RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZFP330 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031711

Ensembl transcript IDs: ENSMUST00000034147.4, ENSMUST00000211462.2

Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TCTTCCTCCATGGTCCCATACCCCTCGCTCACATTCCACACACTCTaGATCTGTGAGTGGGCAGGCACAGGCATGGGTGCTAAGACACTT +
Preference number: 1 (lower is better)
Translates to: SSSMVPYPSLTFHTL*ICEWAGTGMGAKTL
Trigger: AAGTGTCTTAGCACCCATGCCTGTGCCTGCCCACTCACAGATGCAGAGTGTGTGGAATGTGAGCGAGGGGTATGGGACCATGGAGGAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211462.2
3UTR CCA 90 bp TCACATTCCACACACTCTGCATCTGTGAGTGGGCAGGCACAGGCATaGGTGCTAAGACACTTCCTCCCATGGCAAACCCAAGCTTCGCAG +
Preference number: 1 (lower is better)
Translates to: SHSTHSASVSGQAQA*VLRHFLPWQTQASQ
Trigger: CTGCGAAGCTTGGGTTTGCCATGGGAGGAAGTGTCTTAGCACCCATGCCTGTGCCTGCCCACTCACAGATGCAGAGTGTGTGGAATGTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211462.2
3UTR TCA 90 bp GCCCAGTGTGACTGGACTTTTGGACAAGGCAAGGGAGGGTCCATCTaGGCATCCTCAGATTCAGCCTGCTCTTCCCACAAGTGCCAACAA +
Preference number: 1 (lower is better)
Translates to: AQCDWTFGQGKGGSI*ASSDSACSSHKCQQ
Trigger: TTGTTGGCACTTGTGGGAAGAGCAGGCTGAATCTGAGGATGCTCAGATGGACCCTCCCTTGCCTTGTCCAAAAGTCCAGTCACACTGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034147.4
3UTR CCA 90 bp GTGAGTGGGCAGGCACAGGCATGGGTGCTAAGACACTTCCTCCCATaGCAAACCCAAGCTTCGCAGAAGTCACATATTGCACCCACCATA +
Preference number: 1 (lower is better)
Translates to: VSGQAQAWVLRHFLP*QTQASQKSHIAPTI
Trigger: TATGGTGGGTGCAATATGTGACTTCTGCGAAGCTTGGGTTTGCCATGGGAGGAAGTGTCTTAGCACCCATGCCTGTGCCTGCCCACTCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211462.2
3UTR TCA 90 bp GCTCCTTGTATGTTCATCACAGAAACAAGCCTTACAGCGGAGACATaGATGCTGGCCAAGTCGATTGCAGGAAACACATTTAAATGTTTC +
Preference number: 1 (lower is better)
Translates to: APCMFITETSLTAET*MLAKSIAGNTFKCF
Trigger: GAAACATTTAAATGTGTTTCCTGCAATCGACTTGGCCAGCATTCATGTCTCCGCTGTAAGGCTTGTTTCTGTGATGAACATACAAGGAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211462.2
3UTR CCA 90 bp GTATGTTCATCACAGAAACAAGCCTTACAGCGGAGACATGAATGCTaGCCAAGTCGATTGCAGGAAACACATTTAAATGTTTCTGCTTCT +
Preference number: 1 (lower is better)
Translates to: VCSSQKQALQRRHEC*PSRLQETHLNVSAS
Trigger: AGAAGCAGAAACATTTAAATGTGTTTCCTGCAATCGACTTGGCCAGCATTCATGTCTCCGCTGTAAGGCTTGTTTCTGTGATGAACATAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211462.2
3UTR-3UTR GCA 90 bp CCATACCCCTCGCTCACATTCCACACACTCTGCATCTGTGAGTGGGCAGGCACACTGTACACACCAGCATaGTTGATAACACAGTCTGAC +
Preference number: 2 (lower is better)
Translates to: PYPSLTFHTLCICEWAGTLYTPA*LITQSD
Trigger: GTCAGACTGTGTTATCAAGCATGCTGGTGTGTACAG...TGTGCCTGCCCACTCACAGATGCAGAGTGTGTGGAATGTGAGCGAGGGGTATGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211462.2
3UTR-3UTR CCA 90 bp TCTCTGGGTGAAGCAGCAGCAACACTAGCCCTGCCTGCCATTATGTGGATGAAACGAGCCCAGTGTGACTaGACTTTTGGACAAGGCAAG +
Preference number: 2 (lower is better)
Translates to: SLGEAAATLALPAIMWMKRAQCD*TFGQGK
Trigger: CTTGCCTTGTCCAAAAGTCCAGTCACACTGGGCTCG...TTTCATCCACATAATGGCAGGCAGGGCTAGTGTTGCTGCTGCTTCACCCAGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034147.4
3UTR-3UTR TCA 90 bp TCCTTGTATGTTCATCACAGAAACAAGCCTTACAGCGGAGACATGAATGCTGGCCACACTCTGCATCTGTaGGTGGGCAGGCACAGGCAT +
Preference number: 2 (lower is better)
Translates to: SLYVHHRNKPYSGDMNAGHTLHL*VGRHRH
Trigger: ATGCCTGTGCCTGCCCACTCACAGATGCAGAGTGTG...GCCAGCATTCATGTCTCCGCTGTAAGGCTTGTTTCTGTGATGAACATACAAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211462.2
3UTR-3UTR CCA 90 bp CTTTGTCTCCTGTGTTTCATGCCCACATTTAGGGCAAGGAGGTTGTTTTCCTTTGGGCAGGCACAGGCATaGGTGCTAAGACACTTCCTC +
Preference number: 2 (lower is better)
Translates to: LCLLCFMPTFRARRLFSFGQAQA*VLRHFL
Trigger: GAGGAAGTGTCTTAGCACCCATGCCTGTGCCTGCCC...AAAGGAAAACAACCTCCTTGCCCTAAATGTGGGCATGAAACACAGGAGACAAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211462.2
3UTR-3UTR GCA 90 bp TCCTTTGTCTCCTGTGTTTCATGCCCACATTTAGGGCAAGGAGGTTGTTTTCCTCAGCGGAGACATGAATaGTGGCCAAGTCGATTGCAG +
Preference number: 2 (lower is better)
Translates to: SFVSCVSCPHLGQGGCFPQRRHE*WPSRLQ
Trigger: CTGCAATCGACTTGGCCAGCATTCATGTCTCCGCTG...AGGAAAACAACCTCCTTGCCCTAAATGTGGGCATGAAACACAGGAGACAAAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211462.2
3UTR-3UTR TCA 90 bp ACTTGTCCGACGACAGGTTCTTCCAGTAAGCATCATACCCTGAGGCTCCATCTTGGCAAAACGAACAGCTaGATATTCTTCCTCCATGGT +
Preference number: 2 (lower is better)
Translates to: TCPTTGSSSKHHTLRLHLGKTNS*IFFLHG
Trigger: ACCATGGAGGAAGAATATTCAGCTGTTCGTTTTGCC...AAGATGGAGCCTCAGGGTATGATGCTTACTGGAAGAACCTGTCGTCGGACAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211462.2
3UTR-3UTR CCA 90 bp GCAGCAGCAACACTAGCCCTGCCTGCCATTATGTGGATGAAAACAGCTAGACTTGACAGTAACAAGCACTaGATAGACATTGTAAGAAAA +
Preference number: 2 (lower is better)
Translates to: AAATLALPAIMWMKTARLDSNKH*IDIVRK
Trigger: TTTTCTTACAATGTCTATCCAGTGCTTGTTACTGTC...AAGTCTAGCTGTTTTCATCCACATAATGGCAGGCAGGGCTAGTGTTGCTGCTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034147.4
3UTR-3UTR GCA 90 bp ATTATGTTTCTAGCTGGCAAAACCCACCAGATTATTGAACTCAGTAATAATCCATCCTCAGATTCAGCCTaGTCTTCCCACAAGTGCCAA +
Preference number: 2 (lower is better)
Translates to: IMFLAGKTHQIIELSNNPSSDSA*SSHKCQ
Trigger: TTGGCACTTGTGGGAAGAGCAGGCTGAATCTGAGGA...TGGATTATTACTGAGTTCAATAATCTGGTGGGTTTTGCCAGCTAGAAACATAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034147.4
3UTR-3UTR CCA 90 bp TCCTTTGTCTCCTGTGTTTCATGCCCACATTTAGGGCAAGGAGGTTGTTTTCCTTCACAGAGAAAATTATaGCAAAACGAACAGCTGAAT +
Preference number: 2 (lower is better)
Translates to: SFVSCVSCPHLGQGGCFPSQRKL*QNEQLN
Trigger: ATTCAGCTGTTCGTTTTGCCATAATTTTCTCTGTGA...AGGAAAACAACCTCCTTGCCCTAAATGTGGGCATGAAACACAGGAGACAAAGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000211462.2
3UTR CCA 72 bp ACACACTCTGCATCTGTGAGTGGGCAGGCACAGGCATaGGTGCTAAGACACTTCCTCCCATGGCAAACCCAA +
Preference number: 3 (lower is better)
Translates to: THSASVSGQAQA*VLRHFLPWQTQ
Trigger: TTGGGTTTGCCATGGGAGGAAGTGTCTTAGCACCCATGCCTGTGCCTGCCCACTCACAGATGCAGAGTGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211462.2
3UTR TCA 72 bp GACTGGACTTTTGGACAAGGCAAGGGAGGGTCCATCTaGGCATCCTCAGATTCAGCCTGCTCTTCCCACAAG +
Preference number: 3 (lower is better)
Translates to: DWTFGQGKGGSI*ASSDSACSSHK
Trigger: CTTGTGGGAAGAGCAGGCTGAATCTGAGGATGCTCAGATGGACCCTCCCTTGCCTTGTCCAAAAGTCCAGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034147.4
3UTR GCA 72 bp TCATACCCTGAGGCTCCATCTTCTTCTCCTCCAGTCTaGCTGCCAAATTTCAAGGAGCGTGTTGACATGCTA +
Preference number: 3 (lower is better)
Translates to: SYPEAPSSSPPV*LPNFKERVDML
Trigger: TAGCATGTCAACACGCTCCTTGAAATTTGGCAGGCAGACTGGAGGAGAAGAAGATGGAGCCTCAGGGTATGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211462.2
3UTR-3UTR CAA 90 bp AAACGAACAGCTGAATATTCTTCCTCCATGGTCCCATACCCCTCGCTCACATTCTACACACCAGCATGCTaGATAACACAGTCTGACGAC +
Preference number: 3 (lower is better)
Translates to: KRTAEYSSSMVPYPSLTFYTPAC*ITQSDD
Trigger: GTCGTCAGACTGTGTTATCAAGCATGCTGGTGTGTA...GAATGTGAGCGAGGGGTATGGGACCATGGAGGAAGAATATTCAGCTGTTCGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211462.2
3UTR-3UTR CAA 90 bp CCGACGACAGGTTCTTCCAGTAAGCATCATACCCTGAGGCTCCATCTTCTTCTCTCTTGCTTAAACACTTaGCTCCTTGTATGTTCATCA +
Preference number: 3 (lower is better)
Translates to: PTTGSSSKHHTLRLHLLLSCLNT*LLVCSS
Trigger: TGATGAACATACAAGGAGCAAAGTGTTTAAGCAAGA...GAGAAGAAGATGGAGCCTCAGGGTATGATGCTTACTGGAAGAACCTGTCGTCGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211462.2
3UTR TCA 72 bp ATGTTCATCACAGAAACAAGCCTTACAGCGGAGACATaGATGCTGGCCAAGTCGATTGCAGGAAACACATTT +
Preference number: 3 (lower is better)
Translates to: MFITETSLTAET*MLAKSIAGNTF
Trigger: AAATGTGTTTCCTGCAATCGACTTGGCCAGCATTCATGTCTCCGCTGTAAGGCTTGTTTCTGTGATGAACAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211462.2
3UTR GCA 72 bp TCATCACAGAAACAAGCCTTACAGCGGAGACATGAATaGTGGCCAAGTCGATTGCAGGAAACACATTTAAAT +
Preference number: 3 (lower is better)
Translates to: SSQKQALQRRHE*WPSRLQETHLN
Trigger: ATTTAAATGTGTTTCCTGCAATCGACTTGGCCAGCATTCATGTCTCCGCTGTAAGGCTTGTTTCTGTGATGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211462.2
3UTR CCA 72 bp TCACAGAAACAAGCCTTACAGCGGAGACATGAATGCTaGCCAAGTCGATTGCAGGAAACACATTTAAATGTT +
Preference number: 3 (lower is better)
Translates to: SQKQALQRRHEC*PSRLQETHLNV
Trigger: AACATTTAAATGTGTTTCCTGCAATCGACTTGGCCAGCATTCATGTCTCCGCTGTAAGGCTTGTTTCTGTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211462.2
3UTR TCA 72 bp TTAAATGTTTCTGCTTCTAAAACTTGGCAGCTGGCTTaGTGCTCAAACTGGTCATCTTCACAGAGAAAATTA +
Preference number: 3 (lower is better)
Translates to: LNVSASKTWQLA*CSNWSSSQRKL
Trigger: TAATTTTCTCTGTGAAGATGACCAGTTTGAGCATCAAGCCAGCTGCCAAGTTTTAGAAGCAGAAACATTTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211462.2
CDS-3UTR CCA 90 bp ACTGCGAGAACCTCCCGAGCCCAGTGTGACTGGACTTTTGGACAAGGCAAGGGAGGGCAGGCACAGGCATaGGTGCTAAGACACTTCCTC +
Preference number: 4 (lower is better)
Translates to: TARTSRAQCDWTFGQGKGGQAQA*VLRHFL
Trigger: GAGGAAGTGTCTTAGCACCCATGCCTGTGCCTGCCC...TCCCTTGCCTTGTCCAAAAGTCCAGTCACACTGGGCTCGGGAGGTTCTCGCAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034147.4
CDS-3UTR CCA 90 bp ACTGCGAGAACCTCCCGAGCCCAGTGTGACTGGACTTTTGGACAAGGCAAGGGACTCTGCATCTGTGAGTaGGCAGGCACAGGCATGGGT +
Preference number: 4 (lower is better)
Translates to: TARTSRAQCDWTFGQGKGLCICE*AGTGMG
Trigger: ACCCATGCCTGTGCCTGCCCACTCACAGATGCAGAG...TCCCTTGCCTTGTCCAAAAGTCCAGTCACACTGGGCTCGGGAGGTTCTCGCAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034147.4
3UTR CAA 72 bp CTGCGAGAACCTCCCGAGCCCAGTGTGACTGGACTTTaGGACAAGGCAAGGGAGGGTCCATCTGAGCATCCT +
Preference number: 4 (lower is better)
Translates to: LREPPEPSVTGL*DKAREGPSEHP
Trigger: AGGATGCTCAGATGGACCCTCCCTTGCCTTGTCCAAAAGTCCAGTCACACTGGGCTCGGGAGGTTCTCGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034147.4
CDS-3UTR GCA 90 bp AGAACCTCCCGAGCCCAGTGTGACTGGACTTTTGGACAAGGCAAGGGAGGGTCCCAGCGGAGACATGAATaGTGGCCAAGTCGATTGCAG +
Preference number: 4 (lower is better)
Translates to: RTSRAQCDWTFGQGKGGSQRRHE*WPSRLQ
Trigger: CTGCAATCGACTTGGCCAGCATTCATGTCTCCGCTG...GGACCCTCCCTTGCCTTGTCCAAAAGTCCAGTCACACTGGGCTCGGGAGGTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034147.4
CDS-3UTR TCA 90 bp AGAACCTCCCGAGCCCAGTGTGACTGGACTTTTGGACAAGGCAAGGGAGGGTCCACTTGGCAGCTGGCTTaGTGCTCAAACTGGTCATCT +
Preference number: 4 (lower is better)
Translates to: RTSRAQCDWTFGQGKGGSTWQLA*CSNWSS
Trigger: AGATGACCAGTTTGAGCATCAAGCCAGCTGCCAAGT...GGACCCTCCCTTGCCTTGTCCAAAAGTCCAGTCACACTGGGCTCGGGAGGTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034147.4
CDS-3UTR GCA 90 bp ACTTGTCCGACGACAGGTTCTTCCAGTAAGCATCATACCCTGAGGCTCCATCTTTTCTCGGCGGTTCTCTaGCTTCTTCCTCGCACCGGT +
Preference number: 4 (lower is better)
Translates to: TCPTTGSSSKHHTLRLHLFSAVL*LLPRTG
Trigger: ACCGGTGCGAGGAAGAAGGCAGAGAACCGCCGAGAA...AAGATGGAGCCTCAGGGTATGATGCTTACTGGAAGAACCTGTCGTCGGACAAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211462.2
CDS-3UTR GCA 90 bp TCTCTGGGTGAAGCAGCAGCAACACTAGCCCTGCCTGCCATTATGTGGATGAAACTCCTCCAGTCTGCCTaGCAAATTTCAAGGAGCGTG +
Preference number: 4 (lower is better)
Translates to: SLGEAAATLALPAIMWMKLLQSA*QISRSV
Trigger: CACGCTCCTTGAAATTTGGCAGGCAGACTGGAGGAG...TTTCATCCACATAATGGCAGGCAGGGCTAGTGTTGCTGCTGCTTCACCCAGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034147.4
CDS-3UTR TCA 90 bp AGAACCTCCCGAGCCCAGTGTGACTGGACTTTTGGACAAGGCAAGGGAGGGTCCCTTGATAACACAGTCTaGCGACTTCATCATACACTT +
Preference number: 4 (lower is better)
Translates to: RTSRAQCDWTFGQGKGGSLDNTV*RLHHTL
Trigger: AAGTGTATGATGAAGTCGTCAGACTGTGTTATCAAG...GGACCCTCCCTTGCCTTGTCCAAAAGTCCAGTCACACTGGGCTCGGGAGGTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034147.4
CDS-3UTR TCA 90 bp ACTGCGAGAACCTCCCGAGCCCAGTGTGACTGGACTTTTGGACAAGGCAAGGGATTTCAAGGAGCGTGTTaGCATGCTAAGATCCTTTGT +
Preference number: 4 (lower is better)
Translates to: TARTSRAQCDWTFGQGKGFQGAC*HAKILC
Trigger: ACAAAGGATCTTAGCATGTCAACACGCTCCTTGAAA...TCCCTTGCCTTGTCCAAAAGTCCAGTCACACTGGGCTCGGGAGGTTCTCGCAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034147.4
CDS-3UTR CCA 90 bp AGAACCTCCCGAGCCCAGTGTGACTGGACTTTTGGACAAGGCAAGGGAGGGTCCTCCTCATCATCATCATaGTATCCAGTATCTCCATAC +
Preference number: 4 (lower is better)
Translates to: RTSRAQCDWTFGQGKGGSSSSSS*YPVSPY
Trigger: GTATGGAGATACTGGATACCATGATGATGATGAGGA...GGACCCTCCCTTGCCTTGTCCAAAAGTCCAGTCACACTGGGCTCGGGAGGTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034147.4
CDS-3UTR TCA 90 bp TGCATCTGTGAGTGGGCAGGCACAGGCATGGGTGCTAAGACACTTCCTCCCATGACTTTGTTTTCCCATTaGAGCATTGCATGGGTGTTT +
Preference number: 4 (lower is better)
Translates to: CICEWAGTGMGAKTLPPMTLFSH*SIAWVF
Trigger: AAACACCCATGCAATGCTTCAATGGGAAAACAAAGT...CATGGGAGGAAGTGTCTTAGCACCCATGCCTGTGCCTGCCCACTCACAGATGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211462.2
CDS-3UTR GCA 90 bp AGAACCTCCCGAGCCCAGTGTGACTGGACTTTTGGACAAGGCAAGGGAGGGTCCACAAAAATAGCAAAATaGTCTATTCTTCTGCCGCCT +
Preference number: 4 (lower is better)
Translates to: RTSRAQCDWTFGQGKGGSTKIAK*SILLPP
Trigger: AGGCGGCAGAAGAATAGAGCATTTTGCTATTTTTGT...GGACCCTCCCTTGCCTTGTCCAAAAGTCCAGTCACACTGGGCTCGGGAGGTTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000034147.4
CDS-3UTR GCA 90 bp TCTCTGGGTGAAGCAGCAGCAACACTAGCCCTGCCTGCCATTATGTGGATGAAAGTCTCCTGTGTTTCATaGCCACATTTAGGGCAAGGA +
Preference number: 4 (lower is better)
Translates to: SLGEAAATLALPAIMWMKVSCVS*PHLGQG
Trigger: TCCTTGCCCTAAATGTGGGCATGAAACACAGGAGAC...TTTCATCCACATAATGGCAGGCAGGGCTAGTGTTGCTGCTGCTTCACCCAGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034147.4
CDS-3UTR CCA 90 bp GCAGCAGCAACACTAGCCCTGCCTGCCATTATGTGGATGAAAACAGCTAGACTTCGGAGACATGAATGCTaGCCAAGTCGATTGCAGGAA +
Preference number: 4 (lower is better)
Translates to: AAATLALPAIMWMKTARLRRHEC*PSRLQE
Trigger: TTCCTGCAATCGACTTGGCCAGCATTCATGTCTCCG...AAGTCTAGCTGTTTTCATCCACATAATGGCAGGCAGGGCTAGTGTTGCTGCTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034147.4
CDS-3UTR TCA 90 bp GCAGCAGCAACACTAGCCCTGCCTGCCATTATGTGGATGAAAACAGCTAGACTTGTCGACAGTACTTCTTaGTGCTCGCAGTTGTTTCTC +
Preference number: 4 (lower is better)
Translates to: AAATLALPAIMWMKTARLVDSTS*CSQLFL
Trigger: GAGAAACAACTGCGAGCATCAAGAAGTACTGTCGAC...AAGTCTAGCTGTTTTCATCCACATAATGGCAGGCAGGGCTAGTGTTGCTGCTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034147.4
CDS-3UTR CCA 90 bp GCAGCAGCAACACTAGCCCTGCCTGCCATTATGTGGATGAAAACAGCTAGACTTAGTGAGCGTAGCCACTaGCATAGGTCCTTCCTAAAT +
Preference number: 4 (lower is better)
Translates to: AAATLALPAIMWMKTARLSERSH*HRSFLN
Trigger: ATTTAGGAAGGACCTATGCCAGTGGCTACGCTCACT...AAGTCTAGCTGTTTTCATCCACATAATGGCAGGCAGGGCTAGTGTTGCTGCTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034147.4
CDS-3UTR TCA 90 bp TCCTTTGTCTCCTGTGTTTCATGCCCACATTTAGGGCAAGGAGGTTGTTTTCCTGTCGACAGTACTTCTTaGTGCTCGCAGTTGTTTCTC +
Preference number: 4 (lower is better)
Translates to: SFVSCVSCPHLGQGGCFPVDSTS*CSQLFL
Trigger: GAGAAACAACTGCGAGCATCAAGAAGTACTGTCGAC...AGGAAAACAACCTCCTTGCCCTAAATGTGGGCATGAAACACAGGAGACAAAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211462.2
CDS-3UTR TCA 90 bp ATTATGTTTCTAGCTGGCAAAACCCACCAGATTATTGAACTCAGTAATAATCCACACACTCTGCATCTGTaGGTGGGCAGGCACAGGCAT +
Preference number: 4 (lower is better)
Translates to: IMFLAGKTHQIIELSNNPHTLHL*VGRHRH
Trigger: ATGCCTGTGCCTGCCCACTCACAGATGCAGAGTGTG...TGGATTATTACTGAGTTCAATAATCTGGTGGGTTTTGCCAGCTAGAAACATAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034147.4
CDS-3UTR GCA 90 bp ATTATGTTTCTAGCTGGCAAAACCCACCAGATTATTGAACTCAGTAATAATCCATTCTCGGCGGTTCTCTaGCTTCTTCCTCGCACCGGT +
Preference number: 4 (lower is better)
Translates to: IMFLAGKTHQIIELSNNPFSAVL*LLPRTG
Trigger: ACCGGTGCGAGGAAGAAGGCAGAGAACCGCCGAGAA...TGGATTATTACTGAGTTCAATAATCTGGTGGGTTTTGCCAGCTAGAAACATAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034147.4
CDS-3UTR TCA 90 bp GCTCCATCTGTCTTACATCTAACTCACTTTACGTACACTGCAAGTTCACATAGCGGCAAAACGAACAGCTaGATATTCTTCCTCCATGGT +
Preference number: 4 (lower is better)
Translates to: APSVLHLTHFTYTASSHSGKTNS*IFFLHG
Trigger: ACCATGGAGGAAGAATATTCAGCTGTTCGTTTTGCC...GCTATGTGAACTTGCAGTGTACGTAAAGTGAGTTAGATGTAAGACAGATGGAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034147.4
CDS-3UTR TCA 90 bp AGAGTGAACATTACCCAGCATGAAGTCAGTGAAAAACTGAACATGACTCTCATTGTAAGCATCATACCCTaGGGCTCCATCTTCTTCTCC +
Preference number: 4 (lower is better)
Translates to: RVNITQHEVSEKLNMTLIVSIIP*GSIFFS
Trigger: GGAGAAGAAGATGGAGCCTCAGGGTATGATGCTTAC...AATGAGAGTCATGTTCAGTTTTTCACTGACTTCATGCTGGGTAATGTTCACTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034147.4
CDS-3UTR GCA 90 bp AGAGTGAACATTACCCAGCATGAAGTCAGTGAAAAACTGAACATGACTCTCATTTCTTCTCCTCCAGTCTaGCTGCCAAATTTCAAGGAG +
Preference number: 4 (lower is better)
Translates to: RVNITQHEVSEKLNMTLISSPPV*LPNFKE
Trigger: CTCCTTGAAATTTGGCAGGCAGACTGGAGGAGAAGA...AATGAGAGTCATGTTCAGTTTTTCACTGACTTCATGCTGGGTAATGTTCACTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034147.4
CDS-3UTR GCA 90 bp ATTATGTTTCTAGCTGGCAAAACCCACCAGATTATTGAACTCAGTAATAATCCACTGTACACACCAGCATaGTTGATAACACAGTCTGAC +
Preference number: 4 (lower is better)
Translates to: IMFLAGKTHQIIELSNNPLYTPA*LITQSD
Trigger: GTCAGACTGTGTTATCAAGCATGCTGGTGTGTACAG...TGGATTATTACTGAGTTCAATAATCTGGTGGGTTTTGCCAGCTAGAAACATAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034147.4
CDS-3UTR CCA 90 bp ATTATGTTTCTAGCTGGCAAAACCCACCAGATTATTGAACTCAGTAATAATCCACTAAAACTTGGCAGCTaGCTTGATGCTCAAACTGGT +
Preference number: 4 (lower is better)
Translates to: IMFLAGKTHQIIELSNNPLKLGS*LDAQTG
Trigger: ACCAGTTTGAGCATCAAGCCAGCTGCCAAGTTTTAG...TGGATTATTACTGAGTTCAATAATCTGGTGGGTTTTGCCAGCTAGAAACATAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034147.4
CDS-3UTR CCA 90 bp ATTATGTTTCTAGCTGGCAAAACCCACCAGATTATTGAACTCAGTAATAATCCATCACAGAGAAAATTATaGCAAAACGAACAGCTGAAT +
Preference number: 4 (lower is better)
Translates to: IMFLAGKTHQIIELSNNPSQRKL*QNEQLN
Trigger: ATTCAGCTGTTCGTTTTGCCATAATTTTCTCTGTGA...TGGATTATTACTGAGTTCAATAATCTGGTGGGTTTTGCCAGCTAGAAACATAAT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000034147.4
CDS-3UTR CAA 90 bp AGAACCTCCCGAGCCCAGTGTGACTGGACTTTTGGACAAGGCAAGGGAGGGTCCAACTTGGCAGCTGGCTaGATGCTCAAACTGGTCATC +
Preference number: 5 (lower is better)
Translates to: RTSRAQCDWTFGQGKGGSNLAAG*MLKLVI
Trigger: GATGACCAGTTTGAGCATCAAGCCAGCTGCCAAGTT...GGACCCTCCCTTGCCTTGTCCAAAAGTCCAGTCACACTGGGCTCGGGAGGTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034147.4
CDS-3UTR CAA 90 bp GCAGCAGCAACACTAGCCCTGCCTGCCATTATGTGGATGAAAACAGCTAGACTTGCATTGCATGGGTGTTaGGCTAGGTCGACAGTACTT +
Preference number: 5 (lower is better)
Translates to: AAATLALPAIMWMKTARLALHGC*ARSTVL
Trigger: AAGTACTGTCGACCTAGCCAAACACCCATGCAATGC...AAGTCTAGCTGTTTTCATCCACATAATGGCAGGCAGGGCTAGTGTTGCTGCTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034147.4
CDS-3UTR CAA 90 bp TTCGCAGAAGTCACATATTGCACCCACCATAGCAAGGCCAGTACTGTACACACCGCATTGCATGGGTGTTaGGCTAGGTCGACAGTACTT +
Preference number: 5 (lower is better)
Translates to: FAEVTYCTHHSKASTVHTALHGC*ARSTVL
Trigger: AAGTACTGTCGACCTAGCCAAACACCCATGCAATGC...GGTGTGTACAGTACTGGCCTTGCTATGGTGGGTGCAATATGTGACTTCTGCGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211462.2
CDS-3UTR CAA 90 bp TCTCTGGGTGAAGCAGCAGCAACACTAGCCCTGCCTGCCATTATGTGGATGAAATACACACCAGCATGCTaGATAACACAGTCTGACGAC +
Preference number: 5 (lower is better)
Translates to: SLGEAAATLALPAIMWMKYTPAC*ITQSDD
Trigger: GTCGTCAGACTGTGTTATCAAGCATGCTGGTGTGTA...TTTCATCCACATAATGGCAGGCAGGGCTAGTGTTGCTGCTGCTTCACCCAGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034147.4
CDS TCA 90 bp TCCATACTTGTCCGACGACAGGTTCTTCCAGTAAGCATCATACCCTaGGGCTCCATCTTCTTCTCCTCCAGTCTGCCTGCCAAATTTCAA +
Preference number: 5 (lower is better)
Translates to: SILVRRQVLPVSIIP*GSIFFSSSLPAKFQ
Trigger: TTGAAATTTGGCAGGCAGACTGGAGGAGAAGAAGATGGAGCCTCAGGGTATGATGCTTACTGGAAGAACCTGTCGTCGGACAAGTATGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034147.4
CDS CCA 90 bp GCCTCTGACATTTGTCGCATTCCATTGAAGCATTGCATGGGTGTTTaGCTAGGTCGACAGTACTTCTTGATGCTCGCAGTTGTTTCTCGC +
Preference number: 5 (lower is better)
Translates to: ASDICRIPLKHCMGV*LGRQYFLMLAVVSR
Trigger: GCGAGAAACAACTGCGAGCATCAAGAAGTACTGTCGACCTAGCCAAACACCCATGCAATGCTTCAATGGAATGCGACAAATGTCAGAGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034147.4
CDS GCA 90 bp TATTCTTCTGCCGCCTCTGACATTTGTCGCATTCCATTGAAGCATTaGATGGGTGTTTGGCTAGGTCGACAGTACTTCTTGATGCTCGCA +
Preference number: 5 (lower is better)
Translates to: YSSAASDICRIPLKH*MGVWLGRQYFLMLA
Trigger: TGCGAGCATCAAGAAGTACTGTCGACCTAGCCAAACACCCATGCAATGCTTCAATGGAATGCGACAAATGTCAGAGGCGGCAGAAGAATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034147.4
CDS-3UTR CAA 90 bp ACCCAAGCTTCGCAGAAGTCACATATTGCACCCACCATAGCAAGGCCAGTACTGCACTTTGTTTTCCCATaGAAGCATTGCATGGGTGTT +
Preference number: 5 (lower is better)
Translates to: TQASQKSHIAPTIARPVLHFVFP*KHCMGV
Trigger: AACACCCATGCAATGCTTCAATGGGAAAACAAAGTG...CAGTACTGGCCTTGCTATGGTGGGTGCAATATGTGACTTCTGCGAAGCTTGGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211462.2
CDS TCA 90 bp AGTGAGCGTAGCCACTGGCATAGGTCCTTCCTAAATTCAAGTTATTaGACAGATCTGATGACTCAGCATCTGAGTCCTTCCCATCTTCTT +
Preference number: 5 (lower is better)
Translates to: SERSHWHRSFLNSSY*TDLMTQHLSPSHLL
Trigger: AAGAAGATGGGAAGGACTCAGATGCTGAGTCATCAGATCTGTTCAATAACTTGAATTTAGGAAGGACCTATGCCAGTGGCTACGCTCACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034147.4
CDS GCA 90 bp CATATTGCACCCACCATAGCAAGGCCAGTACTGTACACACCAGCATaGTTGATAACACAGTCTGACGACTTCATCATACACTTTGTTTTC +
Preference number: 5 (lower is better)
Translates to: HIAPTIARPVLYTPA*LITQSDDFIIHFVF
Trigger: GAAAACAAAGTGTATGATGAAGTCGTCAGACTGTGTTATCAAGCATGCTGGTGTGTACAGTACTGGCCTTGCTATGGTGGGTGCAATATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034147.4
CDS-3UTR CAA 90 bp AGAGTGAACATTACCCAGCATGAAGTCAGTGAAAAACTGAACATGACTCTCATTTCTTGCTTAAACACTTaGCTCCTTGTATGTTCATCA +
Preference number: 5 (lower is better)
Translates to: RVNITQHEVSEKLNMTLISCLNT*LLVCSS
Trigger: TGATGAACATACAAGGAGCAAAGTGTTTAAGCAAGA...AATGAGAGTCATGTTCAGTTTTTCACTGACTTCATGCTGGGTAATGTTCACTCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034147.4
CDS GCA 72 bp TGCTCGCAGTTGTTTCTCGCGTTCTCGGCGGTTCTCTaGCTTCTTCCTCGCACCGGTCTTTTTCTTCGGCAT +
Preference number: 6 (lower is better)
Translates to: CSQLFLAFSAVL*LLPRTGLFLRH
Trigger: ATGCCGAAGAAAAAGACCGGTGCGAGGAAGAAGGCAGAGAACCGCCGAGAACGCGAGAAACAACTGCGAGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034147.4
ENSMUST00000211462.2
CDS CAA 72 bp CATTGCATGGGTGTTTGGCTAGGTCGACAGTACTTCTaGATGCTCGCAGTTGTTTCTCGCGTTCTCGGCGGT +
Preference number: 6 (lower is better)
Translates to: HCMGVWLGRQYF*MLAVVSRVLGG
Trigger: ACCGCCGAGAACGCGAGAAACAACTGCGAGCATCAAGAAGTACTGTCGACCTAGCCAAACACCCATGCAATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034147.4
ENSMUST00000211462.2
CDS CAA 90 bp CCATTGAAGCATTGCATGGGTGTTTGGCTAGGTCGACAGTACTTCTaGATGCTCGCAGTTGTTTCTCGCGTTCTCGGCGGTTCTCTGCCT +
Preference number: 6 (lower is better)
Translates to: PLKHCMGVWLGRQYF*MLAVVSRVLGGSLP
Trigger: AGGCAGAGAACCGCCGAGAACGCGAGAAACAACTGCGAGCATCAAGAAGTACTGTCGACCTAGCCAAACACCCATGCAATGCTTCAATGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034147.4
ENSMUST00000211462.2
CDS GCA 72 bp CCCACCATAGCAAGGCCAGTACTGTACACACCAGCATaGTTGATAACACAGTCTGACGACTTCATCATACAC +
Preference number: 6 (lower is better)
Translates to: PTIARPVLYTPA*LITQSDDFIIH
Trigger: GTGTATGATGAAGTCGTCAGACTGTGTTATCAAGCATGCTGGTGTGTACAGTACTGGCCTTGCTATGGTGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034147.4
CDS CAA 72 bp CATTTGTCGCATTCCATTGAAGCATTGCATGGGTGTTaGGCTAGGTCGACAGTACTTCTTGATGCTCGCAGT +
Preference number: 6 (lower is better)
Translates to: HLSHSIEALHGC*ARSTVLLDARS
Trigger: ACTGCGAGCATCAAGAAGTACTGTCGACCTAGCCAAACACCCATGCAATGCTTCAATGGAATGCGACAAATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034147.4
CDS CAA 90 bp AAAATGCTCTATTCTTCTGCCGCCTCTGACATTTGTCGCATTCCATaGAAGCATTGCATGGGTGTTTGGCTAGGTCGACAGTACTTCTTG +
Preference number: 6 (lower is better)
Translates to: KMLYSSAASDICRIP*KHCMGVWLGRQYFL
Trigger: CAAGAAGTACTGTCGACCTAGCCAAACACCCATGCAATGCTTCAATGGAATGCGACAAATGTCAGAGGCGGCAGAAGAATAGAGCATTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034147.4
CDS CAA 90 bp ATTGCACCCACCATAGCAAGGCCAGTACTGTACACACCAGCATGCTaGATAACACAGTCTGACGACTTCATCATACACTTTGTTTTCCCA +
Preference number: 6 (lower is better)
Translates to: IAPTIARPVLYTPAC*ITQSDDFIIHFVFP
Trigger: TGGGAAAACAAAGTGTATGATGAAGTCGTCAGACTGTGTTATCAAGCATGCTGGTGTGTACAGTACTGGCCTTGCTATGGTGGGTGCAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034147.4
CDS CCA 72 bp ATTTGTCGCATTCCATTGAAGCATTGCATGGGTGTTTaGCTAGGTCGACAGTACTTCTTGATGCTCGCAGTT +
Preference number: 6 (lower is better)
Translates to: ICRIPLKHCMGV*LGRQYFLMLAV
Trigger: AACTGCGAGCATCAAGAAGTACTGTCGACCTAGCCAAACACCCATGCAATGCTTCAATGGAATGCGACAAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034147.4
CDS CCA 72 bp CACTTTGTTTTCCCATTGAAGCATTGCATGGGTGTTTaGCTAGGTCGACAGTACTTCTTGATGCTCGCAGTT +
Preference number: 6 (lower is better)
Translates to: HFVFPLKHCMGV*LGRQYFLMLAV
Trigger: AACTGCGAGCATCAAGAAGTACTGTCGACCTAGCCAAACACCCATGCAATGCTTCAATGGGAAAACAAAGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211462.2
CDS CAA 72 bp ACACTTTGTTTTCCCATTGAAGCATTGCATGGGTGTTaGGCTAGGTCGACAGTACTTCTTGATGCTCGCAGT +
Preference number: 6 (lower is better)
Translates to: TLCFPIEALHGC*ARSTVLLDARS
Trigger: ACTGCGAGCATCAAGAAGTACTGTCGACCTAGCCAAACACCCATGCAATGCTTCAATGGGAAAACAAAGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211462.2
CDS CAA 72 bp ACCATAGCAAGGCCAGTACTGTACACACCAGCATGCTaGATAACACAGTCTGACGACTTCATCATACACTTT +
Preference number: 6 (lower is better)
Translates to: TIARPVLYTPAC*ITQSDDFIIHF
Trigger: AAAGTGTATGATGAAGTCGTCAGACTGTGTTATCAAGCATGCTGGTGTGTACAGTACTGGCCTTGCTATGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034147.4