RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZFP41 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000047003

Ensembl transcript IDs: ENSMUST00000054555.10, ENSMUST00000161785.8

Found 213 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CGTCCAAAAGGCCTCCCTGAGCTCGCCCACCTACAGCCTTCCTGTTaGCAGTGGGTTCTGTGGCGACGAAAGCCTCCCTGGAGCATGCCC +
Preference number: 1 (lower is better)
Translates to: RPKGLPELAHLQPSC*QWVLWRRKPPWSMP
Trigger: GGGCATGCTCCAGGGAGGCTTTCGTCGCCACAGAACCCACTGGCAACAGGAAGGCTGTAGGTGGGCGAGCTCAGGGAGGCCTTTTGGACG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR TCA 90 bp GCTTCTGCTGCCTGCAAGCCTAACTCAGTCCAGTCCCTGGCTTCCTaGGTAACGCGGCACCAGTGCTCCTGTTGCCGGGCTGGGGTTGAC +
Preference number: 1 (lower is better)
Translates to: ASAACKPNSVQSLAS*VTRHQCSCCRAGVD
Trigger: GTCAACCCCAGCCCGGCAACAGGAGCACTGGTGCCGCGTTACTCAGGAAGCCAGGGACTGGACTGAGTTAGGCTTGCAGGCAGCAGAAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR CCA 90 bp AAAGGCCTCCCTGAGCTCGCCCACCTACAGCCTTCCTGTTGCCAGTaGGTTCTGTGGCGACGAAAGCCTCCCTGGAGCATGCCCAGTGTC +
Preference number: 1 (lower is better)
Translates to: KGLPELAHLQPSCCQ*VLWRRKPPWSMPSV
Trigger: GACACTGGGCATGCTCCAGGGAGGCTTTCGTCGCCACAGAACCCACTGGCAACAGGAAGGCTGTAGGTGGGCGAGCTCAGGGAGGCCTTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR TCA 90 bp CCACCAGATCATGAGGTGGCTGAGGTGAGATGTGGACAAGCCAGCTaGGTGCTACCAGTATGCGGGTGCTGGGGACCCTCTGCAGGTCCA +
Preference number: 1 (lower is better)
Translates to: PPDHEVAEVRCGQAS*VLPVCGCWGPSAGP
Trigger: TGGACCTGCAGAGGGTCCCCAGCACCCGCATACTGGTAGCACTCAGCTGGCTTGTCCACATCTCACCTCAGCCACCTCATGATCTGGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR GCA 90 bp CCTGTTGCCAGTGGGTTCTGTGGCGACGAAAGCCTCCCTGGAGCATaGCCAGTGTCTCTGCTGTGCTCTGTAGAGGTAGACACTGACTCC +
Preference number: 1 (lower is better)
Translates to: PVASGFCGDESLPGA*PVSLLCSVEVDTDS
Trigger: GGAGTCAGTGTCTACCTCTACAGAGCACAGCAGAGACACTGGGCATGCTCCAGGGAGGCTTTCGTCGCCACAGAACCCACTGGCAACAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR CCA 90 bp CAGCCTTCCTGTTGCCAGTGGGTTCTGTGGCGACGAAAGCCTCCCTaGAGCATGCCCAGTGTCTCTGCTGTGCTCTGTAGAGGTAGACAC +
Preference number: 1 (lower is better)
Translates to: QPSCCQWVLWRRKPP*SMPSVSAVLCRGRH
Trigger: GTGTCTACCTCTACAGAGCACAGCAGAGACACTGGGCATGCTCCAGGGAGGCTTTCGTCGCCACAGAACCCACTGGCAACAGGAAGGCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR GCA 90 bp TGGGGACCCTCTGCAGGTCCAAAGCCAAGTGACTGCAGGCCCAGATaGAGGGAAACAGACACACTTAGGTGTTTCTGGGAGCTGCCCAGT +
Preference number: 1 (lower is better)
Translates to: WGPSAGPKPSDCRPR*RETDTLRCFWELPS
Trigger: ACTGGGCAGCTCCCAGAAACACCTAAGTGTGTCTGTTTCCCTGCATCTGGGCCTGCAGTCACTTGGCTTTGGACCTGCAGAGGGTCCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR GCA 90 bp GTATGCGGGTGCTGGGGACCCTCTGCAGGTCCAAAGCCAAGTGACTaGAGGCCCAGATGCAGGGAAACAGACACACTTAGGTGTTTCTGG +
Preference number: 1 (lower is better)
Translates to: VCGCWGPSAGPKPSD*RPRCRETDTLRCFW
Trigger: CCAGAAACACCTAAGTGTGTCTGTTTCCCTGCATCTGGGCCTGCAGTCACTTGGCTTTGGACCTGCAGAGGGTCCCCAGCACCCGCATAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR GCA 90 bp CCGTGGTTGGTGCAGACAGAGGCAGCAAAGGAAGGCAGTGGCCCTTaGCAACAGGGGTGTCTCTTTAGCTCTACAAAGTTCTCAGCGACC +
Preference number: 1 (lower is better)
Translates to: PWLVQTEAAKEGSGP*QQGCLFSSTKFSAT
Trigger: GGTCGCTGAGAACTTTGTAGAGCTAAAGAGACACCCCTGTTGGCAAGGGCCACTGCCTTCCTTTGCTGCCTCTGTCTGCACCAACCACGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR CCA 90 bp ACCTCACACAGCATCATCGTGGGGCAGACAGTAGACAGAGTCACGTaGTCTTGCCCTGCTGACCAGCAGGAAGTGGAATTGACCGGAATG +
Preference number: 1 (lower is better)
Translates to: TSHSIIVGQTVDRVT*SCPADQQEVELTGM
Trigger: CATTCCGGTCAATTCCACTTCCTGCTGGTCAGCAGGGCAAGACCACGTGACTCTGTCTACTGTCTGCCCCACGATGATGCTGTGTGAGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR CCA 90 bp GCAGTTGGGCTGCTCGGAACTCTGCAGGACAAGGCCCACTGGACATaGCAGCTAATAAGTGGACTGCCTGGGACTTCTAAGACATCTCTG +
Preference number: 1 (lower is better)
Translates to: AVGLLGTLQDKAHWT*QLISGLPGTSKTSL
Trigger: CAGAGATGTCTTAGAAGTCCCAGGCAGTCCACTTATTAGCTGCCATGTCCAGTGGGCCTTGTCCTGCAGAGTTCCGAGCAGCCCAACTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR TCA 90 bp TCCTGCCTCTGTTTCCTGAGTGTTGGGCATTTACCAGATTTGTGGTaGTCACAGTCTGGGGTCCCCCTAGGCCTCCAAGTTCACCTGGGA +
Preference number: 1 (lower is better)
Translates to: SCLCFLSVGHLPDLW*SQSGVPLGLQVHLG
Trigger: TCCCAGGTGAACTTGGAGGCCTAGGGGGACCCCAGACTGTGATCACCACAAATCTGGTAAATGCCCAACACTCAGGAAACAGAGGCAGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR GCA 90 bp GGCCCAGATGCAGGGAAACAGACACACTTAGGTGTTTCTGGGAGCTaGCCAGTGCAAGCATTAGTCCTACAGGATCTGAGTCAGGAGGTC +
Preference number: 1 (lower is better)
Translates to: GPDAGKQTHLGVSGS*PVQALVLQDLSQEV
Trigger: GACCTCCTGACTCAGATCCTGTAGGACTAATGCTTGCACTGGGCAGCTCCCAGAAACACCTAAGTGTGTCTGTTTCCCTGCATCTGGGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR CCA 90 bp GTTGTGAGCTGCCACGTGGGTACTGAGACTCAAACTTGTGTCCTCTaGGAGAGCCACCTCTCCAGATGCTCTTTGACAATGCTGTGGACG +
Preference number: 1 (lower is better)
Translates to: VVSCHVGTETQTCVL*ESHLSRCSLTMLWT
Trigger: CGTCCACAGCATTGTCAAAGAGCATCTGGAGAGGTGGCTCTCCCAGAGGACACAAGTTTGAGTCTCAGTACCCACGTGGCAGCTCACAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR TCA 90 bp GAAACAAGAAAGAGGAGGTTCCACCAGATCATGAGGTGGCTGAGGTaGGATGTGGACAAGCCAGCTGAGTGCTACCAGTATGCGGGTGCT +
Preference number: 1 (lower is better)
Translates to: ETRKRRFHQIMRWLR*DVDKPAECYQYAGA
Trigger: AGCACCCGCATACTGGTAGCACTCAGCTGGCTTGTCCACATCTCACCTCAGCCACCTCATGATCTGGTGGAACCTCCTCTTTCTTGTTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR TCA 90 bp GTGTCCCTTGCAGGATCACCCCTTGTTGAGAACAGCTGCCCTAAATaGAGAATGAATGGGCACTTCTCAGGTTTCCCTCACGGTCCCCAC +
Preference number: 1 (lower is better)
Translates to: VSLAGSPLVENSCPK*RMNGHFSGFPHGPH
Trigger: GTGGGGACCGTGAGGGAAACCTGAGAAGTGCCCATTCATTCTTCATTTAGGGCAGCTGTTCTCAACAAGGGGTGATCCTGCAAGGGACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR TCA 90 bp GGCACCAGTGCTCCTGTTGCCGGGCTGGGGTTGACCTGTGTACTGTaGGGTTTAGCTAAATCCTTGCTTCTTCTCACCAGATCCTCCAAA +
Preference number: 1 (lower is better)
Translates to: GTSAPVAGLGLTCVL*GLAKSLLLLTRSSK
Trigger: TTTGGAGGATCTGGTGAGAAGAAGCAAGGATTTAGCTAAACCTCACAGTACACAGGTCAACCCCAGCCCGGCAACAGGAGCACTGGTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR TCA 90 bp TCAAGATCCCTGATTCCGAGTCTGGGATTTCCCAGGGATCCTGGATaGGCTCAAGACACCCCGGGAAAAGACCACAGACCCAATCCAGAT +
Preference number: 1 (lower is better)
Translates to: SRSLIPSLGFPRDPG*AQDTPGKDHRPNPD
Trigger: ATCTGGATTGGGTCTGTGGTCTTTTCCCGGGGTGTCTTGAGCTCATCCAGGATCCCTGGGAAATCCCAGACTCGGAATCAGGGATCTTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR CCA 90 bp GACTGCAGGCCCAGATGCAGGGAAACAGACACACTTAGGTGTTTCTaGGAGCTGCCCAGTGCAAGCATTAGTCCTACAGGATCTGAGTCA +
Preference number: 1 (lower is better)
Translates to: DCRPRCRETDTLRCF*ELPSASISPTGSES
Trigger: TGACTCAGATCCTGTAGGACTAATGCTTGCACTGGGCAGCTCCCAGAAACACCTAAGTGTGTCTGTTTCCCTGCATCTGGGCCTGCAGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR CCA 90 bp AATCTCAAGATCCCTGATTCCGAGTCTGGGATTTCCCAGGGATCCTaGATGAGCTCAAGACACCCCGGGAAAAGACCACAGACCCAATCC +
Preference number: 1 (lower is better)
Translates to: NLKIPDSESGISQGS*MSSRHPGKRPQTQS
Trigger: GGATTGGGTCTGTGGTCTTTTCCCGGGGTGTCTTGAGCTCATCCAGGATCCCTGGGAAATCCCAGACTCGGAATCAGGGATCTTGAGATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR CCA 90 bp TTTCCTGAGTGTTGGGCATTTACCAGATTTGTGGTGATCACAGTCTaGGGTCCCCCTAGGCCTCCAAGTTCACCTGGGACTTGTCTCCGT +
Preference number: 1 (lower is better)
Translates to: FPECWAFTRFVVITV*GPPRPPSSPGTCLR
Trigger: ACGGAGACAAGTCCCAGGTGAACTTGGAGGCCTAGGGGGACCCCAGACTGTGATCACCACAAATCTGGTAAATGCCCAACACTCAGGAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR TCA 90 bp TGGAGCATGCCCAGTGTCTCTGCTGTGCTCTGTAGAGGTAGACACTaGCTCCCGAGTTCTCTGAGCTTCTTACTGGAGAGATCTGCTCTA +
Preference number: 1 (lower is better)
Translates to: WSMPSVSAVLCRGRH*LPSSLSFLLERSAL
Trigger: TAGAGCAGATCTCTCCAGTAAGAAGCTCAGAGAACTCGGGAGTCAGTGTCTACCTCTACAGAGCACAGCAGAGACACTGGGCATGCTCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR TCA 90 bp ACAGAGCATCTGTCCCTTGAGTCAGGGTACACAGCCTTTCTTCCTTaGGCCCCAGTTCTGCCTTCCTTTTTAGGGCATCCTGATGTCCCA +
Preference number: 1 (lower is better)
Translates to: TEHLSLESGYTAFLP*APVLPSFLGHPDVP
Trigger: TGGGACATCAGGATGCCCTAAAAAGGAAGGCAGAACTGGGGCTCAAGGAAGAAAGGCTGTGTACCCTGACTCAAGGGACAGATGCTCTGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR TCA 90 bp CTCAAACTTGTGTCCTCTGGGAGAGCCACCTCTCCAGATGCTCTTTaGCAATGCTGTGGACGGCATCTGGAACAAAGGATCTCAAGGGTG +
Preference number: 1 (lower is better)
Translates to: LKLVSSGRATSPDAL*QCCGRHLEQRISRV
Trigger: CACCCTTGAGATCCTTTGTTCCAGATGCCGTCCACAGCATTGTCAAAGAGCATCTGGAGAGGTGGCTCTCCCAGAGGACACAAGTTTGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR TCA 90 bp GACCAGGCTGGCCTGAAATTCAGACAGCTTCCTGCCTCTGTTTCCTaGGTGTTGGGCATTTACCAGATTTGTGGTGATCACAGTCTGGGG +
Preference number: 1 (lower is better)
Translates to: DQAGLKFRQLPASVS*VLGIYQICGDHSLG
Trigger: CCCCAGACTGTGATCACCACAAATCTGGTAAATGCCCAACACTCAGGAAACAGAGGCAGGAAGCTGTCTGAATTTCAGGCCAGCCTGGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR GCA 90 bp GGAGGGAGAGGTGACAGGGAGGTAATAGTTAAAAGAAATAGTGTGTaGAAAGGTCTCAGGGTGTGGGAAGGGCTAGCAGCCCTATGGACC +
Preference number: 1 (lower is better)
Translates to: GGRGDREVIVKRNSV*KGLRVWEGLAALWT
Trigger: GGTCCATAGGGCTGCTAGCCCTTCCCACACCCTGAGACCTTTGCACACACTATTTCTTTTAACTATTACCTCCCTGTCACCTCTCCCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR TCA 90 bp AGCCTCTGTGGGCTCTCATGTCTGATGGGTAGATTTTCCTCTCAATaGCAGATGGGTGGCTGGATGAGCATACTGCGTAAGACCTCTGGA +
Preference number: 1 (lower is better)
Translates to: SLCGLSCLMGRFSSQ*QMGGWMSILRKTSG
Trigger: TCCAGAGGTCTTACGCAGTATGCTCATCCAGCCACCCATCTGTCATTGAGAGGAAAATCTACCCATCAGACATGAGAGCCCACAGAGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR GCA 90 bp ACTTGCAGAACAGAACAACTCACCAATTGGTCTGGGTTTCACATGTaGACTGGCTGTAAATTTTACTCCCTGCCACCCCCGAGAGAGGGC +
Preference number: 1 (lower is better)
Translates to: TCRTEQLTNWSGFHM*TGCKFYSLPPPREG
Trigger: GCCCTCTCTCGGGGGTGGCAGGGAGTAAAATTTACAGCCAGTGCACATGTGAAACCCAGACCAATTGGTGAGTTGTTCTGTTCTGCAAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR CCA 90 bp TCGCTGACAGAAGCAGGAGGCCTGTCTGACCTAAGACAGAGATTCTaGGGAAAACTTATAAACCTTCATGCTTGGGTCAGGCAAGCCAGG +
Preference number: 1 (lower is better)
Translates to: SLTEAGGLSDLRQRF*GKLINLHAWVRQAR
Trigger: CCTGGCTTGCCTGACCCAAGCATGAAGGTTTATAAGTTTTCCCCAGAATCTCTGTCTTAGGTCAGACAGGCCTCCTGCTTCTGTCAGCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR TCA 90 bp CAGAAGAGTGAAACTCTAGGATCACTGAAGTCAGCTGCACAGAGATaGGCAAGCAGGACTTGGTGCTGTCCTCAGAGTTGGTCAGAATGC +
Preference number: 1 (lower is better)
Translates to: QKSETLGSLKSAAQR*ASRTWCCPQSWSEC
Trigger: GCATTCTGACCAACTCTGAGGACAGCACCAAGTCCTGCTTGCTCATCTCTGTGCAGCTGACTTCAGTGATCCTAGAGTTTCACTCTTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR GCA 90 bp AGGGATCTACTTTTTGCCTATTGGTATGTCTGTGTACTACTTACATaGCTGGGCCTGTGGAGAGAAGGAGGAGGAGTCAGAGCTCCTGGA +
Preference number: 1 (lower is better)
Translates to: RDLLFAYWYVCVLLT*LGLWREGGGVRAPG
Trigger: TCCAGGAGCTCTGACTCCTCCTCCTTCTCTCCACAGGCCCAGGCATGTAAGTAGTACACAGACATACCAATAGGCAAAAAGTAGATCCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR CCA 90 bp TTTGCCTATTGGTATGTCTGTGTACTACTTACATGCCTGGGCCTGTaGAGAGAAGGAGGAGGAGTCAGAGCTCCTGGAACTGGAGTTACA +
Preference number: 1 (lower is better)
Translates to: FAYWYVCVLLTCLGL*REGGGVRAPGTGVT
Trigger: TGTAACTCCAGTTCCAGGAGCTCTGACTCCTCCTCCTTCTCTCCACAGGCCCAGGCATGTAAGTAGTACACAGACATACCAATAGGCAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR GCA 90 bp AGGAAGCCACCAAGTGCACAACAAAGCAGAATGTCTAGTCCAATGTaGACAACACTGACACAGCACCAAGGGTATTACACGGACGTAAGC +
Preference number: 1 (lower is better)
Translates to: RKPPSAQQSRMSSPM*TTLTQHQGYYTDVS
Trigger: GCTTACGTCCGTGTAATACCCTTGGTGCTGTGTCAGTGTTGTGCACATTGGACTAGACATTCTGCTTTGTTGTGCACTTGGTGGCTTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR GCA 90 bp ACTCTCCAGACGTGGCTGTCATTCCGAGTGTCCAGGATACACTGGTaGTTCTCAATGGGAGGGATCTACTTTTTGCCTATTGGTATGTCT +
Preference number: 1 (lower is better)
Translates to: TLQTWLSFRVSRIHW*FSMGGIYFLPIGMS
Trigger: AGACATACCAATAGGCAAAAAGTAGATCCCTCCCATTGAGAAGCACCAGTGTATCCTGGACACTCGGAATGACAGCCACGTCTGGAGAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR CCA 90 bp ATCTACTTTTTGCCTATTGGTATGTCTGTGTACTACTTACATGCCTaGGCCTGTGGAGAGAAGGAGGAGGAGTCAGAGCTCCTGGAACTG +
Preference number: 1 (lower is better)
Translates to: IYFLPIGMSVYYLHA*ACGEKEEESELLEL
Trigger: CAGTTCCAGGAGCTCTGACTCCTCCTCCTTCTCTCCACAGGCCCAGGCATGTAAGTAGTACACAGACATACCAATAGGCAAAAAGTAGAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR TCA 90 bp CAGAGAATAAAGAAAGCGCAGAGACAACCATCTGTGAGAAACCCATaGGACTTAAACAGCAGGCTCATTGAGCCAATGAGAGGGGCAGAG +
Preference number: 1 (lower is better)
Translates to: QRIKKAQRQPSVRNP*DLNSRLIEPMRGAE
Trigger: CTCTGCCCCTCTCATTGGCTCAATGAGCCTGCTGTTTAAGTCTCATGGGTTTCTCACAGATGGTTGTCTCTGCGCTTTCTTTATTCTCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR GCA 90 bp TGTCCAGGATACACTGGTGCTTCTCAATGGGAGGGATCTACTTTTTaGCTATTGGTATGTCTGTGTACTACTTACATGCCTGGGCCTGTG +
Preference number: 1 (lower is better)
Translates to: CPGYTGASQWEGSTF*LLVCLCTTYMPGPV
Trigger: CACAGGCCCAGGCATGTAAGTAGTACACAGACATACCAATAGGCAAAAAGTAGATCCCTCCCATTGAGAAGCACCAGTGTATCCTGGACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR CCA 90 bp CGTGGCTGTCATTCCGAGTGTCCAGGATACACTGGTGCTTCTCAATaGGAGGGATCTACTTTTTGCCTATTGGTATGTCTGTGTACTACT +
Preference number: 1 (lower is better)
Translates to: RGCHSECPGYTGASQ*EGSTFCLLVCLCTT
Trigger: AGTAGTACACAGACATACCAATAGGCAAAAAGTAGATCCCTCCCATTGAGAAGCACCAGTGTATCCTGGACACTCGGAATGACAGCCACG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR CCA 90 bp GATACACTGGTGCTTCTCAATGGGAGGGATCTACTTTTTGCCTATTaGTATGTCTGTGTACTACTTACATGCCTGGGCCTGTGGAGAGAA +
Preference number: 1 (lower is better)
Translates to: DTLVLLNGRDLLFAY*YVCVLLTCLGLWRE
Trigger: TTCTCTCCACAGGCCCAGGCATGTAAGTAGTACACAGACATACCAATAGGCAAAAAGTAGATCCCTCCCATTGAGAAGCACCAGTGTATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR CCA 90 bp ATCTCCCCAGATGTTGGGACTTGCAGAACAGAACAACTCACCAATTaGTCTGGGTTTCACATGTGCACTGGCTGTAAATTTTACTCCCTG +
Preference number: 1 (lower is better)
Translates to: ISPDVGTCRTEQLTN*SGFHMCTGCKFYSL
Trigger: CAGGGAGTAAAATTTACAGCCAGTGCACATGTGAAACCCAGACCAATTGGTGAGTTGTTCTGTTCTGCAAGTCCCAACATCTGGGGAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR GCA 90 bp AATTTATTGAAACCACTAGAAGGACACCAGTCTCTAAGACTGCTGTaGAAAGGGGTGAGGGCAGGATTTGTAATGGGAAAACCCACACTG +
Preference number: 1 (lower is better)
Translates to: NLLKPLEGHQSLRLL*KGVRAGFVMGKPTL
Trigger: CAGTGTGGGTTTTCCCATTACAAATCCTGCCCTCACCCCTTTGCACAGCAGTCTTAGAGACTGGTGTCCTTCTAGTGGTTTCAATAAATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR TCA 90 bp TGGGAGCTTATATTCCAGGGACTGGAGTCAAAGAGAAGTGGCTACTaGGTACCAAGATGTATACCTAGCATAAAAAGGGGTTTCTTCAGC +
Preference number: 1 (lower is better)
Translates to: WELIFQGLESKRSGY*VPRCIPSIKRGFFS
Trigger: GCTGAAGAAACCCCTTTTTATGCTAGGTATACATCTTGGTACTCAGTAGCCACTTCTCTTTGACTCCAGTCCCTGGAATATAAGCTCCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR TCA 90 bp CCTAATTGCATACAGCTAGCTGAGAGGATTGACTGGATACTGGCGTaGAGGTCTAGTGACCTTGTCCATCTTGTTTTTGAAGGAGTATCA +
Preference number: 1 (lower is better)
Translates to: PNCIQLAERIDWILA*RSSDLVHLVFEGVS
Trigger: TGATACTCCTTCAAAAACAAGATGGACAAGGTCACTAGACCTTCACGCCAGTATCCAGTCAATCCTCTCAGCTAGCTGTATGCAATTAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR CCA 90 bp ATTTGTCCACACTGTAGGGAACCCAACAGAGCACAGGAAGCGAGTTaGAAACACATTTACTTTTATGAGAAAATAGATGTCCGGGAGCAG +
Preference number: 1 (lower is better)
Translates to: ICPHCREPNRAQEAS*KHIYFYEKIDVREQ
Trigger: CTGCTCCCGGACATCTATTTTCTCATAAAAGTAAATGTGTTTCCAACTCGCTTCCTGTGCTCTGTTGGGTTCCCTACAGTGTGGACAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR TCA 90 bp CAGCATAGAGCACTATTTCAATATTATCTATATCCCAAAGACACCTaGATCCCCACAAAACTGAATCCAGTGATGCCAGCAAGCAGAGAA +
Preference number: 1 (lower is better)
Translates to: QHRALFQYYLYPKDT*IPTKLNPVMPASRE
Trigger: TTCTCTGCTTGCTGGCATCACTGGATTCAGTTTTGTGGGGATTCAGGTGTCTTTGGGATATAGATAATATTGAAATAGTGCTCTATGCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR-3UTR GCA 90 bp CGGCGTCCAAAAGGCCTCCCTGAGCTCGCCCACCTACAGCCTTCCTGTTGCCAGGAAGGCAGTGGCCCTTaGCAACAGGGGTGTCTCTTT +
Preference number: 2 (lower is better)
Translates to: RRPKGLPELAHLQPSCCQEGSGP*QQGCLF
Trigger: AAAGAGACACCCCTGTTGGCAAGGGCCACTGCCTTC...CTGGCAACAGGAAGGCTGTAGGTGGGCGAGCTCAGGGAGGCCTTTTGGACGCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR-3UTR GCA 90 bp TACCAGTATGCGGGTGCTGGGGACCCTCTGCAGGTCCAAAGCCAAGTGACTGCAAGCCTCCCTGGAGCATaGCCAGTGTCTCTGCTGTGC +
Preference number: 2 (lower is better)
Translates to: YQYAGAGDPLQVQSQVTASLPGA*PVSLLC
Trigger: GCACAGCAGAGACACTGGGCATGCTCCAGGGAGGCT...TGCAGTCACTTGGCTTTGGACCTGCAGAGGGTCCCCAGCACCCGCATACTGGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR-3UTR CCA 90 bp TCCCAGGGATCCTGGATGAGCTCAAGACACCCCGGGAAAAGACCACAGACCCAAGGGCTAGCAGCCCTATaGACCAGAGCAGGCAGGGTG +
Preference number: 2 (lower is better)
Translates to: SQGSWMSSRHPGKRPQTQGLAAL*TRAGRV
Trigger: CACCCTGCCTGCTCTGGTCCATAGGGCTGCTAGCCC...TTGGGTCTGTGGTCTTTTCCCGGGGTGTCTTGAGCTCATCCAGGATCCCTGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR-3UTR GCA 90 bp CCACACGGCGTCCAAAAGGCCTCCCTGAGCTCGCCCACCTACAGCCTTCCTGTTGCAAGCAGGACTTGGTaGTGTCCTCAGAGTTGGTCA +
Preference number: 2 (lower is better)
Translates to: PHGVQKASLSSPTYSLPVASRTW*CPQSWS
Trigger: TGACCAACTCTGAGGACAGCACCAAGTCCTGCTTGC...AACAGGAAGGCTGTAGGTGGGCGAGCTCAGGGAGGCCTTTTGGACGCCGTGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR-3UTR GCA 90 bp TACCAGTATGCGGGTGCTGGGGACCCTCTGCAGGTCCAAAGCCAAGTGACTGCAAGAAACCTGCCACTATaGCAGGGTGCCAGGGTCTGC +
Preference number: 2 (lower is better)
Translates to: YQYAGAGDPLQVQSQVTARNLPL*QGARVC
Trigger: GCAGACCCTGGCACCCTGGCATAGTGGCAGGTTTCT...TGCAGTCACTTGGCTTTGGACCTGCAGAGGGTCCCCAGCACCCGCATACTGGTA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR-3UTR GCA 90 bp CTAGTGCTTCTGCTGCCTGCAAGCCTAACTCAGTCCAGTCCCTGGCTTCCTGAGAGCCTCCCTGGAGCATaGCCAGTGTCTCTGCTGTGC +
Preference number: 2 (lower is better)
Translates to: LVLLLPASLTQSSPWLPESLPGA*PVSLLC
Trigger: GCACAGCAGAGACACTGGGCATGCTCCAGGGAGGCT...CTCAGGAAGCCAGGGACTGGACTGAGTTAGGCTTGCAGGCAGCAGAAGCACTAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR-3UTR TCA 90 bp CCACACGGCGTCCAAAAGGCCTCCCTGAGCTCGCCCACCTACAGCCTTCCTGTTGTGGGCTCTCATGTCTaGTGGGTAGATTTTCCTCTC +
Preference number: 2 (lower is better)
Translates to: PHGVQKASLSSPTYSLPVVGSHV*WVDFPL
Trigger: GAGAGGAAAATCTACCCATCAGACATGAGAGCCCAC...AACAGGAAGGCTGTAGGTGGGCGAGCTCAGGGAGGCCTTTTGGACGCCGTGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR-3UTR TCA 90 bp GTTCCCAGGTGGCTGTTCACAGTGTCTTTCACTGATGTAGAGAGCTGGTGCCGGGGTGCCAGGGTCTGCTaGGGCTTTGGATGGATCCAG +
Preference number: 2 (lower is better)
Translates to: VPRWLFTVSFTDVESWCRGARVC*GFGWIQ
Trigger: CTGGATCCATCCAAAGCCTCAGCAGACCCTGGCACC...CCGGCACCAGCTCTCTACATCAGTGAAAGACACTGTGAACAGCCACCTGGGAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR-3UTR CCA 90 bp CTGTCATCCACCTCAGGGTTCCTCGCCCTAGCAGACAGCATGGGGCTGAGCATAGGCAGAAAGCCTCTGTaGGCTCTCATGTCTGATGGG +
Preference number: 2 (lower is better)
Translates to: LSSTSGFLALADSMGLSIGRKPL*ALMSDG
Trigger: CCCATCAGACATGAGAGCCCACAGAGGCTTTCTGCC...TATGCTCAGCCCCATGCTGTCTGCTAGGGCGAGGAACCCTGAGGTGGATGACAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR-3UTR CCA 90 bp ACCCACTGCTCTCCTCAAACAGAAGAGTCCTGGACCCAGCCCAGAGCTCCCTCTCAGGCTGCTGTGGGGTaGGGCCACAGTTGTTTTTCA +
Preference number: 2 (lower is better)
Translates to: THCSPQTEESWTQPRAPSQAAVG*GHSCFS
Trigger: TGAAAAACAACTGTGGCCCCACCCCACAGCAGCCTG...AGAGGGAGCTCTGGGCTGGGTCCAGGACTCTTCTGTTTGAGGAGAGCAGTGGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR-3UTR CCA 90 bp ACCCACTGCTCTCCTCAAACAGAAGAGTCCTGGACCCAGCCCAGAGCTCCCTCTCCTTCCTGTTGCCAGTaGGTTCTGTGGCGACGAAAG +
Preference number: 2 (lower is better)
Translates to: THCSPQTEESWTQPRAPSPSCCQ*VLWRRK
Trigger: CTTTCGTCGCCACAGAACCCACTGGCAACAGGAAGG...AGAGGGAGCTCTGGGCTGGGTCCAGGACTCTTCTGTTTGAGGAGAGCAGTGGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR CAA 90 bp AGCTGCACAGAGATGAGCAAGCAGGACTTGGTGCTGTCCTCAGAGTaGGTCAGAATGCTGCCTGTCATCCACCTCAGGGTTCCTCGCCCT +
Preference number: 2 (lower is better)
Translates to: SCTEMSKQDLVLSSE*VRMLPVIHLRVPRP
Trigger: AGGGCGAGGAACCCTGAGGTGGATGACAGGCAGCATTCTGACCAACTCTGAGGACAGCACCAAGTCCTGCTTGCTCATCTCTGTGCAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR-3UTR TCA 90 bp TCAGCAGCAGTTGGGCTGCTCGGAACTCTGCAGGACAAGGCCCACTGGACATGGGACTCCCGAGTTCTCTaGGCTTCTTACTGGAGAGAT +
Preference number: 2 (lower is better)
Translates to: SAAVGLLGTLQDKAHWTWDSRVL*ASYWRD
Trigger: ATCTCTCCAGTAAGAAGCTCAGAGAACTCGGGAGTC...CCATGTCCAGTGGGCCTTGTCCTGCAGAGTTCCGAGCAGCCCAACTGCTGCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR-3UTR TCA 90 bp GTGAGCTGCCACGTGGGTACTGAGACTCAAACTTGTGTCCTCTGGGAGAGCCACATGAGGTGGCTGAGGTaGGATGTGGACAAGCCAGCT +
Preference number: 2 (lower is better)
Translates to: VSCHVGTETQTCVLWESHMRWLR*DVDKPA
Trigger: AGCTGGCTTGTCCACATCTCACCTCAGCCACCTCAT...GTGGCTCTCCCAGAGGACACAAGTTTGAGTCTCAGTACCCACGTGGCAGCTCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR-3UTR GCA 90 bp TCTCTGAGCTTCTTACTGGAGAGATCTGCTCTAGCAGCCCTCCTGGTCAGCAGTGCCACTATGCCAGGGTaGCAGGGTCTGCTGAGGCTT +
Preference number: 2 (lower is better)
Translates to: SLSFLLERSALAALLVSSATMPG*QGLLRL
Trigger: AAGCCTCAGCAGACCCTGGCACCCTGGCATAGTGGC...ACTGCTGACCAGGAGGGCTGCTAGAGCAGATCTCTCCAGTAAGAAGCTCAGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR-3UTR CCA 90 bp CTGTCATCCACCTCAGGGTTCCTCGCCCTAGCAGACAGCATGGGGCTGAGCATAAGTCTGGAAAATGGCTaGAGCTTCAGGAAGCTCCGG +
Preference number: 2 (lower is better)
Translates to: LSSTSGFLALADSMGLSISLENG*SFRKLR
Trigger: CCGGAGCTTCCTGAAGCTCCAGCCATTTTCCAGACT...TATGCTCAGCCCCATGCTGTCTGCTAGGGCGAGGAACCCTGAGGTGGATGACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR-3UTR CCA 90 bp TCAGCAGCAGTTGGGCTGCTCGGAACTCTGCAGGACAAGGCCCACTGGACATGGTGCTGTCCTCAGAGTTaGTCAGAATGCTGCCTGTCA +
Preference number: 2 (lower is better)
Translates to: SAAVGLLGTLQDKAHWTWCCPQS*SECCLS
Trigger: TGACAGGCAGCATTCTGACCAACTCTGAGGACAGCA...CCATGTCCAGTGGGCCTTGTCCTGCAGAGTTCCGAGCAGCCCAACTGCTGCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR-3UTR CCA 90 bp GTTCCCAGGTGGCTGTTCACAGTGTCTTTCACTGATGTAGAGAGCTGGTGCCGGAATGGCAGGCTGCTGTaGGGTGGGGCCACAGTTGTT +
Preference number: 2 (lower is better)
Translates to: VPRWLFTVSFTDVESWCRNGRLL*GGATVV
Trigger: AACAACTGTGGCCCCACCCCACAGCAGCCTGCCATT...CCGGCACCAGCTCTCTACATCAGTGAAAGACACTGTGAACAGCCACCTGGGAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR-3UTR GCA 90 bp TACCAGTATGCGGGTGCTGGGGACCCTCTGCAGGTCCAAAGCCAAGTGACTGCACCAGTGTCTCTGCTGTaGTCTGTAGAGGTAGACACT +
Preference number: 2 (lower is better)
Translates to: YQYAGAGDPLQVQSQVTAPVSLL*SVEVDT
Trigger: AGTGTCTACCTCTACAGAGCACAGCAGAGACACTGG...TGCAGTCACTTGGCTTTGGACCTGCAGAGGGTCCCCAGCACCCGCATACTGGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR-3UTR CCA 90 bp GTTCCCAGGTGGCTGTTCACAGTGTCTTTCACTGATGTAGAGAGCTGGTGCCGGGGCAGAAAGCCTCTGTaGGCTCTCATGTCTGATGGG +
Preference number: 2 (lower is better)
Translates to: VPRWLFTVSFTDVESWCRGRKPL*ALMSDG
Trigger: CCCATCAGACATGAGAGCCCACAGAGGCTTTCTGCC...CCGGCACCAGCTCTCTACATCAGTGAAAGACACTGTGAACAGCCACCTGGGAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR-3UTR TCA 90 bp GAGGTGGCTTCTGCCTTCTCTCTTGGCTGGGAGGGAGCTGAAGGAATGGATCTTCACAGTGTCTTTCACTaGTGTAGAGAGCTGGTGCCG +
Preference number: 2 (lower is better)
Translates to: EVASAFSLGWEGAEGMDLHSVFH*CRELVP
Trigger: CGGCACCAGCTCTCTACATCAGTGAAAGACACTGTG...AAGATCCATTCCTTCAGCTCCCTCCCAGCCAAGAGAGAAGGCAGAAGCCACCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR-3UTR GCA 90 bp GTGAGCTGCCACGTGGGTACTGAGACTCAAACTTGTGTCCTCTGGGAGAGCCACCAGAGTTGGTCAGAATaGTGCCTGTCATCCACCTCA +
Preference number: 2 (lower is better)
Translates to: VSCHVGTETQTCVLWESHQSWSE*CLSSTS
Trigger: TGAGGTGGATGACAGGCAGCATTCTGACCAACTCTG...GTGGCTCTCCCAGAGGACACAAGTTTGAGTCTCAGTACCCACGTGGCAGCTCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR-3UTR GCA 90 bp CGTTTAGGGACCAATCTCAAGATCCCTGATTCCGAGTCTGGGATTTCCCAGGGAAGAAACCTGCCACTATaGCAGGGTGCCAGGGTCTGC +
Preference number: 2 (lower is better)
Translates to: RLGTNLKIPDSESGISQGRNLPL*QGARVC
Trigger: GCAGACCCTGGCACCCTGGCATAGTGGCAGGTTTCT...TCCCTGGGAAATCCCAGACTCGGAATCAGGGATCTTGAGATTGGTCCCTAAACG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR-3UTR GCA 90 bp AATAGATGTCCGGGAGCAGCACCAACAGCATCTGCTCACAGCACCATGGCAGCAGCCAGTTTTCTTGTCTaGACTGTAGCTGGGGTCCAC +
Preference number: 2 (lower is better)
Translates to: NRCPGAAPTASAHSTMAAASFLV*TVAGVH
Trigger: GTGGACCCCAGCTACAGTGCAGACAAGAAAACTGGC...TGCTGCCATGGTGCTGTGAGCAGATGCTGTTGGTGCTGCTCCCGGACATCTATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR-3UTR CCA 90 bp TCCCAGGGATCCTGGATGAGCTCAAGACACCCCGGGAAAAGACCACAGACCCAACAGGACAAGGCCCACTaGACATGGCAGCTAATAAGT +
Preference number: 2 (lower is better)
Translates to: SQGSWMSSRHPGKRPQTQQDKAH*TWQLIS
Trigger: ACTTATTAGCTGCCATGTCCAGTGGGCCTTGTCCTG...TTGGGTCTGTGGTCTTTTCCCGGGGTGTCTTGAGCTCATCCAGGATCCCTGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR-3UTR TCA 90 bp GAGGTGGCTTCTGCCTTCTCTCTTGGCTGGGAGGGAGCTGAAGGAATGGATCTTGTGGGCTCTCATGTCTaGTGGGTAGATTTTCCTCTC +
Preference number: 2 (lower is better)
Translates to: EVASAFSLGWEGAEGMDLVGSHV*WVDFPL
Trigger: GAGAGGAAAATCTACCCATCAGACATGAGAGCCCAC...AAGATCCATTCCTTCAGCTCCCTCCCAGCCAAGAGAGAAGGCAGAAGCCACCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR-3UTR TCA 90 bp CGTTTAGGGACCAATCTCAAGATCCCTGATTCCGAGTCTGGGATTTCCCAGGGATCAGCTGCACAGAGATaGGCAAGCAGGACTTGGTGC +
Preference number: 2 (lower is better)
Translates to: RLGTNLKIPDSESGISQGSAAQR*ASRTWC
Trigger: GCACCAAGTCCTGCTTGCTCATCTCTGTGCAGCTGA...TCCCTGGGAAATCCCAGACTCGGAATCAGGGATCTTGAGATTGGTCCCTAAACG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR-3UTR TCA 90 bp GACGTAAGCATTCACAAATGTCAAACAGAAACACCAGACTGGGGACAGCGTCTAGGTCCACACCAGAGGTaGCCCCATTCCCCTGAGCCT +
Preference number: 2 (lower is better)
Translates to: DVSIHKCQTETPDWGQRLGPHQR*PHSPEP
Trigger: AGGCTCAGGGGAATGGGGTCACCTCTGGTGTGGACC...TAGACGCTGTCCCCAGTCTGGTGTTTCTGTTTGACATTTGTGAATGCTTACGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR-3UTR TCA 90 bp TCCCAGGGATCCTGGATGAGCTCAAGACACCCCGGGAAAAGACCACAGACCCAAAGTAGCCTGGAGAGTTaGGGCTTGATAGCCAAGATA +
Preference number: 2 (lower is better)
Translates to: SQGSWMSSRHPGKRPQTQSSLES*GLIAKI
Trigger: TATCTTGGCTATCAAGCCTCAACTCTCCAGGCTACT...TTGGGTCTGTGGTCTTTTCCCGGGGTGTCTTGAGCTCATCCAGGATCCCTGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR-3UTR GCA 90 bp TGCACGTGCTCTGGAGCTACAGACTTTCAGAAACAGAAGGAGGCAGCTAGTCAGGAAGGCAGTGGCCCTTaGCAACAGGGGTGTCTCTTT +
Preference number: 2 (lower is better)
Translates to: CTCSGATDFQKQKEAASQEGSGP*QQGCLF
Trigger: AAAGAGACACCCCTGTTGGCAAGGGCCACTGCCTTC...CTGACTAGCTGCCTCCTTCTGTTTCTGAAAGTCTGTAGCTCCAGAGCACGTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR-3UTR GCA 90 bp TCTCTGAGCTTCTTACTGGAGAGATCTGCTCTAGCAGCCCTCCTGGTCAGCAGTGCAAGCAGGACTTGGTaGTGTCCTCAGAGTTGGTCA +
Preference number: 2 (lower is better)
Translates to: SLSFLLERSALAALLVSSASRTW*CPQSWS
Trigger: TGACCAACTCTGAGGACAGCACCAAGTCCTGCTTGC...ACTGCTGACCAGGAGGGCTGCTAGAGCAGATCTCTCCAGTAAGAAGCTCAGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR-3UTR GCA 90 bp TGCACGTGCTCTGGAGCTACAGACTTTCAGAAACAGAAGGAGGCAGCTAGTCAGCTACAGCCTTCCTGTTaGCAGTGGGTTCTGTGGCGA +
Preference number: 2 (lower is better)
Translates to: CTCSGATDFQKQKEAASQLQPSC*QWVLWR
Trigger: TCGCCACAGAACCCACTGGCAACAGGAAGGCTGTAG...CTGACTAGCTGCCTCCTTCTGTTTCTGAAAGTCTGTAGCTCCAGAGCACGTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR-3UTR GCA 90 bp CACTTAGGTGTTTCTGGGAGCTGCCCAGTGCAAGCATTAGTCCTACAGGATCTGGAGCTGGCATTCACTTaGTGGTTGTCAGGCCCTGGT +
Preference number: 2 (lower is better)
Translates to: HLGVSGSCPVQALVLQDLELAFT*WLSGPG
Trigger: ACCAGGGCCTGACAACCAGCAAGTGAATGCCAGCTC...CAGATCCTGTAGGACTAATGCTTGCACTGGGCAGCTCCCAGAAACACCTAAGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR-3UTR CCA 90 bp CGTTTAGGGACCAATCTCAAGATCCCTGATTCCGAGTCTGGGATTTCCCAGGGACTGCTCACAGCACCATaGCAGCAACTGGAAGGCAAC +
Preference number: 2 (lower is better)
Translates to: RLGTNLKIPDSESGISQGLLTAP*QQLEGN
Trigger: GTTGCCTTCCAGTTGCTGCCATGGTGCTGTGAGCAG...TCCCTGGGAAATCCCAGACTCGGAATCAGGGATCTTGAGATTGGTCCCTAAACG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR CAA 90 bp TCTAGGATCACTGAAGTCAGCTGCACAGAGATGAGCAAGCAGGACTaGGTGCTGTCCTCAGAGTTGGTCAGAATGCTGCCTGTCATCCAC +
Preference number: 2 (lower is better)
Translates to: SRITEVSCTEMSKQD*VLSSELVRMLPVIH
Trigger: GTGGATGACAGGCAGCATTCTGACCAACTCTGAGGACAGCACCAAGTCCTGCTTGCTCATCTCTGTGCAGCTGACTTCAGTGATCCTAGA
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR-3UTR GCA 90 bp TGCCTATTGGTATGTCTGTGTACTACTTACATGCCTGGGCCTGTGGAGAGAAGGAAGCACCGTGGTTGGTaGAGACAGAGGCAGCAAAGG +
Preference number: 2 (lower is better)
Translates to: CLLVCLCTTYMPGPVERRKHRGW*RQRQQR
Trigger: CCTTTGCTGCCTCTGTCTGCACCAACCACGGTGCTT...CCTTCTCTCCACAGGCCCAGGCATGTAAGTAGTACACAGACATACCAATAGGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR-3UTR GCA 90 bp AATAGATGTCCGGGAGCAGCACCAACAGCATCTGCTCACAGCACCATGGCAGCAATCACTGAAGTCAGCTaGACAGAGATGAGCAAGCAG +
Preference number: 2 (lower is better)
Translates to: NRCPGAAPTASAHSTMAAITEVS*TEMSKQ
Trigger: CTGCTTGCTCATCTCTGTGCAGCTGACTTCAGTGAT...TGCTGCCATGGTGCTGTGAGCAGATGCTGTTGGTGCTGCTCCCGGACATCTATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR-3UTR GCA 90 bp CTAGTGCTTCTGCTGCCTGCAAGCCTAACTCAGTCCAGTCCCTGGCTTCCTGAGATGTCTAGTCCAATGTaGACAACACTGACACAGCAC +
Preference number: 2 (lower is better)
Translates to: LVLLLPASLTQSSPWLPEMSSPM*TTLTQH
Trigger: GTGCTGTGTCAGTGTTGTGCACATTGGACTAGACAT...CTCAGGAAGCCAGGGACTGGACTGAGTTAGGCTTGCAGGCAGCAGAAGCACTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR-3UTR CCA 90 bp CGTTTAGGGACCAATCTCAAGATCCCTGATTCCGAGTCTGGGATTTCCCAGGGAAGTCTGGAAAATGGCTaGAGCTTCAGGAAGCTCCGG +
Preference number: 2 (lower is better)
Translates to: RLGTNLKIPDSESGISQGSLENG*SFRKLR
Trigger: CCGGAGCTTCCTGAAGCTCCAGCCATTTTCCAGACT...TCCCTGGGAAATCCCAGACTCGGAATCAGGGATCTTGAGATTGGTCCCTAAACG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR-3UTR TCA 90 bp AAGCCATGGCTGCAGCTGTTTAAGAGGAATGCACCACACACTGCAGTGTACAGACACAGTGTCTTTCACTaGTGTAGAGAGCTGGTGCCG +
Preference number: 2 (lower is better)
Translates to: KPWLQLFKRNAPHTAVYRHSVFH*CRELVP
Trigger: CGGCACCAGCTCTCTACATCAGTGAAAGACACTGTG...TCTGTACACTGCAGTGTGTGGTGCATTCCTCTTAAACAGCTGCAGCCATGGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR-3UTR GCA 90 bp CACTTAGGTGTTTCTGGGAGCTGCCCAGTGCAAGCATTAGTCCTACAGGATCTGCAGAGTTGGTCAGAATaGTGCCTGTCATCCACCTCA +
Preference number: 2 (lower is better)
Translates to: HLGVSGSCPVQALVLQDLQSWSE*CLSSTS
Trigger: TGAGGTGGATGACAGGCAGCATTCTGACCAACTCTG...CAGATCCTGTAGGACTAATGCTTGCACTGGGCAGCTCCCAGAAACACCTAAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR-3UTR CCA 90 bp GACGTAAGCATTCACAAATGTCAAACAGAAACACCAGACTGGGGACAGCGTCTAAATGGCAGGCTGCTGTaGGGTGGGGCCACAGTTGTT +
Preference number: 2 (lower is better)
Translates to: DVSIHKCQTETPDWGQRLNGRLL*GGATVV
Trigger: AACAACTGTGGCCCCACCCCACAGCAGCCTGCCATT...TAGACGCTGTCCCCAGTCTGGTGTTTCTGTTTGACATTTGTGAATGCTTACGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR-3UTR CCA 90 bp AAGCCATGGCTGCAGCTGTTTAAGAGGAATGCACCACACACTGCAGTGTACAGAACACTTAGGTGTTTCTaGGAGCTGCCCAGTGCAAGC +
Preference number: 2 (lower is better)
Translates to: KPWLQLFKRNAPHTAVYRTLRCF*ELPSAS
Trigger: GCTTGCACTGGGCAGCTCCCAGAAACACCTAAGTGT...TCTGTACACTGCAGTGTGTGGTGCATTCCTCTTAAACAGCTGCAGCCATGGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR-3UTR TCA 90 bp CACTTAGGTGTTTCTGGGAGCTGCCCAGTGCAAGCATTAGTCCTACAGGATCTGCTTTTTAGGGCATCCTaGTGTCCCAACTCATTGGCA +
Preference number: 2 (lower is better)
Translates to: HLGVSGSCPVQALVLQDLLFRAS*CPNSLA
Trigger: TGCCAATGAGTTGGGACATCAGGATGCCCTAAAAAG...CAGATCCTGTAGGACTAATGCTTGCACTGGGCAGCTCCCAGAAACACCTAAGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR-3UTR CCA 90 bp TTCTCTCTTGGCTGGGAGGGAGCTGAAGGAATGGATCTTAGTACAGCTCCGAGCTACTTGTCTACGATGTaGCTGGGACAAGAGAAAGCA +
Preference number: 2 (lower is better)
Translates to: FSLGWEGAEGMDLSTAPSYLSTM*LGQEKA
Trigger: TGCTTTCTCTTGTCCCAGCCACATCGTAGACAAGTA...GCTCGGAGCTGTACTAAGATCCATTCCTTCAGCTCCCTCCCAGCCAAGAGAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR-3UTR GCA 90 bp AGAATCCCAATACTTTGCTGGAGTATTCTTAGTTGTCCCAGGACACATCTTAAGGCCACTATGCCAGGGTaGCAGGGTCTGCTGAGGCTT +
Preference number: 2 (lower is better)
Translates to: RIPILCWSILSCPRTHLKATMPG*QGLLRL
Trigger: AAGCCTCAGCAGACCCTGGCACCCTGGCATAGTGGC...CTTAAGATGTGTCCTGGGACAACTAAGAATACTCCAGCAAAGTATTGGGATTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR-3UTR GCA 90 bp CACTTAGGTGTTTCTGGGAGCTGCCCAGTGCAAGCATTAGTCCTACAGGATCTGAGTTGTTTTTCAAGGTaGAGTGGGCAGAAGCTACTG +
Preference number: 2 (lower is better)
Translates to: HLGVSGSCPVQALVLQDLSCFSR*SGQKLL
Trigger: CAGTAGCTTCTGCCCACTGCACCTTGAAAAACAACT...CAGATCCTGTAGGACTAATGCTTGCACTGGGCAGCTCCCAGAAACACCTAAGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR-3UTR GCA 90 bp ACACTTAGGTGTTTCTGGGAGCTGCCCAGTGCAAGCATTAGTCCTACAGGATCTCTTCTAAGACATCTCTaGCTGCAGCTGAGCATGCTT +
Preference number: 2 (lower is better)
Translates to: TLRCFWELPSASISPTGSLLRHL*LQLSML
Trigger: AAGCATGCTCAGCTGCAGGCAGAGATGTCTTAGAAG...AGATCCTGTAGGACTAATGCTTGCACTGGGCAGCTCCCAGAAACACCTAAGTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR-3UTR CCA 90 bp TGCCTATTGGTATGTCTGTGTACTACTTACATGCCTGGGCCTGTGGAGAGAAGGGATGTCCCAACTCATTaGCACAGGAAGTCAGTGTCT +
Preference number: 2 (lower is better)
Translates to: CLLVCLCTTYMPGPVERRDVPTH*HRKSVS
Trigger: AGACACTGACTTCCTGTGCCAATGAGTTGGGACATC...CCTTCTCTCCACAGGCCCAGGCATGTAAGTAGTACACAGACATACCAATAGGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR CAA 90 bp GGATACACTGGTGCTTCTCAATGGGAGGGATCTACTTTTTGCCTATaGGTATGTCTGTGTACTACTTACATGCCTGGGCCTGTGGAGAGA +
Preference number: 2 (lower is better)
Translates to: GYTGASQWEGSTFCL*VCLCTTYMPGPVER
Trigger: TCTCTCCACAGGCCCAGGCATGTAAGTAGTACACAGACATACCAATAGGCAAAAAGTAGATCCCTCCCATTGAGAAGCACCAGTGTATCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR CAA 90 bp GTGTCCAGGATACACTGGTGCTTCTCAATGGGAGGGATCTACTTTTaGCCTATTGGTATGTCTGTGTACTACTTACATGCCTGGGCCTGT +
Preference number: 2 (lower is better)
Translates to: VSRIHWCFSMGGIYF*PIGMSVYYLHAWAC
Trigger: ACAGGCCCAGGCATGTAAGTAGTACACAGACATACCAATAGGCAAAAAGTAGATCCCTCCCATTGAGAAGCACCAGTGTATCCTGGACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR-3UTR TCA 90 bp AATAGATGTCCGGGAGCAGCACCAACAGCATCTGCTCACAGCACCATGGCAGCAACATCTAGAAGGTTCTaGACATTTCATTTGTTCCCA +
Preference number: 2 (lower is better)
Translates to: NRCPGAAPTASAHSTMAATSRRF*TFHLFP
Trigger: TGGGAACAAATGAAATGTTCAGAACCTTCTAGATGT...TGCTGCCATGGTGCTGTGAGCAGATGCTGTTGGTGCTGCTCCCGGACATCTATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR-3UTR TCA 90 bp GGGAACCCAACAGAGCACAGGAAGCGAGTTGGAAACACATTTACTTTTATGAGATCCACTTGTCTTCCTTaGGAAGGAACCAGGAGAAAG +
Preference number: 2 (lower is better)
Translates to: GNPTEHRKRVGNTFTFMRSTCLP*EGTRRK
Trigger: CTTTCTCCTGGTTCCTTCTCAAGGAAGACAAGTGGA...TCTCATAAAAGTAAATGTGTTTCCAACTCGCTTCCTGTGCTCTGTTGGGTTCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR CAA 90 bp TTGATAAAATTAATGGTCCTTAGCACTATCTATACTGACTTCATATaGAAAGTACCATTCAGGTCATCAAACTCAGCACACAGACATCAC +
Preference number: 2 (lower is better)
Translates to: LIKLMVLSTIYTDFI*KVPFRSSNSAHRHH
Trigger: GTGATGTCTGTGTGCTGAGTTTGATGACCTGAATGGTACTTTCAATATGAAGTCAGTATAGATAGTGCTAAGGACCATTAATTTTATCAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR CAA 90 bp GGTGGGGCCCTGTGTCTTAAACTATATGGCCAATTATGTAACAATTaGATAAAATTAATGGTCCTTAGCACTATCTATACTGACTTCATA +
Preference number: 2 (lower is better)
Translates to: GGALCLKLYGQLCNN*IKLMVLSTIYTDFI
Trigger: TATGAAGTCAGTATAGATAGTGCTAAGGACCATTAATTTTATCAAATTGTTACATAATTGGCCATATAGTTTAAGACACAGGGCCCCACC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR CAA 90 bp AAGGCACAAAGTTTATATAATAGTCTTACAAGTCTTGAGATACGTTaGTATTTTGACAAAAGTCTGAGAGAGCTAAGGAAAGCCGAGGAA +
Preference number: 2 (lower is better)
Translates to: KAQSLYNSLTSLEIR*YFDKSLRELRKAEE
Trigger: TTCCTCGGCTTTCCTTAGCTCTCTCAGACTTTTGTCAAAATACAAACGTATCTCAAGACTTGTAAGACTATTATATAAACTTTGTGCCTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR GCA 72 bp GGCCTCCCTGAGCTCGCCCACCTACAGCCTTCCTGTTaGCAGTGGGTTCTGTGGCGACGAAAGCCTCCCTGG +
Preference number: 3 (lower is better)
Translates to: GLPELAHLQPSC*QWVLWRRKPPW
Trigger: CCAGGGAGGCTTTCGTCGCCACAGAACCCACTGGCAACAGGAAGGCTGTAGGTGGGCGAGCTCAGGGAGGCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR TCA 72 bp CGTGGTCTTGCCCTGCTGACCAGCAGGAAGTGGAATTaGCCGGAATGGCAGGCTGCTGTGGGGTGGGGCCAC +
Preference number: 3 (lower is better)
Translates to: RGLALLTSRKWN*PEWQAAVGWGH
Trigger: GTGGCCCCACCCCACAGCAGCCTGCCATTCCGGTCAATTCCACTTCCTGCTGGTCAGCAGGGCAAGACCACG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR TCA 72 bp GCCTGCAAGCCTAACTCAGTCCAGTCCCTGGCTTCCTaGGTAACGCGGCACCAGTGCTCCTGTTGCCGGGCT +
Preference number: 3 (lower is better)
Translates to: ACKPNSVQSLAS*VTRHQCSCCRA
Trigger: AGCCCGGCAACAGGAGCACTGGTGCCGCGTTACTCAGGAAGCCAGGGACTGGACTGAGTTAGGCTTGCAGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR CCA 72 bp GCCCACCTACAGCCTTCCTGTTGCCAGTGGGTTCTGTaGCGACGAAAGCCTCCCTGGAGCATGCCCAGTGTC +
Preference number: 3 (lower is better)
Translates to: AHLQPSCCQWVL*RRKPPWSMPSV
Trigger: GACACTGGGCATGCTCCAGGGAGGCTTTCGTCGCCACAGAACCCACTGGCAACAGGAAGGCTGTAGGTGGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR CCA 72 bp CCTGAGCTCGCCCACCTACAGCCTTCCTGTTGCCAGTaGGTTCTGTGGCGACGAAAGCCTCCCTGGAGCATG +
Preference number: 3 (lower is better)
Translates to: PELAHLQPSCCQ*VLWRRKPPWSM
Trigger: CATGCTCCAGGGAGGCTTTCGTCGCCACAGAACCCACTGGCAACAGGAAGGCTGTAGGTGGGCGAGCTCAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR TCA 72 bp ACCTGTAGTCACCACACGGCGTCCAAAAGGCCTCCCTaGGCTCGCCCACCTACAGCCTTCCTGTTGCCAGTG +
Preference number: 3 (lower is better)
Translates to: TCSHHTASKRPP*ARPPTAFLLPV
Trigger: CACTGGCAACAGGAAGGCTGTAGGTGGGCGAGCTCAGGGAGGCCTTTTGGACGCCGTGTGGTGACTACAGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR TCA 72 bp CATGAGGTGGCTGAGGTGAGATGTGGACAAGCCAGCTaGGTGCTACCAGTATGCGGGTGCTGGGGACCCTCT +
Preference number: 3 (lower is better)
Translates to: HEVAEVRCGQAS*VLPVCGCWGPS
Trigger: AGAGGGTCCCCAGCACCCGCATACTGGTAGCACTCAGCTGGCTTGTCCACATCTCACCTCAGCCACCTCATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR-3UTR CAA 90 bp GAGCTCGCCCACCTACAGCCTTCCTGTTGCCAGTGGGTTCTGTGGCGACGAAAGATGAGCAAGCAGGACTaGGTGCTGTCCTCAGAGTTG +
Preference number: 3 (lower is better)
Translates to: ELAHLQPSCCQWVLWRRKMSKQD*VLSSEL
Trigger: CAACTCTGAGGACAGCACCAAGTCCTGCTTGCTCAT...CTTTCGTCGCCACAGAACCCACTGGCAACAGGAAGGCTGTAGGTGGGCGAGCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR GCA 72 bp AGTGGGTTCTGTGGCGACGAAAGCCTCCCTGGAGCATaGCCAGTGTCTCTGCTGTGCTCTGTAGAGGTAGAC +
Preference number: 3 (lower is better)
Translates to: SGFCGDESLPGA*PVSLLCSVEVD
Trigger: GTCTACCTCTACAGAGCACAGCAGAGACACTGGGCATGCTCCAGGGAGGCTTTCGTCGCCACAGAACCCACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR CCA 72 bp TGTTGCCAGTGGGTTCTGTGGCGACGAAAGCCTCCCTaGAGCATGCCCAGTGTCTCTGCTGTGCTCTGTAGA +
Preference number: 3 (lower is better)
Translates to: CCQWVLWRRKPP*SMPSVSAVLCR
Trigger: TCTACAGAGCACAGCAGAGACACTGGGCATGCTCCAGGGAGGCTTTCGTCGCCACAGAACCCACTGGCAACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR TCA 72 bp CTGATTCCGAGTCTGGGATTTCCCAGGGATCCTGGATaGGCTCAAGACACCCCGGGAAAAGACCACAGACCC +
Preference number: 3 (lower is better)
Translates to: LIPSLGFPRDPG*AQDTPGKDHRP
Trigger: GGGTCTGTGGTCTTTTCCCGGGGTGTCTTGAGCTCATCCAGGATCCCTGGGAAATCCCAGACTCGGAATCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR GCA 72 bp AGGACTTGGTGCTGTCCTCAGAGTTGGTCAGAATGCTaGCTGTCATCCACCTCAGGGTTCCTCGCCCTAGCA +
Preference number: 3 (lower is better)
Translates to: RTWCCPQSWSEC*LSSTSGFLALA
Trigger: TGCTAGGGCGAGGAACCCTGAGGTGGATGACAGGCAGCATTCTGACCAACTCTGAGGACAGCACCAAGTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR GCA 72 bp AGCAGGACTTGGTGCTGTCCTCAGAGTTGGTCAGAATaGTGCCTGTCATCCACCTCAGGGTTCCTCGCCCTA +
Preference number: 3 (lower is better)
Translates to: SRTWCCPQSWSE*CLSSTSGFLAL
Trigger: TAGGGCGAGGAACCCTGAGGTGGATGACAGGCAGCATTCTGACCAACTCTGAGGACAGCACCAAGTCCTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR GCA 72 bp ATCGTGGGGCAGACAGTAGACAGAGTCACGTGGTCTTaGCCTGCTGACCAGCAGGAAGTGGAATTGACCGGA +
Preference number: 3 (lower is better)
Translates to: IVGQTVDRVTWS*PADQQEVELTG
Trigger: TCCGGTCAATTCCACTTCCTGCTGGTCAGCAGGGCAAGACCACGTGACTCTGTCTACTGTCTGCCCCACGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR GCA 72 bp GAAAGCCTCCCTGGAGCATGCCCAGTGTCTCTGCTGTaGTCTGTAGAGGTAGACACTGACTCCCGAGTTCTC +
Preference number: 3 (lower is better)
Translates to: ESLPGACPVSLL*SVEVDTDSRVL
Trigger: GAGAACTCGGGAGTCAGTGTCTACCTCTACAGAGCACAGCAGAGACACTGGGCATGCTCCAGGGAGGCTTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR GCA 72 bp CTCTCTGTTCTAAGTGAGGCTCAGCAGCAGTTGGGCTaGTCGGAACTCTGCAGGACAAGGCCCACTGGACAT +
Preference number: 3 (lower is better)
Translates to: LSVLSEAQQQLG*SELCRTRPTGH
Trigger: ATGTCCAGTGGGCCTTGTCCTGCAGAGTTCCGAGCAGCCCAACTGCTGCTGAGCCTCACTTAGAACAGAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR CCA 72 bp GCAGGAAGTGGAATTGACCGGAATGGCAGGCTGCTGTaGGGTGGGGCCACAGTTGTTTTTCAAGGTGCAGTG +
Preference number: 3 (lower is better)
Translates to: AGSGIDRNGRLL*GGATVVFQGAV
Trigger: CACTGCACCTTGAAAAACAACTGTGGCCCCACCCCACAGCAGCCTGCCATTCCGGTCAATTCCACTTCCTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR-3UTR CAA 90 bp AGGAAAGAGCGGGGTTGCTCTAGTGCTTCTGCTGCCTGCAAGCCTAACTCAGTCACAAAAGCACCGTGGTaGGTGCAGACAGAGGCAGCA +
Preference number: 3 (lower is better)
Translates to: RKERGCSSASAACKPNSVTKAPW*VQTEAA
Trigger: TGCTGCCTCTGTCTGCACCAACCACGGTGCTTTTGT...GACTGAGTTAGGCTTGCAGGCAGCAGAAGCACTAGAGCAACCCCGCTCTTTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR TCA 72 bp AGAAACCTGCCACTATGCCAGGGTGCCAGGGTCTGCTaGGGCTTTGGATGGATCCAGGCTACTTGTCTACGA +
Preference number: 3 (lower is better)
Translates to: RNLPLCQGARVC*GFGWIQATCLR
Trigger: TCGTAGACAAGTAGCCTGGATCCATCCAAAGCCTCAGCAGACCCTGGCACCCTGGCATAGTGGCAGGTTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR CCA 72 bp AGCATCATCGTGGGGCAGACAGTAGACAGAGTCACGTaGTCTTGCCCTGCTGACCAGCAGGAAGTGGAATTG +
Preference number: 3 (lower is better)
Translates to: SIIVGQTVDRVT*SCPADQQEVEL
Trigger: CAATTCCACTTCCTGCTGGTCAGCAGGGCAAGACCACGTGACTCTGTCTACTGTCTGCCCCACGATGATGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR CCA 72 bp CTGCTCGGAACTCTGCAGGACAAGGCCCACTGGACATaGCAGCTAATAAGTGGACTGCCTGGGACTTCTAAG +
Preference number: 3 (lower is better)
Translates to: LLGTLQDKAHWT*QLISGLPGTSK
Trigger: CTTAGAAGTCCCAGGCAGTCCACTTATTAGCTGCCATGTCCAGTGGGCCTTGTCCTGCAGAGTTCCGAGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR CCA 72 bp ATCCCTGATTCCGAGTCTGGGATTTCCCAGGGATCCTaGATGAGCTCAAGACACCCCGGGAAAAGACCACAG +
Preference number: 3 (lower is better)
Translates to: IPDSESGISQGS*MSSRHPGKRPQ
Trigger: CTGTGGTCTTTTCCCGGGGTGTCTTGAGCTCATCCAGGATCCCTGGGAAATCCCAGACTCGGAATCAGGGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR-3UTR CAA 90 bp TCAGCAGCAGTTGGGCTGCTCGGAACTCTGCAGGACAAGGCCCACTGGACATGGACCATCATCAGGTGTTaGACAAGGATCCATAGCTGT +
Preference number: 3 (lower is better)
Translates to: SAAVGLLGTLQDKAHWTWTIIRC*TRIHSC
Trigger: ACAGCTATGGATCCTTGTCAAACACCTGATGATGGT...CCATGTCCAGTGGGCCTTGTCCTGCAGAGTTCCGAGCAGCCCAACTGCTGCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR TCA 72 bp GTGTCCTCTGGGAGAGCCACCTCTCCAGATGCTCTTTaGCAATGCTGTGGACGGCATCTGGAACAAAGGATC +
Preference number: 3 (lower is better)
Translates to: VSSGRATSPDAL*QCCGRHLEQRI
Trigger: GATCCTTTGTTCCAGATGCCGTCCACAGCATTGTCAAAGAGCATCTGGAGAGGTGGCTCTCCCAGAGGACAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR GCA 72 bp TCTGCAGGTCCAAAGCCAAGTGACTGCAGGCCCAGATaGAGGGAAACAGACACACTTAGGTGTTTCTGGGAG +
Preference number: 3 (lower is better)
Translates to: SAGPKPSDCRPR*RETDTLRCFWE
Trigger: CTCCCAGAAACACCTAAGTGTGTCTGTTTCCCTGCATCTGGGCCTGCAGTCACTTGGCTTTGGACCTGCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR CCA 72 bp TGTTGGGCATTTACCAGATTTGTGGTGATCACAGTCTaGGGTCCCCCTAGGCCTCCAAGTTCACCTGGGACT +
Preference number: 3 (lower is better)
Translates to: CWAFTRFVVITV*GPPRPPSSPGT
Trigger: AGTCCCAGGTGAACTTGGAGGCCTAGGGGGACCCCAGACTGTGATCACCACAAATCTGGTAAATGCCCAACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR-3UTR CAA 90 bp CGTTTAGGGACCAATCTCAAGATCCCTGATTCCGAGTCTGGGATTTCCCAGGGAGTGCTGTCCTCAGAGTaGGTCAGAATGCTGCCTGTC +
Preference number: 3 (lower is better)
Translates to: RLGTNLKIPDSESGISQGVLSSE*VRMLPV
Trigger: GACAGGCAGCATTCTGACCAACTCTGAGGACAGCAC...TCCCTGGGAAATCCCAGACTCGGAATCAGGGATCTTGAGATTGGTCCCTAAACG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR TCA 72 bp ATTTGTTCCCAGGTGGCTGTTCACAGTGTCTTTCACTaGTGTAGAGAGCTGGTGCCGGGAACTCTTCGGCAG +
Preference number: 3 (lower is better)
Translates to: ICSQVAVHSVFH*CRELVPGTLRQ
Trigger: CTGCCGAAGAGTTCCCGGCACCAGCTCTCTACATCAGTGAAAGACACTGTGAACAGCCACCTGGGAACAAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR TCA 72 bp CACCCCTTGTTGAGAACAGCTGCCCTAAATGAAGAATaGATGGGCACTTCTCAGGTTTCCCTCACGGTCCCC +
Preference number: 3 (lower is better)
Translates to: HPLLRTAALNEE*MGTSQVSLTVP
Trigger: GGGGACCGTGAGGGAAACCTGAGAAGTGCCCATTCATTCTTCATTTAGGGCAGCTGTTCTCAACAAGGGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR TCA 72 bp GATGGTCCTGGCTGTACACTTCTGAGTGGGAGTGACTaGGTCAGGGTTGTTGGGAGCTTATATTCCAGGGAC +
Preference number: 3 (lower is better)
Translates to: DGPGCTLLSGSD*VRVVGSLYSRD
Trigger: GTCCCTGGAATATAAGCTCCCAACAACCCTGACTCAGTCACTCCCACTCAGAAGTGTACAGCCAGGACCATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR GCA 72 bp AGTCTTCAAGAGAAGAGACAAAAGCACCGTGGTTGGTaGAGACAGAGGCAGCAAAGGAAGGCAGTGGCCCTT +
Preference number: 3 (lower is better)
Translates to: SLQEKRQKHRGW*RQRQQRKAVAL
Trigger: AAGGGCCACTGCCTTCCTTTGCTGCCTCTGTCTGCACCAACCACGGTGCTTTTGTCTCTTCTCTTGAAGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR GCA 72 bp GCAGTGTACAGATGGGTATTAGGACACACGGGTGTCTaGACCAGCCAGAAACAAGAAAGAGGAGGTTCCACC +
Preference number: 3 (lower is better)
Translates to: AVYRWVLGHTGV*TSQKQERGGST
Trigger: GGTGGAACCTCCTCTTTCTTGTTTCTGGCTGGTGCAGACACCCGTGTGTCCTAATACCCATCTGTACACTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR CCA 72 bp AGAAGTCTTCAAGAGAAGAGACAAAAGCACCGTGGTTaGTGCAGACAGAGGCAGCAAAGGAAGGCAGTGGCC +
Preference number: 3 (lower is better)
Translates to: RSLQEKRQKHRG*CRQRQQRKAVA
Trigger: GGCCACTGCCTTCCTTTGCTGCCTCTGTCTGCACCAACCACGGTGCTTTTGTCTCTTCTCTTGAAGACTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR CCA 72 bp ATCCAAGGTCAGGAGGAAAGGAGTCTGCACGTGCTCTaGAGCTACAGACTTTCAGAAACAGAAGGAGGCAGC +
Preference number: 3 (lower is better)
Translates to: IQGQEERSLHVL*SYRLSETEGGS
Trigger: GCTGCCTCCTTCTGTTTCTGAAAGTCTGTAGCTCCAGAGCACGTGCAGACTCCTTTCCTCCTGACCTTGGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR CCA 72 bp GAGAGCCACCTCTCCAGATGCTCTTTGACAATGCTGTaGACGGCATCTGGAACAAAGGATCTCAAGGGTGCT +
Preference number: 3 (lower is better)
Translates to: ESHLSRCSLTML*TASGTKDLKGA
Trigger: AGCACCCTTGAGATCCTTTGTTCCAGATGCCGTCCACAGCATTGTCAAAGAGCATCTGGAGAGGTGGCTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR CCA 72 bp TGGTATGTCTGTGTACTACTTACATGCCTGGGCCTGTaGAGAGAAGGAGGAGGAGTCAGAGCTCCTGGAACT +
Preference number: 3 (lower is better)
Translates to: WYVCVLLTCLGL*REGGGVRAPGT
Trigger: AGTTCCAGGAGCTCTGACTCCTCCTCCTTCTCTCCACAGGCCCAGGCATGTAAGTAGTACACAGACATACCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR CCA 72 bp GGACAGAACAGCCTAACTACAATCACTCTCCAGACGTaGCTGTCATTCCGAGTGTCCAGGATACACTGGTGC +
Preference number: 3 (lower is better)
Translates to: GQNSLTTITLQT*LSFRVSRIHWC
Trigger: GCACCAGTGTATCCTGGACACTCGGAATGACAGCCACGTCTGGAGAGTGATTGTAGTTAGGCTGTTCTGTCC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR CCA 72 bp GTTAAAAGAAATAGTGTGTGCAAAGGTCTCAGGGTGTaGGAAGGGCTAGCAGCCCTATGGACCAGAGCAGGC +
Preference number: 3 (lower is better)
Translates to: VKRNSVCKGLRV*EGLAALWTRAG
Trigger: GCCTGCTCTGGTCCATAGGGCTGCTAGCCCTTCCCACACCCTGAGACCTTTGCACACACTATTTCTTTTAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR-3UTR CAA 90 bp ACAGACACACTTAGGTGTTTCTGGGAGCTGCCCAGTGCAAGCATTAGTCCTACAACAAAAGCACCGTGGTaGGTGCAGACAGAGGCAGCA +
Preference number: 3 (lower is better)
Translates to: TDTLRCFWELPSASISPTTKAPW*VQTEAA
Trigger: TGCTGCCTCTGTCTGCACCAACCACGGTGCTTTTGT...TGTAGGACTAATGCTTGCACTGGGCAGCTCCCAGAAACACCTAAGTGTGTCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR-3UTR CAA 90 bp AAGCCATGGCTGCAGCTGTTTAAGAGGAATGCACCACACACTGCAGTGTACAGAATGAGCAAGCAGGACTaGGTGCTGTCCTCAGAGTTG +
Preference number: 3 (lower is better)
Translates to: KPWLQLFKRNAPHTAVYRMSKQD*VLSSEL
Trigger: CAACTCTGAGGACAGCACCAAGTCCTGCTTGCTCAT...TCTGTACACTGCAGTGTGTGGTGCATTCCTCTTAAACAGCTGCAGCCATGGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR TCA 72 bp GAAACTCTAGGATCACTGAAGTCAGCTGCACAGAGATaGGCAAGCAGGACTTGGTGCTGTCCTCAGAGTTGG +
Preference number: 3 (lower is better)
Translates to: ETLGSLKSAAQR*ASRTWCCPQSW
Trigger: CCAACTCTGAGGACAGCACCAAGTCCTGCTTGCTCATCTCTGTGCAGCTGACTTCAGTGATCCTAGAGTTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR TCA 72 bp GACTTGTCTCCGTTTAGGGACCAATCTCAAGATCCCTaGTTCCGAGTCTGGGATTTCCCAGGGATCCTGGAT +
Preference number: 3 (lower is better)
Translates to: DLSPFRDQSQDP*FRVWDFPGILD
Trigger: ATCCAGGATCCCTGGGAAATCCCAGACTCGGAATCAGGGATCTTGAGATTGGTCCCTAAACGGAGACAAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR TCA 72 bp TGTTTCCTGAGTGTTGGGCATTTACCAGATTTGTGGTaGTCACAGTCTGGGGTCCCCCTAGGCCTCCAAGTT +
Preference number: 3 (lower is better)
Translates to: CFLSVGHLPDLW*SQSGVPLGLQV
Trigger: AACTTGGAGGCCTAGGGGGACCCCAGACTGTGATCACCACAAATCTGGTAAATGCCCAACACTCAGGAAACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR GCA 72 bp GACAGATCCAAGGTCAGGAGGAAAGGAGTCTGCACGTaGTCTGGAGCTACAGACTTTCAGAAACAGAAGGAG +
Preference number: 3 (lower is better)
Translates to: DRSKVRRKGVCT*SGATDFQKQKE
Trigger: CTCCTTCTGTTTCTGAAAGTCTGTAGCTCCAGAGCACGTGCAGACTCCTTTCCTCCTGACCTTGGATCTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR GCA 72 bp ACTGGGGACAGCGTCTACAATACAACAAGCCATGGCTaGAGCTGTTTAAGAGGAATGCACCACACACTGCAG +
Preference number: 3 (lower is better)
Translates to: TGDSVYNTTSHG*SCLRGMHHTLQ
Trigger: CTGCAGTGTGTGGTGCATTCCTCTTAAACAGCTGCAGCCATGGCTTGTTGTATTGTAGACGCTGTCCCCAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR CCA 72 bp TTTGGATGGATCCAGGCTACTTGTCTACGATGTGGCTaGGACAAGAGAAAGCAGTGTAACCCAGCTCTAGGC +
Preference number: 3 (lower is better)
Translates to: FGWIQATCLRCG*DKRKQCNPALG
Trigger: GCCTAGAGCTGGGTTACACTGCTTTCTCTTGTCCCAGCCACATCGTAGACAAGTAGCCTGGATCCATCCAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR CCA 72 bp TTTAAGAGGAATGCACCACACACTGCAGTGTACAGATaGGTATTAGGACACACGGGTGTCTGCACCAGCCAG +
Preference number: 3 (lower is better)
Translates to: FKRNAPHTAVYR*VLGHTGVCTSQ
Trigger: CTGGCTGGTGCAGACACCCGTGTGTCCTAATACCCATCTGTACACTGCAGTGTGTGGTGCATTCCTCTTAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR-3UTR CAA 90 bp CGTTTAGGGACCAATCTCAAGATCCCTGATTCCGAGTCTGGGATTTCCCAGGGACAGGAAGTCAGTGTCTaGATGACAGATCCAAGGTCA +
Preference number: 3 (lower is better)
Translates to: RLGTNLKIPDSESGISQGQEVSV*MTDPRS
Trigger: TGACCTTGGATCTGTCATCAAGACACTGACTTCCTG...TCCCTGGGAAATCCCAGACTCGGAATCAGGGATCTTGAGATTGGTCCCTAAACG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR TCA 72 bp GGGCTCTCATGTCTGATGGGTAGATTTTCCTCTCAATaGCAGATGGGTGGCTGGATGAGCATACTGCGTAAG +
Preference number: 3 (lower is better)
Translates to: GLSCLMGRFSSQ*QMGGWMSILRK
Trigger: CTTACGCAGTATGCTCATCCAGCCACCCATCTGTCATTGAGAGGAAAATCTACCCATCAGACATGAGAGCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR TCA 72 bp GGATCTGAGTCAGGAGGTCAATCCACTTGTCTTCCTTaGGAAGGAACCAGGAGAAAGCAAACACCCAACTCC +
Preference number: 3 (lower is better)
Translates to: GSESGGQSTCLP*EGTRRKQTPNS
Trigger: GGAGTTGGGTGTTTGCTTTCTCCTGGTTCCTTCTCAAGGAAGACAAGTGGATTGACCTCCTGACTCAGATCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR TCA 72 bp GCAGGATCACCCCTTGTTGAGAACAGCTGCCCTAAATaGAGAATGAATGGGCACTTCTCAGGTTTCCCTCAC +
Preference number: 3 (lower is better)
Translates to: AGSPLVENSCPK*RMNGHFSGFPH
Trigger: GTGAGGGAAACCTGAGAAGTGCCCATTCATTCTTCATTTAGGGCAGCTGTTCTCAACAAGGGGTGATCCTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR TCA 72 bp TGTGAGAAACCCATGAGACTTAAACAGCAGGCTCATTaGGCCAATGAGAGGGGCAGAGACAGAGTAAGCCAG +
Preference number: 3 (lower is better)
Translates to: CEKPMRLKQQAH*ANERGRDRVSQ
Trigger: CTGGCTTACTCTGTCTCTGCCCCTCTCATTGGCTCAATGAGCCTGCTGTTTAAGTCTCATGGGTTTCTCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR GCA 72 bp CTTGATGACAGATCCAAGGTCAGGAGGAAAGGAGTCTaGACGTGCTCTGGAGCTACAGACTTTCAGAAACAG +
Preference number: 3 (lower is better)
Translates to: LDDRSKVRRKGV*TCSGATDFQKQ
Trigger: CTGTTTCTGAAAGTCTGTAGCTCCAGAGCACGTGCAGACTCCTTTCCTCCTGACCTTGGATCTGTCATCAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR GCA 72 bp TCCCATTATCTGGGGTCACAAAGGCAGGCGATGTCTTaGTTTTATAAACCTCCACCCTCACCCATGGTACAG +
Preference number: 3 (lower is better)
Translates to: SHYLGSQRQAMS*FYKPPPSPMVQ
Trigger: CTGTACCATGGGTGAGGGTGGAGGTTTATAAAAGCAAGACATCGCCTGCCTTTGTGACCCCAGATAATGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR GCA 72 bp GGTGACAGGGAGGTAATAGTTAAAAGAAATAGTGTGTaGAAAGGTCTCAGGGTGTGGGAAGGGCTAGCAGCC +
Preference number: 3 (lower is better)
Translates to: GDREVIVKRNSV*KGLRVWEGLAA
Trigger: GGCTGCTAGCCCTTCCCACACCCTGAGACCTTTGCACACACTATTTCTTTTAACTATTACCTCCCTGTCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR GCA 72 bp ACAGAACAACTCACCAATTGGTCTGGGTTTCACATGTaGACTGGCTGTAAATTTTACTCCCTGCCACCCCCG +
Preference number: 3 (lower is better)
Translates to: TEQLTNWSGFHM*TGCKFYSLPPP
Trigger: CGGGGGTGGCAGGGAGTAAAATTTACAGCCAGTGCACATGTGAAACCCAGACCAATTGGTGAGTTGTTCTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR GCA 72 bp CCAGGCTGGCCTCAAGCTCAGAGATCCACCTGTTTCTaGCTCCTAAGTGCTGAGATTAAAGGTGAGAGATTT +
Preference number: 3 (lower is better)
Translates to: PGWPQAQRSTCF*LLSAEIKGERF
Trigger: AAATCTCTCACCTTTAATCTCAGCACTTAGGAGGCAGAAACAGGTGGATCTCTGAGCTTGAGGCCAGCCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR CCA 72 bp AGTCAGAAGTCTTCAAGAGAAGAGACAAAAGCACCGTaGTTGGTGCAGACAGAGGCAGCAAAGGAAGGCAGT +
Preference number: 3 (lower is better)
Translates to: SQKSSREETKAP*LVQTEAAKEGS
Trigger: ACTGCCTTCCTTTGCTGCCTCTGTCTGCACCAACCACGGTGCTTTTGTCTCTTCTCTTGAAGACTTCTGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR TCA 72 bp GTAGATTTTCCTCTCAATGACAGATGGGTGGCTGGATaGGCATACTGCGTAAGACCTCTGGACCATCATCAG +
Preference number: 3 (lower is better)
Translates to: VDFPLNDRWVAG*AYCVRPLDHHQ
Trigger: CTGATGATGGTCCAGAGGTCTTACGCAGTATGCTCATCCAGCCACCCATCTGTCATTGAGAGGAAAATCTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR GCA 72 bp GGCTTCAGTGAGCCAGAACTAATGGTTGCTCATGAATaGTGTGATGTGGCCATCTTAAACTTGAGGGTGGGA +
Preference number: 3 (lower is better)
Translates to: GFSEPELMVAHE*CDVAILNLRVG
Trigger: TCCCACCCTCAAGTTTAAGATGGCCACATCACAGCATTCATGAGCAACCATTAGTTCTGGCTCACTGAAGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR GCA 72 bp CTTTTTGCCTATTGGTATGTCTGTGTACTACTTACATaGCTGGGCCTGTGGAGAGAAGGAGGAGGAGTCAGA +
Preference number: 3 (lower is better)
Translates to: LFAYWYVCVLLT*LGLWREGGGVR
Trigger: TCTGACTCCTCCTCCTTCTCTCCACAGGCCCAGGCATGTAAGTAGTACACAGACATACCAATAGGCAAAAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR GCA 72 bp ACGTGGCTGTCATTCCGAGTGTCCAGGATACACTGGTaGTTCTCAATGGGAGGGATCTACTTTTTGCCTATT +
Preference number: 3 (lower is better)
Translates to: TWLSFRVSRIHW*FSMGGIYFLPI
Trigger: AATAGGCAAAAAGTAGATCCCTCCCATTGAGAAGCACCAGTGTATCCTGGACACTCGGAATGACAGCCACGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR-3UTR CAA 90 bp TGCCTATTGGTATGTCTGTGTACTACTTACATGCCTGGGCCTGTGGAGAGAAGGACCATCATCAGGTGTTaGACAAGGATCCATAGCTGT +
Preference number: 3 (lower is better)
Translates to: CLLVCLCTTYMPGPVERRTIIRC*TRIHSC
Trigger: ACAGCTATGGATCCTTGTCAAACACCTGATGATGGT...CCTTCTCTCCACAGGCCCAGGCATGTAAGTAGTACACAGACATACCAATAGGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR-3UTR CAA 90 bp TGCCTATTGGTATGTCTGTGTACTACTTACATGCCTGGGCCTGTGGAGAGAAGGATCCACTTGTCTTCCTaGAGAAGGAACCAGGAGAAA +
Preference number: 3 (lower is better)
Translates to: CLLVCLCTTYMPGPVERRIHLSS*RRNQEK
Trigger: TTTCTCCTGGTTCCTTCTCAAGGAAGACAAGTGGAT...CCTTCTCTCCACAGGCCCAGGCATGTAAGTAGTACACAGACATACCAATAGGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR GCA 72 bp CCAAGTGCACAACAAAGCAGAATGTCTAGTCCAATGTaGACAACACTGACACAGCACCAAGGGTATTACACG +
Preference number: 3 (lower is better)
Translates to: PSAQQSRMSSPM*TTLTQHQGYYT
Trigger: CGTGTAATACCCTTGGTGCTGTGTCAGTGTTGTGCACATTGGACTAGACATTCTGCTTTGTTGTGCACTTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR GCA 72 bp AAACCACTAGAAGGACACCAGTCTCTAAGACTGCTGTaGAAAGGGGTGAGGGCAGGATTTGTAATGGGAAAA +
Preference number: 3 (lower is better)
Translates to: KPLEGHQSLRLL*KGVRAGFVMGK
Trigger: TTTTCCCATTACAAATCCTGCCCTCACCCCTTTGCACAGCAGTCTTAGAGACTGGTGTCCTTCTAGTGGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR CCA 72 bp CTTCATTTTAAGGTTAGTCTTGAGGCTGTGGGAGAATaGATCAGGAAAGAGCGGGGTTGCTCTAGTGCTTCT +
Preference number: 3 (lower is better)
Translates to: LHFKVSLEAVGE*IRKERGCSSAS
Trigger: AGAAGCACTAGAGCAACCCCGCTCTTTCCTGATCCATTCTCCCACAGCCTCAAGACTAACCTTAAAATGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR CCA 72 bp GTGCTTCTCAATGGGAGGGATCTACTTTTTGCCTATTaGTATGTCTGTGTACTACTTACATGCCTGGGCCTG +
Preference number: 3 (lower is better)
Translates to: VLLNGRDLLFAY*YVCVLLTCLGL
Trigger: CAGGCCCAGGCATGTAAGTAGTACACAGACATACCAATAGGCAAAAAGTAGATCCCTCCCATTGAGAAGCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR CCA 72 bp AATTCAGACAGCTTCCTGCCTCTGTTTCCTGAGTGTTaGGCATTTACCAGATTTGTGGTGATCACAGTCTGG +
Preference number: 3 (lower is better)
Translates to: NSDSFLPLFPEC*AFTRFVVITVW
Trigger: CCAGACTGTGATCACCACAAATCTGGTAAATGCCCAACACTCAGGAAACAGAGGCAGGAAGCTGTCTGAATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR TCA 72 bp AAGAAAGCGCAGAGACAACCATCTGTGAGAAACCCATaGGACTTAAACAGCAGGCTCATTGAGCCAATGAGA +
Preference number: 3 (lower is better)
Translates to: KKAQRQPSVRNP*DLNSRLIEPMR
Trigger: TCTCATTGGCTCAATGAGCCTGCTGTTTAAGTCTCATGGGTTTCTCACAGATGGTTGTCTCTGCGCTTTCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR GCA 72 bp AAAAAGGGGTTTCTTCAGCTCTCGCACCATCAGCACTaGCTGGCCTTGCTTATTCTAACTGTATTAATGGTG +
Preference number: 3 (lower is better)
Translates to: KKGFLQLSHHQH*LALLILTVLMV
Trigger: CACCATTAATACAGTTAGAATAAGCAAGGCCAGGCAGTGCTGATGGTGCGAGAGCTGAAGAAACCCCTTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR CCA 72 bp GTAAGCATTCACAAATGTCAAACAGAAACACCAGACTaGGGACAGCGTCTACAATACAACAAGCCATGGCTG +
Preference number: 3 (lower is better)
Translates to: VSIHKCQTETPD*GQRLQYNKPWL
Trigger: CAGCCATGGCTTGTTGTATTGTAGACGCTGTCCCCAGTCTGGTGTTTCTGTTTGACATTTGTGAATGCTTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR CCA 72 bp AAACAGGCTATGATCTTGTCCAATCTCCCCAGATGTTaGGACTTGCAGAACAGAACAACTCACCAATTGGTC +
Preference number: 3 (lower is better)
Translates to: KQAMILSNLPRC*DLQNRTTHQLV
Trigger: GACCAATTGGTGAGTTGTTCTGTTCTGCAAGTCCCAACATCTGGGGAGATTGGACAAGATCATAGCCTGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR CCA 72 bp AGGAAAGGAGAAGCGGTAAGCAGCTGTAACTCCCACTaGAGAGTCTACTTTTTAGCTGTTTTAAAGCACCTG +
Preference number: 3 (lower is better)
Translates to: RKGEAVSSCNSH*RVYFLAVLKHL
Trigger: CAGGTGCTTTAAAACAGCTAAAAAGTAGACTCTCCAGTGGGAGTTACAGCTGCTTACCGCTTCTCCTTTCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR TCA 72 bp CTTCGGCAGTTCTGCTTCTGGCTAACTGTTCTTAACTaGGGTATGTCAACCCAAGATATGGTTTCTGTGCTT +
Preference number: 3 (lower is better)
Translates to: LRQFCFWLTVLN*GMSTQDMVSVL
Trigger: AAGCACAGAAACCATATCTTGGGTTGACATACCTCAGTTAAGAACAGTTAGCCAGAAGCAGAACTGCCGAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR TCA 72 bp ATACAGCTAGCTGAGAGGATTGACTGGATACTGGCGTaGAGGTCTAGTGACCTTGTCCATCTTGTTTTTGAA +
Preference number: 3 (lower is better)
Translates to: IQLAERIDWILA*RSSDLVHLVFE
Trigger: TTCAAAAACAAGATGGACAAGGTCACTAGACCTTCACGCCAGTATCCAGTCAATCCTCTCAGCTAGCTGTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR CCA 72 bp TCTGGGAAAGTCCCTAAATGTACTAACCTTGCTTTTTaGCTTCGGCAGTTCTGCTTCTGGCTAACTGTTCTT +
Preference number: 3 (lower is better)
Translates to: SGKVPKCTNLAF*LRQFCFWLTVL
Trigger: AAGAACAGTTAGCCAGAAGCAGAACTGCCGAAGCCAAAAAGCAAGGTTAGTACATTTAGGGACTTTCCCAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR CCA 72 bp GATGTTGGGACTTGCAGAACAGAACAACTCACCAATTaGTCTGGGTTTCACATGTGCACTGGCTGTAAATTT +
Preference number: 3 (lower is better)
Translates to: DVGTCRTEQLTN*SGFHMCTGCKF
Trigger: AAATTTACAGCCAGTGCACATGTGAAACCCAGACCAATTGGTGAGTTGTTCTGTTCTGCAAGTCCCAACATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR TCA 72 bp ATATTCCAGGGACTGGAGTCAAAGAGAAGTGGCTACTaGGTACCAAGATGTATACCTAGCATAAAAAGGGGT +
Preference number: 3 (lower is better)
Translates to: IFQGLESKRSGY*VPRCIPSIKRG
Trigger: ACCCCTTTTTATGCTAGGTATACATCTTGGTACTCAGTAGCCACTTCTCTTTGACTCCAGTCCCTGGAATAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR GCA 72 bp TTAACTGAGGTATGTCAACCCAAGATATGGTTTCTGTaGTTAACAGCTGACCCTGAGAAAGGTTTGAGGCTA +
Preference number: 3 (lower is better)
Translates to: LTEVCQPKIWFL*LTADPEKGLRL
Trigger: TAGCCTCAAACCTTTCTCAGGGTCAGCTGTTAAGCACAGAAACCATATCTTGGGTTGACATACCTCAGTTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR CCA 72 bp TTCAATTACGAGTTATATTCTCATGAGCTTGGTCACTaGAAGTATCCTAGACATTCCCAAGTAGCAGTGACC +
Preference number: 3 (lower is better)
Translates to: FNYELYSHELGH*KYPRHSQVAVT
Trigger: GGTCACTGCTACTTGGGAATGTCTAGGATACTTCCAGTGACCAAGCTCATGAGAATATAACTCGTAATTGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
CDS-3UTR TCA 90 bp TCAGCAGCAGTTGGGCTGCTCGGAACTCTGCAGGACAAGGCCCACTGGACATGGGCTTCCGATGCCGGATaGGGCAGGAGCTGTAGGCGA +
Preference number: 4 (lower is better)
Translates to: SAAVGLLGTLQDKAHWTWASDAG*GRSCRR
Trigger: TCGCCTACAGCTCCTGCCTCATCCGGCATCGGAAGC...CCATGTCCAGTGGGCCTTGTCCTGCAGAGTTCCGAGCAGCCCAACTGCTGCTGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR CAA 72 bp ACGTGGTCTTGCCCTGCTGACCAGCAGGAAGTGGAATaGACCGGAATGGCAGGCTGCTGTGGGGTGGGGCCA +
Preference number: 4 (lower is better)
Translates to: TWSCPADQQEVE*TGMAGCCGVGP
Trigger: TGGCCCCACCCCACAGCAGCCTGCCATTCCGGTCAATTCCACTTCCTGCTGGTCAGCAGGGCAAGACCACGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
CDS-3UTR GCA 90 bp TCAGAATGCTGCCTGTCATCCACCTCAGGGTTCCTCGCCCTAGCAGACAGCATGGGCCTTTTGCGCACCTaGCTCCTCCTTTGGGGCCTG +
Preference number: 4 (lower is better)
Translates to: SECCLSSTSGFLALADSMGLLRT*LLLWGL
Trigger: CAGGCCCCAAAGGAGGAGGCAGGTGCGCAAAAGGCC...CATGCTGTCTGCTAGGGCGAGGAACCCTGAGGTGGATGACAGGCAGCATTCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
CDS-3UTR TCA 90 bp AATAGATGTCCGGGAGCAGCACCAACAGCATCTGCTCACAGCACCATGGCAGCAGCTTCCGATGCCGGATaGGGCAGGAGCTGTAGGCGA +
Preference number: 4 (lower is better)
Translates to: NRCPGAAPTASAHSTMAAASDAG*GRSCRR
Trigger: TCGCCTACAGCTCCTGCCTCATCCGGCATCGGAAGC...TGCTGCCATGGTGCTGTGAGCAGATGCTGTTGGTGCTGCTCCCGGACATCTATT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
CDS-3UTR GCA 90 bp CCACACGGCGTCCAAAAGGCCTCCCTGAGCTCGCCCACCTACAGCCTTCCTGTTTTGACAGTGGCCTTTTaGGCACCTGCCTCCTCCTTT +
Preference number: 4 (lower is better)
Translates to: PHGVQKASLSSPTYSLPVLTVAF*APASSF
Trigger: AAAGGAGGAGGCAGGTGCGCAAAAGGCCACTGTCAA...AACAGGAAGGCTGTAGGTGGGCGAGCTCAGGGAGGCCTTTTGGACGCCGTGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR CAA 72 bp TGCCACTATGCCAGGGTGCCAGGGTCTGCTGAGGCTTaGGATGGATCCAGGCTACTTGTCTACGATGTGGCT +
Preference number: 4 (lower is better)
Translates to: CHYARVPGSAEA*DGSRLLVYDVA
Trigger: AGCCACATCGTAGACAAGTAGCCTGGATCCATCCAAAGCCTCAGCAGACCCTGGCACCCTGGCATAGTGGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
CDS-3UTR GCA 90 bp GCTACTTGTCTACGATGTGGCTGGGACAAGAGAAAGCAGTGTAACCCAGCTCTAGGCCTTTTGCGCACCTaGCTCCTCCTTTGGGGCCTG +
Preference number: 4 (lower is better)
Translates to: ATCLRCGWDKRKQCNPALGLLRT*LLLWGL
Trigger: CAGGCCCCAAAGGAGGAGGCAGGTGCGCAAAAGGCC...TAGAGCTGGGTTACACTGCTTTCTCTTGTCCCAGCCACATCGTAGACAAGTAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR CAA 72 bp GAGATGAGCAAGCAGGACTTGGTGCTGTCCTCAGAGTaGGTCAGAATGCTGCCTGTCATCCACCTCAGGGTT +
Preference number: 4 (lower is better)
Translates to: EMSKQDLVLSSE*VRMLPVIHLRV
Trigger: AACCCTGAGGTGGATGACAGGCAGCATTCTGACCAACTCTGAGGACAGCACCAAGTCCTGCTTGCTCATCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR CAA 72 bp CAGGGTCTGCTGAGGCTTTGGATGGATCCAGGCTACTaGTCTACGATGTGGCTGGGACAAGAGAAAGCAGTG +
Preference number: 4 (lower is better)
Translates to: QGLLRLWMDPGY*STMWLGQEKAV
Trigger: CACTGCTTTCTCTTGTCCCAGCCACATCGTAGACAAGTAGCCTGGATCCATCCAAAGCCTCAGCAGACCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR CAA 72 bp CAGAAGTCTTCAAGAGAAGAGACAAAAGCACCGTGGTaGGTGCAGACAGAGGCAGCAAAGGAAGGCAGTGGC +
Preference number: 4 (lower is better)
Translates to: QKSSREETKAPW*VQTEAAKEGSG
Trigger: GCCACTGCCTTCCTTTGCTGCCTCTGTCTGCACCAACCACGGTGCTTTTGTCTCTTCTCTTGAAGACTTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR CAA 72 bp ACTGAAGTCAGCTGCACAGAGATGAGCAAGCAGGACTaGGTGCTGTCCTCAGAGTTGGTCAGAATGCTGCCT +
Preference number: 4 (lower is better)
Translates to: TEVSCTEMSKQD*VLSSELVRMLP
Trigger: AGGCAGCATTCTGACCAACTCTGAGGACAGCACCAAGTCCTGCTTGCTCATCTCTGTGCAGCTGACTTCAGT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
CDS-3UTR TCA 90 bp TCAGAATGCTGCCTGTCATCCACCTCAGGGTTCCTCGCCCTAGCAGACAGCATGCTCTGGTGGCGAATGTaGTCTGTCTTGTGTTTAAAG +
Preference number: 4 (lower is better)
Translates to: SECCLSSTSGFLALADSMLWWRM*SVLCLK
Trigger: CTTTAAACACAAGACAGATCACATTCGCCACCAGAG...CATGCTGTCTGCTAGGGCGAGGAACCCTGAGGTGGATGACAGGCAGCATTCTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
CDS-3UTR GCA 90 bp TGCCTATTGGTATGTCTGTGTACTACTTACATGCCTGGGCCTGTGGAGAGAAGGTTGACAGTGGCCTTTTaGGCACCTGCCTCCTCCTTT +
Preference number: 4 (lower is better)
Translates to: CLLVCLCTTYMPGPVERRLTVAF*APASSF
Trigger: AAAGGAGGAGGCAGGTGCGCAAAAGGCCACTGTCAA...CCTTCTCTCCACAGGCCCAGGCATGTAAGTAGTACACAGACATACCAATAGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR CAA 72 bp AGATCTGCTCTAGCAGCCCTCCTGGTCAGCAGTCACTaGCTGTCTTTAGAACACAGACCTCACACAGCATCA +
Preference number: 4 (lower is better)
Translates to: RSALAALLVSSH*LSLEHRPHTAS
Trigger: TGATGCTGTGTGAGGTCTGTGTTCTAAAGACAGCAAGTGACTGCTGACCAGGAGGGCTGCTAGAGCAGATCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR CAA 72 bp TTTCTTCAGCTCTCGCACCATCAGCACTGCCTGGCCTaGCTTATTCTAACTGTATTAATGGTGGGGCCCTGT +
Preference number: 4 (lower is better)
Translates to: FLQLSHHQHCLA*LILTVLMVGPC
Trigger: ACAGGGCCCCACCATTAATACAGTTAGAATAAGCAAGGCCAGGCAGTGCTGATGGTGCGAGAGCTGAAGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
CDS-3UTR CCA 90 bp AAGCCATGGCTGCAGCTGTTTAAGAGGAATGCACCACACACTGCAGTGTACAGATCTGCGGGGCTTTCTTaGCTTCTTGGTTGCCTTTTT +
Preference number: 4 (lower is better)
Translates to: KPWLQLFKRNAPHTAVYRSAGLS*LLGCLF
Trigger: AAAAAGGCAACCAAGAAGCCAAGAAAGCCCCGCAGA...TCTGTACACTGCAGTGTGTGGTGCATTCCTCTTAAACAGCTGCAGCCATGGCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
CDS-3UTR CCA 90 bp ACACTTAGGTGTTTCTGGGAGCTGCCCAGTGCAAGCATTAGTCCTACAGGATCTTCTGCGGGGCTTTCTTaGCTTCTTGGTTGCCTTTTT +
Preference number: 4 (lower is better)
Translates to: TLRCFWELPSASISPTGSSAGLS*LLGCLF
Trigger: AAAAAGGCAACCAAGAAGCCAAGAAAGCCCCGCAGA...AGATCCTGTAGGACTAATGCTTGCACTGGGCAGCTCCCAGAAACACCTAAGTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
CDS-3UTR CCA 90 bp TCTCTGAGCTTCTTACTGGAGAGATCTGCTCTAGCAGCCCTCCTGGTCAGCAGTCCAGTGTGCGTTTTCTaGTGTTTTAGAAGGTTAGAA +
Preference number: 4 (lower is better)
Translates to: SLSFLLERSALAALLVSSPVCVF*CFRRLE
Trigger: TTCTAACCTTCTAAAACACCAGAAAACGCACACTGG...ACTGCTGACCAGGAGGGCTGCTAGAGCAGATCTCTCCAGTAAGAAGCTCAGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
CDS-3UTR CCA 90 bp TGCACGTGCTCTGGAGCTACAGACTTTCAGAAACAGAAGGAGGCAGCTAGTCAGCCAGTGTGCGTTTTCTaGTGTTTTAGAAGGTTAGAA +
Preference number: 4 (lower is better)
Translates to: CTCSGATDFQKQKEAASQPVCVF*CFRRLE
Trigger: TTCTAACCTTCTAAAACACCAGAAAACGCACACTGG...CTGACTAGCTGCCTCCTTCTGTTTCTGAAAGTCTGTAGCTCCAGAGCACGTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
3UTR CAA 72 bp GGTGCTTCTCAATGGGAGGGATCTACTTTTTGCCTATaGGTATGTCTGTGTACTACTTACATGCCTGGGCCT +
Preference number: 4 (lower is better)
Translates to: GASQWEGSTFCL*VCLCTTYMPGP
Trigger: AGGCCCAGGCATGTAAGTAGTACACAGACATACCAATAGGCAAAAAGTAGATCCCTCCCATTGAGAAGCACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR CAA 72 bp GCTATGATCTTGTCCAATCTCCCCAGATGTTGGGACTaGCAGAACAGAACAACTCACCAATTGGTCTGGGTT +
Preference number: 4 (lower is better)
Translates to: AMILSNLPRCWD*QNRTTHQLVWV
Trigger: AACCCAGACCAATTGGTGAGTTGTTCTGTTCTGCAAGTCCCAACATCTGGGGAGATTGGACAAGATCATAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR CAA 72 bp GAAACAGGCTATGATCTTGTCCAATCTCCCCAGATGTaGGGACTTGCAGAACAGAACAACTCACCAATTGGT +
Preference number: 4 (lower is better)
Translates to: ETGYDLVQSPQM*GLAEQNNSPIG
Trigger: ACCAATTGGTGAGTTGTTCTGTTCTGCAAGTCCCAACATCTGGGGAGATTGGACAAGATCATAGCCTGTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR CAA 72 bp TGGCGTGAAGGTCTAGTGACCTTGTCCATCTTGTTTTaGAAGGAGTATCAACTTTTAACAAGCCCAGCTCTG +
Preference number: 4 (lower is better)
Translates to: WREGLVTLSILF*KEYQLLTSPAL
Trigger: CAGAGCTGGGCTTGTTAAAAGTTGATACTCCTTCAAAAACAAGATGGACAAGGTCACTAGACCTTCACGCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR CAA 72 bp ATACACTGGTGCTTCTCAATGGGAGGGATCTACTTTTaGCCTATTGGTATGTCTGTGTACTACTTACATGCC +
Preference number: 4 (lower is better)
Translates to: IHWCFSMGGIYF*PIGMSVYYLHA
Trigger: GGCATGTAAGTAGTACACAGACATACCAATAGGCAAAAAGTAGATCCCTCCCATTGAGAAGCACCAGTGTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR CAA 72 bp GGATTGACTGGATACTGGCGTGAAGGTCTAGTGACCTaGTCCATCTTGTTTTTGAAGGAGTATCAACTTTTA +
Preference number: 4 (lower is better)
Translates to: GLTGYWREGLVT*SILFLKEYQLL
Trigger: TAAAAGTTGATACTCCTTCAAAAACAAGATGGACAAGGTCACTAGACCTTCACGCCAGTATCCAGTCAATCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
3UTR CAA 72 bp TTAATGGTCCTTAGCACTATCTATACTGACTTCATATaGAAAGTACCATTCAGGTCATCAAACTCAGCACAC +
Preference number: 4 (lower is better)
Translates to: LMVLSTIYTDFI*KVPFRSSNSAH
Trigger: GTGTGCTGAGTTTGATGACCTGAATGGTACTTTCAATATGAAGTCAGTATAGATAGTGCTAAGGACCATTAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
CDS-3UTR CAA 90 bp GTGAGCTGCCACGTGGGTACTGAGACTCAAACTTGTGTCCTCTGGGAGAGCCACGTCTGCGGGGCTTTCTaGGCTTCTTGGTTGCCTTTT +
Preference number: 5 (lower is better)
Translates to: VSCHVGTETQTCVLWESHVCGAF*ASWLPF
Trigger: AAAAGGCAACCAAGAAGCCAAGAAAGCCCCGCAGAC...GTGGCTCTCCCAGAGGACACAAGTTTGAGTCTCAGTACCCACGTGGCAGCTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
CDS-3UTR CAA 90 bp ACCCACTGCTCTCCTCAAACAGAAGAGTCCTGGACCCAGCCCAGAGCTCCCTCTAGGTTAGAACCACAGTaGAAGGCTTTTCCACACTCC +
Preference number: 5 (lower is better)
Translates to: THCSPQTEESWTQPRAPSRLEPQ*KAFPHS
Trigger: GGAGTGTGGAAAAGCCTTCAACTGTGGTTCTAACCT...AGAGGGAGCTCTGGGCTGGGTCCAGGACTCTTCTGTTTGAGGAGAGCAGTGGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
CDS-3UTR CAA 90 bp TCCCAGGGATCCTGGATGAGCTCAAGACACCCCGGGAAAAGACCACAGACCCAAAGGTTAGAACCACAGTaGAAGGCTTTTCCACACTCC +
Preference number: 5 (lower is better)
Translates to: SQGSWMSSRHPGKRPQTQRLEPQ*KAFPHS
Trigger: GGAGTGTGGAAAAGCCTTCAACTGTGGTTCTAACCT...TTGGGTCTGTGGTCTTTTCCCGGGGTGTCTTGAGCTCATCCAGGATCCCTGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000054555.10
CDS-3UTR CAA 90 bp CAACAGGGGTGTCTCTTTAGCTCTACAAAGTTCTCAGCGACCCAAAACTGTTCCGTCTGCGGGGCTTTCTaGGCTTCTTGGTTGCCTTTT +
Preference number: 5 (lower is better)
Translates to: QQGCLFSSTKFSATQNCSVCGAF*ASWLPF
Trigger: AAAAGGCAACCAAGAAGCCAAGAAAGCCCCGCAGAC...GGAACAGTTTTGGGTCGCTGAGAACTTTGTAGAGCTAAAGAGACACCCCTGTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8
CDS TCA 72 bp AGTGCTTCTTCCTCGGATGACGCTTCCGATGCCGGATaGGGCAGGAGCTGTAGGCGAAGGATTTTCCACACT +
Preference number: 6 (lower is better)
Translates to: SASSSDDASDAG*GRSCRRRIFHT
Trigger: AGTGTGGAAAATCCTTCGCCTACAGCTCCTGCCTCATCCGGCATCGGAAGCGTCATCCGAGGAAGAAGCACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054555.10
ENSMUST00000161785.8