Pregenerated sensors for ZFP35 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000063281Ensembl transcript IDs: ENSMUST00000074941.8
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCCCGTTCCTTCCACCAAGGTCAACAGAAGATTCAGCCCTTGACTTaGGCCTCAAGCACACCTCTTCTCATTGTTCCATGCATCAGCAAG | + |
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Preference number: 1 (lower is better) Translates to: PRSFHQGQQKIQPLT*ASSTPLLIVPCISK Trigger: CTTGCTGATGCATGGAACAATGAGAAGAGGTGTGCTTGAGGCTCAAGTCAAGGGCTGAATCTTCTGTTGACCTTGGTGGAAGGAACGGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| 3UTR GCA 90 bp | TCATTGTTCCATGCATCAGCAAGCCGGGAACTCTGCCAACTGACCTaGTTTGATTCCGCCTGGGAGGCACTCTTCCTTTTTCTCGTTTCA | + |
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Preference number: 1 (lower is better) Translates to: SLFHASASRELCQLT*FDSAWEALFLFLVS Trigger: TGAAACGAGAAAAAGGAAGAGTGCCTCCCAGGCGGAATCAAAGCAGGTCAGTTGGCAGAGTTCCCGGCTTGCTGATGCATGGAACAATGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| 3UTR TCA 90 bp | GTAAGCCCCGTTCCTTCCACCAAGGTCAACAGAAGATTCAGCCCTTaGCTTGAGCCTCAAGCACACCTCTTCTCATTGTTCCATGCATCA | + |
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Preference number: 1 (lower is better) Translates to: VSPVPSTKVNRRFSP*LEPQAHLFSLFHAS Trigger: TGATGCATGGAACAATGAGAAGAGGTGTGCTTGAGGCTCAAGTCAAGGGCTGAATCTTCTGTTGACCTTGGTGGAAGGAACGGGGCTTAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| 3UTR TCA 90 bp | CTTTTTCTCGTTTCAGAGAGGTGCAAACGGCTCCTGCAGATCCTCTaGTATCCAGTAAGATTGGTCACAGTGCTGAAGGCTTCACACAGG | + |
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Preference number: 1 (lower is better) Translates to: LFLVSERCKRLLQIL*YPVRLVTVLKASHR Trigger: CCTGTGTGAAGCCTTCAGCACTGTGACCAATCTTACTGGATATCAGAGGATCTGCAGGAGCCGTTTGCACCTCTCTGAAACGAGAAAAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| 3UTR GCA 90 bp | CAGTACCATGGGGAGCAAAGCCACAAGCCAGTATTAACAATTTGCTaGAATATACACACAAGACATCTGTTCCCATCCAGTAAGCCCCGT | + |
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Preference number: 1 (lower is better) Translates to: QYHGEQSHKPVLTIC*NIHTRHLFPSSKPR Trigger: ACGGGGCTTACTGGATGGGAACAGATGTCTTGTGTGTATATTGCAGCAAATTGTTAATACTGGCTTGTGGCTTTGCTCCCCATGGTACTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| 3UTR GCA 90 bp | CTACAGTACCATGGGGAGCAAAGCCACAAGCCAGTATTAACAATTTaGTGCAATATACACACAAGACATCTGTTCCCATCCAGTAAGCCC | + |
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Preference number: 1 (lower is better) Translates to: LQYHGEQSHKPVLTI*CNIHTRHLFPSSKP Trigger: GGGCTTACTGGATGGGAACAGATGTCTTGTGTGTATATTGCAGCAAATTGTTAATACTGGCTTGTGGCTTTGCTCCCCATGGTACTGTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| 3UTR GCA 90 bp | CCACTTGCCTTTGCCTCCCAAGTGCTGAGATTAAAGGCATGTGCCTaGCTAGAATGCATTTACTTAAAATCACCAAGATCAGATTTGTTA | + |
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Preference number: 1 (lower is better) Translates to: PLAFASQVLRLKACA*LECIYLKSPRSDLL Trigger: TAACAAATCTGATCTTGGTGATTTTAAGTAAATGCATTCTAGGCAGGCACATGCCTTTAATCTCAGCACTTGGGAGGCAAAGGCAAGTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| 3UTR GCA 90 bp | AGATCCACTTGCCTTTGCCTCCCAAGTGCTGAGATTAAAGGCATGTaGCTGCCTAGAATGCATTTACTTAAAATCACCAAGATCAGATTT | + |
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Preference number: 1 (lower is better) Translates to: RSTCLCLPSAEIKGM*LPRMHLLKITKIRF Trigger: AAATCTGATCTTGGTGATTTTAAGTAAATGCATTCTAGGCAGGCACATGCCTTTAATCTCAGCACTTGGGAGGCAAAGGCAAGTGGATCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| 3UTR GCA 90 bp | TTTGCCTCCCAAGTGCTGAGATTAAAGGCATGTGCCTGCCTAGAATaGATTTACTTAAAATCACCAAGATCAGATTTGTTAAAACATCTG | + |
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Preference number: 1 (lower is better) Translates to: FASQVLRLKACACLE*IYLKSPRSDLLKHL Trigger: CAGATGTTTTAACAAATCTGATCTTGGTGATTTTAAGTAAATGCATTCTAGGCAGGCACATGCCTTTAATCTCAGCACTTGGGAGGCAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| 3UTR CAA 90 bp | GCCCCGTTCCTTCCACCAAGGTCAACAGAAGATTCAGCCCTTGACTaGAGCCTCAAGCACACCTCTTCTCATTGTTCCATGCATCAGCAA | + |
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Preference number: 2 (lower is better) Translates to: APFLPPRSTEDSALD*SLKHTSSHCSMHQQ Trigger: TTGCTGATGCATGGAACAATGAGAAGAGGTGTGCTTGAGGCTCAAGTCAAGGGCTGAATCTTCTGTTGACCTTGGTGGAAGGAACGGGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| 3UTR-3UTR TCA 90 bp | GATGGCCTCAAACATAGAGATCCACTTGCCTTTGCCTCCCAAGTGCTGAGATTAGGGAACTCTGCCAACTaGCCTGCTTTGATTCCGCCT | + |
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Preference number: 2 (lower is better) Translates to: DGLKHRDPLAFASQVLRLGNSAN*PALIPP Trigger: AGGCGGAATCAAAGCAGGTCAGTTGGCAGAGTTCCC...TAATCTCAGCACTTGGGAGGCAAAGGCAAGTGGATCTCTATGTTTGAGGCCATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| 3UTR-3UTR TCA 90 bp | GAGGATGATTATAGGAAAGACAGAAAAACGATGCAAGAGACAGACATGGGAGGGATTCAGCCCTTGACTTaGGCCTCAAGCACACCTCTT | + |
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Preference number: 2 (lower is better) Translates to: EDDYRKDRKTMQETDMGGIQPLT*ASSTPL Trigger: AAGAGGTGTGCTTGAGGCTCAAGTCAAGGGCTGAAT...CCCTCCCATGTCTGTCTCTTGCATCGTTTTTCTGTCTTTCCTATAATCATCCTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| 3UTR-3UTR GCA 90 bp | TGCTTCCCTGAACACGAGGTCAGAAGCTTCTCTTCTATGTGGATCCTTGAACTAAAGACAGAAAAACGATaGAAGAGACAGACATGGGAG | + |
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Preference number: 2 (lower is better) Translates to: CFPEHEVRSFSSMWILELKTEKR*KRQTWE Trigger: CTCCCATGTCTGTCTCTTGCATCGTTTTTCTGTCTT...TAGTTCAAGGATCCACATAGAAGAGAAGCTTCTGACCTCGTGTTCAGGGAAGCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| 3UTR TCA 72 bp | ACACGAGGTCAGAAGCTTCTCTTCTATGTGGATCCTTaGACTAGTCCGGCCGGCGTGAAGTCGAACAGCCCC | + |
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Preference number: 3 (lower is better) Translates to: TRGQKLLFYVDP*TSPAGVKSNSP Trigger: GGGGCTGTTCGACTTCACGCCGGCCGGACTAGTTCAAGGATCCACATAGAAGAGAAGCTTCTGACCTCGTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| 3UTR GCA 72 bp | CATGCATCAGCAAGCCGGGAACTCTGCCAACTGACCTaGTTTGATTCCGCCTGGGAGGCACTCTTCCTTTTT | + |
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Preference number: 3 (lower is better) Translates to: HASASRELCQLT*FDSAWEALFLF Trigger: AAAAAGGAAGAGTGCCTCCCAGGCGGAATCAAAGCAGGTCAGTTGGCAGAGTTCCCGGCTTGCTGATGCATG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| 3UTR GCA 72 bp | TTCTCATTGTTCCATGCATCAGCAAGCCGGGAACTCTaGCAACTGACCTGCTTTGATTCCGCCTGGGAGGCA | + |
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Preference number: 3 (lower is better) Translates to: FSLFHASASREL*QLTCFDSAWEA Trigger: TGCCTCCCAGGCGGAATCAAAGCAGGTCAGTTGGCAGAGTTCCCGGCTTGCTGATGCATGGAACAATGAGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| 3UTR TCA 72 bp | GTTCCTTCCACCAAGGTCAACAGAAGATTCAGCCCTTaGCTTGAGCCTCAAGCACACCTCTTCTCATTGTTC | + |
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Preference number: 3 (lower is better) Translates to: VPSTKVNRRFSP*LEPQAHLFSLF Trigger: GAACAATGAGAAGAGGTGTGCTTGAGGCTCAAGTCAAGGGCTGAATCTTCTGTTGACCTTGGTGGAAGGAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| 3UTR GCA 72 bp | GGGGAGCAAAGCCACAAGCCAGTATTAACAATTTGCTaGAATATACACACAAGACATCTGTTCCCATCCAGT | + |
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Preference number: 3 (lower is better) Translates to: GEQSHKPVLTIC*NIHTRHLFPSS Trigger: ACTGGATGGGAACAGATGTCTTGTGTGTATATTGCAGCAAATTGTTAATACTGGCTTGTGGCTTTGCTCCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| 3UTR GCA 72 bp | CATGGGGAGCAAAGCCACAAGCCAGTATTAACAATTTaGTGCAATATACACACAAGACATCTGTTCCCATCC | + |
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Preference number: 3 (lower is better) Translates to: HGEQSHKPVLTI*CNIHTRHLFPS Trigger: GGATGGGAACAGATGTCTTGTGTGTATATTGCAGCAAATTGTTAATACTGGCTTGTGGCTTTGCTCCCCATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| 3UTR GCA 72 bp | TGCCTTTGCCTCCCAAGTGCTGAGATTAAAGGCATGTaGCTGCCTAGAATGCATTTACTTAAAATCACCAAG | + |
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Preference number: 3 (lower is better) Translates to: CLCLPSAEIKGM*LPRMHLLKITK Trigger: CTTGGTGATTTTAAGTAAATGCATTCTAGGCAGGCACATGCCTTTAATCTCAGCACTTGGGAGGCAAAGGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| 3UTR TCA 72 bp | TCACCAAGATCAGATTTGTTAAAACATCTGCTTCCCTaGACACGAGGTCAGAAGCTTCTCTTCTATGTGGAT | + |
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Preference number: 3 (lower is better) Translates to: SPRSDLLKHLLP*TRGQKLLFYVD Trigger: ATCCACATAGAAGAGAAGCTTCTGACCTCGTGTTCAGGGAAGCAGATGTTTTAACAAATCTGATCTTGGTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| 3UTR GCA 72 bp | TTTGCCTCCCAAGTGCTGAGATTAAAGGCATGTGCCTaGCTAGAATGCATTTACTTAAAATCACCAAGATCA | + |
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Preference number: 3 (lower is better) Translates to: FASQVLRLKACA*LECIYLKSPRS Trigger: TGATCTTGGTGATTTTAAGTAAATGCATTCTAGGCAGGCACATGCCTTTAATCTCAGCACTTGGGAGGCAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| 3UTR GCA 72 bp | CAAGTGCTGAGATTAAAGGCATGTGCCTGCCTAGAATaGATTTACTTAAAATCACCAAGATCAGATTTGTTA | + |
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Preference number: 3 (lower is better) Translates to: QVLRLKACACLE*IYLKSPRSDLL Trigger: TAACAAATCTGATCTTGGTGATTTTAAGTAAATGCATTCTAGGCAGGCACATGCCTTTAATCTCAGCACTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| CDS-3UTR TCA 90 bp | GAGACAGACATGGGAGGGCTGCAGGTCATTACCACGCCAGCAGTGAGTGTATTTGATCAGAGCGCTGACTaGAGCTTTTGCCACACTGAG | + |
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Preference number: 4 (lower is better) Translates to: ETDMGGLQVITTPAVSVFDQSAD*SFCHTE Trigger: CTCAGTGTGGCAAAAGCTTCAGTCAGCGCTCTGATC...AAATACACTCACTGCTGGCGTGGTAATGACCTGCAGCCCTCCCATGTCTGTCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| CDS-3UTR CCA 90 bp | CCCACATTTATGCAGTCTTCCTCCTTAGAATGCCTCTCTTCCTCTCCCCTCCCCTTGCCTCTGGAGTCATaGGGAACATCCTCCTCAAGG | + |
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Preference number: 4 (lower is better) Translates to: PTFMQSSSLECLSSSPLPLPLES*GTSSSR Trigger: CCTTGAGGAGGATGTTCCCCATGACTCCAGAGGCAA...GGGGAGGGGAGAGGAAGAGAGGCATTCTAAGGAGGAAGACTGCATAAATGTGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| CDS-3UTR TCA 90 bp | ACATTTATGCAGTCTTCCTCCTTAGAATGCCTCTCTTCCTCTCCCCTCCCCCGACCAGTGTGGATTCTCTaGTGGAGAATACGATCAGAG | + |
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Preference number: 4 (lower is better) Translates to: TFMQSSSLECLSSSPLPRPVWIL*WRIRSE Trigger: CTCTGATCGTATTCTCCATCAGAGAATCCACACTGG...TCGGGGGAGGGGAGAGGAAGAGAGGCATTCTAAGGAGGAAGACTGCATAAATGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| CDS-3UTR TCA 90 bp | CCCACATTTATGCAGTCTTCCTCCTTAGAATGCCTCTCTTCCTCTCCCCTCCCCATCAGGTCTGACTTTTaGCTGAAACTTCTAGGGCAC | + |
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Preference number: 4 (lower is better) Translates to: PTFMQSSSLECLSSSPLPIRSDF*LKLLGH Trigger: GTGCCCTAGAAGTTTCAGTCAAAAGTCAGACCTGAT...GGGGAGGGGAGAGGAAGAGAGGCATTCTAAGGAGGAAGACTGCATAAATGTGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| CDS-3UTR CCA 90 bp | ACATTTATGCAGTCTTCCTCCTTAGAATGCCTCTCTTCCTCTCCCCTCCCCCGAGGAATTCTTTGCCTCTaGAGTCATGGGGAACATCCT | + |
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Preference number: 4 (lower is better) Translates to: TFMQSSSLECLSSSPLPRGILCL*SHGEHP Trigger: AGGATGTTCCCCATGACTCCAGAGGCAAAGAATTCC...TCGGGGGAGGGGAGAGGAAGAGAGGCATTCTAAGGAGGAAGACTGCATAAATGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| 3UTR CAA 72 bp | CTTCCACCAAGGTCAACAGAAGATTCAGCCCTTGACTaGAGCCTCAAGCACACCTCTTCTCATTGTTCCATG | + |
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Preference number: 4 (lower is better) Translates to: LPPRSTEDSALD*SLKHTSSHCSM Trigger: CATGGAACAATGAGAAGAGGTGTGCTTGAGGCTCAAGTCAAGGGCTGAATCTTCTGTTGACCTTGGTGGAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| CDS-3UTR TCA 90 bp | ACAGTACCATGGGGAGCAAAGCCACAAGCCAGTATTAACAATTTGCTGCAATATATGCAGAACCAGGGCTaGGCTCATCCGAAAGGCCTT | + |
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Preference number: 4 (lower is better) Translates to: TVPWGAKPQASINNLLQYMQNQG*AHPKGL Trigger: AAGGCCTTTCGGATGAGCTCAGCCCTGGTTCTGCAT...ATATTGCAGCAAATTGTTAATACTGGCTTGTGGCTTTGCTCCCCATGGTACTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| CDS-3UTR TCA 90 bp | GAGACAGACATGGGAGGGCTGCAGGTCATTACCACGCCAGCAGTGAGTGTATTTGATCAGAGCTCTGACTaGAATGTTTGTAACAATGGT | + |
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Preference number: 4 (lower is better) Translates to: ETDMGGLQVITTPAVSVFDQSSD*NVCNNG Trigger: ACCATTGTTACAAACATTTCAGTCAGAGCTCTGATC...AAATACACTCACTGCTGGCGTGGTAATGACCTGCAGCCCTCCCATGTCTGTCTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| CDS-3UTR TCA 90 bp | ACATTTATGCAGTCTTCCTCCTTAGAATGCCTCTCTTCCTCTCCCCTCCCCCGAATGCAGAATAAGGACTaGGCTCTGGTTAAAAGCCTT | + |
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Preference number: 4 (lower is better) Translates to: TFMQSSSLECLSSSPLPRMQNKD*ALVKSL Trigger: AAGGCTTTTAACCAGAGCTCAGTCCTTATTCTGCAT...TCGGGGGAGGGGAGAGGAAGAGAGGCATTCTAAGGAGGAAGACTGCATAAATGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| CDS-3UTR TCA 90 bp | CATCTGTTCCCATCCAGTAAGCCCCGTTCCTTCCACCAAGGTCAACAGAAGATTGTGAGGTCTGAACTTTaGCTGAAACTCTTACTGCAC | + |
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Preference number: 4 (lower is better) Translates to: HLFPSSKPRSFHQGQQKIVRSEL*LKLLLH Trigger: GTGCAGTAAGAGTTTCAGTCAAAGTTCAGACCTCAC...AATCTTCTGTTGACCTTGGTGGAAGGAACGGGGCTTACTGGATGGGAACAGATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| CDS-3UTR TCA 90 bp | GATGGCCTCAAACATAGAGATCCACTTGCCTTTGCCTCCCAAGTGCTGAGATTAATGAAGGGTAAAGGCTaGGCACTGACTGAAAGCCTT | + |
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Preference number: 4 (lower is better) Translates to: DGLKHRDPLAFASQVLRLMKGKG*ALTESL Trigger: AAGGCTTTCAGTCAGTGCTCAGCCTTTACCCTTCAT...TAATCTCAGCACTTGGGAGGCAAAGGCAAGTGGATCTCTATGTTTGAGGCCATC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| CDS-3UTR GCA 90 bp | TACACACAAGACATCTGTTCCCATCCAGTAAGCCCCGTTCCTTCCACCAAGGTCTCTTACTGCACAGATTaGACGTGTATGGTTTTTCTC | + |
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Preference number: 4 (lower is better) Translates to: YTQDICSHPVSPVPSTKVSYCTD*TCMVFL Trigger: GAGAAAAACCATACACGTGCAATCTGTGCAGTAAGA...GACCTTGGTGGAAGGAACGGGGCTTACTGGATGGGAACAGATGTCTTGTGTGTA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| CDS-3UTR TCA 90 bp | GATGGCCTCAAACATAGAGATCCACTTGCCTTTGCCTCCCAAGTGCTGAGATTAATGTTTAACCATGCCTaGGTGCTGGCTAAAGCTTTT | + |
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Preference number: 4 (lower is better) Translates to: DGLKHRDPLAFASQVLRLMFNHA*VLAKAF Trigger: AAAAGCTTTAGCCAGCACTCAGGCATGGTTAAACAT...TAATCTCAGCACTTGGGAGGCAAAGGCAAGTGGATCTCTATGTTTGAGGCCATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| CDS-3UTR CCA 90 bp | GAGGATGATTATAGGAAAGACAGAAAAACGATGCAAGAGACAGACATGGGAGGGTTCCTCCTCTGTAGCTaGCTCTCCAATCTTGATCTT | + |
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Preference number: 4 (lower is better) Translates to: EDDYRKDRKTMQETDMGGFLLCS*LSNLDL Trigger: AAGATCAAGATTGGAGAGCCAGCTACAGAGGAGGAA...CCCTCCCATGTCTGTCTCTTGCATCGTTTTTCTGTCTTTCCTATAATCATCCTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| 3UTR CAA 72 bp | CCATGGGGAGCAAAGCCACAAGCCAGTATTAACAATTaGCTGCAATATACACACAAGACATCTGTTCCCATC | + |
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Preference number: 4 (lower is better) Translates to: PWGAKPQASINN*LQYTHKTSVPI Trigger: GATGGGAACAGATGTCTTGTGTGTATATTGCAGCAAATTGTTAATACTGGCTTGTGGCTTTGCTCCCCATGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| CDS-3UTR CCA 90 bp | GAGGATGATTATAGGAAAGACAGAAAAACGATGCAAGAGACAGACATGGGAGGGACCATGCCTGAGTGCTaGCTAAAGCTTTTACTACAA | + |
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Preference number: 4 (lower is better) Translates to: EDDYRKDRKTMQETDMGGTMPEC*LKLLLQ Trigger: TTGTAGTAAAAGCTTTAGCCAGCACTCAGGCATGGT...CCCTCCCATGTCTGTCTCTTGCATCGTTTTTCTGTCTTTCCTATAATCATCCTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| CDS-3UTR GCA 90 bp | ACAGTACCATGGGGAGCAAAGCCACAAGCCAGTATTAACAATTTGCTGCAATATTTAACCATGCCTGAGTaGTGGCTAAAGCTTTTACTA | + |
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Preference number: 4 (lower is better) Translates to: TVPWGAKPQASINNLLQYLTMPE*WLKLLL Trigger: TAGTAAAAGCTTTAGCCAGCACTCAGGCATGGTTAA...ATATTGCAGCAAATTGTTAATACTGGCTTGTGGCTTTGCTCCCCATGGTACTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| CDS-3UTR TCA 90 bp | GATTCTGTTCTAGTATGCTCTTTGCATTTGTACACTACAGGCTTTCCCACATTTAAACTTTTGTTACACTaGGCACACGGATATGGCTTC | + |
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Preference number: 4 (lower is better) Translates to: DSVLVCSLHLYTTGFPTFKLLLH*AHGYGF Trigger: GAAGCCATATCCGTGTGCTCAGTGTAACAAAAGTTT...AAATGTGGGAAAGCCTGTAGTGTACAAATGCAAAGAGCATACTAGAACAGAATC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| CDS-3UTR CAA 90 bp | CCCACATTTATGCAGTCTTCCTCCTTAGAATGCCTCTCTTCCTCTCCCCTCCCCGCTGGCTCTCCAATCTaGATCTTAGTCTCACCATCT | + |
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Preference number: 5 (lower is better) Translates to: PTFMQSSSLECLSSSPLPAGSPI*ILVSPS Trigger: AGATGGTGAGACTAAGATCAAGATTGGAGAGCCAGC...GGGGAGGGGAGAGGAAGAGAGGCATTCTAAGGAGGAAGACTGCATAAATGTGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| CDS GCA 90 bp | GGAATTCTTTGCCTCTGGAGTCATGGGGAACATCCTCCTCAAGGCTaGCGGACTCTTCAGTCACTGTTCCAATCTTTCCTGTCATTTCCT | + |
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Preference number: 5 (lower is better) Translates to: GILCLWSHGEHPPQG*RTLQSLFQSFLSFP Trigger: AGGAAATGACAGGAAAGATTGGAACAGTGACTGAAGAGTCCGGCAGCCTTGAGGAGGATGTTCCCCATGACTCCAGAGGCAAAGAATTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| CDS CCA 90 bp | TCTGATCGTTCAATTCTTCTCCAAATTCACGGAATTCTTTGCCTCTaGAGTCATGGGGAACATCCTCCTCAAGGCTGCCGGACTCTTCAG | + |
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Preference number: 5 (lower is better) Translates to: SDRSILLQIHGILCL*SHGEHPPQGCRTLQ Trigger: CTGAAGAGTCCGGCAGCCTTGAGGAGGATGTTCCCCATGACTCCAGAGGCAAAGAATTCCGTGAATTTGGAGAAGAATTGAACGATCAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| CDS CCA 90 bp | TTCAATTCTTCTCCAAATTCACGGAATTCTTTGCCTCTGGAGTCATaGGGAACATCCTCCTCAAGGCTGCCGGACTCTTCAGTCACTGTT | + |
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Preference number: 5 (lower is better) Translates to: FNSSPNSRNSLPLES*GTSSSRLPDSSVTV Trigger: AACAGTGACTGAAGAGTCCGGCAGCCTTGAGGAGGATGTTCCCCATGACTCCAGAGGCAAAGAATTCCGTGAATTTGGAGAAGAATTGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| CDS TCA 90 bp | CTCCTCTGTAGCTGGCTCTCCAATCTTGATCTTAGTCTCACCATCTaGCAGAAAGTGATGGTCTTGAGATTCGTAACTGAATTGGATCTC | + |
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Preference number: 5 (lower is better) Translates to: LLCSWLSNLDLSLTI*QKVMVLRFVTELDL Trigger: GAGATCCAATTCAGTTACGAATCTCAAGACCATCACTTTCTGTCAGATGGTGAGACTAAGATCAAGATTGGAGAGCCAGCTACAGAGGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| CDS CCA 72 bp | TCTCCAAATTCACGGAATTCTTTGCCTCTGGAGTCATaGGGAACATCCTCCTCAAGGCTGCCGGACTCTTCA | + |
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Preference number: 6 (lower is better) Translates to: SPNSRNSLPLES*GTSSSRLPDSS Trigger: TGAAGAGTCCGGCAGCCTTGAGGAGGATGTTCCCCATGACTCCAGAGGCAAAGAATTCCGTGAATTTGGAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| CDS TCA 72 bp | AGCTGGCTCTCCAATCTTGATCTTAGTCTCACCATCTaGCAGAAAGTGATGGTCTTGAGATTCGTAACTGAA | + |
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Preference number: 6 (lower is better) Translates to: SWLSNLDLSLTI*QKVMVLRFVTE Trigger: TTCAGTTACGAATCTCAAGACCATCACTTTCTGTCAGATGGTGAGACTAAGATCAAGATTGGAGAGCCAGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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| CDS TCA 72 bp | TCATCACAGTTATACTGTCTTCTTCTGAAAAGCATCTaGTCGTTCAATTCTTCTCCAAATTCACGGAATTCT | + |
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Preference number: 6 (lower is better) Translates to: SSQLYCLLLKSI*SFNSSPNSRNS Trigger: AGAATTCCGTGAATTTGGAGAAGAATTGAACGATCAGATGCTTTTCAGAAGAAGACAGTATAACTGTGATGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074941.8 |
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