Pregenerated sensors for ZFP322A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000046351Ensembl transcript IDs: ENSMUST00000050101.9
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CGCTCCTCTACTTTCTCTGGCTTACAACTTGCCCCCTATTCCTTCTaGTCTAAGCCAGCTGTTAAAGTATCTATCACTGAAAGAGATGAA | + |
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Preference number: 1 (lower is better) Translates to: RSSTFSGLQLAPYSF*SKPAVKVSITERDE Trigger: TTCATCTCTTTCAGTGATAGATACTTTAACAGCTGGCTTAGAGCAGAAGGAATAGGGGGCAAGTTGTAAGCCAGAGAAAGTAGAGGAGCG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050101.9 |
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| 3UTR GCA 90 bp | AAGAAACGCACAGGAAAACCAAACAGGAAGCAAAACTCAAAGCACTaGTTTCTTCCAACAATAAACCACACCCTACTTATACACAAGATT | + |
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Preference number: 1 (lower is better) Translates to: KKRTGKPNRKQNSKH*FLPTINHTLLIHKI Trigger: AATCTTGTGTATAAGTAGGGTGTGGTTTATTGTTGGAAGAAAGCAGTGCTTTGAGTTTTGCTTCCTGTTTGGTTTTCCTGTGCGTTTCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050101.9 |
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| 3UTR CCA 90 bp | TTAAGTCAAAGAAAGCAAATGAGAAGTGACCATTTGACAAATGCTTaGGTCATGAGCTATCCAAAGAGTGTGAAAGACAATCAGTTACCC | + |
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Preference number: 1 (lower is better) Translates to: LSQRKQMRSDHLTNA*VMSYPKSVKDNQLP Trigger: GGGTAACTGATTGTCTTTCACACTCTTTGGATAGCTCATGACCCAAGCATTTGTCAAATGGTCACTTCTCATTTGCTTTCTTTGACTTAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050101.9 |
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| 3UTR-3UTR GCA 90 bp | CTCAAAGCACTGCTTTCTTCCAACAATAAACCACACCCTACTTATACACAAGATAGATCCACGCTGACCTaGCCCGGCTCCTCCAGAACA | + |
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Preference number: 2 (lower is better) Translates to: LKALLSSNNKPHPTYTQDRSTLT*PGSSRT Trigger: TGTTCTGGAGGAGCCGGGGCAGGTCAGCGTGGATCT...ATCTTGTGTATAAGTAGGGTGTGGTTTATTGTTGGAAGAAAGCAGTGCTTTGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050101.9 |
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| 3UTR CAA 90 bp | GAATCTTGTGATGGTTTTCCAAAACCCAGAGCATTTGTGGAGTTCTaGGCAACTGTGGCTAATAAAGGTGTCCTGACAGGGCCACTCTCT | + |
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Preference number: 2 (lower is better) Translates to: ESCDGFPKPRAFVEF*ATVANKGVLTGPLS Trigger: AGAGAGTGGCCCTGTCAGGACACCTTTATTAGCCACAGTTGCCAAGAACTCCACAAATGCTCTGGGTTTTGGAAAACCATCACAAGATTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050101.9 |
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| 3UTR CAA 90 bp | GTACTGCCAATACAAAACATTTACATGGTTGTTCTCTGGTGTGACTaGTCTTGTAAAAATGAGGACTTAACCCTGCTGGAGAGCTCGCAT | + |
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Preference number: 2 (lower is better) Translates to: VLPIQNIYMVVLWCD*SCKNEDLTLLESSH Trigger: ATGCGAGCTCTCCAGCAGGGTTAAGTCCTCATTTTTACAAGACAAGTCACACCAGAGAACAACCATGTAAATGTTTTGTATTGGCAGTAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000050101.9 |
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| 3UTR-3UTR TCA 90 bp | GCCCTCTTCTGGTGTCTGAAGACAGCTACAGTGTACTTATGTATAATAATAAATCCAGTATGGCTTGTCTaGGAGGTAAGGAAGTCAGAG | + |
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Preference number: 2 (lower is better) Translates to: ALFWCLKTATVYLCIIINPVWLV*EVRKSE Trigger: CTCTGACTTCCTTACCTCTCAGACAAGCCATACTGG...ATTTATTATTATACATAAGTACACTGTAGCTGTCTTCAGACACCAGAAGAGGGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050101.9 |
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| 3UTR-3UTR GCA 90 bp | CTGTTTGAGGAATGGTCCACTATTAAGGTAATTTCAGACTATAGACAATTCCCACTCTGGCTTACAACTTaGCCCCTATTCCTTCTGCTC | + |
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Preference number: 2 (lower is better) Translates to: LFEEWSTIKVISDYRQFPLWLTT*PLFLLL Trigger: GAGCAGAAGGAATAGGGGGCAAGTTGTAAGCCAGAG...TGGGAATTGTCTATAGTCTGAAATTACCTTAATAGTGGACCATTCCTCAAACAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050101.9 |
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| 3UTR-3UTR TCA 90 bp | CTGTTTGAGGAATGGTCCACTATTAAGGTAATTTCAGACTATAGACAATTCCCACTCTCTGAACTCCAATaGAGTCTGAGATCTAAGGGA | + |
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Preference number: 2 (lower is better) Translates to: LFEEWSTIKVISDYRQFPLSELQ*SLRSKG Trigger: TCCCTTAGATCTCAGACTTCATTGGAGTTCAGAGAG...TGGGAATTGTCTATAGTCTGAAATTACCTTAATAGTGGACCATTCCTCAAACAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050101.9 |
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| 3UTR-3UTR TCA 90 bp | CTGTTTGAGGAATGGTCCACTATTAAGGTAATTTCAGACTATAGACAATTCCCAAACCAGATTCTTTACTaGGCTAAATTCACTGGCCTC | + |
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Preference number: 2 (lower is better) Translates to: LFEEWSTIKVISDYRQFPNQILY*AKFTGL Trigger: GAGGCCAGTGAATTTAGCTCAGTAAAGAATCTGGTT...TGGGAATTGTCTATAGTCTGAAATTACCTTAATAGTGGACCATTCCTCAAACAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050101.9 |
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| 3UTR-3UTR CCA 90 bp | CTCAAAGCACTGCTTTCTTCCAACAATAAACCACACCCTACTTATACACAAGATTTTCATCTAGGAGGATaGAAACCCAAGTATGACTCT | + |
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Preference number: 2 (lower is better) Translates to: LKALLSSNNKPHPTYTQDFHLGG*KPKYDS Trigger: AGAGTCATACTTGGGTTTCCATCCTCCTAGATGAAA...ATCTTGTGTATAAGTAGGGTGTGGTTTATTGTTGGAAGAAAGCAGTGCTTTGAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050101.9 |
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| 3UTR-3UTR TCA 90 bp | GCCCTCTTCTGGTGTCTGAAGACAGCTACAGTGTACTTATGTATAATAATAAATATGGAAACCCAAGTATaGCTCTCCAACACATGTTTT | + |
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Preference number: 2 (lower is better) Translates to: ALFWCLKTATVYLCIIINMETQV*LSNTCF Trigger: AAAACATGTGTTGGAGAGTCATACTTGGGTTTCCAT...ATTTATTATTATACATAAGTACACTGTAGCTGTCTTCAGACACCAGAAGAGGGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050101.9 |
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| 3UTR-3UTR CCA 90 bp | CTCAAAGCACTGCTTTCTTCCAACAATAAACCACACCCTACTTATACACAAGATTACATGGTTGTTCTCTaGTGTGACTTGTCTTGTAAA | + |
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Preference number: 2 (lower is better) Translates to: LKALLSSNNKPHPTYTQDYMVVL*CDLSCK Trigger: TTTACAAGACAAGTCACACCAGAGAACAACCATGTA...ATCTTGTGTATAAGTAGGGTGTGGTTTATTGTTGGAAGAAAGCAGTGCTTTGAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050101.9 |
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| 3UTR-3UTR TCA 90 bp | CTGTTTGAGGAATGGTCCACTATTAAGGTAATTTCAGACTATAGACAATTCCCAGATCTAAGGGAAATCTaGAATTTACCTAGGAGTCTT | + |
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Preference number: 2 (lower is better) Translates to: LFEEWSTIKVISDYRQFPDLREI*NLPRSL Trigger: AAGACTCCTAGGTAAATTTCAGATTTCCCTTAGATC...TGGGAATTGTCTATAGTCTGAAATTACCTTAATAGTGGACCATTCCTCAAACAG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050101.9 |
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| 3UTR-3UTR GCA 90 bp | CTGTTTGAGGAATGGTCCACTATTAAGGTAATTTCAGACTATAGACAATTCCCAGTTTCTCTATTAAAATaGTTCATTGGGCTAGCGAGA | + |
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Preference number: 2 (lower is better) Translates to: LFEEWSTIKVISDYRQFPVSLLK*FIGLAR Trigger: TCTCGCTAGCCCAATGAAGCATTTTAATAGAGAAAC...TGGGAATTGTCTATAGTCTGAAATTACCTTAATAGTGGACCATTCCTCAAACAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050101.9 |
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| 3UTR-3UTR CCA 90 bp | GCCCTCTTCTGGTGTCTGAAGACAGCTACAGTGTACTTATGTATAATAATAAATTCCAGAACAAGCTTTTaGGTTGCTAGGACATTATTT | + |
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Preference number: 2 (lower is better) Translates to: ALFWCLKTATVYLCIIINSRTSF*VARTLF Trigger: AAATAATGTCCTAGCAACCCAAAAGCTTGTTCTGGA...ATTTATTATTATACATAAGTACACTGTAGCTGTCTTCAGACACCAGAAGAGGGC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050101.9 |
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| 3UTR-3UTR GCA 90 bp | CTGTTTGAGGAATGGTCCACTATTAAGGTAATTTCAGACTATAGACAATTCCCACACTGTCTGAAGTACTaGCAATACAAAACATTTACA | + |
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Preference number: 2 (lower is better) Translates to: LFEEWSTIKVISDYRQFPHCLKY*QYKTFT Trigger: TGTAAATGTTTTGTATTGGCAGTACTTCAGACAGTG...TGGGAATTGTCTATAGTCTGAAATTACCTTAATAGTGGACCATTCCTCAAACAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050101.9 |
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| 3UTR-3UTR GCA 90 bp | GCCCTCTTCTGGTGTCTGAAGACAGCTACAGTGTACTTATGTATAATAATAAATCAAAACTCAAAGCACTaGTTTCTTCCAACAATAAAC | + |
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Preference number: 2 (lower is better) Translates to: ALFWCLKTATVYLCIIINQNSKH*FLPTIN Trigger: GTTTATTGTTGGAAGAAAGCAGTGCTTTGAGTTTTG...ATTTATTATTATACATAAGTACACTGTAGCTGTCTTCAGACACCAGAAGAGGGC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050101.9 |
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| 3UTR TCA 72 bp | TGGAGTTCTTGGCAACTGTGGCTAATAAAGGTGTCCTaGCAGGGCCACTCTCTGCATTTAAACTTTTCTTAC | + |
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Preference number: 3 (lower is better) Translates to: WSSWQLWLIKVS*QGHSLHLNFSY Trigger: GTAAGAAAAGTTTAAATGCAGAGAGTGGCCCTGTCAGGACACCTTTATTAGCCACAGTTGCCAAGAACTCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050101.9 |
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| 3UTR CCA 72 bp | GTTTCTCTATTAAAATGCTTCATTGGGCTAGCGAGATaGCTCAGTGGTAAGACCACTGACTGCTCTTCCAAA | + |
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Preference number: 3 (lower is better) Translates to: VSLLKCFIGLAR*LSGKTTDCSSK Trigger: TTTGGAAGAGCAGTCAGTGGTCTTACCACTGAGCCATCTCGCTAGCCCAATGAAGCATTTTAATAGAGAAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050101.9 |
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| 3UTR TCA 72 bp | CAACCCCTTCTTACTACAGTTAAAAGGCCTCAGGCCTaGTTTACATCCTCAAAGTTCTGTTTGAGGAATGGT | + |
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Preference number: 3 (lower is better) Translates to: QPLLTTVKRPQA*FTSSKFCLRNG Trigger: ACCATTCCTCAAACAGAACTTTGAGGATGTAAATCAGGCCTGAGGCCTTTTAACTGTAGTAAGAAGGGGTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050101.9 |
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| 3UTR GCA 72 bp | ACTTTCTCTGGCTTACAACTTGCCCCCTATTCCTTCTaGTCTAAGCCAGCTGTTAAAGTATCTATCACTGAA | + |
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Preference number: 3 (lower is better) Translates to: TFSGLQLAPYSF*SKPAVKVSITE Trigger: TTCAGTGATAGATACTTTAACAGCTGGCTTAGAGCAGAAGGAATAGGGGGCAAGTTGTAAGCCAGAGAAAGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050101.9 |
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| 3UTR CCA 72 bp | AATCTTGTGATGGTTTTCCAAAACCCAGAGCATTTGTaGAGTTCTTGGCAACTGTGGCTAATAAAGGTGTCC | + |
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Preference number: 3 (lower is better) Translates to: NLVMVFQNPEHL*SSWQLWLIKVS Trigger: GGACACCTTTATTAGCCACAGTTGCCAAGAACTCCACAAATGCTCTGGGTTTTGGAAAACCATCACAAGATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050101.9 |
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| 3UTR-3UTR CAA 90 bp | CTGTTTGAGGAATGGTCCACTATTAAGGTAATTTCAGACTATAGACAATTCCCATCTCTGGCTTACAACTaGCCCCCTATTCCTTCTGCT | + |
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Preference number: 3 (lower is better) Translates to: LFEEWSTIKVISDYRQFPSLAYN*PPIPSA Trigger: AGCAGAAGGAATAGGGGGCAAGTTGTAAGCCAGAGA...TGGGAATTGTCTATAGTCTGAAATTACCTTAATAGTGGACCATTCCTCAAACAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050101.9 |
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| 3UTR-3UTR CAA 90 bp | CTCAAAGCACTGCTTTCTTCCAACAATAAACCACACCCTACTTATACACAAGATGCATTTGTGGAGTTCTaGGCAACTGTGGCTAATAAA | + |
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Preference number: 3 (lower is better) Translates to: LKALLSSNNKPHPTYTQDAFVEF*ATVANK Trigger: TTTATTAGCCACAGTTGCCAAGAACTCCACAAATGC...ATCTTGTGTATAAGTAGGGTGTGGTTTATTGTTGGAAGAAAGCAGTGCTTTGAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050101.9 |
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| 3UTR CCA 72 bp | GATACTTATTGCTCCTCTGATTTTCATCTAGGAGGATaGAAACCCAAGTATGACTCTCCAACACATGTTTTC | + |
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Preference number: 3 (lower is better) Translates to: DTYCSSDFHLGG*KPKYDSPTHVF Trigger: GAAAACATGTGTTGGAGAGTCATACTTGGGTTTCCATCCTCCTAGATGAAAATCAGAGGAGCAATAAGTATC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050101.9 |
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| 3UTR CCA 72 bp | TATCCAAAGAGTGTGAAAGACAATCAGTTACCCCACTaGACTGGAAACACACATTTATCCTTAAACTTCAGG | + |
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Preference number: 3 (lower is better) Translates to: YPKSVKDNQLPH*TGNTHLSLNFR Trigger: CCTGAAGTTTAAGGATAAATGTGTGTTTCCAGTCCAGTGGGGTAACTGATTGTCTTTCACACTCTTTGGATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050101.9 |
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| 3UTR-3UTR CAA 90 bp | CTGTTTGAGGAATGGTCCACTATTAAGGTAATTTCAGACTATAGACAATTCCCAACTGATGGTTTAAGTTaGTCTCTTTCTCCATGGTGT | + |
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Preference number: 3 (lower is better) Translates to: LFEEWSTIKVISDYRQFPTDGLS*SLSPWC Trigger: ACACCATGGAGAAAGAGACAAACTTAAACCATCAGT...TGGGAATTGTCTATAGTCTGAAATTACCTTAATAGTGGACCATTCCTCAAACAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050101.9 |
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| 3UTR TCA 72 bp | TTCTTTACTGAGCTAAATTCACTGGCCTCAGGATTATaGTTATCAAACAATTATCAGGTCGAGAGCTTACAG | + |
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Preference number: 3 (lower is better) Translates to: FFTELNSLASGL*LSNNYQVESLQ Trigger: CTGTAAGCTCTCGACCTGATAATTGTTTGATAATCATAATCCTGAGGCCAGTGAATTTAGCTCAGTAAAGAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050101.9 |
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| 3UTR-3UTR CAA 90 bp | CTGTTTGAGGAATGGTCCACTATTAAGGTAATTTCAGACTATAGACAATTCCCAAAAACATTTACATGGTaGTTCTCTGGTGTGACTTGT | + |
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Preference number: 3 (lower is better) Translates to: LFEEWSTIKVISDYRQFPKTFTW*FSGVTC Trigger: ACAAGTCACACCAGAGAACAACCATGTAAATGTTTT...TGGGAATTGTCTATAGTCTGAAATTACCTTAATAGTGGACCATTCCTCAAACAG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050101.9 |
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| 3UTR TCA 72 bp | CTTCAGGTCAATCTGCGGACTACTTTTCTAACAATTTaGATCCTGCATTCCAAACCAAGAATATACCTTATA | + |
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Preference number: 3 (lower is better) Translates to: LQVNLRTTFLTI*ILHSKPRIYLI Trigger: TATAAGGTATATTCTTGGTTTGGAATGCAGGATTCAAATTGTTAGAAAAGTAGTCCGCAGATTGACCTGAAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050101.9 |
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| 3UTR CAA 72 bp | CATTGCATCGCTCCTCTACTTTCTCTGGCTTACAACTaGCCCCCTATTCCTTCTGCTCTAAGCCAGCTGTTA | + |
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Preference number: 4 (lower is better) Translates to: HCIAPLLSLAYN*PPIPSALSQLL Trigger: TAACAGCTGGCTTAGAGCAGAAGGAATAGGGGGCAAGTTGTAAGCCAGAGAAAGTAGAGGAGCGATGCAATG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050101.9 |
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| 3UTR CAA 72 bp | GATGGTTTTCCAAAACCCAGAGCATTTGTGGAGTTCTaGGCAACTGTGGCTAATAAAGGTGTCCTGACAGGG | + |
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Preference number: 4 (lower is better) Translates to: DGFPKPRAFVEF*ATVANKGVLTG Trigger: CCCTGTCAGGACACCTTTATTAGCCACAGTTGCCAAGAACTCCACAAATGCTCTGGGTTTTGGAAAACCATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050101.9 |
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| 3UTR CAA 72 bp | ATGAATCTTGTGATGGTTTTCCAAAACCCAGAGCATTaGTGGAGTTCTTGGCAACTGTGGCTAATAAAGGTG | + |
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Preference number: 4 (lower is better) Translates to: MNLVMVFQNPEH*WSSWQLWLIKV Trigger: CACCTTTATTAGCCACAGTTGCCAAGAACTCCACAAATGCTCTGGGTTTTGGAAAACCATCACAAGATTCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050101.9 |
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| 3UTR CAA 72 bp | ATACAAAACATTTACATGGTTGTTCTCTGGTGTGACTaGTCTTGTAAAAATGAGGACTTAACCCTGCTGGAG | + |
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Preference number: 4 (lower is better) Translates to: IQNIYMVVLWCD*SCKNEDLTLLE Trigger: CTCCAGCAGGGTTAAGTCCTCATTTTTACAAGACAAGTCACACCAGAGAACAACCATGTAAATGTTTTGTAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000050101.9 |
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| CDS-3UTR TCA 90 bp | CTCAAAGCACTGCTTTCTTCCAACAATAAACCACACCCTACTTATACACAAGATTCACACATAGACCATTaGTGTGGTTTTTCTTCCATA | + |
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Preference number: 4 (lower is better) Translates to: LKALLSSNNKPHPTYTQDSHIDH*CGFSSI Trigger: TATGGAAGAAAAACCACATCAATGGTCTATGTGTGA...ATCTTGTGTATAAGTAGGGTGTGGTTTATTGTTGGAAGAAAGCAGTGCTTTGAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050101.9 |
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| CDS-3UTR TCA 90 bp | CTGTTTGAGGAATGGTCCACTATTAAGGTAATTTCAGACTATAGACAATTCCCAATGTTGAAGAAGGGCTaGGCTATGATGAAAGGTTTT | + |
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Preference number: 4 (lower is better) Translates to: LFEEWSTIKVISDYRQFPMLKKG*AMMKGF Trigger: AAAACCTTTCATCATAGCTCAGCCCTTCTTCAACAT...TGGGAATTGTCTATAGTCTGAAATTACCTTAATAGTGGACCATTCCTCAAACAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050101.9 |
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| 3UTR CAA 72 bp | TGTCTGAAGTACTGCCAATACAAAACATTTACATGGTaGTTCTCTGGTGTGACTTGTCTTGTAAAAATGAGG | + |
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Preference number: 4 (lower is better) Translates to: CLKYCQYKTFTW*FSGVTCLVKMR Trigger: CCTCATTTTTACAAGACAAGTCACACCAGAGAACAACCATGTAAATGTTTTGTATTGGCAGTACTTCAGACA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000050101.9 |
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| CDS-3UTR TCA 90 bp | GCCCTCTTCTGGTGTCTGAAGACAGCTACAGTGTACTTATGTATAATAATAAATGTGGGAAATAAGATCTaGACTTTGGATGAAGGTTTT | + |
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Preference number: 4 (lower is better) Translates to: ALFWCLKTATVYLCIIINVGNKI*TLDEGF Trigger: AAAACCTTCATCCAAAGTTCAGATCTTATTTCCCAC...ATTTATTATTATACATAAGTACACTGTAGCTGTCTTCAGACACCAGAAGAGGGC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050101.9 |
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| 3UTR CAA 72 bp | ACTTCAGGTCAATCTGCGGACTACTTTTCTAACAATTaGAATCCTGCATTCCAAACCAAGAATATACCTTAT | + |
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Preference number: 4 (lower is better) Translates to: TSGQSADYFSNN*NPAFQTKNIPY Trigger: ATAAGGTATATTCTTGGTTTGGAATGCAGGATTCAAATTGTTAGAAAAGTAGTCCGCAGATTGACCTGAAGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050101.9 |
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| 3UTR CAA 72 bp | GGAAGGGTAAATCACCAACCTACTGATGGTTTAAGTTaGTCTCTTTCTCCATGGTGTTTCTATTATAATAAC | + |
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Preference number: 4 (lower is better) Translates to: GRVNHQPTDGLS*SLSPWCFYYNN Trigger: GTTATTATAATAGAAACACCATGGAGAAAGAGACAAACTTAAACCATCAGTAGGTTGGTGATTTACCCTTCC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050101.9 |
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