTGCCAGCGGGATGTTCTaGTGGTTCTCTTTAATGTGTTTAGTGAGCTTCAGG +
Preference number: 6 (lower is better)
Translates to: ALDFLLCASGMF*WFSLMCLVSFR
Trigger: CCTGAAGCTCACTAAACACATTAAAGAGAACCACAAGAACATCCCGCTGGCACACAGCAAGAAGTCCAAGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000165770.9
CDS TCA 72 bp CTCGAAGTCCTGCTGACAGTGATCGCAGGTGTAAATTaGCTCATCTTCCACGTCTTCATCGTCCTCATTTCT +
Preference number: 6 (lower is better)
Translates to: LEVLLTVIAGVN*LIFHVFIVLIS
Trigger: AGAAATGAGGACGATGAAGACGTGGAAGATGAGTCAATTTACACCTGCGATCACTGTCAGCAGGACTTCGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000174764.2
CDS CAA 72 bp ACTCGAAGTCCTGCTGACAGTGATCGCAGGTGTAAATaGACTCATCTTCCACGTCTTCATCGTCCTCATTTC +
Preference number: 6 (lower is better)
Translates to: TRSPADSDRRCK*THLPRLHRPHF
Trigger: GAAATGAGGACGATGAAGACGTGGAAGATGAGTCAATTTACACCTGCGATCACTGTCAGCAGGACTTCGAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052250.15
ENSMUST00000109655.9
ENSMUST00000174764.2