Pregenerated sensors for ZFP354A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020364Ensembl transcript IDs: ENSMUST00000020628.6, ENSMUST00000102766.10, ENSMUST00000109119.8, ENSMUST00000109122.8
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAGGCAGAGGCAGGCAGATCTCTGAGGCCAGCCTGGTCTACAGAGTaGATTCCTGAACAGTCAGGGCTACACACAGAGAAACCCTGTCTC | + |
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Preference number: 1 (lower is better) Translates to: KAEAGRSLRPAWSTE*IPEQSGLHTEKPCL Trigger: GAGACAGGGTTTCTCTGTGTGTAGCCCTGACTGTTCAGGAATTCACTCTGTAGACCAGGCTGGCCTCAGAGATCTGCCTGCCTCTGCCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109122.8 |
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| 3UTR CCA 90 bp | CTGAGGCTGCTTCAAACTCATGGAGTCAAGCAATCCTCATGTCTCTaGGTCCCAGTAGCTACATGTATGAACCCCTGGATCTCAAGTAAT | + |
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Preference number: 1 (lower is better) Translates to: LRLLQTHGVKQSSCL*VPVATCMNPWISSN Trigger: ATTACTTGAGATCCAGGGGTTCATACATGTAGCTACTGGGACCCAGAGACATGAGGATTGCTTGACTCCATGAGTTTGAAGCAGCCTCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102766.10 ENSMUST00000109122.8 |
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| 3UTR GCA 90 bp | ACCTGGTGTGAGATGGCTGTCTTCCCATGTCCCTACAGAGCATTTTaGAGAAAATTGTCACACCAAATAATTTCTGGGTCTGGATCAGCA | + |
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Preference number: 1 (lower is better) Translates to: TWCEMAVFPCPYRAF*RKLSHQIISGSGSA Trigger: TGCTGATCCAGACCCAGAAATTATTTGGTGTGACAATTTTCTGCAAAATGCTCTGTAGGGACATGGGAAGACAGCCATCTCACACCAGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109122.8 |
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| 3UTR CCA 90 bp | CAACAGCAACAACAAAAACCTCTGGGAACAGAATTAATAACTAGGTaGACTATCTCCAATTCACAATACCAGGAGATGAGCTTTTTATTT | + |
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Preference number: 1 (lower is better) Translates to: QQQQQKPLGTELITR*TISNSQYQEMSFLF Trigger: AAATAAAAAGCTCATCTCCTGGTATTGTGAATTGGAGATAGTCCACCTAGTTATTAATTCTGTTCCCAGAGGTTTTTGTTGTTGCTGTTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000109122.8 |
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| 3UTR-3UTR TCA 90 bp | GAGTTTAGTGTTTTGCTACTGAGAAGTCCAGCGCACTCCTCTGTGCACTTAGATCAAGGTCTTCAACTGTaGACTCTCCATTTCAGGTCA | + |
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Preference number: 2 (lower is better) Translates to: EFSVLLLRSPAHSSVHLDQGLQL*TLHFRS Trigger: TGACCTGAAATGGAGAGTTCACAGTTGAAGACCTTG...ATCTAAGTGCACAGAGGAGTGCGCTGGACTTCTCAGTAGCAAAACACTAAACTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102766.10 ENSMUST00000109122.8 |
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| 3UTR-3UTR GCA 90 bp | CCGGTCAAGAAAAGGAGATGTTCCAGAGACTTAAGAGGTAGATTACAGCTCATTGTTTCTAGCACACACTaGTGCAGAGAGAAAAGCACC | + |
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Preference number: 2 (lower is better) Translates to: PVKKRRCSRDLRGRLQLIVSSTH*CREKST Trigger: GGTGCTTTTCTCTCTGCAGCAGTGTGTGCTAGAAAC...AATGAGCTGTAATCTACCTCTTAAGTCTCTGGAACATCTCCTTTTCTTGACCGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000102766.10 ENSMUST00000109122.8 |
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| 3UTR-3UTR CCA 90 bp | AATAATAGCAAGATCTTCAGCATTTTCCTACAGGTGTTAGATTTGCCATGTCTTGTGAGCCACCTGACATaGGTGCTGGAACCTGAGGCT | + |
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Preference number: 2 (lower is better) Translates to: NNSKIFSIFLQVLDLPCLVSHLT*VLEPEA Trigger: AGCCTCAGGTTCCAGCACCCATGTCAGGTGGCTCAC...AAGACATGGCAAATCTAACACCTGTAGGAAAATGCTGAAGATCTTGCTATTATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109122.8 |
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| 3UTR-3UTR TCA 90 bp | CCGGTCAAGAAAAGGAGATGTTCCAGAGACTTAAGAGGTAGATTACAGCTCATTCAAGGTCTTCAACTGTaGACTCTCCATTTCAGGTCA | + |
|
Preference number: 2 (lower is better) Translates to: PVKKRRCSRDLRGRLQLIQGLQL*TLHFRS Trigger: TGACCTGAAATGGAGAGTTCACAGTTGAAGACCTTG...AATGAGCTGTAATCTACCTCTTAAGTCTCTGGAACATCTCCTTTTCTTGACCGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102766.10 ENSMUST00000109122.8 |
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| 3UTR-3UTR CCA 90 bp | ACTGCTGCAGAGAGAAAAGCACCATTTTACAAATACCTGAAGTCAAGGTCTTCACAATCCTCATGTCTCTaGGTCCCAGTAGCTACATGT | + |
|
Preference number: 2 (lower is better) Translates to: TAAERKAPFYKYLKSRSSQSSCL*VPVATC Trigger: ACATGTAGCTACTGGGACCCAGAGACATGAGGATTG...TGAAGACCTTGACTTCAGGTATTTGTAAAATGGTGCTTTTCTCTCTGCAGCAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000102766.10 ENSMUST00000109122.8 |
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| 3UTR-3UTR TCA 90 bp | CGAAAACATACCTTTCAAAGGTATCTTCTTATGCTATTTGAGAGACAGCTGAAAGTGTGCAATTGCCTGTaGGGACTAGAGACATCAGAT | + |
|
Preference number: 2 (lower is better) Translates to: RKHTFQRYLLMLFERQLKVCNCL*GLETSD Trigger: ATCTGATGTCTCTAGTCCTCACAGGCAATTGCACAC...TTTCAGCTGTCTCTCAAATAGCATAAGAAGATACCTTTGAAAGGTATGTTTTCG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109122.8 |
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| 3UTR-3UTR TCA 90 bp | TTAATAACTAGGTGGACTATCTCCAATTCACAATACCAGGAGATGAGCTTTTTATCCATTTCAGGTCACTaGTCTTTTGAGATGGAAACC | + |
|
Preference number: 2 (lower is better) Translates to: LITRWTISNSQYQEMSFLSISGH*SFEMET Trigger: GGTTTCCATCTCAAAAGATCAGTGACCTGAAATGGA...TAAAAAGCTCATCTCCTGGTATTGTGAATTGGAGATAGTCCACCTAGTTATTAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109122.8 |
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| 3UTR-3UTR TCA 90 bp | AATAATAGCAAGATCTTCAGCATTTTCCTACAGGTGTTAGATTTGCCATGTCTTATATCCACACACATTTaGAATCCGGTCAAGAAAAGG | + |
|
Preference number: 2 (lower is better) Translates to: NNSKIFSIFLQVLDLPCLISTHI*NPVKKR Trigger: CCTTTTCTTGACCGGATTTCAAATGTGTGTGGATAT...AAGACATGGCAAATCTAACACCTGTAGGAAAATGCTGAAGATCTTGCTATTATT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109122.8 |
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| 3UTR TCA 72 bp | GCAGGCAGATCTCTGAGGCCAGCCTGGTCTACAGAGTaGATTCCTGAACAGTCAGGGCTACACACAGAGAAA | + |
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Preference number: 3 (lower is better) Translates to: AGRSLRPAWSTE*IPEQSGLHTEK Trigger: TTTCTCTGTGTGTAGCCCTGACTGTTCAGGAATTCACTCTGTAGACCAGGCTGGCCTCAGAGATCTGCCTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109122.8 |
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| 3UTR CCA 72 bp | AACCTCCCTAGGTTTGCTGAGGCTGCTTCAAACTCATaGAGTCAAGCAATCCTCATGTCTCTGGGTCCCAGT | + |
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Preference number: 3 (lower is better) Translates to: NLPRFAEAASNS*SQAILMSLGPS Trigger: ACTGGGACCCAGAGACATGAGGATTGCTTGACTCCATGAGTTTGAAGCAGCCTCAGCAAACCTAGGGAGGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102766.10 ENSMUST00000109122.8 |
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| 3UTR CCA 72 bp | CTTCAAACTCATGGAGTCAAGCAATCCTCATGTCTCTaGGTCCCAGTAGCTACATGTATGAACCCCTGGATC | + |
|
Preference number: 3 (lower is better) Translates to: LQTHGVKQSSCL*VPVATCMNPWI Trigger: GATCCAGGGGTTCATACATGTAGCTACTGGGACCCAGAGACATGAGGATTGCTTGACTCCATGAGTTTGAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102766.10 ENSMUST00000109122.8 |
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| 3UTR CCA 72 bp | AGTTACCAGCAATGTGATGTGCTACCTGGTGTGAGATaGCTGTCTTCCCATGTCCCTACAGAGCATTTTGCA | + |
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Preference number: 3 (lower is better) Translates to: SYQQCDVLPGVR*LSSHVPTEHFA Trigger: TGCAAAATGCTCTGTAGGGACATGGGAAGACAGCCATCTCACACCAGGTAGCACATCACATTGCTGGTAACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109122.8 |
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| 3UTR TCA 72 bp | AAGGTCTTCAACTGTGAACTCTCCATTTCAGGTCACTaGTCTTTTGAGATGGAAACCTCCCTAGGTTTGCTG | + |
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Preference number: 3 (lower is better) Translates to: KVFNCELSISGH*SFEMETSLGLL Trigger: CAGCAAACCTAGGGAGGTTTCCATCTCAAAAGATCAGTGACCTGAAATGGAGAGTTCACAGTTGAAGACCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102766.10 ENSMUST00000109122.8 |
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| 3UTR-3UTR CAA 90 bp | CTGTCTGGCGAAAACATACCTTTCAAAGGTATCTTCTTATGCTATTTGAGAGACCTGAGGCTGGGTCACTaGAAACTGCAGAAACTCCTA | + |
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Preference number: 3 (lower is better) Translates to: LSGENIPFKGIFLCYLRDLRLGH*KLQKLL Trigger: TAGGAGTTTCTGCAGTTTCAAGTGACCCAGCCTCAG...GTCTCTCAAATAGCATAAGAAGATACCTTTGAAAGGTATGTTTTCGCCAGACAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109122.8 |
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| 3UTR-3UTR CAA 90 bp | CCAGAGGTGTGTCCTCTAGGTGATACTAAATCCAGTGATGTTAATAAAGATATTGTAGAGTTTAGTGTTTaGCTACTGAGAAGTCCAGCG | + |
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Preference number: 3 (lower is better) Translates to: PEVCPLGDTKSSDVNKDIVEFSV*LLRSPA Trigger: CGCTGGACTTCTCAGTAGCAAAACACTAAACTCTAC...AATATCTTTATTAACATCACTGGATTTAGTATCACCTAGAGGACACACCTCTGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109122.8 |
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| 3UTR-3UTR CAA 90 bp | AATAATAGCAAGATCTTCAGCATTTTCCTACAGGTGTTAGATTTGCCATGTCTTAATATCCACACACATTaGAAATCCGGTCAAGAAAAG | + |
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Preference number: 3 (lower is better) Translates to: NNSKIFSIFLQVLDLPCLNIHTH*KSGQEK Trigger: CTTTTCTTGACCGGATTTCAAATGTGTGTGGATATT...AAGACATGGCAAATCTAACACCTGTAGGAAAATGCTGAAGATCTTGCTATTATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109122.8 |
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| CDS-3UTR GCA 90 bp | CAATCCTCATGTCTCTGGGTCCCAGTAGCTACATGTATGAACCCCTGGATCTCACAGGGATCCTCTCCTTaGTGCAGCAGGGAGATCACT | + |
|
Preference number: 4 (lower is better) Translates to: QSSCLWVPVATCMNPWISQGSSP*CSREIT Trigger: AGTGATCTCCCTGCTGCAGCAAGGAGAGGATCCCTG...TGAGATCCAGGGGTTCATACATGTAGCTACTGGGACCCAGAGACATGAGGATTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102766.10 ENSMUST00000109122.8 |
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| CDS-3UTR TCA 90 bp | CAATCCTCATGTCTCTGGGTCCCAGTAGCTACATGTATGAACCCCTGGATCTCAGACTTAGTGGTTCTCTaGCTGCACTTCAGTCCGAGA | + |
|
Preference number: 4 (lower is better) Translates to: QSSCLWVPVATCMNPWISDLVVL*LHFSPR Trigger: TCTCGGACTGAAGTGCAGTCAGAGAACCACTAAGTC...TGAGATCCAGGGGTTCATACATGTAGCTACTGGGACCCAGAGACATGAGGATTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102766.10 ENSMUST00000109122.8 |
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| CDS-3UTR GCA 90 bp | GAGATGGAAACCTCCCTAGGTTTGCTGAGGCTGCTTCAAACTCATGGAGTCAAGGGATCCTCTCCTTGCTaGAGCAGGGAGATCACTTTT | + |
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Preference number: 4 (lower is better) Translates to: EMETSLGLLRLLQTHGVKGSSPC*SREITF Trigger: AAAAGTGATCTCCCTGCTGCAGCAAGGAGAGGATCC...CTTGACTCCATGAGTTTGAAGCAGCCTCAGCAAACCTAGGGAGGTTTCCATCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102766.10 ENSMUST00000109122.8 |
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| CDS-3UTR GCA 90 bp | GAGTTTAGTGTTTTGCTACTGAGAAGTCCAGCGCACTCCTCTGTGCACTTAGATCAGGGATCCTCTCCTTaGTGCAGCAGGGAGATCACT | + |
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Preference number: 4 (lower is better) Translates to: EFSVLLLRSPAHSSVHLDQGSSP*CSREIT Trigger: AGTGATCTCCCTGCTGCAGCAAGGAGAGGATCCCTG...ATCTAAGTGCACAGAGGAGTGCGCTGGACTTCTCAGTAGCAAAACACTAAACTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102766.10 ENSMUST00000109122.8 |
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| CDS-3UTR TCA 90 bp | CAATCCTCATGTCTCTGGGTCCCAGTAGCTACATGTATGAACCCCTGGATCTCAAATTCTCTGGCATCCTaGAAGGGAAGTAGATGCCTT | + |
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Preference number: 4 (lower is better) Translates to: QSSCLWVPVATCMNPWISNSLAS*KGSRCL Trigger: AAGGCATCTACTTCCCTTTCAGGATGCCAGAGAATT...TGAGATCCAGGGGTTCATACATGTAGCTACTGGGACCCAGAGACATGAGGATTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102766.10 ENSMUST00000109122.8 |
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| CDS-3UTR TCA 90 bp | GAGATGGAAACCTCCCTAGGTTTGCTGAGGCTGCTTCAAACTCATGGAGTCAAGGTCTTGTGTTTGAGTTaGCTTAGTGGTTCTCTGACT | + |
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Preference number: 4 (lower is better) Translates to: EMETSLGLLRLLQTHGVKVLCLS*LSGSLT Trigger: AGTCAGAGAACCACTAAGTCAACTCAAACACAAGAC...CTTGACTCCATGAGTTTGAAGCAGCCTCAGCAAACCTAGGGAGGTTTCCATCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102766.10 ENSMUST00000109122.8 |
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| CDS-3UTR TCA 90 bp | GAGATGGAAACCTCCCTAGGTTTGCTGAGGCTGCTTCAAACTCATGGAGTCAAGAATCAGTTCCCGAAATaGAGAGTCTTGTGTTTGAGT | + |
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Preference number: 4 (lower is better) Translates to: EMETSLGLLRLLQTHGVKNQFPK*RVLCLS Trigger: ACTCAAACACAAGACTCTTCATTTCGGGAACTGATT...CTTGACTCCATGAGTTTGAAGCAGCCTCAGCAAACCTAGGGAGGTTTCCATCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102766.10 ENSMUST00000109122.8 |
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| CDS-3UTR TCA 90 bp | CAAACTCATGGAGTCAAGCAATCCTCATGTCTCTGGGTCCCAGTAGCTACATGTGTGTATAAAAAGACCTaGCCTTCGGCCAAAGGATTT | + |
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Preference number: 4 (lower is better) Translates to: QTHGVKQSSCLWVPVATCVYKKT*PSAKGF Trigger: AAATCCTTTGGCCGAAGGTCAGGTCTTTTTATACAC...ACATGTAGCTACTGGGACCCAGAGACATGAGGATTGCTTGACTCCATGAGTTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000102766.10 ENSMUST00000109122.8 |
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| CDS-3UTR TCA 90 bp | GCAAGAGTAGGAGGAGCTTGTGGTTGTACAAGCATTAGGCTGATGCCTCAAGTTGTGTATAAAAAGACCTaGCCTTCGGCCAAAGGATTT | + |
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Preference number: 4 (lower is better) Translates to: ARVGGACGCTSIRLMPQVVYKKT*PSAKGF Trigger: AAATCCTTTGGCCGAAGGTCAGGTCTTTTTATACAC...AACTTGAGGCATCAGCCTAATGCTTGTACAACCACAAGCTCCTCCTACTCTTGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109122.8 |
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| CDS-3UTR GCA 90 bp | CCGGTCAAGAAAAGGAGATGTTCCAGAGACTTAAGAGGTAGATTACAGCTCATTGGATCCTCTCCTTGCTaGAGCAGGGAGATCACTTTT | + |
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Preference number: 4 (lower is better) Translates to: PVKKRRCSRDLRGRLQLIGSSPC*SREITF Trigger: AAAAGTGATCTCCCTGCTGCAGCAAGGAGAGGATCC...AATGAGCTGTAATCTACCTCTTAAGTCTCTGGAACATCTCCTTTTCTTGACCGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102766.10 ENSMUST00000109122.8 |
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| CDS-3UTR CCA 90 bp | GAGTTTAGTGTTTTGCTACTGAGAAGTCCAGCGCACTCCTCTGTGCACTTAGATCAGGGAGATCACTTTTaGTTTGGTAAACGGGAATCC | + |
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Preference number: 4 (lower is better) Translates to: EFSVLLLRSPAHSSVHLDQGDHF*FGKRES Trigger: GGATTCCCGTTTACCAAACCAAAAGTGATCTCCCTG...ATCTAAGTGCACAGAGGAGTGCGCTGGACTTCTCAGTAGCAAAACACTAAACTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000102766.10 ENSMUST00000109122.8 |
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| CDS-3UTR CCA 90 bp | CAATCCTCATGTCTCTGGGTCCCAGTAGCTACATGTATGAACCCCTGGATCTCAAGATGCCTTCCTCCCTaGGTTATATTTATAAGGGTT | + |
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Preference number: 4 (lower is better) Translates to: QSSCLWVPVATCMNPWISRCLPP*VIFIRV Trigger: AACCCTTATAAATATAACCCAGGGAGGAAGGCATCT...TGAGATCCAGGGGTTCATACATGTAGCTACTGGGACCCAGAGACATGAGGATTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102766.10 ENSMUST00000109122.8 |
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| 3UTR CAA 72 bp | TACACACACACACACATGAATATGCAATGTGTGCAATaGCCTGTGAGGACTAGAGACATCAGATCTGCCTGC | + |
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Preference number: 4 (lower is better) Translates to: YTHTHMNMQCVQ*PVRTRDIRSAC Trigger: GCAGGCAGATCTGATGTCTCTAGTCCTCACAGGCAATTGCACACATTGCATATTCATGTGTGTGTGTGTGTA 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109122.8 |
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| CDS-3UTR TCA 90 bp | ATTAGGAGAGCAAGAGTAGGAGGAGCTTGTGGTTGTACAAGCATTAGGCTGATGGTCTTGTGTTTGAGTTaGCTTAGTGGTTCTCTGACT | + |
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Preference number: 4 (lower is better) Translates to: IRRARVGGACGCTSIRLMVLCLS*LSGSLT Trigger: AGTCAGAGAACCACTAAGTCAACTCAAACACAAGAC...CATCAGCCTAATGCTTGTACAACCACAAGCTCCTCCTACTCTTGCTCTCCTAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109122.8 |
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| CDS-3UTR TCA 90 bp | CAATCCTCATGTCTCTGGGTCCCAGTAGCTACATGTATGAACCCCTGGATCTCATATGGAAAGATTTTCTaGCTTCATGTTCCAAGGTTC | + |
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Preference number: 4 (lower is better) Translates to: QSSCLWVPVATCMNPWISYGKIF*LHVPRF Trigger: GAACCTTGGAACATGAAGTCAGAAAATCTTTCCATA...TGAGATCCAGGGGTTCATACATGTAGCTACTGGGACCCAGAGACATGAGGATTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000102766.10 ENSMUST00000109122.8 |
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| CDS-3UTR CCA 90 bp | TCATGGAGTCAAGCAATCCTCATGTCTCTGGGTCCCAGTAGCTACATGTATGAAGGGTTTTCTCCAGCATaGACCTTCTGGTGTATAAAA | + |
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Preference number: 4 (lower is better) Translates to: SWSQAILMSLGPSSYMYEGFSPA*TFWCIK Trigger: TTTTATACACCAGAAGGTCCATGCTGGAGAAAACCC...TTCATACATGTAGCTACTGGGACCCAGAGACATGAGGATTGCTTGACTCCATGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102766.10 ENSMUST00000109122.8 |
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| CDS-3UTR CCA 90 bp | CAAACTCATGGAGTCAAGCAATCCTCATGTCTCTGGGTCCCAGTAGCTACATGTAGATGCCTTCCTCCCTaGGTTATATTTATAAGGGTT | + |
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Preference number: 4 (lower is better) Translates to: QTHGVKQSSCLWVPVATCRCLPP*VIFIRV Trigger: AACCCTTATAAATATAACCCAGGGAGGAAGGCATCT...ACATGTAGCTACTGGGACCCAGAGACATGAGGATTGCTTGACTCCATGAGTTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102766.10 ENSMUST00000109122.8 |
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| CDS-3UTR TCA 90 bp | CTGTCTGGCGAAAACATACCTTTCAAAGGTATCTTCTTATGCTATTTGAGAGACGACTTAGTGGTTCTCTaGCTGCACTTCAGTCCGAGA | + |
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Preference number: 4 (lower is better) Translates to: LSGENIPFKGIFLCYLRDDLVVL*LHFSPR Trigger: TCTCGGACTGAAGTGCAGTCAGAGAACCACTAAGTC...GTCTCTCAAATAGCATAAGAAGATACCTTTGAAAGGTATGTTTTCGCCAGACAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109122.8 |
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| CDS-3UTR TCA 90 bp | TCATGGAGTCAAGCAATCCTCATGTCTCTGGGTCCCAGTAGCTACATGTATGAATATGGAAAGATTTTCTaGCTTCATGTTCCAAGGTTC | + |
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Preference number: 4 (lower is better) Translates to: SWSQAILMSLGPSSYMYEYGKIF*LHVPRF Trigger: GAACCTTGGAACATGAAGTCAGAAAATCTTTCCATA...TTCATACATGTAGCTACTGGGACCCAGAGACATGAGGATTGCTTGACTCCATGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102766.10 ENSMUST00000109122.8 |
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| CDS-3UTR TCA 90 bp | CCGGTCAAGAAAAGGAGATGTTCCAGAGACTTAAGAGGTAGATTACAGCTCATTATAAGAGCTGAACTTTaGCCAAATGACATCCCGCAT | + |
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Preference number: 4 (lower is better) Translates to: PVKKRRCSRDLRGRLQLIIRAEL*PNDIPH Trigger: ATGCGGGATGTCATTTGGTCAAAGTTCAGCTCTTAT...AATGAGCTGTAATCTACCTCTTAAGTCTCTGGAACATCTCCTTTTCTTGACCGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102766.10 ENSMUST00000109122.8 |
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| CDS-3UTR TCA 90 bp | ACTGCTGCAGAGAGAAAAGCACCATTTTACAAATACCTGAAGTCAAGGTCTTCAGAAGAGTCTTGTGTTTaGGTTGACTTAGTGGTTCTC | + |
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Preference number: 4 (lower is better) Translates to: TAAERKAPFYKYLKSRSSEESCV*VDLVVL Trigger: GAGAACCACTAAGTCAACTCAAACACAAGACTCTTC...TGAAGACCTTGACTTCAGGTATTTGTAAAATGGTGCTTTTCTCTCTGCAGCAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000102766.10 ENSMUST00000109122.8 |
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| CDS-3UTR TCA 90 bp | ACTGCTGCAGAGAGAAAAGCACCATTTTACAAATACCTGAAGTCAAGGTCTTCAATGGTTGGTGAGGGATaGCCTATGGTTGAAAAGTTT | + |
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Preference number: 4 (lower is better) Translates to: TAAERKAPFYKYLKSRSSMVGEG*PMVEKF Trigger: AAACTTTTCAACCATAGGTCATCCCTCACCAACCAT...TGAAGACCTTGACTTCAGGTATTTGTAAAATGGTGCTTTTCTCTCTGCAGCAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000102766.10 ENSMUST00000109122.8 |
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| CDS-3UTR GCA 90 bp | TTGCTACTGAGAAGTCCAGCGCACTCCTCTGTGCACTTAGATGCCTATAATTACTTGGGCTCAGTTCATTaGTTTTATAGCTTCTTTCTA | + |
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Preference number: 4 (lower is better) Translates to: LLLRSPAHSSVHLDAYNYLGSVH*FYSFFL Trigger: TAGAAAGAAGCTATAAAAGCAATGAACTGAGCCCAA...GTAATTATAGGCATCTAAGTGCACAGAGGAGTGCGCTGGACTTCTCAGTAGCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102766.10 ENSMUST00000109122.8 |
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| CDS-3UTR TCA 90 bp | CCAGAGGTGTGTCCTCTAGGTGATACTAAATCCAGTGATGTTAATAAAGATATTAATTCTCTGGCATCCTaGAAGGGAAGTAGATGCCTT | + |
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Preference number: 4 (lower is better) Translates to: PEVCPLGDTKSSDVNKDINSLAS*KGSRCL Trigger: AAGGCATCTACTTCCCTTTCAGGATGCCAGAGAATT...AATATCTTTATTAACATCACTGGATTTAGTATCACCTAGAGGACACACCTCTGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109122.8 |
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| CDS-3UTR TCA 90 bp | CTGTCTGGCGAAAACATACCTTTCAAAGGTATCTTCTTATGCTATTTGAGAGACATAAGAGCTGAACTTTaGCCAAATGACATCCCGCAT | + |
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Preference number: 4 (lower is better) Translates to: LSGENIPFKGIFLCYLRDIRAEL*PNDIPH Trigger: ATGCGGGATGTCATTTGGTCAAAGTTCAGCTCTTAT...GTCTCTCAAATAGCATAAGAAGATACCTTTGAAAGGTATGTTTTCGCCAGACAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109122.8 |
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| CDS-3UTR CCA 90 bp | TTAATAACTAGGTGGACTATCTCCAATTCACAATACCAGGAGATGAGCTTTTTACAGGGAGATCACTTTTaGTTTGGTAAACGGGAATCC | + |
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Preference number: 4 (lower is better) Translates to: LITRWTISNSQYQEMSFLQGDHF*FGKRES Trigger: GGATTCCCGTTTACCAAACCAAAAGTGATCTCCCTG...TAAAAAGCTCATCTCCTGGTATTGTGAATTGGAGATAGTCCACCTAGTTATTAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109122.8 |
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| CDS-3UTR CCA 90 bp | CCGGTCAAGAAAAGGAGATGTTCCAGAGACTTAAGAGGTAGATTACAGCTCATTGATTTCTCTACAGTGTaGGTTCTTAGATGTTTATAC | + |
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Preference number: 4 (lower is better) Translates to: PVKKRRCSRDLRGRLQLIDFSTV*VLRCLY Trigger: GTATAAACATCTAAGAACCCACACTGTAGAGAAATC...AATGAGCTGTAATCTACCTCTTAAGTCTCTGGAACATCTCCTTTTCTTGACCGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102766.10 ENSMUST00000109122.8 |
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| CDS-3UTR TCA 90 bp | CATACATACATACATACATACAATGTCACTACAGTTACAATTAGCACAGGTCTGATGGTTGGTGAGGGATaGCCTATGGTTGAAAAGTTT | + |
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Preference number: 4 (lower is better) Translates to: HTYIHTYNVTTVTISTGLMVGEG*PMVEKF Trigger: AAACTTTTCAACCATAGGTCATCCCTCACCAACCAT...CAGACCTGTGCTAATTGTAACTGTAGTGACATTGTATGTATGTATGTATGTATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109122.8 |
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| CDS-3UTR TCA 90 bp | TTAATAACTAGGTGGACTATCTCCAATTCACAATACCAGGAGATGAGCTTTTTAAATCAGTTCCCGAAATaGAGAGTCTTGTGTTTGAGT | + |
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Preference number: 4 (lower is better) Translates to: LITRWTISNSQYQEMSFLNQFPK*RVLCLS Trigger: ACTCAAACACAAGACTCTTCATTTCGGGAACTGATT...TAAAAAGCTCATCTCCTGGTATTGTGAATTGGAGATAGTCCACCTAGTTATTAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109122.8 |
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| CDS-3UTR CCA 90 bp | CCAGAGGTGTGTCCTCTAGGTGATACTAAATCCAGTGATGTTAATAAAGATATTGATTTCTCTACAGTGTaGGTTCTTAGATGTTTATAC | + |
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Preference number: 4 (lower is better) Translates to: PEVCPLGDTKSSDVNKDIDFSTV*VLRCLY Trigger: GTATAAACATCTAAGAACCCACACTGTAGAGAAATC...AATATCTTTATTAACATCACTGGATTTAGTATCACCTAGAGGACACACCTCTGG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109122.8 |
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| CDS-3UTR CAA 90 bp | CAAACTCATGGAGTCAAGCAATCCTCATGTCTCTGGGTCCCAGTAGCTACATGTCCAGGGATCCTCTCCTaGCTGCAGCAGGGAGATCAC | + |
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Preference number: 5 (lower is better) Translates to: QTHGVKQSSCLWVPVATCPGILS*LQQGDH Trigger: GTGATCTCCCTGCTGCAGCAAGGAGAGGATCCCTGG...ACATGTAGCTACTGGGACCCAGAGACATGAGGATTGCTTGACTCCATGAGTTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102766.10 ENSMUST00000109122.8 |
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| CDS-3UTR CAA 90 bp | TTGCTACTGAGAAGTCCAGCGCACTCCTCTGTGCACTTAGATGCCTATAATTACCCAGGGATCCTCTCCTaGCTGCAGCAGGGAGATCAC | + |
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Preference number: 5 (lower is better) Translates to: LLLRSPAHSSVHLDAYNYPGILS*LQQGDH Trigger: GTGATCTCCCTGCTGCAGCAAGGAGAGGATCCCTGG...GTAATTATAGGCATCTAAGTGCACAGAGGAGTGCGCTGGACTTCTCAGTAGCAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102766.10 ENSMUST00000109122.8 |
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| CDS-3UTR CAA 90 bp | CAAACTCATGGAGTCAAGCAATCCTCATGTCTCTGGGTCCCAGTAGCTACATGTGAGATCACTTTTGGTTaGGTAAACGGGAATCCCAGC | + |
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Preference number: 5 (lower is better) Translates to: QTHGVKQSSCLWVPVATCEITFG*VNGNPS Trigger: GCTGGGATTCCCGTTTACCAAACCAAAAGTGATCTC...ACATGTAGCTACTGGGACCCAGAGACATGAGGATTGCTTGACTCCATGAGTTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102766.10 ENSMUST00000109122.8 |
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| CDS-3UTR CAA 90 bp | TCATGGAGTCAAGCAATCCTCATGTCTCTGGGTCCCAGTAGCTACATGTATGAAGAGATCACTTTTGGTTaGGTAAACGGGAATCCCAGC | + |
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Preference number: 5 (lower is better) Translates to: SWSQAILMSLGPSSYMYEEITFG*VNGNPS Trigger: GCTGGGATTCCCGTTTACCAAACCAAAAGTGATCTC...TTCATACATGTAGCTACTGGGACCCAGAGACATGAGGATTGCTTGACTCCATGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102766.10 ENSMUST00000109122.8 |
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| CDS-3UTR CAA 90 bp | TCATGGAGTCAAGCAATCCTCATGTCTCTGGGTCCCAGTAGCTACATGTATGAACACTTTTCCTCTAATTaGCCTTCATGTATGGAAAGA | + |
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Preference number: 5 (lower is better) Translates to: SWSQAILMSLGPSSYMYEHFSSN*PSCMER Trigger: TCTTTCCATACATGAAGGCAAATTAGAGGAAAAGTG...TTCATACATGTAGCTACTGGGACCCAGAGACATGAGGATTGCTTGACTCCATGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102766.10 ENSMUST00000109122.8 |
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| CDS CAA 90 bp | CTTCTTTCTATAGTCGAGGCATTCACATCCCACTTTTCCTCTAATTaGCCTTCATGTATGGAAAGATTTTCTGACTTCATGTTCCAAGGT | + |
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Preference number: 6 (lower is better) Translates to: LLSIVEAFTSHFSSN*PSCMERFSDFMFQG Trigger: ACCTTGGAACATGAAGTCAGAAAATCTTTCCATACATGAAGGCAAATTAGAGGAAAAGTGGGATGTGAATGCCTCGACTATAGAAAGAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000020628.6 ENSMUST00000102766.10 ENSMUST00000109119.8 ENSMUST00000109122.8 |
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