Pregenerated sensors for ZFP383 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000099689Ensembl transcript IDs: ENSMUST00000186475.2, ENSMUST00000187028.7
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCTCCACATTCCGGAGCATCTGTAAAACCGGAGCACGAGAGGCTGTaGTTTGAAAGTCTCATTAGCTCCCTCTGGCAGGACTCGATCTCA | + |
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Preference number: 1 (lower is better) Translates to: PPHSGASVKPEHERL*FESLISSLWQDSIS Trigger: TGAGATCGAGTCCTGCCAGAGGGAGCTAATGAGACTTTCAAAGCACAGCCTCTCGTGCTCCGGTTTTACAGATGCTCCGGAATGTGGAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000187028.7 |
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| 3UTR CCA 90 bp | CCGGAGCACGAGAGGCTGTGCTTTGAAAGTCTCATTAGCTCCCTCTaGCAGGACTCGATCTCATACACTTCCTTCTTTAGAGATAATAAC | + |
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Preference number: 1 (lower is better) Translates to: PEHERLCFESLISSL*QDSISYTSFFRDNN Trigger: GTTATTATCTCTAAAGAAGGAAGTGTATGAGATCGAGTCCTGCCAGAGGGAGCTAATGAGACTTTCAAAGCACAGCCTCTCGTGCTCCGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000187028.7 |
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| 3UTR-3UTR GCA 90 bp | AGCAGATGCAGAAGGAACACAAACACACGAACTACACACATCTTCCGCAGAACGGAGCACGAGAGGCTGTaGTTTGAAAGTCTCATTAGC | + |
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Preference number: 2 (lower is better) Translates to: SRCRRNTNTRTTHIFRRTEHERL*FESLIS Trigger: GCTAATGAGACTTTCAAAGCACAGCCTCTCGTGCTC...CGTTCTGCGGAAGATGTGTGTAGTTCGTGTGTTTGTGTTCCTTCTGCATCTGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000187028.7 |
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| 3UTR-3UTR CCA 90 bp | AGCAGATGCAGAAGGAACACAAACACACGAACTACACACATCTTCCGCAGAACGCAACTAGCAGTGATGTaGGAGAAGACACTACCCAGA | + |
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Preference number: 2 (lower is better) Translates to: SRCRRNTNTRTTHIFRRTQLAVM*EKTLPR Trigger: TCTGGGTAGTGTCTTCTCCCACATCACTGCTAGTTG...CGTTCTGCGGAAGATGTGTGTAGTTCGTGTGTTTGTGTTCCTTCTGCATCTGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000186475.2 ENSMUST00000187028.7 |
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| 3UTR-3UTR TCA 90 bp | AGAGCTATGAGCAAACATAAACACAGTATGGCAGACCCCCAAGCAAGAGGTGAAATGGTTTGTAAGGGCTaGGCCACTACTAAAGGCCTT | + |
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Preference number: 2 (lower is better) Translates to: RAMSKHKHSMADPQARGEMVCKG*ATTKGL Trigger: AAGGCCTTTAGTAGTGGCTCAGCCCTTACAAACCAT...TTCACCTCTTGCTTGGGGGTCTGCCATACTGTGTTTATGTTTGCTCATAGCTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000187028.7 |
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| 3UTR-3UTR CCA 90 bp | AGAGCTATGAGCAAACATAAACACAGTATGGCAGACCCCCAAGCAAGAGGTGAAAACATAAACACAGTATaGCAGACCCCCAAGCAAGAG | + |
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Preference number: 2 (lower is better) Translates to: RAMSKHKHSMADPQARGENINTV*QTPKQE Trigger: CTCTTGCTTGGGGGTCTGCCATACTGTGTTTATGTT...TTCACCTCTTGCTTGGGGGTCTGCCATACTGTGTTTATGTTTGCTCATAGCTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000186475.2 ENSMUST00000187028.7 |
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| 3UTR-3UTR TCA 90 bp | AGAGCTATGAGCAAACATAAACACAGTATGGCAGACCCCCAAGCAAGAGGTGAAACAGGCCTAGAGCTATaGGCAAACATAAACACAGTA | + |
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Preference number: 2 (lower is better) Translates to: RAMSKHKHSMADPQARGETGLEL*ANINTV Trigger: TACTGTGTTTATGTTTGCTCATAGCTCTAGGCCTGT...TTCACCTCTTGCTTGGGGGTCTGCCATACTGTGTTTATGTTTGCTCATAGCTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000186475.2 ENSMUST00000187028.7 |
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| 3UTR-3UTR TCA 90 bp | AGCAGATGCAGAAGGAACACAAACACACGAACTACACACATCTTCCGCAGAACGGTTCATCTTCACGTCTaGGCTTTGGATTTTCTAGTT | + |
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Preference number: 2 (lower is better) Translates to: SRCRRNTNTRTTHIFRRTVHLHV*ALDFLV Trigger: AACTAGAAAATCCAAAGCTCAGACGTGAAGATGAAC...CGTTCTGCGGAAGATGTGTGTAGTTCGTGTGTTTGTGTTCCTTCTGCATCTGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000186475.2 ENSMUST00000187028.7 |
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| 3UTR-3UTR CCA 90 bp | ACACTACCCAGAGGCTTGGAACTCATAGCCTACAGCCAAATAATTCAGATGAAACAACTAGCAGTGATGTaGGAGAAGACACTACCCAGA | + |
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Preference number: 2 (lower is better) Translates to: TLPRGLELIAYSQIIQMKQLAVM*EKTLPR Trigger: TCTGGGTAGTGTCTTCTCCCACATCACTGCTAGTTG...TTTCATCTGAATTATTTGGCTGTAGGCTATGAGTTCCAAGCCTCTGGGTAGTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000186475.2 ENSMUST00000187028.7 |
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| 3UTR-3UTR CCA 90 bp | AGAGCTATGAGCAAACATAAACACAGTATGGCAGACCCCCAAGCAAGAGGTGAATTCATTGAGTTCTCATaGCAAACCAATACGTACACA | + |
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Preference number: 2 (lower is better) Translates to: RAMSKHKHSMADPQARGEFIEFS*QTNTYT Trigger: TGTGTACGTATTGGTTTGCCATGAGAACTCAATGAA...TTCACCTCTTGCTTGGGGGTCTGCCATACTGTGTTTATGTTTGCTCATAGCTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000186475.2 ENSMUST00000187028.7 |
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| 3UTR-3UTR TCA 90 bp | TCTACCGATTTGATAGTCGTCATCTATAATCAACACAATCACAGTTCATCTTCACTTCCATGTCCACCTTaGAATTGGCCTCCACATTCC | + |
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Preference number: 2 (lower is better) Translates to: STDLIVVIYNQHNHSSSSLPCPP*NWPPHS Trigger: GGAATGTGGAGGCCAATTTCAAGGTGGACATGGAAG...TGAAGATGAACTGTGATTGTGTTGATTATAGATGACGACTATCAAATCGGTAGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000187028.7 |
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| 3UTR-3UTR CCA 90 bp | AGAGCTATGAGCAAACATAAACACAGTATGGCAGACCCCCAAGCAAGAGGTGAAATAAACTGTGAGTTCTaGGTAAAGACCTTTTTACAC | + |
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Preference number: 2 (lower is better) Translates to: RAMSKHKHSMADPQARGEINCEF*VKTFLH Trigger: GTGTAAAAAGGTCTTTACCCAGAACTCACAGTTTAT...TTCACCTCTTGCTTGGGGGTCTGCCATACTGTGTTTATGTTTGCTCATAGCTCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000187028.7 |
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| 3UTR-3UTR CCA 90 bp | ACACTACCCAGAGGCTTGGAACTCATAGCCTACAGCCAAATAATTCAGATGAAATTCATTGAGTTCTCATaGCAAACCAATACGTACACA | + |
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Preference number: 2 (lower is better) Translates to: TLPRGLELIAYSQIIQMKFIEFS*QTNTYT Trigger: TGTGTACGTATTGGTTTGCCATGAGAACTCAATGAA...TTTCATCTGAATTATTTGGCTGTAGGCTATGAGTTCCAAGCCTCTGGGTAGTGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000186475.2 ENSMUST00000187028.7 |
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| 3UTR-3UTR GCA 90 bp | TCTACCGATTTGATAGTCGTCATCTATAATCAACACAATCACAGTTCATCTTCATATCTAGTCAAACAATaGCAGAGAGTAACTGTCAAG | + |
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Preference number: 2 (lower is better) Translates to: STDLIVVIYNQHNHSSSSYLVKQ*QRVTVK Trigger: CTTGACAGTTACTCTCTGGCATTGTTTGACTAGATA...TGAAGATGAACTGTGATTGTGTTGATTATAGATGACGACTATCAAATCGGTAGA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000186475.2 ENSMUST00000187028.7 |
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| 3UTR GCA 72 bp | TCCGGAGCATCTGTAAAACCGGAGCACGAGAGGCTGTaGTTTGAAAGTCTCATTAGCTCCCTCTGGCAGGAC | + |
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Preference number: 3 (lower is better) Translates to: SGASVKPEHERL*FESLISSLWQD Trigger: GTCCTGCCAGAGGGAGCTAATGAGACTTTCAAAGCACAGCCTCTCGTGCTCCGGTTTTACAGATGCTCCGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000187028.7 |
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| 3UTR-3UTR CAA 90 bp | AGAGCTATGAGCAAACATAAACACAGTATGGCAGACCCCCAAGCAAGAGGTGAAACACTACCCAGAGGCTaGGAACTCATAGCCTACAGC | + |
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Preference number: 3 (lower is better) Translates to: RAMSKHKHSMADPQARGETLPRG*ELIAYS Trigger: GCTGTAGGCTATGAGTTCCAAGCCTCTGGGTAGTGT...TTCACCTCTTGCTTGGGGGTCTGCCATACTGTGTTTATGTTTGCTCATAGCTCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000186475.2 ENSMUST00000187028.7 |
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| 3UTR-3UTR CAA 90 bp | ACACTACCCAGAGGCTTGGAACTCATAGCCTACAGCCAAATAATTCAGATGAAAACACTACCCAGAGGCTaGGAACTCATAGCCTACAGC | + |
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Preference number: 3 (lower is better) Translates to: TLPRGLELIAYSQIIQMKTLPRG*ELIAYS Trigger: GCTGTAGGCTATGAGTTCCAAGCCTCTGGGTAGTGT...TTTCATCTGAATTATTTGGCTGTAGGCTATGAGTTCCAAGCCTCTGGGTAGTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000186475.2 ENSMUST00000187028.7 |
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| 3UTR-3UTR CAA 90 bp | ACACTACCCAGAGGCTTGGAACTCATAGCCTACAGCCAAATAATTCAGATGAAAATGTCCACCTTGAAATaGGCCTCCACATTCCGGAGC | + |
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Preference number: 3 (lower is better) Translates to: TLPRGLELIAYSQIIQMKMSTLK*ASTFRS Trigger: GCTCCGGAATGTGGAGGCCAATTTCAAGGTGGACAT...TTTCATCTGAATTATTTGGCTGTAGGCTATGAGTTCCAAGCCTCTGGGTAGTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000187028.7 |
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| 3UTR TCA 72 bp | ACACAGTTTAGAGAACAAAAGACAGGCCTAGAGCTATaGGCAAACATAAACACAGTATGGCAGACCCCCAAG | + |
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Preference number: 3 (lower is better) Translates to: TQFREQKTGLEL*ANINTVWQTPK Trigger: CTTGGGGGTCTGCCATACTGTGTTTATGTTTGCTCATAGCTCTAGGCCTGTCTTTTGTTCTCTAAACTGTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000186475.2 ENSMUST00000187028.7 |
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| 3UTR-3UTR CAA 90 bp | ACACTACCCAGAGGCTTGGAACTCATAGCCTACAGCCAAATAATTCAGATGAAACTATTTATGAGTTCATaGAGTTCTCATGGCAAACCA | + |
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Preference number: 3 (lower is better) Translates to: TLPRGLELIAYSQIIQMKLFMSS*SSHGKP Trigger: TGGTTTGCCATGAGAACTCAATGAACTCATAAATAG...TTTCATCTGAATTATTTGGCTGTAGGCTATGAGTTCCAAGCCTCTGGGTAGTGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000186475.2 ENSMUST00000187028.7 |
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| CDS-3UTR GCA 90 bp | GGGAATGTGAAGTCCTGCTTACAAGAAAAGACATGGAACATAGTTACGCTGTGGTTGTACAAGTCTCTCTaGGCGGGGCCCAGACACTCC | + |
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Preference number: 4 (lower is better) Translates to: GNVKSCLQEKTWNIVTLWLYKSL*AGPRHS Trigger: GGAGTGTCTGGGCCCCGCGCAGAGAGACTTGTACAA...CCACAGCGTAACTATGTTCCATGTCTTTTCTTGTAAGCAGGACTTCACATTCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000187028.7 |
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| CDS-3UTR GCA 90 bp | ACACTACCCAGAGGCTTGGAACTCATAGCCTACAGCCAAATAATTCAGATGAAATTGTACAAGTCTCTCTaGGCGGGGCCCAGACACTCC | + |
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Preference number: 4 (lower is better) Translates to: TLPRGLELIAYSQIIQMKLYKSL*AGPRHS Trigger: GGAGTGTCTGGGCCCCGCGCAGAGAGACTTGTACAA...TTTCATCTGAATTATTTGGCTGTAGGCTATGAGTTCCAAGCCTCTGGGTAGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000186475.2 ENSMUST00000187028.7 |
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| CDS-3UTR GCA 90 bp | GGGAATGTGAAGTCCTGCTTACAAGAAAAGACATGGAACATAGTTACGCTGTGGCACTGCAGAGATGGCTaGGCTGCTGATACAGGTGTC | + |
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Preference number: 4 (lower is better) Translates to: GNVKSCLQEKTWNIVTLWHCRDG*AADTGV Trigger: GACACCTGTATCAGCAGCGCAGCCATCTCTGCAGTG...CCACAGCGTAACTATGTTCCATGTCTTTTCTTGTAAGCAGGACTTCACATTCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000187028.7 |
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| CDS-3UTR CCA 90 bp | AGCAGATGCAGAAGGAACACAAACACACGAACTACACACATCTTCCGCAGAACGAGATCACCTGAGGCTTaGGAATGTGAAGTCCCACTG | + |
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Preference number: 4 (lower is better) Translates to: SRCRRNTNTRTTHIFRRTRSPEA*ECEVPL Trigger: CAGTGGGACTTCACATTCCCAAGCCTCAGGTGATCT...CGTTCTGCGGAAGATGTGTGTAGTTCGTGTGTTTGTGTTCCTTCTGCATCTGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186475.2 |
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| CDS-3UTR TCA 90 bp | AGAGCTATGAGCAAACATAAACACAGTATGGCAGACCCCCAAGCAAGAGGTGAACTTCCATGTCCACCTTaGAATTGGCCTCCACATTCC | + |
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Preference number: 4 (lower is better) Translates to: RAMSKHKHSMADPQARGELPCPP*NWPPHS Trigger: GGAATGTGGAGGCCAATTTCAAGGTGGACATGGAAG...TTCACCTCTTGCTTGGGGGTCTGCCATACTGTGTTTATGTTTGCTCATAGCTCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000186475.2 |
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| CDS-3UTR TCA 90 bp | AGCAGATGCAGAAGGAACACAAACACACGAACTACACACATCTTCCGCAGAACGGGTTTCTCACCTGTATaGACTCGCACGTGTTGGAAA | + |
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Preference number: 4 (lower is better) Translates to: SRCRRNTNTRTTHIFRRTGFSPV*TRTCWK Trigger: TTTCCAACACGTGCGAGTTCATACAGGTGAGAAACC...CGTTCTGCGGAAGATGTGTGTAGTTCGTGTGTTTGTGTTCCTTCTGCATCTGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186475.2 |
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| CDS-3UTR TCA 90 bp | AGCAGATGCAGAAGGAACACAAACACACGAACTACACACATCTTCCGCAGAACGATGGTTTGTAAGGGCTaGGCCACTACTAAAGGCCTT | + |
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Preference number: 4 (lower is better) Translates to: SRCRRNTNTRTTHIFRRTMVCKG*ATTKGL Trigger: AAGGCCTTTAGTAGTGGCTCAGCCCTTACAAACCAT...CGTTCTGCGGAAGATGTGTGTAGTTCGTGTGTTTGTGTTCCTTCTGCATCTGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186475.2 |
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| CDS-3UTR TCA 90 bp | AGCAGATGCAGAAGGAACACAAACACACGAACTACACACATCTTCCGCAGAACGATGGCGAGTAACATGTaGCCCACAACTGAAGAACTT | + |
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Preference number: 4 (lower is better) Translates to: SRCRRNTNTRTTHIFRRTMASNM*PTTEEL Trigger: AAGTTCTTCAGTTGTGGGTCACATGTTACTCGCCAT...CGTTCTGCGGAAGATGTGTGTAGTTCGTGTGTTTGTGTTCCTTCTGCATCTGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186475.2 |
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| CDS-3UTR GCA 90 bp | AGAGCTATGAGCAAACATAAACACAGTATGGCAGACCCCCAAGCAAGAGGTGAAGAGCACGAGAGGCTGTaGTTTGAAAGTCTCATTAGC | + |
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Preference number: 4 (lower is better) Translates to: RAMSKHKHSMADPQARGEEHERL*FESLIS Trigger: GCTAATGAGACTTTCAAAGCACAGCCTCTCGTGCTC...TTCACCTCTTGCTTGGGGGTCTGCCATACTGTGTTTATGTTTGCTCATAGCTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000186475.2 |
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| CDS-3UTR CCA 90 bp | AGCAGATGCAGAAGGAACACAAACACACGAACTACACACATCTTCCGCAGAACGTTCTTATTTTTGGCGTaGTCCACCGCCATTCCTCTT | + |
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Preference number: 4 (lower is better) Translates to: SRCRRNTNTRTTHIFRRTFLFLA*STAIPL Trigger: AAGAGGAATGGCGGTGGACCACGCCAAAAATAAGAA...CGTTCTGCGGAAGATGTGTGTAGTTCGTGTGTTTGTGTTCCTTCTGCATCTGCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000186475.2 ENSMUST00000187028.7 |
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| 3UTR CAA 72 bp | CTAGCAGTGATGTGGGAGAAGACACTACCCAGAGGCTaGGAACTCATAGCCTACAGCCAAATAATTCAGATG | + |
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Preference number: 4 (lower is better) Translates to: LAVMWEKTLPRG*ELIAYSQIIQM Trigger: CATCTGAATTATTTGGCTGTAGGCTATGAGTTCCAAGCCTCTGGGTAGTGTCTTCTCCCACATCACTGCTAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000186475.2 ENSMUST00000187028.7 |
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| CDS-3UTR GCA 90 bp | AGCAGATGCAGAAGGAACACAAACACACGAACTACACACATCTTCCGCAGAACGCTGAAACCAGGTATTTaGAAACAAGGAGCAGGAGTT | + |
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Preference number: 4 (lower is better) Translates to: SRCRRNTNTRTTHIFRRTLKPGI*KQGAGV Trigger: AACTCCTGCTCCTTGTTTGCAAATACCTGGTTTCAG...CGTTCTGCGGAAGATGTGTGTAGTTCGTGTGTTTGTGTTCCTTCTGCATCTGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000187028.7 |
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| CDS-3UTR CCA 90 bp | AGAGCTATGAGCAAACATAAACACAGTATGGCAGACCCCCAAGCAAGAGGTGAATTCTTATTTTTGGCGTaGTCCACCGCCATTCCTCTT | + |
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Preference number: 4 (lower is better) Translates to: RAMSKHKHSMADPQARGEFLFLA*STAIPL Trigger: AAGAGGAATGGCGGTGGACCACGCCAAAAATAAGAA...TTCACCTCTTGCTTGGGGGTCTGCCATACTGTGTTTATGTTTGCTCATAGCTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000186475.2 ENSMUST00000187028.7 |
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| CDS-3UTR TCA 90 bp | ACACTACCCAGAGGCTTGGAACTCATAGCCTACAGCCAAATAATTCAGATGAAACCAGCATGGATTCTTTaGTGTTGCCTAAGCTGTGAG | + |
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Preference number: 4 (lower is better) Translates to: TLPRGLELIAYSQIIQMKPAWIL*CCLSCE Trigger: CTCACAGCTTAGGCAACATCAAAGAATCCATGCTGG...TTTCATCTGAATTATTTGGCTGTAGGCTATGAGTTCCAAGCCTCTGGGTAGTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186475.2 |
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| CDS-3UTR TCA 90 bp | AGAGCTATGAGCAAACATAAACACAGTATGGCAGACCCCCAAGCAAGAGGTGAAATGTTGAATAAACTGTaGGTTCTGGGTAAAGACCTT | + |
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Preference number: 4 (lower is better) Translates to: RAMSKHKHSMADPQARGEMLNKL*VLGKDL Trigger: AAGGTCTTTACCCAGAACTCACAGTTTATTCAACAT...TTCACCTCTTGCTTGGGGGTCTGCCATACTGTGTTTATGTTTGCTCATAGCTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000186475.2 |
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| 3UTR CAA 72 bp | ACTACACACATCTTCCGCAGAACGCGTTCTACCGATTaGATAGTCGTCATCTATAATCAACACAATCACAGT | + |
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Preference number: 4 (lower is better) Translates to: TTHIFRRTRSTD*IVVIYNQHNHS Trigger: ACTGTGATTGTGTTGATTATAGATGACGACTATCAAATCGGTAGAACGCGTTCTGCGGAAGATGTGTGTAGT 42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000186475.2 ENSMUST00000187028.7 |
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| CDS-3UTR TCA 90 bp | ACACTACCCAGAGGCTTGGAACTCATAGCCTACAGCCAAATAATTCAGATGAAAATGGTCAATGAGATTTaGGCAGTAGCTAAAGGCTTT | + |
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Preference number: 4 (lower is better) Translates to: TLPRGLELIAYSQIIQMKMVNEI*AVAKGF Trigger: AAAGCCTTTAGCTACTGCTCAAATCTCATTGACCAT...TTTCATCTGAATTATTTGGCTGTAGGCTATGAGTTCCAAGCCTCTGGGTAGTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186475.2 |
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| CDS-3UTR TCA 90 bp | TCTACCGATTTGATAGTCGTCATCTATAATCAACACAATCACAGTTCATCTTCATTCAGGTGGCAAGCTTaGAAGGCAGCTGAGAAATTC | + |
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Preference number: 4 (lower is better) Translates to: STDLIVVIYNQHNHSSSSFRWQA*KAAEKF Trigger: GAATTTCTCAGCTGCCTTTCAAGCTTGCCACCTGAA...TGAAGATGAACTGTGATTGTGTTGATTATAGATGACGACTATCAAATCGGTAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000187028.7 |
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| CDS-3UTR TCA 90 bp | TCTACCGATTTGATAGTCGTCATCTATAATCAACACAATCACAGTTCATCTTCAAATGTGAAGTCCCACTaGGAGCAGGTTGCTATAGTT | + |
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Preference number: 4 (lower is better) Translates to: STDLIVVIYNQHNHSSSSNVKSH*EQVAIV Trigger: AACTATAGCAACCTGCTCTCAGTGGGACTTCACATT...TGAAGATGAACTGTGATTGTGTTGATTATAGATGACGACTATCAAATCGGTAGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186475.2 |
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| CDS-3UTR CCA 90 bp | ACACTACCCAGAGGCTTGGAACTCATAGCCTACAGCCAAATAATTCAGATGAAAATAAACTGTGAGTTCTaGGTAAAGACCTTTTTACAC | + |
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Preference number: 4 (lower is better) Translates to: TLPRGLELIAYSQIIQMKINCEF*VKTFLH Trigger: GTGTAAAAAGGTCTTTACCCAGAACTCACAGTTTAT...TTTCATCTGAATTATTTGGCTGTAGGCTATGAGTTCCAAGCCTCTGGGTAGTGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000186475.2 |
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| CDS GCA 90 bp | CCTGTCTCTCAGGCTTCTGTTTCCGCCCAGCTGAAACCAGGTATTTaGAAACAAGGAGCAGGAGTTCAGGTGGCAAGCTTGAAAGGCAGC | + |
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Preference number: 5 (lower is better) Translates to: PVSQASVSAQLKPGI*KQGAGVQVASLKGS Trigger: GCTGCCTTTCAAGCTTGCCACCTGAACTCCTGCTCCTTGTTTGCAAATACCTGGTTTCAGCTGGGCGGAAACAGAAGCCTGAGAGACAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000187028.7 |
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| CDS-3UTR CAA 90 bp | TCTACCGATTTGATAGTCGTCATCTATAATCAACACAATCACAGTTCATCTTCAATGTCCACCTTGAAATaGGCCTCCACATTCCGGAGC | + |
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Preference number: 5 (lower is better) Translates to: STDLIVVIYNQHNHSSSSMSTLK*ASTFRS Trigger: GCTCCGGAATGTGGAGGCCAATTTCAAGGTGGACAT...TGAAGATGAACTGTGATTGTGTTGATTATAGATGACGACTATCAAATCGGTAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186475.2 |
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| CDS-3UTR CAA 90 bp | TCTACCGATTTGATAGTCGTCATCTATAATCAACACAATCACAGTTCATCTTCAGCTGAAACCAGGTATTaGCAAACAAGGAGCAGGAGT | + |
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Preference number: 5 (lower is better) Translates to: STDLIVVIYNQHNHSSSSAETRY*QTRSRS Trigger: ACTCCTGCTCCTTGTTTGCAAATACCTGGTTTCAGC...TGAAGATGAACTGTGATTGTGTTGATTATAGATGACGACTATCAAATCGGTAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000187028.7 |
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| CDS CCA 72 bp | ACGTCACTGAACACCACCGGTTTCTTATTTTTGGCGTaGTCCACCGCCATTCCTCTTTTCTCCACTGGGTAC | + |
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Preference number: 6 (lower is better) Translates to: TSLNTTGFLFLA*STAIPLFSTGY Trigger: GTACCCAGTGGAGAAAAGAGGAATGGCGGTGGACCACGCCAAAAATAAGAAACCGGTGGTGTTCAGTGACGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000186475.2 ENSMUST00000187028.7 |
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| CDS CAA 72 bp | AGAGACACGTCACTGAACACCACCGGTTTCTTATTTTaGGCGTGGTCCACCGCCATTCCTCTTTTCTCCACT | + |
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Preference number: 6 (lower is better) Translates to: RDTSLNTTGFLF*AWSTAIPLFST Trigger: AGTGGAGAAAAGAGGAATGGCGGTGGACCACGCCAAAAATAAGAAACCGGTGGTGTTCAGTGACGTGTCTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000186475.2 ENSMUST00000187028.7 |
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