RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZFP329 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000057894

Ensembl transcript IDs: ENSMUST00000072222.8, ENSMUST00000108546.2, ENSMUST00000121215.2

Found 137 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TCAGGCCTACGACTGAAAATTGCCCAGGTTGCACTGGAAGTCATCTaGAACTCTCCCAACTCAAATCTCACCTTTCCCCCTTTAGTCAAA +
Preference number: 1 (lower is better)
Translates to: SGLRLKIAQVALEVI*NSPNSNLTFPPLVK
Trigger: TTTGACTAAAGGGGGAAAGGTGAGATTTGAGTTGGGAGAGTTCCAGATGACTTCCAGTGCAACCTGGGCAATTTTCAGTCGTAGGCCTGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
3UTR CCA 90 bp ATCTCCATGTTGGAGGTAAAATCTGCTCTGGCACTGACACATTCTTaGGCTCCAGACATGCTTGATGAGGCTGAAATATGCCTCCTTCTT +
Preference number: 1 (lower is better)
Translates to: ISMLEVKSALALTHS*APDMLDEAEICLLL
Trigger: AAGAAGGAGGCATATTTCAGCCTCATCAAGCATGTCTGGAGCCCAAGAATGTGTCAGTGCCAGAGCAGATTTTACCTCCAACATGGAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
3UTR TCA 90 bp GACGGTGCTTTATTTCAGTGTATGCGCTACGTGTTTGGTATAGGCTaGATCATCCCTGAAGCCTTTCCTACATTGACTACCTTTCAGTCC +
Preference number: 1 (lower is better)
Translates to: DGALFQCMRYVFGIG*IIPEAFPTLTTFQS
Trigger: GGACTGAAAGGTAGTCAATGTAGGAAAGGCTTCAGGGATGATTCAGCCTATACCAAACACGTAGCGCATACACTGAAATAAAGCACCGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000121215.2
3UTR TCA 90 bp AGAAAAGAGCAAGGGGAAACAGTTCACCCTCACACAAATCCCATGTaGACTTACTACAATTTCAGAGTTGACACCTCTTCCTTGCGGTGC +
Preference number: 1 (lower is better)
Translates to: RKEQGETVHPHTNPM*TYYNFRVDTSSLRC
Trigger: GCACCGCAAGGAAGAGGTGTCAACTCTGAAATTGTAGTAAGTTCACATGGGATTTGTGTGAGGGTGAACTGTTTCCCCTTGCTCTTTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
3UTR GCA 90 bp ATCCCATGTGAACTTACTACAATTTCAGAGTTGACACCTCTTCCTTaGGGTGCTTCCCTCAGGTTTCTTGTTCCAGAATCTGAAATGCAG +
Preference number: 1 (lower is better)
Translates to: IPCELTTISELTPLP*GASLRFLVPESEMQ
Trigger: CTGCATTTCAGATTCTGGAACAAGAAACCTGAGGGAAGCACCGCAAGGAAGAGGTGTCAACTCTGAAATTGTAGTAAGTTCACATGGGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
3UTR GCA 90 bp CGTACTCCATACAGTTGTACAATTTCAGAGTTGACACCTCTTCCTTaGGGTGCTTCCCTCAGGTTTCTTGTTCCAGAATTGAATGACTTC +
Preference number: 1 (lower is better)
Translates to: RTPYSCTISELTPLP*GASLRFLVPELNDF
Trigger: GAAGTCATTCAATTCTGGAACAAGAAACCTGAGGGAAGCACCGCAAGGAAGAGGTGTCAACTCTGAAATTGTACAACTGTATGGAGTACG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121215.2
3UTR GCA 90 bp CTGCAAACACCTTGTTCTGCCTTCTGCTACAGTACCAACTCTTACTaGACGTACTCCATACAGTTGTACAATTTCAGAGTTGACACCTCT +
Preference number: 1 (lower is better)
Translates to: LQTPCSAFCYSTNSY*TYSIQLYNFRVDTS
Trigger: AGAGGTGTCAACTCTGAAATTGTACAACTGTATGGAGTACGTGCAGTAAGAGTTGGTACTGTAGCAGAAGGCAGAACAAGGTGTTTGCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121215.2
3UTR TCA 90 bp AGACGTCCCACCACTACGCCTTTATGGAAACAGGAAAGTACAAACTaGCAAAAGTGTCACTCCCAAATAACACTTCCAAGCTTTGACTCT +
Preference number: 1 (lower is better)
Translates to: RRPTTTPLWKQESTN*QKCHSQITLPSFDS
Trigger: AGAGTCAAAGCTTGGAAGTGTTATTTGGGAGTGACACTTTTGTCAGTTTGTACTTTCCTGTTTCCATAAAGGCGTAGTGGTGGGACGTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
3UTR TCA 90 bp ATATCCAAAATTCCAAAAGAAATGATTCTAGGCTTCGGGACGCTCTaGTTCCAGAGAAGCATCTGTCAGTATACACCTGGAGTTGCTTAT +
Preference number: 1 (lower is better)
Translates to: ISKIPKEMILGFGTL*FQRSICQYTPGVAY
Trigger: ATAAGCAACTCCAGGTGTATACTGACAGATGCTTCTCTGGAATCAGAGCGTCCCGAAGCCTAGAATCATTTCTTTTGGAATTTTGGATAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
3UTR GCA 90 bp AATGCAGTATCAAGAAGCAGGGACACTACTAACACTAATGGTACATaGATGTTTTACTTGAGAATAACAGACACCAAAGTGCTGCACCCT +
Preference number: 1 (lower is better)
Translates to: NAVSRSRDTTNTNGT*MFYLRITDTKVLHP
Trigger: AGGGTGCAGCACTTTGGTGTCTGTTATTCTCAAGTAAAACATGCATGTACCATTAGTGTTAGTAGTGTCCCTGCTTCTTGATACTGCATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
3UTR CCA 90 bp AGGGCCACATGTCTTATTTTTCCATTGATCTGCAATGTAAAGAATTaGCAAATGCACAGTGAAAAGAGACTGGTGATTGACAGAGTCAGA +
Preference number: 1 (lower is better)
Translates to: RATCLIFPLICNVKN*QMHSEKRLVIDRVR
Trigger: TCTGACTCTGTCAATCACCAGTCTCTTTTCACTGTGCATTTGCCAATTCTTTACATTGCAGATCAATGGAAAAATAAGACATGTGGCCCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
3UTR TCA 90 bp TATATATATAAAGAATTCTTTTCTGCGAGCAAGGGAAGTCACATCTaGAAACAAATCCTTTGTTCACTCAAGGACAGCATGGCCCATGTC +
Preference number: 1 (lower is better)
Translates to: YIYKEFFSASKGSHI*KQILCSLKDSMAHV
Trigger: GACATGGGCCATGCTGTCCTTGAGTGAACAAAGGATTTGTTTTCAGATGTGACTTCCCTTGCTCGCAGAAAAGAATTCTTTATATATATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000121215.2
3UTR CCA 90 bp ATATTGTTCATTATAGAGACAATCTGTAAGCTACAAATGATTGTGTaGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATACC +
Preference number: 1 (lower is better)
Translates to: ILFIIETICKLQMIV*CVCVCVCVCVCVYT
Trigger: GGTATACACACACACACACACACACACACACACACACACACACCACACAATCATTTGTAGCTTACAGATTGTCTCTATAATGAACAATAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
3UTR CCA 90 bp GCAATTCCACTCCTAAGCATCTACCCAAGAGTACTGAAAATTTATTaGCACATGAGTTTGTATGTTTTTAGGACAGCACTATTCTTAGTA +
Preference number: 1 (lower is better)
Translates to: AIPLLSIYPRVLKIY*HMSLYVFRTALFLV
Trigger: TACTAAGAATAGTGCTGTCCTAAAAACATACAAACTCATGTGCCAATAAATTTTCAGTACTCTTGGGTAGATGCTTAGGAGTGGAATTGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
3UTR-3UTR TCA 90 bp CCCATCCCCTTTCTCAGCTTTACTTTTCTCTCAGGCATCAACCACCATCTGATAAAATGCCTTCCTCGCTaGCGGTGCTTTATTTCAGTG +
Preference number: 2 (lower is better)
Translates to: PIPFLSFTFLSGINHHLIKCLPR*RCFISV
Trigger: CACTGAAATAAAGCACCGTCAGCGAGGAAGGCATTT...TATCAGATGGTGGTTGATGCCTGAGAGAAAAGTAAAGCTGAGAAAGGGGATGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000121215.2
3UTR CAA 90 bp TTCACCCTCACACAAATCCCATGTGAACTTACTACAATTTCAGAGTaGACACCTCTTCCTTGCGGTGCTTCCCTCAGGTTTCTTGTTCCA +
Preference number: 2 (lower is better)
Translates to: FTLTQIPCELTTISE*TPLPCGASLRFLVP
Trigger: TGGAACAAGAAACCTGAGGGAAGCACCGCAAGGAAGAGGTGTCAACTCTGAAATTGTAGTAAGTTCACATGGGATTTGTGTGAGGGTGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
3UTR CAA 90 bp TGCTGTCTACCACTCTCTCTCTATCCCCATCATATGATAACCATCTaGCTGTCAAGGGCATGCATACAGAAGACTGAGATGTCTAACTTC +
Preference number: 2 (lower is better)
Translates to: CCLPLSLYPHHMITI*LSRACIQKTEMSNF
Trigger: GAAGTTAGACATCTCAGTCTTCTGTATGCATGCCCTTGACAGCAAGATGGTTATCATATGATGGGGATAGAGAGAGAGTGGTAGACAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
3UTR-3UTR TCA 90 bp TTTCCTGTAAATGGGTTTACCCTTGCACAAAGCTTTGTTCTCCATACCTGTCTCAGGCTGAATCATCCCTaGAGCCTTTCCTACATTGAC +
Preference number: 2 (lower is better)
Translates to: FPVNGFTLAQSFVLHTCLRLNHP*SLSYID
Trigger: GTCAATGTAGGAAAGGCTTCAGGGATGATTCAGCCT...GAGACAGGTATGGAGAACAAAGCTTTGTGCAAGGGTAAACCCATTTACAGGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000121215.2
3UTR-3UTR TCA 90 bp CCCATCCCCTTTCTCAGCTTTACTTTTCTCTCAGGCATCAACCACCATCTGATATGGTTACCTACTGAATaGCTTCACAGGTTCTTTCCA +
Preference number: 2 (lower is better)
Translates to: PIPFLSFTFLSGINHHLIWLPTE*LHRFFP
Trigger: TGGAAAGAACCTGTGAAGTCATTCAGTAGGTAACCA...TATCAGATGGTGGTTGATGCCTGAGAGAAAAGTAAAGCTGAGAAAGGGGATGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
3UTR CAA 90 bp TCCTGTAGCCATGATCTAGCCTTTGTAGGTTGTCTGACAGTATCTTaGGCCTCTATCCACTGGCAAAGATCTAAGAGACTCCAAATTTGT +
Preference number: 2 (lower is better)
Translates to: SCSHDLAFVGCLTVS*ASIHWQRSKRLQIC
Trigger: ACAAATTTGGAGTCTCTTAGATCTTTGCCAGTGGATAGAGGCCAAAGATACTGTCAGACAACCTACAAAGGCTAGATCATGGCTACAGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
3UTR-3UTR CCA 90 bp AGCAAACAAAGATCCAGCAATTCCACTCCTAAGCATCTACCCAAGAGTACTGAAGCACTGGAAGTCATCTaGAACTCTCCCAACTCAAAT +
Preference number: 2 (lower is better)
Translates to: SKQRSSNSTPKHLPKSTEALEVI*NSPNSN
Trigger: ATTTGAGTTGGGAGAGTTCCAGATGACTTCCAGTGC...TTCAGTACTCTTGGGTAGATGCTTAGGAGTGGAATTGCTGGATCTTTGTTTGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
3UTR-3UTR TCA 90 bp AGTCATCGGTGGCTGAGTAGTTGCAGCGGAAATGATATTGAACACAGTTTAAAAGTGTTTGGTATAGGCTaGATCATCCCTGAAGCCTTT +
Preference number: 2 (lower is better)
Translates to: SHRWLSSCSGNDIEHSLKVFGIG*IIPEAF
Trigger: AAAGGCTTCAGGGATGATTCAGCCTATACCAAACAC...TTTTAAACTGTGTTCAATATCATTTCCGCTGCAACTACTCAGCCACCGATGACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
3UTR-3UTR TCA 90 bp AACCAAGCAGACGGGGATGGGATTAAAGTTACAAGAAAGTTACTCTATCTTTTCAAATGCCTTCCTCGCTaGCGGTGCTTTATTTCAGTG +
Preference number: 2 (lower is better)
Translates to: NQADGDGIKVTRKLLYLFKCLPR*RCFISV
Trigger: CACTGAAATAAAGCACCGTCAGCGAGGAAGGCATTT...GAAAAGATAGAGTAACTTTCTTGTAACTTTAATCCCATCCCCGTCTGCTTGGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
3UTR-3UTR TCA 90 bp AGCAAACAAAGATCCAGCAATTCCACTCCTAAGCATCTACCCAAGAGTACTGAATTCACTTTCTCCATCTaGTTCCAGCCCAAGTTTTCT +
Preference number: 2 (lower is better)
Translates to: SKQRSSNSTPKHLPKSTEFTFSI*FQPKFS
Trigger: AGAAAACTTGGGCTGGAATCAGATGGAGAAAGTGAA...TTCAGTACTCTTGGGTAGATGCTTAGGAGTGGAATTGCTGGATCTTTGTTTGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
3UTR-3UTR TCA 90 bp TTGCATGACATCATACCCCTTACATATCACACATGTAATTGCCTTTCATTGGGAGTACAATTTCAGAGTTaGCACCTCTTCCTTGCGGTG +
Preference number: 2 (lower is better)
Translates to: LHDIIPLTYHTCNCLSLGVQFQS*HLFLAV
Trigger: CACCGCAAGGAAGAGGTGTCAACTCTGAAATTGTAC...TCCCAATGAAAGGCAATTACATGTGTGATATGTAAGGGGTATGATGTCATGCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121215.2
3UTR-3UTR GCA 90 bp AGTCATCGGTGGCTGAGTAGTTGCAGCGGAAATGATATTGAACACAGTTTAAAATTTCACCTCACTAAATaGGTCATCTGTGTTCTGGCG +
Preference number: 2 (lower is better)
Translates to: SHRWLSSCSGNDIEHSLKFHLTK*VICVLA
Trigger: CGCCAGAACACAGATGACGCATTTAGTGAGGTGAAA...TTTTAAACTGTGTTCAATATCATTTCCGCTGCAACTACTCAGCCACCGATGACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
3UTR-3UTR CCA 90 bp CACATTTGCCTACAAATCATCTATAGCTCCTTCCACATTACAGTCATCGGTGGCACCACTACGCCTTTATaGAAACAGGAAAGTACAAAC +
Preference number: 2 (lower is better)
Translates to: HICLQIIYSSFHITVIGGTTTPL*KQESTN
Trigger: GTTTGTACTTTCCTGTTTCCATAAAGGCGTAGTGGT...GCCACCGATGACTGTAATGTGGAAGGAGCTATAGATGATTTGTAGGCAAATGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
3UTR CAA 90 bp ACTCACATGGTGGAAGGTTTCTCATCCCTAAATCCTAACCTCTTGTaGCATGACATCATACCCCTTACATATCACACATGTAATTGCCTT +
Preference number: 2 (lower is better)
Translates to: THMVEGFSSLNPNLL*HDIIPLTYHTCNCL
Trigger: AAGGCAATTACATGTGTGATATGTAAGGGGTATGATGTCATGCAACAAGAGGTTAGGATTTAGGGATGAGAAACCTTCCACCATGTGAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
ENSMUST00000121215.2
3UTR CAA 90 bp GTAACTCACATGGTGGAAGGTTTCTCATCCCTAAATCCTAACCTCTaGTTGCATGACATCATACCCCTTACATATCACACATGTAATTGC +
Preference number: 2 (lower is better)
Translates to: VTHMVEGFSSLNPNL*LHDIIPLTYHTCNC
Trigger: GCAATTACATGTGTGATATGTAAGGGGTATGATGTCATGCAACAAGAGGTTAGGATTTAGGGATGAGAAACCTTCCACCATGTGAGTTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
ENSMUST00000121215.2
3UTR-3UTR TCA 90 bp CACATTTGCCTACAAATCATCTATAGCTCCTTCCACATTACAGTCATCGGTGGCTTGCATACAATAAGGTaGTACTGTTCAAGATGTCTG +
Preference number: 2 (lower is better)
Translates to: HICLQIIYSSFHITVIGGLHTIR*YCSRCL
Trigger: CAGACATCTTGAACAGTATCACCTTATTGTATGCAA...GCCACCGATGACTGTAATGTGGAAGGAGCTATAGATGATTTGTAGGCAAATGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
3UTR-3UTR TCA 90 bp CACATGTCTTATTTTTCCATTGATCTGCAATGTAAAGAATTGGCAAATGCACAGAGGCTGAATCATCCCTaGAGCCTTTCCTACATTGAC +
Preference number: 2 (lower is better)
Translates to: HMSYFSIDLQCKELANAQRLNHP*SLSYID
Trigger: GTCAATGTAGGAAAGGCTTCAGGGATGATTCAGCCT...CTGTGCATTTGCCAATTCTTTACATTGCAGATCAATGGAAAAATAAGACATGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
3UTR-3UTR GCA 90 bp CTTGGTAAAAGAACACACTTCTGTCAGGAGTCTAAAAAGAACTATCAAGTGAAGAAGGATGCACTTTCTTaGCTCTCTGGCTTTCAGAAG +
Preference number: 2 (lower is better)
Translates to: LGKRTHFCQESKKNYQVKKDALS*LSGFQK
Trigger: CTTCTGAAAGCCAGAGAGGCAAGAAAGTGCATCCTT...CTTCACTTGATAGTTCTTTTTAGACTCCTGACAGAAGTGTGTTCTTTTACCAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
3UTR-3UTR TCA 90 bp CTTGGTAAAAGAACACACTTCTGTCAGGAGTCTAAAAAGAACTATCAAGTGAAGCTCAAAACAGGCTTATaGTTCTCTCTTCACAGGAAC +
Preference number: 2 (lower is better)
Translates to: LGKRTHFCQESKKNYQVKLKTGL*FSLHRN
Trigger: GTTCCTGTGAAGAGAGAATCATAAGCCTGTTTTGAG...CTTCACTTGATAGTTCTTTTTAGACTCCTGACAGAAGTGTGTTCTTTTACCAAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
3UTR-3UTR GCA 90 bp TTGCATGACATCATACCCCTTACATATCACACATGTAATTGCCTTTCATTGGGACCTCTCCCTCCACAATaGCATAATCTTTATATCCAA +
Preference number: 2 (lower is better)
Translates to: LHDIIPLTYHTCNCLSLGPLPPQ*HNLYIQ
Trigger: TTGGATATAAAGATTATGGCATTGTGGAGGGAGAGG...TCCCAATGAAAGGCAATTACATGTGTGATATGTAAGGGGTATGATGTCATGCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
3UTR-3UTR GCA 90 bp ATATGTACAAAGGGCTTTTCTATGGATAATGAAAAATTTCCTCACAACCACCCACTTGGGCTCCAGACATaGTTGATGAGGCTGAAATAT +
Preference number: 2 (lower is better)
Translates to: ICTKGFSMDNEKFPHNHPLGLQT*LMRLKY
Trigger: ATATTTCAGCCTCATCAAGCATGTCTGGAGCCCAAG...TGGGTGGTTGTGAGGAAATTTTTCATTATCCATAGAAAAGCCCTTTGTACATAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
3UTR-3UTR GCA 90 bp TTGCATGACATCATACCCCTTACATATCACACATGTAATTGCCTTTCATTGGGACCACCATCTGATACATaGTGTGCAATTATTCTTCTC +
Preference number: 2 (lower is better)
Translates to: LHDIIPLTYHTCNCLSLGPPSDT*CAIILL
Trigger: GAGAAGAATAATTGCACAGCATGTATCAGATGGTGG...TCCCAATGAAAGGCAATTACATGTGTGATATGTAAGGGGTATGATGTCATGCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000121215.2
3UTR-3UTR CCA 90 bp GCAATGAAACCTTTGGATTTTGCTTCAAAGGACCTGAACTCTACACAAACTAGTCAACGCCTAAAGCAATaGATCCTATTTCTTAGAAGC +
Preference number: 2 (lower is better)
Translates to: AMKPLDFASKDLNSTQTSQRLKQ*ILFLRS
Trigger: GCTTCTAAGAAATAGGATCCATTGCTTTAGGCGTTG...ACTAGTTTGTGTAGAGTTCAGGTCCTTTGAAGCAAAATCCAAAGGTTTCATTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
3UTR-3UTR TCA 90 bp AACCAAGCAGACGGGGATGGGATTAAAGTTACAAGAAAGTTACTCTATCTTTTCAAGGGAAGTCACATCTaGAAACAAATCCTTTGTTCA +
Preference number: 2 (lower is better)
Translates to: NQADGDGIKVTRKLLYLFKGSHI*KQILCS
Trigger: TGAACAAAGGATTTGTTTTCAGATGTGACTTCCCTT...GAAAAGATAGAGTAACTTTCTTGTAACTTTAATCCCATCCCCGTCTGCTTGGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
3UTR-3UTR TCA 90 bp CTCTTGTTGCATGACATCATACCCCTTACATATCACACATGTAATTGCCTTTCAAAGGGAAGTCACATCTaGAAACAAATCCTTTGTTCA +
Preference number: 2 (lower is better)
Translates to: LLLHDIIPLTYHTCNCLSKGSHI*KQILCS
Trigger: TGAACAAAGGATTTGTTTTCAGATGTGACTTCCCTT...TGAAAGGCAATTACATGTGTGATATGTAAGGGGTATGATGTCATGCAACAAGAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000121215.2
3UTR-3UTR GCA 90 bp CTTGGTAAAAGAACACACTTCTGTCAGGAGTCTAAAAAGAACTATCAAGTGAAGTTCCAGAATCTGAAATaGAGTATCAAGAAGCAGGGA +
Preference number: 2 (lower is better)
Translates to: LGKRTHFCQESKKNYQVKFQNLK*SIKKQG
Trigger: TCCCTGCTTCTTGATACTGCATTTCAGATTCTGGAA...CTTCACTTGATAGTTCTTTTTAGACTCCTGACAGAAGTGTGTTCTTTTACCAAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
3UTR-3UTR GCA 90 bp ATATGTACAAAGGGCTTTTCTATGGATAATGAAAAATTTCCTCACAACCACCCATATCACACATGTAATTaGCTTTCATTGGGAAAGGAA +
Preference number: 2 (lower is better)
Translates to: ICTKGFSMDNEKFPHNHPYHTCN*LSLGKE
Trigger: TTCCTTTCCCAATGAAAGGCAATTACATGTGTGATA...TGGGTGGTTGTGAGGAAATTTTTCATTATCCATAGAAAAGCCCTTTGTACATAT
34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
3UTR GCA 72 bp TCTTGGGCTCCAGACATGCTTGATGAGGCTGAAATATaGCTCCTTCTTGGCCAACCAAGCAGACGGGGATGG +
Preference number: 3 (lower is better)
Translates to: SWAPDMLDEAEI*LLLGQPSRRGW
Trigger: CCATCCCCGTCTGCTTGGTTGGCCAAGAAGGAGGCATATTTCAGCCTCATCAAGCATGTCTGGAGCCCAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
3UTR GCA 72 bp AGGAACCAAACCCAGGTCCTCTGGAAGAATAACAAGTaGTGTCTACCACTCTCTCTCTATCCCCATCATATG +
Preference number: 3 (lower is better)
Translates to: RNQTQVLWKNNK*CLPLSLYPHHM
Trigger: CATATGATGGGGATAGAGAGAGAGTGGTAGACAGCACTTGTTATTCTTCCAGAGGACCTGGGTTTGGTTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
3UTR-3UTR CAA 90 bp CACATTTGCCTACAAATCATCTATAGCTCCTTCCACATTACAGTCATCGGTGGCAGTATACACCTGGAGTaGCTTATGGCTTCCTGTAGC +
Preference number: 3 (lower is better)
Translates to: HICLQIIYSSFHITVIGGSIHLE*LMASCS
Trigger: GCTACAGGAAGCCATAAGCAACTCCAGGTGTATACT...GCCACCGATGACTGTAATGTGGAAGGAGCTATAGATGATTTGTAGGCAAATGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
3UTR TCA 72 bp TTGCGGTGCTTCCCTCAGGTTTCTTGTTCCAGAATCTaGAATGCAGTATCAAGAAGCAGGGACACTACTAAC +
Preference number: 3 (lower is better)
Translates to: LRCFPQVSCSRI*NAVSRSRDTTN
Trigger: GTTAGTAGTGTCCCTGCTTCTTGATACTGCATTTCAGATTCTGGAACAAGAAACCTGAGGGAAGCACCGCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
3UTR TCA 72 bp ATTCCAAAAGAAATGATTCTAGGCTTCGGGACGCTCTaGTTCCAGAGAAGCATCTGTCAGTATACACCTGGA +
Preference number: 3 (lower is better)
Translates to: IPKEMILGFGTL*FQRSICQYTPG
Trigger: TCCAGGTGTATACTGACAGATGCTTCTCTGGAATCAGAGCGTCCCGAAGCCTAGAATCATTTCTTTTGGAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
3UTR TCA 72 bp CAAGGGGAAACAGTTCACCCTCACACAAATCCCATGTaGACTTACTACAATTTCAGAGTTGACACCTCTTCC +
Preference number: 3 (lower is better)
Translates to: QGETVHPHTNPM*TYYNFRVDTSS
Trigger: GGAAGAGGTGTCAACTCTGAAATTGTAGTAAGTTCACATGGGATTTGTGTGAGGGTGAACTGTTTCCCCTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
3UTR TCA 72 bp TCAGCTTTACTTTTCTCTCAGGCATCAACCACCATCTaGTACATGCTGTGCAATTATTCTTCTCCCCTGCTG +
Preference number: 3 (lower is better)
Translates to: SALLFSQASTTI*YMLCNYSSPLL
Trigger: CAGCAGGGGAGAAGAATAATTGCACAGCATGTATCAGATGGTGGTTGATGCCTGAGAGAAAAGTAAAGCTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000121215.2
3UTR GCA 72 bp GAACTTACTACAATTTCAGAGTTGACACCTCTTCCTTaGGGTGCTTCCCTCAGGTTTCTTGTTCCAGAATCT +
Preference number: 3 (lower is better)
Translates to: ELTTISELTPLP*GASLRFLVPES
Trigger: AGATTCTGGAACAAGAAACCTGAGGGAAGCACCGCAAGGAAGAGGTGTCAACTCTGAAATTGTAGTAAGTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
3UTR CCA 72 bp TCCAGTTTCACCTCACTAAATGCGTCATCTGTGTTCTaGCGGGACCATAAAACAGAAGTGCATTCAAACAGA +
Preference number: 3 (lower is better)
Translates to: SSFTSLNASSVF*RDHKTEVHSNR
Trigger: TCTGTTTGAATGCACTTCTGTTTTATGGTCCCGCCAGAACACAGATGACGCATTTAGTGAGGTGAAACTGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
3UTR TCA 72 bp TTATTTCAGTGTATGCGCTACGTGTTTGGTATAGGCTaGATCATCCCTGAAGCCTTTCCTACATTGACTACC +
Preference number: 3 (lower is better)
Translates to: LFQCMRYVFGIG*IIPEAFPTLTT
Trigger: GGTAGTCAATGTAGGAAAGGCTTCAGGGATGATTCAGCCTATACCAAACACGTAGCGCATACACTGAAATAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000121215.2
3UTR TCA 72 bp TGCAATGAAGCCATTTCTTTAACTGTGTGTGACTCATaGAGACGTTCCATCTCTGACTTGTTCCTCCCTGTA +
Preference number: 3 (lower is better)
Translates to: CNEAISLTVCDS*RRSISDLFLPV
Trigger: TACAGGGAGGAACAAGTCAGAGATGGAACGTCTTCATGAGTCACACACAGTTAAAGAAATGGCTTCATTGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
ENSMUST00000121215.2
3UTR GCA 72 bp CCCCATCATATGATAACCATCTTGCTGTCAAGGGCATaGATACAGAAGACTGAGATGTCTAACTTCCTTATG +
Preference number: 3 (lower is better)
Translates to: PHHMITILLSRA*IQKTEMSNFLM
Trigger: CATAAGGAAGTTAGACATCTCAGTCTTCTGTATGCATGCCCTTGACAGCAAGATGGTTATCATATGATGGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
3UTR-3UTR CAA 90 bp CACATGGTGGAAGGTTTCTCATCCCTAAATCCTAACCTCTTGTTGCATGACATCCTGAAAACAAATCCTTaGTTCACTCAAGGACAGCAT +
Preference number: 3 (lower is better)
Translates to: HMVEGFSSLNPNLLLHDILKTNP*FTQGQH
Trigger: ATGCTGTCCTTGAGTGAACAAAGGATTTGTTTTCAG...GATGTCATGCAACAAGAGGTTAGGATTTAGGGATGAGAAACCTTCCACCATGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000121215.2
3UTR TCA 72 bp ACCACTACGCCTTTATGGAAACAGGAAAGTACAAACTaGCAAAAGTGTCACTCCCAAATAACACTTCCAAGC +
Preference number: 3 (lower is better)
Translates to: TTTPLWKQESTN*QKCHSQITLPS
Trigger: GCTTGGAAGTGTTATTTGGGAGTGACACTTTTGTCAGTTTGTACTTTCCTGTTTCCATAAAGGCGTAGTGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
3UTR GCA 72 bp CTCCTTCCACATTACAGTCATCGGTGGCTGAGTAGTTaGAGCGGAAATGATATTGAACACAGTTTAAAATAC +
Preference number: 3 (lower is better)
Translates to: LLPHYSHRWLSS*SGNDIEHSLKY
Trigger: GTATTTTAAACTGTGTTCAATATCATTTCCGCTGCAACTACTCAGCCACCGATGACTGTAATGTGGAAGGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
3UTR TCA 72 bp CTATTTAAGGGCTGTGTGATTACAGGATACTTGTCCTaGTATTCCATTATACTCTTCTGTCTGTTCCCCAGT +
Preference number: 3 (lower is better)
Translates to: LFKGCVITGYLS*YSIILFCLFPS
Trigger: ACTGGGGAACAGACAGAAGAGTATAATGGAATATCAGGACAAGTATCCTGTAATCACACAGCCCTTAAATAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
3UTR TCA 72 bp CTACTCAACAGTCTTAATCATCTCAAAACAGGCTTATaGTTCTCTCTTCACAGGAACCAAAAGGTAGAAGAC +
Preference number: 3 (lower is better)
Translates to: LLNSLNHLKTGL*FSLHRNQKVED
Trigger: GTCTTCTACCTTTTGGTTCCTGTGAAGAGAGAATCATAAGCCTGTTTTGAGATGATTAAGACTGTTGAGTAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
3UTR GCA 72 bp TCAAGAAGCAGGGACACTACTAACACTAATGGTACATaGATGTTTTACTTGAGAATAACAGACACCAAAGTG +
Preference number: 3 (lower is better)
Translates to: SRSRDTTNTNGT*MFYLRITDTKV
Trigger: CACTTTGGTGTCTGTTATTCTCAAGTAAAACATGCATGTACCATTAGTGTTAGTAGTGTCCCTGCTTCTTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
3UTR GCA 72 bp CATGACATCATACCCCTTACATATCACACATGTAATTaGCTTTCATTGGGAAAGGAAATGAATGATCAAGCT +
Preference number: 3 (lower is better)
Translates to: HDIIPLTYHTCN*LSLGKEMNDQA
Trigger: AGCTTGATCATTCATTTCCTTTCCCAATGAAAGGCAATTACATGTGTGATATGTAAGGGGTATGATGTCATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
ENSMUST00000121215.2
3UTR CCA 72 bp CTCCTAAGCATCTACCCAAGAGTACTGAAAATTTATTaGCACATGAGTTTGTATGTTTTTAGGACAGCACTA +
Preference number: 3 (lower is better)
Translates to: LLSIYPRVLKIY*HMSLYVFRTAL
Trigger: TAGTGCTGTCCTAAAAACATACAAACTCATGTGCCAATAAATTTTCAGTACTCTTGGGTAGATGCTTAGGAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
3UTR-3UTR CAA 90 bp CAAAGGGCTTTTCTATGGATAATGAAAAATTTCCTCACAACCACCCATAATGAACTGAAAACAAATCCTTaGTTCACTCAAGGACAGCAT +
Preference number: 3 (lower is better)
Translates to: QRAFLWIMKNFLTTTHNELKTNP*FTQGQH
Trigger: ATGCTGTCCTTGAGTGAACAAAGGATTTGTTTTCAG...TTCATTATGGGTGGTTGTGAGGAAATTTTTCATTATCCATAGAAAAGCCCTTTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
CDS-3UTR TCA 90 bp GCCTTCCTCGCTGACGGTGCTTTATTTCAGTGTATGCGCTACGTGTTTGGTATAAATATTTTCCCACAGTaGGGACACTGGCTGGGACCC +
Preference number: 4 (lower is better)
Translates to: AFLADGALFQCMRYVFGINIFPQ*GHWLGP
Trigger: GGGTCCCAGCCAGTGTCCTCACTGTGGGAAAATATT...TATACCAAACACGTAGCGCATACACTGAAATAAAGCACCGTCAGCGAGGAAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000121215.2
CDS-3UTR CCA 90 bp GCCTTCCTCGCTGACGGTGCTTTATTTCAGTGTATGCGCTACGTGTTTGGTATAAGTGAGGACACTGGCTaGGACCCTCTCTGTTATGAA +
Preference number: 4 (lower is better)
Translates to: AFLADGALFQCMRYVFGISEDTG*DPLCYE
Trigger: TTCATAACAGAGAGGGTCCCAGCCAGTGTCCTCACT...TATACCAAACACGTAGCGCATACACTGAAATAAAGCACCGTCAGCGAGGAAGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000121215.2
CDS-3UTR TCA 90 bp CCCATCCCCTTTCTCAGCTTTACTTTTCTCTCAGGCATCAACCACCATCTGATAATGCTGAGTGAGGTATaGGCCATCTCGGAAAGCCTT +
Preference number: 4 (lower is better)
Translates to: PIPFLSFTFLSGINHHLIMLSEV*AISESL
Trigger: AAGGCTTTCCGAGATGGCTCATACCTCACTCAGCAT...TATCAGATGGTGGTTGATGCCTGAGAGAAAAGTAAAGCTGAGAAAGGGGATGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000121215.2
CDS-3UTR TCA 90 bp CCCATCCCCTTTCTCAGCTTTACTTTTCTCTCAGGCATCAACCACCATCTGATAAGATGCACAGTAAGGTaGGAAATGTCAGTGAAGGGC +
Preference number: 4 (lower is better)
Translates to: PIPFLSFTFLSGINHHLIRCTVR*EMSVKG
Trigger: GCCCTTCACTGACATTTCTCACCTTACTGTGCATCT...TATCAGATGGTGGTTGATGCCTGAGAGAAAAGTAAAGCTGAGAAAGGGGATGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000121215.2
CDS-3UTR TCA 90 bp CACATGGTGGAAGGTTTCTCATCCCTAAATCCTAACCTCTTGTTGCATGACATCATGCTGAGTGAGGTATaGGCCATCTCGGAAAGCCTT +
Preference number: 4 (lower is better)
Translates to: HMVEGFSSLNPNLLLHDIMLSEV*AISESL
Trigger: AAGGCTTTCCGAGATGGCTCATACCTCACTCAGCAT...GATGTCATGCAACAAGAGGTTAGGATTTAGGGATGAGAAACCTTCCACCATGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000121215.2
CDS-3UTR TCA 90 bp CCCATCCCCTTTCTCAGCTTTACTTTTCTCTCAGGCATCAACCACCATCTGATAATTCTTCTCCCCTGCTaGACTGCAAACACCTTGTTC +
Preference number: 4 (lower is better)
Translates to: PIPFLSFTFLSGINHHLIILLPC*TANTLF
Trigger: GAACAAGGTGTTTGCAGTTCAGCAGGGGAGAAGAAT...TATCAGATGGTGGTTGATGCCTGAGAGAAAAGTAAAGCTGAGAAAGGGGATGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000108546.2
CDS-3UTR CCA 90 bp GCCTTCCTCGCTGACGGTGCTTTATTTCAGTGTATGCGCTACGTGTTTGGTATATTCTTACAAGTTGAGTaGCTTCCATGGAAGGTTGGG +
Preference number: 4 (lower is better)
Translates to: AFLADGALFQCMRYVFGIFLQVE*LPWKVG
Trigger: CCCAACCTTCCATGGAAGCCACTCAACTTGTAAGAA...TATACCAAACACGTAGCGCATACACTGAAATAAAGCACCGTCAGCGAGGAAGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000121215.2
3UTR CAA 72 bp ACTGCACGTACTCCATACAGTTGTACAATTTCAGAGTaGACACCTCTTCCTTGCGGTGCTTCCCTCAGGTTT +
Preference number: 4 (lower is better)
Translates to: TARTPYSCTISE*TPLPCGASLRF
Trigger: AAACCTGAGGGAAGCACCGCAAGGAAGAGGTGTCAACTCTGAAATTGTACAACTGTATGGAGTACGTGCAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121215.2
CDS-3UTR TCA 90 bp TTTCCTGTAAATGGGTTTACCCTTGCACAAAGCTTTGTTCTCCATACCTGTCTCGTGCTGACCCATCACTaGAAGCTTTCCCACACTTAC +
Preference number: 4 (lower is better)
Translates to: FPVNGFTLAQSFVLHTCLVLTHH*KLSHTY
Trigger: GTAAGTGTGGGAAAGCTTTCAGTGATGGGTCAGCAC...GAGACAGGTATGGAGAACAAAGCTTTGTGCAAGGGTAAACCCATTTACAGGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
ENSMUST00000121215.2
3UTR CAA 72 bp GATTCCAGAGAAGCATCTGTCAGTATACACCTGGAGTaGCTTATGGCTTCCTGTAGCCATGATCTAGCCTTT +
Preference number: 4 (lower is better)
Translates to: DSREASVSIHLE*LMASCSHDLAF
Trigger: AAAGGCTAGATCATGGCTACAGGAAGCCATAAGCAACTCCAGGTGTATACTGACAGATGCTTCTCTGGAATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
CDS-3UTR TCA 90 bp GCCTTCCTCGCTGACGGTGCTTTATTTCAGTGTATGCGCTACGTGTTTGGTATAGATATGCACTCTCAATaGAAGTTTTCCCACACTCTT +
Preference number: 4 (lower is better)
Translates to: AFLADGALFQCMRYVFGIDMHSQ*KFSHTL
Trigger: AAGAGTGTGGGAAAACTTTCATTGAGAGTGCATATC...TATACCAAACACGTAGCGCATACACTGAAATAAAGCACCGTCAGCGAGGAAGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000121215.2
CDS-3UTR GCA 90 bp CACATTTGCCTACAAATCATCTATAGCTCCTTCCACATTACAGTCATCGGTGGCGCAAACACCTTGTTCTaGCTTCTGCTACAGTACCAA +
Preference number: 4 (lower is better)
Translates to: HICLQIIYSSFHITVIGGANTLF*LLLQYQ
Trigger: TTGGTACTGTAGCAGAAGGCAGAACAAGGTGTTTGC...GCCACCGATGACTGTAATGTGGAAGGAGCTATAGATGATTTGTAGGCAAATGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108546.2
CDS-3UTR CCA 90 bp CACATGGTGGAAGGTTTCTCATCCCTAAATCCTAACCTCTTGTTGCATGACATCAATTATCACCTAAAATaGGGAAGCAGGGAGCCTCTC +
Preference number: 4 (lower is better)
Translates to: HMVEGFSSLNPNLLLHDINYHLK*GSREPL
Trigger: GAGAGGCTCCCTGCTTCCCCATTTTAGGTGATAATT...GATGTCATGCAACAAGAGGTTAGGATTTAGGGATGAGAAACCTTCCACCATGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
ENSMUST00000121215.2
3UTR CAA 72 bp ACACAAATCCCATGTGAACTTACTACAATTTCAGAGTaGACACCTCTTCCTTGCGGTGCTTCCCTCAGGTTT +
Preference number: 4 (lower is better)
Translates to: TQIPCELTTISE*TPLPCGASLRF
Trigger: AAACCTGAGGGAAGCACCGCAAGGAAGAGGTGTCAACTCTGAAATTGTAGTAAGTTCACATGGGATTTGTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
CDS-3UTR TCA 90 bp TGGACACATCCACACACATTTGCCTACAAATCATCTATAGCTCCTTCCACATTAAGATGCACAGTAAGGTaGGAAATGTCAGTGAAGGGC +
Preference number: 4 (lower is better)
Translates to: WTHPHTFAYKSSIAPSTLRCTVR*EMSVKG
Trigger: GCCCTTCACTGACATTTCTCACCTTACTGTGCATCT...TAATGTGGAAGGAGCTATAGATGATTTGTAGGCAAATGTGTGTGGATGTGTCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
CDS-3UTR TCA 90 bp AAAGATCCAGCAATTCCACTCCTAAGCATCTACCCAAGAGTACTGAAAATTTATAATATTTTCCCACAGTaGGGACACTGGCTGGGACCC +
Preference number: 4 (lower is better)
Translates to: KDPAIPLLSIYPRVLKIYNIFPQ*GHWLGP
Trigger: GGGTCCCAGCCAGTGTCCTCACTGTGGGAAAATATT...ATAAATTTTCAGTACTCTTGGGTAGATGCTTAGGAGTGGAATTGCTGGATCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
CDS-3UTR TCA 90 bp AAAGATCCAGCAATTCCACTCCTAAGCATCTACCCAAGAGTACTGAAAATTTATGTGCTGACCCATCACTaGAAGCTTTCCCACACTTAC +
Preference number: 4 (lower is better)
Translates to: KDPAIPLLSIYPRVLKIYVLTHH*KLSHTY
Trigger: GTAAGTGTGGGAAAGCTTTCAGTGATGGGTCAGCAC...ATAAATTTTCAGTACTCTTGGGTAGATGCTTAGGAGTGGAATTGCTGGATCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
CDS-3UTR TCA 90 bp CTCTTGTTGCATGACATCATACCCCTTACATATCACACATGTAATTGCCTTTCAGTACAATTTCAGAGTTaGCACCTCTTCCTTGCGGTG +
Preference number: 4 (lower is better)
Translates to: LLLHDIIPLTYHTCNCLSVQFQS*HLFLAV
Trigger: CACCGCAAGGAAGAGGTGTCAACTCTGAAATTGTAC...TGAAAGGCAATTACATGTGTGATATGTAAGGGGTATGATGTCATGCAACAAGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108546.2
CDS-3UTR CCA 90 bp TTTTCCTGTAAATGGGTTTACCCTTGCACAAAGCTTTGTTCTCCATACCTGTCTAATTATCACCTAAAATaGGGAAGCAGGGAGCCTCTC +
Preference number: 4 (lower is better)
Translates to: FSCKWVYPCTKLCSPYLSNYHLK*GSREPL
Trigger: GAGAGGCTCCCTGCTTCCCCATTTTAGGTGATAATT...AGACAGGTATGGAGAACAAAGCTTTGTGCAAGGGTAAACCCATTTACAGGAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
ENSMUST00000121215.2
3UTR CAA 72 bp GTGGAAGGTTTCTCATCCCTAAATCCTAACCTCTTGTaGCATGACATCATACCCCTTACATATCACACATGT +
Preference number: 4 (lower is better)
Translates to: VEGFSSLNPNLL*HDIIPLTYHTC
Trigger: ACATGTGTGATATGTAAGGGGTATGATGTCATGCAACAAGAGGTTAGGATTTAGGGATGAGAAACCTTCCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
ENSMUST00000121215.2
3UTR CAA 72 bp ATGGTGGAAGGTTTCTCATCCCTAAATCCTAACCTCTaGTTGCATGACATCATACCCCTTACATATCACACA +
Preference number: 4 (lower is better)
Translates to: MVEGFSSLNPNL*LHDIIPLTYHT
Trigger: TGTGTGATATGTAAGGGGTATGATGTCATGCAACAAGAGGTTAGGATTTAGGGATGAGAAACCTTCCACCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
ENSMUST00000121215.2
CDS-3UTR TCA 90 bp CTCTTGTTGCATGACATCATACCCCTTACATATCACACATGTAATTGCCTTTCATGGTTTCTTACAAGTTaGGTGGCTTCCATGGAAGGT +
Preference number: 4 (lower is better)
Translates to: LLLHDIIPLTYHTCNCLSWFLTS*VASMEG
Trigger: ACCTTCCATGGAAGCCACTCAACTTGTAAGAAACCA...TGAAAGGCAATTACATGTGTGATATGTAAGGGGTATGATGTCATGCAACAAGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
ENSMUST00000121215.2
CDS-3UTR GCA 90 bp CACATGGTGGAAGGTTTCTCATCCCTAAATCCTAACCTCTTGTTGCATGACATCACAATTTGCTTCCTGTaGCTCTGTTTTCTCATCAAT +
Preference number: 4 (lower is better)
Translates to: HMVEGFSSLNPNLLLHDITICFL*LCFLIN
Trigger: ATTGATGAGAAAACAGAGGCACAGGAAGCAAATTGT...GATGTCATGCAACAAGAGGTTAGGATTTAGGGATGAGAAACCTTCCACCATGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
ENSMUST00000121215.2
CDS-3UTR GCA 90 bp CAAAGGGCTTTTCTATGGATAATGAAAAATTTCCTCACAACCACCCATAATGAATTGACACCTCTTCCTTaGGGTGCTTCCCTCAGGTTT +
Preference number: 4 (lower is better)
Translates to: QRAFLWIMKNFLTTTHNELTPLP*GASLRF
Trigger: AAACCTGAGGGAAGCACCGCAAGGAAGAGGTGTCAA...TTCATTATGGGTGGTTGTGAGGAAATTTTTCATTATCCATAGAAAAGCCCTTTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108546.2
CDS-3UTR GCA 90 bp ATATGTACAAAGGGCTTTTCTATGGATAATGAAAAATTTCCTCACAACCACCCATCTCCCCTGCTGAACTaGAAACACCTTGTTCTGCCT +
Preference number: 4 (lower is better)
Translates to: ICTKGFSMDNEKFPHNHPSPLLN*KHLVLP
Trigger: AGGCAGAACAAGGTGTTTGCAGTTCAGCAGGGGAGA...TGGGTGGTTGTGAGGAAATTTTTCATTATCCATAGAAAAGCCCTTTGTACATAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000108546.2
CDS-3UTR CCA 90 bp CTAACCTCTTGTTGCATGACATCATACCCCTTACATATCACACATGTAATTGCCTCCCCCAAATTAACATaGCCACAATTTGCTTCCTGT +
Preference number: 4 (lower is better)
Translates to: LTSCCMTSYPLHITHVIASPKLT*PQFASC
Trigger: ACAGGAAGCAAATTGTGGCCATGTTAATTTGGGGGA...GGCAATTACATGTGTGATATGTAAGGGGTATGATGTCATGCAACAAGAGGTTAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
ENSMUST00000121215.2
CDS-3UTR CCA 90 bp TTGCATGACATCATACCCCTTACATATCACACATGTAATTGCCTTTCATTGGGATTCTTACAAGTTGAGTaGCTTCCATGGAAGGTTGGG +
Preference number: 4 (lower is better)
Translates to: LHDIIPLTYHTCNCLSLGFLQVE*LPWKVG
Trigger: CCCAACCTTCCATGGAAGCCACTCAACTTGTAAGAA...TCCCAATGAAAGGCAATTACATGTGTGATATGTAAGGGGTATGATGTCATGCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
ENSMUST00000121215.2
CDS-3UTR CCA 90 bp AGTCATCGGTGGCTGAGTAGTTGCAGCGGAAATGATATTGAACACAGTTTAAAACTTCAGACACTGGTATaGAGTCTCCTTAGTGTGAAT +
Preference number: 4 (lower is better)
Translates to: SHRWLSSCSGNDIEHSLKLQTLV*SLLSVN
Trigger: ATTCACACTAAGGAGACTCCATACCAGTGTCTGAAG...TTTTAAACTGTGTTCAATATCATTTCCGCTGCAACTACTCAGCCACCGATGACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
CDS-3UTR CCA 90 bp CACATGTCTTATTTTTCCATTGATCTGCAATGTAAAGAATTGGCAAATGCACAGAGTGAGGACACTGGCTaGGACCCTCTCTGTTATGAA +
Preference number: 4 (lower is better)
Translates to: HMSYFSIDLQCKELANAQSEDTG*DPLCYE
Trigger: TTCATAACAGAGAGGGTCCCAGCCAGTGTCCTCACT...CTGTGCATTTGCCAATTCTTTACATTGCAGATCAATGGAAAAATAAGACATGTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
CDS-3UTR TCA 90 bp TTTTCCTGTAAATGGGTTTACCCTTGCACAAAGCTTTGTTCTCCATACCTGTCTGGGATGAATTTCTGTTaGACGTTTTTCCGCAATCTA +
Preference number: 4 (lower is better)
Translates to: FSCKWVYPCTKLCSPYLSGMNFC*TFFRNL
Trigger: TAGATTGCGGAAAAACGTTCAACAGAAATTCATCCC...AGACAGGTATGGAGAACAAAGCTTTGTGCAAGGGTAAACCCATTTACAGGAAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000121215.2
CDS-3UTR TCA 90 bp ATATGTACAAAGGGCTTTTCTATGGATAATGAAAAATTTCCTCACAACCACCCAGTTCCAGAATCTGTGTaGATCCTCTGGTGTTGTGTC +
Preference number: 4 (lower is better)
Translates to: ICTKGFSMDNEKFPHNHPVPESV*ILWCCV
Trigger: GACACAACACCAGAGGATTCACACAGATTCTGGAAC...TGGGTGGTTGTGAGGAAATTTTTCATTATCCATAGAAAAGCCCTTTGTACATAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108546.2
CDS-3UTR GCA 90 bp CACATGGTGGAAGGTTTCTCATCCCTAAATCCTAACCTCTTGTTGCATGACATCTCAATTAAAGGAGATTaGCTCAAATTTCTTTCCTGG +
Preference number: 4 (lower is better)
Translates to: HMVEGFSSLNPNLLLHDISIKGD*LKFLSW
Trigger: CCAGGAAAGAAATTTGAGGCAATCTCCTTTAATTGA...GATGTCATGCAACAAGAGGTTAGGATTTAGGGATGAGAAACCTTCCACCATGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
ENSMUST00000121215.2
CDS-3UTR CCA 90 bp GCAATGAAACCTTTGGATTTTGCTTCAAAGGACCTGAACTCTACACAAACTAGTTCCCCCAAATTAACATaGCCACAATTTGCTTCCTGT +
Preference number: 4 (lower is better)
Translates to: AMKPLDFASKDLNSTQTSSPKLT*PQFASC
Trigger: ACAGGAAGCAAATTGTGGCCATGTTAATTTGGGGGA...ACTAGTTTGTGTAGAGTTCAGGTCCTTTGAAGCAAAATCCAAAGGTTTCATTGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
CDS-3UTR CCA 90 bp TTGCATGACATCATACCCCTTACATATCACACATGTAATTGCCTTTCATTGGGACTTCAGACACTGGTATaGAGTCTCCTTAGTGTGAAT +
Preference number: 4 (lower is better)
Translates to: LHDIIPLTYHTCNCLSLGLQTLV*SLLSVN
Trigger: ATTCACACTAAGGAGACTCCATACCAGTGTCTGAAG...TCCCAATGAAAGGCAATTACATGTGTGATATGTAAGGGGTATGATGTCATGCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000121215.2
3UTR CAA 72 bp GCTATGGAGTGGAAAGGGTTGGTTTACTTAACTTGCTaGGTAAAAGAACACACTTCTGTCAGGAGTCTAAAA +
Preference number: 4 (lower is better)
Translates to: AMEWKGLVYLTC*VKEHTSVRSLK
Trigger: TTTTAGACTCCTGACAGAAGTGTGTTCTTTTACCAAGCAAGTTAAGTAAACCAACCCTTTCCACTCCATAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
CDS-3UTR TCA 90 bp ATATGTACAAAGGGCTTTTCTATGGATAATGAAAAATTTCCTCACAACCACCCATGGTTTCTTACAAGTTaGGTGGCTTCCATGGAAGGT +
Preference number: 4 (lower is better)
Translates to: ICTKGFSMDNEKFPHNHPWFLTS*VASMEG
Trigger: ACCTTCCATGGAAGCCACTCAACTTGTAAGAAACCA...TGGGTGGTTGTGAGGAAATTTTTCATTATCCATAGAAAAGCCCTTTGTACATAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
CDS-3UTR TCA 90 bp CACATGTCTTATTTTTCCATTGATCTGCAATGTAAAGAATTGGCAAATGCACAGTGGTTTCTTACAAGTTaGGTGGCTTCCATGGAAGGT +
Preference number: 4 (lower is better)
Translates to: HMSYFSIDLQCKELANAQWFLTS*VASMEG
Trigger: ACCTTCCATGGAAGCCACTCAACTTGTAAGAAACCA...CTGTGCATTTGCCAATTCTTTACATTGCAGATCAATGGAAAAATAAGACATGTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
CDS-3UTR TCA 90 bp CTCTTGTTGCATGACATCATACCCCTTACATATCACACATGTAATTGCCTTTCAGGGATGAATTTCTGTTaGACGTTTTTCCGCAATCTA +
Preference number: 4 (lower is better)
Translates to: LLLHDIIPLTYHTCNCLSGMNFC*TFFRNL
Trigger: TAGATTGCGGAAAAACGTTCAACAGAAATTCATCCC...TGAAAGGCAATTACATGTGTGATATGTAAGGGGTATGATGTCATGCAACAAGAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000121215.2
CDS-3UTR CCA 90 bp ATATGTACAAAGGGCTTTTCTATGGATAATGAAAAATTTCCTCACAACCACCCAAATTATCACCTAAAATaGGGAAGCAGGGAGCCTCTC +
Preference number: 4 (lower is better)
Translates to: ICTKGFSMDNEKFPHNHPNYHLK*GSREPL
Trigger: GAGAGGCTCCCTGCTTCCCCATTTTAGGTGATAATT...TGGGTGGTTGTGAGGAAATTTTTCATTATCCATAGAAAAGCCCTTTGTACATAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
CDS-3UTR CCA 90 bp AAAGATCCAGCAATTCCACTCCTAAGCATCTACCCAAGAGTACTGAAAATTTATTCCCCCAAATTAACATaGCCACAATTTGCTTCCTGT +
Preference number: 4 (lower is better)
Translates to: KDPAIPLLSIYPRVLKIYSPKLT*PQFASC
Trigger: ACAGGAAGCAAATTGTGGCCATGTTAATTTGGGGGA...ATAAATTTTCAGTACTCTTGGGTAGATGCTTAGGAGTGGAATTGCTGGATCTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
CDS-3UTR CCA 90 bp CAAAGGGCTTTTCTATGGATAATGAAAAATTTCCTCACAACCACCCATAATGAATTCTTACAAGTTGAGTaGCTTCCATGGAAGGTTGGG +
Preference number: 4 (lower is better)
Translates to: QRAFLWIMKNFLTTTHNEFLQVE*LPWKVG
Trigger: CCCAACCTTCCATGGAAGCCACTCAACTTGTAAGAA...TTCATTATGGGTGGTTGTGAGGAAATTTTTCATTATCCATAGAAAAGCCCTTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
CDS-3UTR GCA 90 bp TTTTCCTGTAAATGGGTTTACCCTTGCACAAAGCTTTGTTCTCCATACCTGTCTTCAATTAAAGGAGATTaGCTCAAATTTCTTTCCTGG +
Preference number: 4 (lower is better)
Translates to: FSCKWVYPCTKLCSPYLSSIKGD*LKFLSW
Trigger: CCAGGAAAGAAATTTGAGGCAATCTCCTTTAATTGA...AGACAGGTATGGAGAACAAAGCTTTGTGCAAGGGTAAACCCATTTACAGGAAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
ENSMUST00000121215.2
CDS-3UTR GCA 90 bp TTGCATGACATCATACCCCTTACATATCACACATGTAATTGCCTTTCATTGGGAACAATTTGCTTCCTGTaGCTCTGTTTTCTCATCAAT +
Preference number: 4 (lower is better)
Translates to: LHDIIPLTYHTCNCLSLGTICFL*LCFLIN
Trigger: ATTGATGAGAAAACAGAGGCACAGGAAGCAAATTGT...TCCCAATGAAAGGCAATTACATGTGTGATATGTAAGGGGTATGATGTCATGCAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
ENSMUST00000121215.2
CDS-3UTR CCA 90 bp GCAATGAAACCTTTGGATTTTGCTTCAAAGGACCTGAACTCTACACAAACTAGTCTCAAATTTCTTTCCTaGTTCTCACAGTCCCAATTA +
Preference number: 4 (lower is better)
Translates to: AMKPLDFASKDLNSTQTSLKFLS*FSQSQL
Trigger: TAATTGGGACTGTGAGAACCAGGAAAGAAATTTGAG...ACTAGTTTGTGTAGAGTTCAGGTCCTTTGAAGCAAAATCCAAAGGTTTCATTGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072222.8
CDS-3UTR CCA 90 bp TTTTCCTGTAAATGGGTTTACCCTTGCACAAAGCTTTGTTCTCCATACCTGTCTTCAAGTTGTAGTTCTTaGAGAATGATTTTCCGCAAT +
Preference number: 4 (lower is better)
Translates to: FSCKWVYPCTKLCSPYLSSSCSS*RMIFRN
Trigger: ATTGCGGAAAATCATTCTCCAAGAACTACAACTTGA...AGACAGGTATGGAGAACAAAGCTTTGTGCAAGGGTAAACCCATTTACAGGAAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
ENSMUST00000121215.2
CDS-3UTR CCA 90 bp AGTCATCGGTGGCTGAGTAGTTGCAGCGGAAATGATATTGAACACAGTTTAAAATCAAGTTGTAGTTCTTaGAGAATGATTTTCCGCAAT +
Preference number: 4 (lower is better)
Translates to: SHRWLSSCSGNDIEHSLKSSCSS*RMIFRN
Trigger: ATTGCGGAAAATCATTCTCCAAGAACTACAACTTGA...TTTTAAACTGTGTTCAATATCATTTCCGCTGCAACTACTCAGCCACCGATGACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
CDS-3UTR CCA 90 bp CTAACCTCTTGTTGCATGACATCATACCCCTTACATATCACACATGTAATTGCCTCAAGTTGTAGTTCTTaGAGAATGATTTTCCGCAAT +
Preference number: 4 (lower is better)
Translates to: LTSCCMTSYPLHITHVIASSCSS*RMIFRN
Trigger: ATTGCGGAAAATCATTCTCCAAGAACTACAACTTGA...GGCAATTACATGTGTGATATGTAAGGGGTATGATGTCATGCAACAAGAGGTTAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
ENSMUST00000121215.2
CDS-3UTR TCA 90 bp TATATAAAGAATTCTTTTCTGCGAGCAAGGGAAGTCACATCTGAAAACAAATCCGATATGCACTCTCAATaGAAGTTTTCCCACACTCTT +
Preference number: 4 (lower is better)
Translates to: YIKNSFLRAREVTSENKSDMHSQ*KFSHTL
Trigger: AAGAGTGTGGGAAAACTTTCATTGAGAGTGCATATC...GGATTTGTTTTCAGATGTGACTTCCCTTGCTCGCAGAAAAGAATTCTTTATATA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000121215.2
CDS-3UTR CCA 90 bp TATGTACAAAGGGCTTTTCTATGGATAATGAAAAATTTCCTCACAACCACCCATCTCAAATTTCTTTCCTaGTTCTCACAGTCCCAATTA +
Preference number: 4 (lower is better)
Translates to: YVQRAFLWIMKNFLTTTHLKFLS*FSQSQL
Trigger: TAATTGGGACTGTGAGAACCAGGAAAGAAATTTGAG...ATGGGTGGTTGTGAGGAAATTTTTCATTATCCATAGAAAAGCCCTTTGTACATA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
3UTR CAA 72 bp ATGAAGTTACAAAGGGCCACATGTCTTATTTTTCCATaGATCTGCAATGTAAAGAATTGGCAAATGCACAGT +
Preference number: 4 (lower is better)
Translates to: MKLQRATCLIFP*ICNVKNWQMHS
Trigger: ACTGTGCATTTGCCAATTCTTTACATTGCAGATCAATGGAAAAATAAGACATGTGGCCCTTTGTAACTTCAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
3UTR CAA 72 bp TACCCAAGAGTACTGAAAATTTATTGGCACATGAGTTaGTATGTTTTTAGGACAGCACTATTCTTAGTAGCC +
Preference number: 4 (lower is better)
Translates to: YPRVLKIYWHMS*YVFRTALFLVA
Trigger: GGCTACTAAGAATAGTGCTGTCCTAAAAACATACAAACTCATGTGCCAATAAATTTTCAGTACTCTTGGGTA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
CDS-3UTR GCA 90 bp TATGTACAAAGGGCTTTTCTATGGATAATGAAAAATTTCCTCACAACCACCCATTCAATTAAAGGAGATTaGCTCAAATTTCTTTCCTGG +
Preference number: 4 (lower is better)
Translates to: YVQRAFLWIMKNFLTTTHSIKGD*LKFLSW
Trigger: CCAGGAAAGAAATTTGAGGCAATCTCCTTTAATTGA...ATGGGTGGTTGTGAGGAAATTTTTCATTATCCATAGAAAAGCCCTTTGTACATA
34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
CDS TCA 90 bp CTTCCTTGCGGTGCTTCCCTCAGGTTTCTTGTTCCAGAATCTGTGTaGATCCTCTGGTGTTGTGTCAGTGCTGACCCATCACTGAAAGCT +
Preference number: 5 (lower is better)
Translates to: LPCGASLRFLVPESV*ILWCCVSADPSLKA
Trigger: AGCTTTCAGTGATGGGTCAGCACTGACACAACACCAGAGGATTCACACAGATTCTGGAACAAGAAACCTGAGGGAAGCACCGCAAGGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108546.2
CDS CCA 90 bp AGGATTTCTCTCTCATTTGGTTTCTTACAAGTTGAGTGGCTTCCATaGAAGGTTGGGTGGCTTTCTCACAAGCATCGCCGTCAGCAGTTC +
Preference number: 5 (lower is better)
Translates to: RISLSFGFLQVEWLP*KVGWLSHKHRRQQF
Trigger: GAACTGCTGACGGCGATGCTTGTGAGAAAGCCACCCAACCTTCCATGGAAGCCACTCAACTTGTAAGAAACCAAATGAGAGAGAAATCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
ENSMUST00000121215.2
CDS-3UTR CAA 90 bp CTCCTTCCACATTACAGTCATCGGTGGCTGAGTAGTTGCAGCGGAAATGATATTAGAGAGGAGTTCCGTTaGAAGCACTTGCCACATTCG +
Preference number: 5 (lower is better)
Translates to: LLPHYSHRWLSSCSGNDIREEFR*KHLPHS
Trigger: CGAATGTGGCAAGTGCTTCAAACGGAACTCCTCTCT...AATATCATTTCCGCTGCAACTACTCAGCCACCGATGACTGTAATGTGGAAGGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
CDS-3UTR CAA 90 bp TTTCCTGTAAATGGGTTTACCCTTGCACAAAGCTTTGTTCTCCATACCTGTCTCGTTGACACCTCTTCCTaGCGGTGCTTCCCTCAGGTT +
Preference number: 5 (lower is better)
Translates to: FPVNGFTLAQSFVLHTCLVDTSS*RCFPQV
Trigger: AACCTGAGGGAAGCACCGCAAGGAAGAGGTGTCAAC...GAGACAGGTATGGAGAACAAAGCTTTGTGCAAGGGTAAACCCATTTACAGGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108546.2
CDS-3UTR CAA 90 bp CACATTTGCCTACAAATCATCTATAGCTCCTTCCACATTACAGTCATCGGTGGCAAACATGGAAGCCGTTaGTCCCAGGAACTCTCTGAG +
Preference number: 5 (lower is better)
Translates to: HICLQIIYSSFHITVIGGKHGSR*SQELSE
Trigger: CTCAGAGAGTTCCTGGGACAAACGGCTTCCATGTTT...GCCACCGATGACTGTAATGTGGAAGGAGCTATAGATGATTTGTAGGCAAATGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
CDS TCA 90 bp ATATCTGAGTTAAAAACATGGAAGCCGTTTGTCCCAGGAACTCTCTaGGAGGGTAGAAGGGCTGGATTTGTACTCAAATGCTCCCCCAAA +
Preference number: 5 (lower is better)
Translates to: ISELKTWKPFVPGTL*EGRRAGFVLKCSPK
Trigger: TTTGGGGGAGCATTTGAGTACAAATCCAGCCCTTCTACCCTCTCAGAGAGTTCCTGGGACAAACGGCTTCCATGTTTTTAACTCAGATAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
ENSMUST00000121215.2
CDS GCA 90 bp TCCATACAGTTGTACAATTTCAGAGTTGACACCTCTTCCTTGCGGTaGTTCCCTCAGGTTTCTTGTTCCAGAATCTGTGTGAATCCTCTG +
Preference number: 5 (lower is better)
Translates to: SIQLYNFRVDTSSLR*FPQVSCSRICVNPL
Trigger: CAGAGGATTCACACAGATTCTGGAACAAGAAACCTGAGGGAAGCACCGCAAGGAAGAGGTGTCAACTCTGAAATTGTACAACTGTATGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108546.2
CDS-3UTR CAA 90 bp CTCCTTCCACATTACAGTCATCGGTGGCTGAGTAGTTGCAGCGGAAATGATATTTGTACAATTTCAGAGTaGACACCTCTTCCTTGCGGT +
Preference number: 5 (lower is better)
Translates to: LLPHYSHRWLSSCSGNDICTISE*TPLPCG
Trigger: ACCGCAAGGAAGAGGTGTCAACTCTGAAATTGTACA...AATATCATTTCCGCTGCAACTACTCAGCCACCGATGACTGTAATGTGGAAGGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108546.2
CDS-3UTR CAA 90 bp AAAGATCCAGCAATTCCACTCCTAAGCATCTACCCAAGAGTACTGAAAATTTATGGCTTCCATGGAAGGTaGGGTGGCTTTCTCACAAGC +
Preference number: 5 (lower is better)
Translates to: KDPAIPLLSIYPRVLKIYGFHGR*GGFLTS
Trigger: GCTTGTGAGAAAGCCACCCAACCTTCCATGGAAGCC...ATAAATTTTCAGTACTCTTGGGTAGATGCTTAGGAGTGGAATTGCTGGATCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
CDS-3UTR CAA 90 bp TTTTCCTGTAAATGGGTTTACCCTTGCACAAAGCTTTGTTCTCCATACCTGTCTAGAGAGGAGTTCCGTTaGAAGCACTTGCCACATTCG +
Preference number: 5 (lower is better)
Translates to: FSCKWVYPCTKLCSPYLSREEFR*KHLPHS
Trigger: CGAATGTGGCAAGTGCTTCAAACGGAACTCCTCTCT...AGACAGGTATGGAGAACAAAGCTTTGTGCAAGGGTAAACCCATTTACAGGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
ENSMUST00000121215.2
CDS-3UTR CAA 90 bp TTGCATGACATCATACCCCTTACATATCACACATGTAATTGCCTTTCATTGGGAAAACATGGAAGCCGTTaGTCCCAGGAACTCTCTGAG +
Preference number: 5 (lower is better)
Translates to: LHDIIPLTYHTCNCLSLGKHGSR*SQELSE
Trigger: CTCAGAGAGTTCCTGGGACAAACGGCTTCCATGTTT...TCCCAATGAAAGGCAATTACATGTGTGATATGTAAGGGGTATGATGTCATGCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
ENSMUST00000121215.2
CDS-3UTR CAA 90 bp CACATGTCTTATTTTTCCATTGATCTGCAATGTAAAGAATTGGCAAATGCACAGGGCTTCCATGGAAGGTaGGGTGGCTTTCTCACAAGC +
Preference number: 5 (lower is better)
Translates to: HMSYFSIDLQCKELANAQGFHGR*GGFLTS
Trigger: GCTTGTGAGAAAGCCACCCAACCTTCCATGGAAGCC...CTGTGCATTTGCCAATTCTTTACATTGCAGATCAATGGAAAAATAAGACATGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
CDS-3UTR CAA 90 bp AGCAAACAAAGATCCAGCAATTCCACTCCTAAGCATCTACCCAAGAGTACTGAACTTCCCTCAGGTTTCTaGTTCCAGAATCTGTGTGAA +
Preference number: 5 (lower is better)
Translates to: SKQRSSNSTPKHLPKSTELPSGF*FQNLCE
Trigger: TTCACACAGATTCTGGAACAAGAAACCTGAGGGAAG...TTCAGTACTCTTGGGTAGATGCTTAGGAGTGGAATTGCTGGATCTTTGTTTGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108546.2
CDS-3UTR CAA 90 bp CCCATCCCCTTTCTCAGCTTTACTTTTCTCTCAGGCATCAACCACCATCTGATAGGATTTCTCTCTCATTaGGTTTCTTACAAGTTGAGT +
Preference number: 5 (lower is better)
Translates to: PIPFLSFTFLSGINHHLIGFLSH*VSYKLS
Trigger: ACTCAACTTGTAAGAAACCAAATGAGAGAGAAATCC...TATCAGATGGTGGTTGATGCCTGAGAGAAAAGTAAAGCTGAGAAAGGGGATGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
ENSMUST00000121215.2
CDS-3UTR CAA 90 bp TATATAAAGAATTCTTTTCTGCGAGCAAGGGAAGTCACATCTGAAAACAAATCCAAACATGGAAGCCGTTaGTCCCAGGAACTCTCTGAG +
Preference number: 5 (lower is better)
Translates to: YIKNSFLRAREVTSENKSKHGSR*SQELSE
Trigger: CTCAGAGAGTTCCTGGGACAAACGGCTTCCATGTTT...GGATTTGTTTTCAGATGTGACTTCCCTTGCTCGCAGAAAAGAATTCTTTATATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000121215.2
CDS-3UTR CAA 90 bp TATATAAAGAATTCTTTTCTGCGAGCAAGGGAAGTCACATCTGAAAACAAATCCAGAGAGGAGTTCCGTTaGAAGCACTTGCCACATTCG +
Preference number: 5 (lower is better)
Translates to: YIKNSFLRAREVTSENKSREEFR*KHLPHS
Trigger: CGAATGTGGCAAGTGCTTCAAACGGAACTCCTCTCT...GGATTTGTTTTCAGATGTGACTTCCCTTGCTCGCAGAAAAGAATTCTTTATATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000121215.2
CDS-3UTR CAA 90 bp CTTTTCTGCGAGCAAGGGAAGTCACATCTGAAAACAAATCCTTTGTTCACTCAAGGATTTCTCTCTCATTaGGTTTCTTACAAGTTGAGT +
Preference number: 5 (lower is better)
Translates to: LFCEQGKSHLKTNPLFTQGFLSH*VSYKLS
Trigger: ACTCAACTTGTAAGAAACCAAATGAGAGAGAAATCC...TTGAGTGAACAAAGGATTTGTTTTCAGATGTGACTTCCCTTGCTCGCAGAAAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000121215.2
CDS-3UTR CAA 90 bp CACATGTCTTATTTTTCCATTGATCTGCAATGTAAAGAATTGGCAAATGCACAGGGATTTCTCTCTCATTaGGTTTCTTACAAGTTGAGT +
Preference number: 5 (lower is better)
Translates to: HMSYFSIDLQCKELANAQGFLSH*VSYKLS
Trigger: ACTCAACTTGTAAGAAACCAAATGAGAGAGAAATCC...CTGTGCATTTGCCAATTCTTTACATTGCAGATCAATGGAAAAATAAGACATGTG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
CDS CCA 72 bp TTCTTACAAGTTGAGTGGCTTCCATGGAAGGTTGGGTaGCTTTCTCACAAGCATCGCCGTCAGCAGTTCCCT +
Preference number: 6 (lower is better)
Translates to: FLQVEWLPWKVG*LSHKHRRQQFP
Trigger: AGGGAACTGCTGACGGCGATGCTTGTGAGAAAGCCACCCAACCTTCCATGGAAGCCACTCAACTTGTAAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
ENSMUST00000121215.2
CDS CAA 72 bp TTGGTTTCTTACAAGTTGAGTGGCTTCCATGGAAGGTaGGGTGGCTTTCTCACAAGCATCGCCGTCAGCAGT +
Preference number: 6 (lower is better)
Translates to: LVSYKLSGFHGR*GGFLTSIAVSS
Trigger: ACTGCTGACGGCGATGCTTGTGAGAAAGCCACCCAACCTTCCATGGAAGCCACTCAACTTGTAAGAAACCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
ENSMUST00000121215.2
CDS CAA 90 bp CTCTCTCATTTGGTTTCTTACAAGTTGAGTGGCTTCCATGGAAGGTaGGGTGGCTTTCTCACAAGCATCGCCGTCAGCAGTTCCCTTAAC +
Preference number: 6 (lower is better)
Translates to: LSHLVSYKLSGFHGR*GGFLTSIAVSSSLN
Trigger: GTTAAGGGAACTGCTGACGGCGATGCTTGTGAGAAAGCCACCCAACCTTCCATGGAAGCCACTCAACTTGTAAGAAACCAAATGAGAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
ENSMUST00000121215.2
CDS CCA 72 bp CTCTCATTTGGTTTCTTACAAGTTGAGTGGCTTCCATaGAAGGTTGGGTGGCTTTCTCACAAGCATCGCCGT +
Preference number: 6 (lower is better)
Translates to: LSFGFLQVEWLP*KVGWLSHKHRR
Trigger: ACGGCGATGCTTGTGAGAAAGCCACCCAACCTTCCATGGAAGCCACTCAACTTGTAAGAAACCAAATGAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
ENSMUST00000121215.2
CDS TCA 72 bp TTAAAAACATGGAAGCCGTTTGTCCCAGGAACTCTCTaGGAGGGTAGAAGGGCTGGATTTGTACTCAAATGC +
Preference number: 6 (lower is better)
Translates to: LKTWKPFVPGTL*EGRRAGFVLKC
Trigger: GCATTTGAGTACAAATCCAGCCCTTCTACCCTCTCAGAGAGTTCCTGGGACAAACGGCTTCCATGTTTTTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000072222.8
ENSMUST00000108546.2
ENSMUST00000121215.2