RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZFP40 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000002617

Ensembl transcript IDs: ENSMUST00000037057.14, ENSMUST00000140313.8, ENSMUST00000172177.2

Found 68 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GACAGTTGCACCATGAAACTCCAGGCCAGCATGAAATACAGTTTATaGACACTGGATACCCAGAGCACACTACACACCTGTAGTCACATC +
Preference number: 1 (lower is better)
Translates to: DSCTMKLQASMKYSL*TLDTQSTLHTCSHI
Trigger: GATGTGACTACAGGTGTGTAGTGTGCTCTGGGTATCCAGTGTTCATAAACTGTATTTCATGCTGGCCTGGAGTTTCATGGTGCAACTGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037057.14
3UTR CCA 90 bp CAAAACCAAGTATGCTTGCCACTGAAATCCATCTTGTTTAACCAATaGGCTTTATTGGGTTACTTACATAAATACGAGAATGGAGGTGCT +
Preference number: 1 (lower is better)
Translates to: QNQVCLPLKSILFNQ*ALLGYLHKYENGGA
Trigger: AGCACCTCCATTCTCGTATTTATGTAAGTAACCCAATAAAGCCCATTGGTTAAACAAGATGGATTTCAGTGGCAAGCATACTTGGTTTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037057.14
3UTR-3UTR CCA 90 bp CTTCTCACTCTCCTCCATGAATACAAGGAAGAGAGTAGCCTTCTTTCTCAGGCTACAGTTTATGAACACTaGATACCCAGAGCACACTAC +
Preference number: 2 (lower is better)
Translates to: LLTLLHEYKEESSLLSQATVYEH*IPRAHY
Trigger: GTAGTGTGCTCTGGGTATCCAGTGTTCATAAACTGT...AGCCTGAGAAAGAAGGCTACTCTCTTCCTTGTATTCATGGAGGAGAGTGAGAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037057.14
3UTR-3UTR TCA 90 bp GAGAATGGAGGTGCTTATAGGAGTAAGAGACAGTTGCACCATGAAACTCCAGGCAGTTTCTCATGTTCATaGTTCTCTAGTGTGAAACCT +
Preference number: 2 (lower is better)
Translates to: ENGGAYRSKRQLHHETPGSFSCS*FSSVKP
Trigger: AGGTTTCACACTAGAGAATCATGAACATGAGAAACT...GCCTGGAGTTTCATGGTGCAACTGTCTCTTACTCCTATAAGCACCTCCATTCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037057.14
3UTR CAA 90 bp AAGCACAGTAAATCCTGTCAGTTTCAGGTACTGCCTGAAGATGTCTaGAGTTTATTTCCTGCCTTATTCAGCTTCCGTATTGGATGGAAT +
Preference number: 2 (lower is better)
Translates to: KHSKSCQFQVLPEDV*SLFPALFSFRIGWN
Trigger: ATTCCATCCAATACGGAAGCTGAATAAGGCAGGAAATAAACTCAAGACATCTTCAGGCAGTACCTGAAACTGACAGGATTTACTGTGCTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037057.14
3UTR CAA 90 bp GTATGCTTGCCACTGAAATCCATCTTGTTTAACCAATGGGCTTTATaGGGTTACTTACATAAATACGAGAATGGAGGTGCTTATAGGAGT +
Preference number: 2 (lower is better)
Translates to: VCLPLKSILFNQWAL*GYLHKYENGGAYRS
Trigger: ACTCCTATAAGCACCTCCATTCTCGTATTTATGTAAGTAACCCAATAAAGCCCATTGGTTAAACAAGATGGATTTCAGTGGCAAGCATAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037057.14
3UTR-3UTR TCA 90 bp AGAAACAACTCAGCTAAAATGGGAATTCATAACAAAACCAAGTATGCTTGCCACGTTTCAGGTACTGCCTaGAGATGTCTTGAGTTTATT +
Preference number: 2 (lower is better)
Translates to: RNNSAKMGIHNKTKYACHVSGTA*RCLEFI
Trigger: AATAAACTCAAGACATCTTCAGGCAGTACCTGAAAC...GTGGCAAGCATACTTGGTTTTGTTATGAATTCCCATTTTAGCTGAGTTGTTTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037057.14
3UTR-3UTR CCA 90 bp CACATGTTGTATGAGAGACTTTTCCTGGCTAGAAACAACTCAGCTAAAATGGGAGGCATTATAGCTTATTaGCTCAATGCATCAAAATGT +
Preference number: 2 (lower is better)
Translates to: HMLYERLFLARNNSAKMGGIIAY*LNASKC
Trigger: ACATTTTGATGCATTGAGCCAATAAGCTATAATGCC...TCCCATTTTAGCTGAGTTGTTTCTAGCCAGGAAAAGTCTCTCATACAACATGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000037057.14
3UTR-3UTR CCA 90 bp CACATGTTGTATGAGAGACTTTTCCTGGCTAGAAACAACTCAGCTAAAATGGGAACCAATGGGCTTTATTaGGTTACTTACATAAATACG +
Preference number: 2 (lower is better)
Translates to: HMLYERLFLARNNSAKMGTNGLY*VTYINT
Trigger: CGTATTTATGTAAGTAACCCAATAAAGCCCATTGGT...TCCCATTTTAGCTGAGTTGTTTCTAGCCAGGAAAAGTCTCTCATACAACATGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037057.14
3UTR CCA 72 bp GTATTTGCTCATGGACAGTGGTGTTCTGAGGGTCATTaGAGTTGGACTGAATCATGGGGTCTAAGCATGAGC +
Preference number: 3 (lower is better)
Translates to: VFAHGQWCSEGH*SWTESWGLSMS
Trigger: GCTCATGCTTAGACCCCATGATTCAGTCCAACTCCAATGACCCTCAGAACACCACTGTCCATGAGCAAATAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037057.14
3UTR TCA 72 bp ACCATGAAACTCCAGGCCAGCATGAAATACAGTTTATaGACACTGGATACCCAGAGCACACTACACACCTGT +
Preference number: 3 (lower is better)
Translates to: TMKLQASMKYSL*TLDTQSTLHTC
Trigger: ACAGGTGTGTAGTGTGCTCTGGGTATCCAGTGTTCATAAACTGTATTTCATGCTGGCCTGGAGTTTCATGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037057.14
3UTR-3UTR CAA 90 bp CTTCTCACTCTCCTCCATGAATACAAGGAAGAGAGTAGCCTTCTTTCTCAGGCTCAAAACCAAGTATGCTaGCCACTGAAATCCATCTTG +
Preference number: 3 (lower is better)
Translates to: LLTLLHEYKEESSLLSQAQNQVC*PLKSIL
Trigger: CAAGATGGATTTCAGTGGCAAGCATACTTGGTTTTG...AGCCTGAGAAAGAAGGCTACTCTCTTCCTTGTATTCATGGAGGAGAGTGAGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037057.14
3UTR CCA 72 bp AATGGGTTCAGCACATGTTGTATGAGAGACTTTTCCTaGCTAGAAACAACTCAGCTAAAATGGGAATTCATA +
Preference number: 3 (lower is better)
Translates to: NGFSTCCMRDFS*LETTQLKWEFI
Trigger: TATGAATTCCCATTTTAGCTGAGTTGTTTCTAGCCAGGAAAAGTCTCTCATACAACATGTGCTGAACCCATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037057.14
3UTR CCA 72 bp GCTCAATGCATCAAAATGTCTTCTAAGCAGCAAAACTaGTATGAGTTTCTTCAAAGTAAGCACAGTAAATCC +
Preference number: 3 (lower is better)
Translates to: AQCIKMSSKQQN*YEFLQSKHSKS
Trigger: GGATTTACTGTGCTTACTTTGAAGAAACTCATACCAGTTTTGCTGCTTAGAAGACATTTTGATGCATTGAGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037057.14
3UTR CCA 72 bp AGTCACATCTACTGGTTAAAGGGCATTATAGCTTATTaGCTCAATGCATCAAAATGTCTTCTAAGCAGCAAA +
Preference number: 3 (lower is better)
Translates to: SHIYWLKGIIAY*LNASKCLLSSK
Trigger: TTTGCTGCTTAGAAGACATTTTGATGCATTGAGCCAATAAGCTATAATGCCCTTTAACCAGTAGATGTGACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037057.14
3UTR CCA 72 bp GTATGCTTGCCACTGAAATCCATCTTGTTTAACCAATaGGCTTTATTGGGTTACTTACATAAATACGAGAAT +
Preference number: 3 (lower is better)
Translates to: VCLPLKSILFNQ*ALLGYLHKYEN
Trigger: ATTCTCGTATTTATGTAAGTAACCCAATAAAGCCCATTGGTTAAACAAGATGGATTTCAGTGGCAAGCATAC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037057.14
CDS-3UTR TCA 90 bp GAGAATGGAGGTGCTTATAGGAGTAAGAGACAGTTGCACCATGAAACTCCAGGCCCACAGCCACATTTCTaGATGTCAGTAGATCCTGGG +
Preference number: 4 (lower is better)
Translates to: ENGGAYRSKRQLHHETPGPQPHF*MSVDPG
Trigger: CCCAGGATCTACTGACATTCAGAAATGTGGCTGTGG...GCCTGGAGTTTCATGGTGCAACTGTCTCTTACTCCTATAAGCACCTCCATTCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037057.14
CDS-3UTR TCA 90 bp GTGAAACCTGTAGTGGTCTATTACTACAGAGCTTGTCTAAAGCATATGCCACAGCCACAGCCACATTTCTaGATGTCAGTAGATCCTGGG +
Preference number: 4 (lower is better)
Translates to: VKPVVVYYYRACLKHMPQPQPHF*MSVDPG
Trigger: CCCAGGATCTACTGACATTCAGAAATGTGGCTGTGG...CTGTGGCATATGCTTTAGACAAGCTCTGTAGTAATAGACCACTACAGGTTTCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037057.14
ENSMUST00000172177.2
CDS-3UTR CCA 90 bp GACTTCTCACTCTCCTCCATGAATACAAGGAAGAGAGTAGCCTTCTTTCTCAGGAGACGGGAACTCTTCTaGATCCTTTGCTACAGTTTC +
Preference number: 4 (lower is better)
Translates to: DFSLSSMNTRKRVAFFLRRRELF*ILCYSF
Trigger: GAAACTGTAGCAAAGGATCCAGAAGAGTTCCCGTCT...CCTGAGAAAGAAGGCTACTCTCTTCCTTGTATTCATGGAGGAGAGTGAGAAGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037057.14
CDS-3UTR TCA 90 bp GTGAAACCTGTAGTGGTCTATTACTACAGAGCTTGTCTAAAGCATATGCCACAGCCTGTTGCTCCTTTCTaGGTTTCTGTCTCAGGAACA +
Preference number: 4 (lower is better)
Translates to: VKPVVVYYYRACLKHMPQPVAPF*VSVSGT
Trigger: TGTTCCTGAGACAGAAACTCAGAAAGGAGCAACAGG...CTGTGGCATATGCTTTAGACAAGCTCTGTAGTAATAGACCACTACAGGTTTCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037057.14
ENSMUST00000172177.2
CDS-3UTR GCA 90 bp GAGAATGGAGGTGCTTATAGGAGTAAGAGACAGTTGCACCATGAAACTCCAGGCAGCCATTTTTCCTGTTaGTCCTTTCTGAGTTTCTGT +
Preference number: 4 (lower is better)
Translates to: ENGGAYRSKRQLHHETPGSHFSC*SFLSFC
Trigger: ACAGAAACTCAGAAAGGAGCAACAGGAAAAATGGCT...GCCTGGAGTTTCATGGTGCAACTGTCTCTTACTCCTATAAGCACCTCCATTCTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037057.14
CDS-3UTR TCA 90 bp CACATGTTGTATGAGAGACTTTTCCTGGCTAGAAACAACTCAGCTAAAATGGGACCTGTTGCTCCTTTCTaGGTTTCTGTCTCAGGAACA +
Preference number: 4 (lower is better)
Translates to: HMLYERLFLARNNSAKMGPVAPF*VSVSGT
Trigger: TGTTCCTGAGACAGAAACTCAGAAAGGAGCAACAGG...TCCCATTTTAGCTGAGTTGTTTCTAGCCAGGAAAAGTCTCTCATACAACATGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037057.14
CDS-3UTR TCA 90 bp GACTTCTCACTCTCCTCCATGAATACAAGGAAGAGAGTAGCCTTCTTTCTCAGGGTCCATTTGTGTATATaGGCCAATGATGGAACACAA +
Preference number: 4 (lower is better)
Translates to: DFSLSSMNTRKRVAFFLRVHLCI*ANDGTQ
Trigger: TTGTGTTCCATCATTGGCTCATATACACAAATGGAC...CCTGAGAAAGAAGGCTACTCTCTTCCTTGTATTCATGGAGGAGAGTGAGAAGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037057.14
CDS-3UTR TCA 90 bp GTGAAACCTGTAGTGGTCTATTACTACAGAGCTTGTCTAAAGCATATGCCACAGATGTCTTTGAAGACCTaGAGAGGAGGAAAGGGATTT +
Preference number: 4 (lower is better)
Translates to: VKPVVVYYYRACLKHMPQMSLKT*RGGKGF
Trigger: AAATCCCTTTCCTCCTCTTCAGGTCTTCAAAGACAT...CTGTGGCATATGCTTTAGACAAGCTCTGTAGTAATAGACCACTACAGGTTTCAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037057.14
ENSMUST00000140313.8
ENSMUST00000172177.2
CDS-3UTR CCA 90 bp AGTGTGAAACCTGTAGTGGTCTATTACTACAGAGCTTGTCTAAAGCATATGCCAAGACGGGAACTCTTCTaGATCCTTTGCTACAGTTTC +
Preference number: 4 (lower is better)
Translates to: SVKPVVVYYYRACLKHMPRRELF*ILCYSF
Trigger: GAAACTGTAGCAAAGGATCCAGAAGAGTTCCCGTCT...TGGCATATGCTTTAGACAAGCTCTGTAGTAATAGACCACTACAGGTTTCACACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037057.14
ENSMUST00000172177.2
CDS-3UTR CCA 90 bp GTGAAACCTGTAGTGGTCTATTACTACAGAGCTTGTCTAAAGCATATGCCACAGAATGTCAGTAGATCCTaGGGCACATCTATCAGAGAA +
Preference number: 4 (lower is better)
Translates to: VKPVVVYYYRACLKHMPQNVSRS*GTSIRE
Trigger: TTCTCTGATAGATGTGCCCCAGGATCTACTGACATT...CTGTGGCATATGCTTTAGACAAGCTCTGTAGTAATAGACCACTACAGGTTTCAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037057.14
ENSMUST00000172177.2
CDS-3UTR TCA 90 bp CACATGTTGTATGAGAGACTTTTCCTGGCTAGAAACAACTCAGCTAAAATGGGAGGCCTCTCTCCTCCATaGATTTTATGGTGTCTTTTA +
Preference number: 4 (lower is better)
Translates to: HMLYERLFLARNNSAKMGGLSPP*ILWCLL
Trigger: TAAAAGACACCATAAAATTCATGGAGGAGAGAGGCC...TCCCATTTTAGCTGAGTTGTTTCTAGCCAGGAAAAGTCTCTCATACAACATGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000037057.14
CDS-3UTR TCA 90 bp AGTGTGAAACCTGTAGTGGTCTATTACTACAGAGCTTGTCTAAAGCATATGCCAGGCCTCTCTCCTCCATaGATTTTATGGTGTCTTTTA +
Preference number: 4 (lower is better)
Translates to: SVKPVVVYYYRACLKHMPGLSPP*ILWCLL
Trigger: TAAAAGACACCATAAAATTCATGGAGGAGAGAGGCC...TGGCATATGCTTTAGACAAGCTCTGTAGTAATAGACCACTACAGGTTTCACACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037057.14
ENSMUST00000140313.8
ENSMUST00000172177.2
CDS-3UTR TCA 90 bp TGTGAAACCTGTAGTGGTCTATTACTACAGAGCTTGTCTAAAGCATATGCCACAATGTCTTTGAAGACCTaGAGAGGAGGAAAGGGATTT +
Preference number: 4 (lower is better)
Translates to: CETCSGLLLQSLSKAYATMSLKT*RGGKGF
Trigger: AAATCCCTTTCCTCCTCTTCAGGTCTTCAAAGACAT...TGTGGCATATGCTTTAGACAAGCTCTGTAGTAATAGACCACTACAGGTTTCACA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037057.14
ENSMUST00000140313.8
ENSMUST00000172177.2
CDS-3UTR GCA 90 bp AGTGTGAAACCTGTAGTGGTCTATTACTACAGAGCTTGTCTAAAGCATATGCCACTCTTCTGGATCCTTTaGTACAGTTTCCTCTCTTCA +
Preference number: 4 (lower is better)
Translates to: SVKPVVVYYYRACLKHMPLFWIL*YSFLSS
Trigger: TGAAGAGAGGAAACTGTAGCAAAGGATCCAGAAGAG...TGGCATATGCTTTAGACAAGCTCTGTAGTAATAGACCACTACAGGTTTCACACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037057.14
ENSMUST00000172177.2
CDS-3UTR TCA 90 bp TGTGAAACCTGTAGTGGTCTATTACTACAGAGCTTGTCTAAAGCATATGCCACAGTCCATTTGTGTATATaGGCCAATGATGGAACACAA +
Preference number: 4 (lower is better)
Translates to: CETCSGLLLQSLSKAYATVHLCI*ANDGTQ
Trigger: TTGTGTTCCATCATTGGCTCATATACACAAATGGAC...TGTGGCATATGCTTTAGACAAGCTCTGTAGTAATAGACCACTACAGGTTTCACA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037057.14
ENSMUST00000140313.8
ENSMUST00000172177.2
CDS-3UTR TCA 90 bp CCTGTAGTGGTCTATTACTACAGAGCTTGTCTAAAGCATATGCCACAGTATTTAGGCCTCTCTCCTCCATaGATTTTATGGTGTCTTTTA +
Preference number: 4 (lower is better)
Translates to: PVVVYYYRACLKHMPQYLGLSPP*ILWCLL
Trigger: TAAAAGACACCATAAAATTCATGGAGGAGAGAGGCC...TAAATACTGTGGCATATGCTTTAGACAAGCTCTGTAGTAATAGACCACTACAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037057.14
ENSMUST00000140313.8
ENSMUST00000172177.2
CDS-3UTR TCA 90 bp GTGAAACCTGTAGTGGTCTATTACTACAGAGCTTGTCTAAAGCATATGCCACAGGTTGGGATTTCTGAATaGAGCATTTGTTACATTCAG +
Preference number: 4 (lower is better)
Translates to: VKPVVVYYYRACLKHMPQVGISE*SICYIQ
Trigger: CTGAATGTAACAAATGCTTCATTCAGAAATCCCAAC...CTGTGGCATATGCTTTAGACAAGCTCTGTAGTAATAGACCACTACAGGTTTCAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037057.14
ENSMUST00000140313.8
ENSMUST00000172177.2
CDS-3UTR TCA 90 bp GTGAAACCTGTAGTGGTCTATTACTACAGAGCTTGTCTAAAGCATATGCCACAGATGTTTTCTAAGAACTaGGCCACCAGTAAAGGATTT +
Preference number: 4 (lower is better)
Translates to: VKPVVVYYYRACLKHMPQMFSKN*ATSKGF
Trigger: AAATCCTTTACTGGTGGCTCAGTTCTTAGAAAACAT...CTGTGGCATATGCTTTAGACAAGCTCTGTAGTAATAGACCACTACAGGTTTCAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037057.14
ENSMUST00000140313.8
ENSMUST00000172177.2
CDS-3UTR GCA 90 bp AGTGTGAAACCTGTAGTGGTCTATTACTACAGAGCTTGTCTAAAGCATATGCCAAGCCATTTTTCCTGTTaGTCCTTTCTGAGTTTCTGT +
Preference number: 4 (lower is better)
Translates to: SVKPVVVYYYRACLKHMPSHFSC*SFLSFC
Trigger: ACAGAAACTCAGAAAGGAGCAACAGGAAAAATGGCT...TGGCATATGCTTTAGACAAGCTCTGTAGTAATAGACCACTACAGGTTTCACACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037057.14
ENSMUST00000172177.2
CDS-3UTR GCA 90 bp CACATGTTGTATGAGAGACTTTTCCTGGCTAGAAACAACTCAGCTAAAATGGGAATTCTTCTTCCTCAGTaGTCCTACTTTTATGTGCCT +
Preference number: 4 (lower is better)
Translates to: HMLYERLFLARNNSAKMGILLPQ*SYFYVP
Trigger: AGGCACATAAAAGTAGGAGCACTGAGGAAGAAGAAT...TCCCATTTTAGCTGAGTTGTTTCTAGCCAGGAAAAGTCTCTCATACAACATGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000037057.14
CDS-3UTR GCA 90 bp TGTGAAACCTGTAGTGGTCTATTACTACAGAGCTTGTCTAAAGCATATGCCACAAGGAGGAAAGGGATTTaGCACATTCATTACATCTGT +
Preference number: 4 (lower is better)
Translates to: CETCSGLLLQSLSKAYATRRKGI*HIHYIC
Trigger: ACAGATGTAATGAATGTGGCAAATCCCTTTCCTCCT...TGTGGCATATGCTTTAGACAAGCTCTGTAGTAATAGACCACTACAGGTTTCACA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037057.14
ENSMUST00000140313.8
ENSMUST00000172177.2
CDS-3UTR CCA 90 bp AGTGTGAAACCTGTAGTGGTCTATTACTACAGAGCTTGTCTAAAGCATATGCCACTAAGATTGGCTTTCTaGATAAAGCATTTGCCACAG +
Preference number: 4 (lower is better)
Translates to: SVKPVVVYYYRACLKHMPLRLAF*IKHLPQ
Trigger: CTGTGGCAAATGCTTTATCCAGAAAGCCAATCTTAG...TGGCATATGCTTTAGACAAGCTCTGTAGTAATAGACCACTACAGGTTTCACACT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037057.14
ENSMUST00000140313.8
ENSMUST00000172177.2
CDS-3UTR TCA 90 bp CACATGTTGTATGAGAGACTTTTCCTGGCTAGAAACAACTCAGCTAAAATGGGAGTTGGGATTTCTGAATaGAGCATTTGTTACATTCAG +
Preference number: 4 (lower is better)
Translates to: HMLYERLFLARNNSAKMGVGISE*SICYIQ
Trigger: CTGAATGTAACAAATGCTTCATTCAGAAATCCCAAC...TCCCATTTTAGCTGAGTTGTTTCTAGCCAGGAAAAGTCTCTCATACAACATGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037057.14
CDS-3UTR TCA 90 bp TGTGAAACCTGTAGTGGTCTATTACTACAGAGCTTGTCTAAAGCATATGCCACAGTTGGGATTTCTGAATaGAGCATTTGTTACATTCAG +
Preference number: 4 (lower is better)
Translates to: CETCSGLLLQSLSKAYATVGISE*SICYIQ
Trigger: CTGAATGTAACAAATGCTTCATTCAGAAATCCCAAC...TGTGGCATATGCTTTAGACAAGCTCTGTAGTAATAGACCACTACAGGTTTCACA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037057.14
ENSMUST00000140313.8
ENSMUST00000172177.2
CDS-3UTR TCA 90 bp AGTGTGAAACCTGTAGTGGTCTATTACTACAGAGCTTGTCTAAAGCATATGCCAATGTTTTCTAAGAACTaGGCCACCAGTAAAGGATTT +
Preference number: 4 (lower is better)
Translates to: SVKPVVVYYYRACLKHMPMFSKN*ATSKGF
Trigger: AAATCCTTTACTGGTGGCTCAGTTCTTAGAAAACAT...TGGCATATGCTTTAGACAAGCTCTGTAGTAATAGACCACTACAGGTTTCACACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037057.14
ENSMUST00000140313.8
ENSMUST00000172177.2
CDS-3UTR GCA 90 bp ATGAGAGACTTTTCCTGGCTAGAAACAACTCAGCTAAAATGGGAATTCATAACACTCTTCTGGATCCTTTaGTACAGTTTCCTCTCTTCA +
Preference number: 4 (lower is better)
Translates to: MRDFSWLETTQLKWEFITLFWIL*YSFLSS
Trigger: TGAAGAGAGGAAACTGTAGCAAAGGATCCAGAAGAG...TGTTATGAATTCCCATTTTAGCTGAGTTGTTTCTAGCCAGGAAAAGTCTCTCAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037057.14
CDS-3UTR CCA 90 bp AGAAACAACTCAGCTAAAATGGGAATTCATAACAAAACCAAGTATGCTTGCCACAATGTCAGTAGATCCTaGGGCACATCTATCAGAGAA +
Preference number: 4 (lower is better)
Translates to: RNNSAKMGIHNKTKYACHNVSRS*GTSIRE
Trigger: TTCTCTGATAGATGTGCCCCAGGATCTACTGACATT...GTGGCAAGCATACTTGGTTTTGTTATGAATTCCCATTTTAGCTGAGTTGTTTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037057.14
3UTR CAA 72 bp CCACTGAAATCCATCTTGTTTAACCAATGGGCTTTATaGGGTTACTTACATAAATACGAGAATGGAGGTGCT +
Preference number: 4 (lower is better)
Translates to: PLKSILFNQWAL*GYLHKYENGGA
Trigger: AGCACCTCCATTCTCGTATTTATGTAAGTAACCCAATAAAGCCCATTGGTTAAACAAGATGGATTTCAGTGG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037057.14
CDS-3UTR TCA 90 bp TTGAGTTTATTTCCTGCCTTATTCAGCTTCCGTATTGGATGGAATGTTTTAGTTATGTCTTTGAAGACCTaGAGAGGAGGAAAGGGATTT +
Preference number: 4 (lower is better)
Translates to: LSLFPALFSFRIGWNVLVMSLKT*RGGKGF
Trigger: AAATCCCTTTCCTCCTCTTCAGGTCTTCAAAGACAT...AACTAAAACATTCCATCCAATACGGAAGCTGAATAAGGCAGGAAATAAACTCAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037057.14
CDS-3UTR TCA 90 bp CCTGTAGTGGTCTATTACTACAGAGCTTGTCTAAAGCATATGCCACAGTATTTAATGTTTTCTAAGAACTaGGCCACCAGTAAAGGATTT +
Preference number: 4 (lower is better)
Translates to: PVVVYYYRACLKHMPQYLMFSKN*ATSKGF
Trigger: AAATCCTTTACTGGTGGCTCAGTTCTTAGAAAACAT...TAAATACTGTGGCATATGCTTTAGACAAGCTCTGTAGTAATAGACCACTACAGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037057.14
ENSMUST00000140313.8
ENSMUST00000172177.2
CDS-3UTR TCA 90 bp CTAAAATGGGAATTCATAACAAAACCAAGTATGCTTGCCACTGAAATCCATCTTATGTATAGAGCTCTTTaGGAGGAGTTGAGATATTCC +
Preference number: 4 (lower is better)
Translates to: LKWEFITKPSMLATEIHLMYRAL*EELRYS
Trigger: GGAATATCTCAACTCCTCTCAAAGAGCTCTATACAT...AAGATGGATTTCAGTGGCAAGCATACTTGGTTTTGTTATGAATTCCCATTTTAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037057.14
CDS TCA 90 bp GGCACATCTATCAGAGAAGCAGCCATTTTTCCTGTTGCTCCTTTCTaGGTTTCTGTCTCAGGAACAAAGACGGGAACTCTTCTGGATCCT +
Preference number: 5 (lower is better)
Translates to: GTSIREAAIFPVAPF*VSVSGTKTGTLLDP
Trigger: AGGATCCAGAAGAGTTCCCGTCTTTGTTCCTGAGACAGAAACTCAGAAAGGAGCAACAGGAAAAATGGCTGCTTCTCTGATAGATGTGCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037057.14
ENSMUST00000172177.2
CDS-3UTR CAA 90 bp GAGAATGGAGGTGCTTATAGGAGTAAGAGACAGTTGCACCATGAAACTCCAGGCGAGGAGGAAAGGGATTaGCCACATTCATTACATCTG +
Preference number: 5 (lower is better)
Translates to: ENGGAYRSKRQLHHETPGEEERD*PHSLHL
Trigger: CAGATGTAATGAATGTGGCAAATCCCTTTCCTCCTC...GCCTGGAGTTTCATGGTGCAACTGTCTCTTACTCCTATAAGCACCTCCATTCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037057.14
CDS-3UTR CAA 90 bp GTGAAACCTGTAGTGGTCTATTACTACAGAGCTTGTCTAAAGCATATGCCACAGACTCTTCTGGATCCTTaGCTACAGTTTCCTCTCTTC +
Preference number: 5 (lower is better)
Translates to: VKPVVVYYYRACLKHMPQTLLDP*LQFPLF
Trigger: GAAGAGAGGAAACTGTAGCAAAGGATCCAGAAGAGT...CTGTGGCATATGCTTTAGACAAGCTCTGTAGTAATAGACCACTACAGGTTTCAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037057.14
ENSMUST00000172177.2
CDS-3UTR CAA 90 bp GACTTCTCACTCTCCTCCATGAATACAAGGAAGAGAGTAGCCTTCTTTCTCAGGATTATAAGGTGTGCTTaGGGAGGATTCATAAAGCAT +
Preference number: 5 (lower is better)
Translates to: DFSLSSMNTRKRVAFFLRIIRCA*GGFIKH
Trigger: ATGCTTTATGAATCCTCCCAAAGCACACCTTATAAT...CCTGAGAAAGAAGGCTACTCTCTTCCTTGTATTCATGGAGGAGAGTGAGAAGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037057.14
CDS-3UTR CAA 90 bp AGTGTGAAACCTGTAGTGGTCTATTACTACAGAGCTTGTCTAAAGCATATGCCAGAGGAGGAAAGGGATTaGCCACATTCATTACATCTG +
Preference number: 5 (lower is better)
Translates to: SVKPVVVYYYRACLKHMPEEERD*PHSLHL
Trigger: CAGATGTAATGAATGTGGCAAATCCCTTTCCTCCTC...TGGCATATGCTTTAGACAAGCTCTGTAGTAATAGACCACTACAGGTTTCACACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037057.14
ENSMUST00000140313.8
ENSMUST00000172177.2
CDS-3UTR CAA 90 bp CTTCTCACTCTCCTCCATGAATACAAGGAAGAGAGTAGCCTTCTTTCTCAGGCTTCCTGTATAAATTCTTaGATGAGTTCTAAGGTAGGC +
Preference number: 5 (lower is better)
Translates to: LLTLLHEYKEESSLLSQASCINS*MSSKVG
Trigger: GCCTACCTTAGAACTCATCAAAGAATTTATACAGGA...AGCCTGAGAAAGAAGGCTACTCTCTTCCTTGTATTCATGGAGGAGAGTGAGAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037057.14
CDS-3UTR CAA 90 bp CCTGTAGTGGTCTATTACTACAGAGCTTGTCTAAAGCATATGCCACAGTATTTACAGCCATTTTTCCTGTaGCTCCTTTCTGAGTTTCTG +
Preference number: 5 (lower is better)
Translates to: PVVVYYYRACLKHMPQYLQPFFL*LLSEFL
Trigger: CAGAAACTCAGAAAGGAGCAACAGGAAAAATGGCTG...TAAATACTGTGGCATATGCTTTAGACAAGCTCTGTAGTAATAGACCACTACAGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037057.14
ENSMUST00000172177.2
CDS-3UTR CAA 90 bp GTGAAACCTGTAGTGGTCTATTACTACAGAGCTTGTCTAAAGCATATGCCACAGTCACTCCCATACATCTaGCAGTTTTCTGTAGTATCA +
Preference number: 5 (lower is better)
Translates to: VKPVVVYYYRACLKHMPQSLPYI*QFSVVS
Trigger: TGATACTACAGAAAACTGCAAGATGTATGGGAGTGA...CTGTGGCATATGCTTTAGACAAGCTCTGTAGTAATAGACCACTACAGGTTTCAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037057.14
ENSMUST00000140313.8
ENSMUST00000172177.2
CDS-3UTR CAA 90 bp CCTGTAGTGGTCTATTACTACAGAGCTTGTCTAAAGCATATGCCACAGTATTTAGAGGAGGAAAGGGATTaGCCACATTCATTACATCTG +
Preference number: 5 (lower is better)
Translates to: PVVVYYYRACLKHMPQYLEEERD*PHSLHL
Trigger: CAGATGTAATGAATGTGGCAAATCCCTTTCCTCCTC...TAAATACTGTGGCATATGCTTTAGACAAGCTCTGTAGTAATAGACCACTACAGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037057.14
ENSMUST00000140313.8
ENSMUST00000172177.2
CDS-3UTR CAA 90 bp AGAAACAACTCAGCTAAAATGGGAATTCATAACAAAACCAAGTATGCTTGCCACCAGCCATTTTTCCTGTaGCTCCTTTCTGAGTTTCTG +
Preference number: 5 (lower is better)
Translates to: RNNSAKMGIHNKTKYACHQPFFL*LLSEFL
Trigger: CAGAAACTCAGAAAGGAGCAACAGGAAAAATGGCTG...GTGGCAAGCATACTTGGTTTTGTTATGAATTCCCATTTTAGCTGAGTTGTTTCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000037057.14
CDS-3UTR CAA 90 bp CACAGGTTTATAGCCATATTTTCATTTGTCTCACCAAGGACTTCTCACTCTCCTTCACTCCCATACATCTaGCAGTTTTCTGTAGTATCA +
Preference number: 5 (lower is better)
Translates to: HRFIAIFSFVSPRTSHSPSLPYI*QFSVVS
Trigger: TGATACTACAGAAAACTGCAAGATGTATGGGAGTGA...AGGAGAGTGAGAAGTCCTTGGTGAGACAAATGAAAATATGGCTATAAACCTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037057.14
CDS-3UTR CAA 90 bp TGTGAAACCTGTAGTGGTCTATTACTACAGAGCTTGTCTAAAGCATATGCCACATCACTCCCATACATCTaGCAGTTTTCTGTAGTATCA +
Preference number: 5 (lower is better)
Translates to: CETCSGLLLQSLSKAYATSLPYI*QFSVVS
Trigger: TGATACTACAGAAAACTGCAAGATGTATGGGAGTGA...TGTGGCATATGCTTTAGACAAGCTCTGTAGTAATAGACCACTACAGGTTTCACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037057.14
ENSMUST00000140313.8
ENSMUST00000172177.2
CDS-3UTR CAA 90 bp GTGAAACCTGTAGTGGTCTATTACTACAGAGCTTGTCTAAAGCATATGCCACAGTCTAAGGTAGGCTTCTaGGATAAAGGATTAGTCAAA +
Preference number: 5 (lower is better)
Translates to: VKPVVVYYYRACLKHMPQSKVGF*DKGLVK
Trigger: TTTGACTAATCCTTTATCCAAGAAGCCTACCTTAGA...CTGTGGCATATGCTTTAGACAAGCTCTGTAGTAATAGACCACTACAGGTTTCAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037057.14
ENSMUST00000140313.8
ENSMUST00000172177.2
CDS-3UTR CAA 90 bp GTGAAACCTGTAGTGGTCTATTACTACAGAGCTTGTCTAAAGCATATGCCACAGTCCTGTATAAATTCTTaGATGAGTTCTAAGGTAGGC +
Preference number: 5 (lower is better)
Translates to: VKPVVVYYYRACLKHMPQSCINS*MSSKVG
Trigger: GCCTACCTTAGAACTCATCAAAGAATTTATACAGGA...CTGTGGCATATGCTTTAGACAAGCTCTGTAGTAATAGACCACTACAGGTTTCAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037057.14
ENSMUST00000140313.8
ENSMUST00000172177.2
CDS-3UTR CAA 90 bp AGTGTGAAACCTGTAGTGGTCTATTACTACAGAGCTTGTCTAAAGCATATGCCAATTATAAGGTGTGCTTaGGGAGGATTCATAAAGCAT +
Preference number: 5 (lower is better)
Translates to: SVKPVVVYYYRACLKHMPIIRCA*GGFIKH
Trigger: ATGCTTTATGAATCCTCCCAAAGCACACCTTATAAT...TGGCATATGCTTTAGACAAGCTCTGTAGTAATAGACCACTACAGGTTTCACACT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037057.14
ENSMUST00000140313.8
ENSMUST00000172177.2
CDS-3UTR CAA 90 bp AGTGTGAAACCTGTAGTGGTCTATTACTACAGAGCTTGTCTAAAGCATATGCCATCTAAGGTAGGCTTCTaGGATAAAGGATTAGTCAAA +
Preference number: 5 (lower is better)
Translates to: SVKPVVVYYYRACLKHMPSKVGF*DKGLVK
Trigger: TTTGACTAATCCTTTATCCAAGAAGCCTACCTTAGA...TGGCATATGCTTTAGACAAGCTCTGTAGTAATAGACCACTACAGGTTTCACACT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037057.14
ENSMUST00000140313.8
ENSMUST00000172177.2
CDS-3UTR CAA 90 bp CCTGTAGTGGTCTATTACTACAGAGCTTGTCTAAAGCATATGCCACAGTATTTATCCTGTATAAATTCTTaGATGAGTTCTAAGGTAGGC +
Preference number: 5 (lower is better)
Translates to: PVVVYYYRACLKHMPQYLSCINS*MSSKVG
Trigger: GCCTACCTTAGAACTCATCAAAGAATTTATACAGGA...TAAATACTGTGGCATATGCTTTAGACAAGCTCTGTAGTAATAGACCACTACAGG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037057.14
ENSMUST00000140313.8
ENSMUST00000172177.2
CDS GCA 90 bp TATGATTTGAACTTTGATCCATGTCCTCTTCGTATTTACCACATATaGAATGGTTTTCTACAAAGACTAGATTGCTGTAATTCTCCCACA +
Preference number: 5 (lower is better)
Translates to: YDLNFDPCPLRIYHI*NGFLQRLDCCNSPT
Trigger: TGTGGGAGAATTACAGCAATCTAGTCTTTGTAGAAAACCATTGCATATGTGGTAAATACGAAGAGGACATGGATCAAAGTTCAAATCATA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037057.14
ENSMUST00000140313.8
ENSMUST00000172177.2
CDS GCA 72 bp GGGCACATCTATCAGAGAAGCAGCCATTTTTCCTGTTaGTCCTTTCTGAGTTTCTGTCTCAGGAACAAAGAC +
Preference number: 6 (lower is better)
Translates to: GHIYQRSSHFSC*SFLSFCLRNKD
Trigger: GTCTTTGTTCCTGAGACAGAAACTCAGAAAGGAGCAACAGGAAAAATGGCTGCTTCTCTGATAGATGTGCCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037057.14
ENSMUST00000172177.2
CDS CAA 72 bp GTTTTCTGTAGTATCACTTGTATTATAAGGTGTGCTTaGGGAGGATTCATAAAGCATTTTGTCAAGCTCATG +
Preference number: 6 (lower is better)
Translates to: VFCSITCIIRCA*GGFIKHFVKLM
Trigger: CATGAGCTTGACAAAATGCTTTATGAATCCTCCCAAAGCACACCTTATAATACAAGTGATACTACAGAAAAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037057.14
ENSMUST00000140313.8
ENSMUST00000172177.2
CDS GCA 72 bp AACTTTGATCCATGTCCTCTTCGTATTTACCACATATaGAATGGTTTTCTACAAAGACTAGATTGCTGTAAT +
Preference number: 6 (lower is better)
Translates to: NFDPCPLRIYHI*NGFLQRLDCCN
Trigger: ATTACAGCAATCTAGTCTTTGTAGAAAACCATTGCATATGTGGTAAATACGAAGAGGACATGGATCAAAGTT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037057.14
ENSMUST00000140313.8
ENSMUST00000172177.2