RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZFP296 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000011267

Ensembl transcript IDs: ENSMUST00000108453.2

Found 87 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AGAATAAAAAGGAGATGGTTTATTCACACAGAGAAAAGACTAAAGTaGCTGCCCATTTCCACTTGCTTTAGTGACACCTGTACAGAGAAT +
Preference number: 1 (lower is better)
Translates to: RIKRRWFIHTEKRLK*LPISTCFSDTCTEN
Trigger: ATTCTCTGTACAGGTGTCACTAAAGCAAGTGGAAATGGGCAGGCACTTTAGTCTTTTCTCTGTGTGAATAAACCATCTCCTTTTTATTCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR GCA 90 bp AGGAGATGGTTTATTCACACAGAGAAAAGACTAAAGTGCCTGCCCATTTCCACTGGAGGGGCTCCCGGGTaGCAGCTGCCGATGGGTCTT +
Preference number: 4 (lower is better)
Translates to: RRWFIHTEKRLKCLPISTGGAPG*QLPMGL
Trigger: AAGACCCATCGGCAGCTGGCACCCGGGAGCCCCTCC...AGTGGAAATGGGCAGGCACTTTAGTCTTTTCTCTGTGTGAATAAACCATCTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR CCA 90 bp CTAAAGTGCCTGCCCATTTCCACTTGCTTTAGTGACACCTGTACAGAGAATATGTGCACACATCACAGGTaGGGCTCCGCCGGGCAGCAC +
Preference number: 4 (lower is better)
Translates to: LKCLPISTCFSDTCTENMCTHHR*GSAGQH
Trigger: GTGCTGCCCGGCGGAGCCCCACCTGTGATGTGTGCA...CATATTCTCTGTACAGGTGTCACTAAAGCAAGTGGAAATGGGCAGGCACTTTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR GCA 90 bp AAAAGACTAAAGTGCCTGCCCATTTCCACTTGCTTTAGTGACACCTGTACAGAGGCTGGCTGGAGCAGCTaGGTAGGCAGCTGGTTCAGG +
Preference number: 4 (lower is better)
Translates to: KRLKCLPISTCFSDTCTEAGWSS*VGSWFR
Trigger: CCTGAACCAGCTGCCTACGCAGCTGCTCCAGCCAGC...CTCTGTACAGGTGTCACTAAAGCAAGTGGAAATGGGCAGGCACTTTAGTCTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR CCA 90 bp ACAGAGAAAAGACTAAAGTGCCTGCCCATTTCCACTTGCTTTAGTGACACCTGTTGCTACTGGCAGAAGTaGAGGGGCTCCCGGGTGCCA +
Preference number: 4 (lower is better)
Translates to: TEKRLKCLPISTCFSDTCCYWQK*RGSRVP
Trigger: TGGCACCCGGGAGCCCCTCCACTTCTGCCAGTAGCA...ACAGGTGTCACTAAAGCAAGTGGAAATGGGCAGGCACTTTAGTCTTTTCTCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR CCA 90 bp GAGAAAAGACTAAAGTGCCTGCCCATTTCCACTTGCTTTAGTGACACCTGTACATGGGAGTGTGCTGGCTaGAGCAGCTGCGTAGGCAGC +
Preference number: 4 (lower is better)
Translates to: EKRLKCLPISTCFSDTCTWECAG*SSCVGS
Trigger: GCTGCCTACGCAGCTGCTCCAGCCAGCACACTCCCA...TGTACAGGTGTCACTAAAGCAAGTGGAAATGGGCAGGCACTTTAGTCTTTTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR CCA 90 bp AGGAGATGGTTTATTCACACAGAGAAAAGACTAAAGTGCCTGCCCATTTCCACTGGGGCCCCAGGTTCCTaGACTCCTGCTGTGGCTGCA +
Preference number: 4 (lower is better)
Translates to: RRWFIHTEKRLKCLPISTGAPGS*TPAVAA
Trigger: TGCAGCCACAGCAGGAGTCCAGGAACCTGGGGCCCC...AGTGGAAATGGGCAGGCACTTTAGTCTTTTCTCTGTGTGAATAAACCATCTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR GCA 90 bp AAAAGACTAAAGTGCCTGCCCATTTCCACTTGCTTTAGTGACACCTGTACAGAGGACTCCTGCTGTGGCTaGAGCTCCAGCCTTCTCCAC +
Preference number: 4 (lower is better)
Translates to: KRLKCLPISTCFSDTCTEDSCCG*SSSLLH
Trigger: GTGGAGAAGGCTGGAGCTGCAGCCACAGCAGGAGTC...CTCTGTACAGGTGTCACTAAAGCAAGTGGAAATGGGCAGGCACTTTAGTCTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR TCA 90 bp AAAAGGAGATGGTTTATTCACACAGAGAAAAGACTAAAGTGCCTGCCCATTTCCTGCGACGGTGGCGGTTaGGCTTGCTACTCTGGGCAC +
Preference number: 4 (lower is better)
Translates to: KRRWFIHTEKRLKCLPISCDGGG*ACYSGH
Trigger: GTGCCCAGAGTAGCAAGCTCAACCGCCACCGTCGCA...GGAAATGGGCAGGCACTTTAGTCTTTTCTCTGTGTGAATAAACCATCTCCTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR CCA 90 bp CTAAAGTGCCTGCCCATTTCCACTTGCTTTAGTGACACCTGTACAGAGAATATGTGGTCCCACTGGGCGTaGCACAGCAACTTCCAAGGA +
Preference number: 4 (lower is better)
Translates to: LKCLPISTCFSDTCTENMWSHWA*HSNFQG
Trigger: TCCTTGGAAGTTGCTGTGCCACGCCCAGTGGGACCA...CATATTCTCTGTACAGGTGTCACTAAAGCAAGTGGAAATGGGCAGGCACTTTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR CCA 90 bp AAGGAGATGGTTTATTCACACAGAGAAAAGACTAAAGTGCCTGCCCATTTCCACCTGCCACTGCTGACATaGCTGCTGCCACCTCAGCCA +
Preference number: 4 (lower is better)
Translates to: KEMVYSHREKTKVPAHFHLPLLT*LLPPQP
Trigger: TGGCTGAGGTGGCAGCAGCCATGTCAGCAGTGGCAG...GTGGAAATGGGCAGGCACTTTAGTCTTTTCTCTGTGTGAATAAACCATCTCCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR CCA 90 bp AGATGGTTTATTCACACAGAGAAAAGACTAAAGTGCCTGCCCATTTCCACTTGCCTCCACAGTCTGGCTTaGGAGTGTGCTGGCTGGAGC +
Preference number: 4 (lower is better)
Translates to: RWFIHTEKRLKCLPISTCLHSLA*ECAGWS
Trigger: GCTCCAGCCAGCACACTCCCAAGCCAGACTGTGGAG...GCAAGTGGAAATGGGCAGGCACTTTAGTCTTTTCTCTGTGTGAATAAACCATCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR CCA 90 bp AAAAGACTAAAGTGCCTGCCCATTTCCACTTGCTTTAGTGACACCTGTACAGAGCCAGCCAACAAAACCTaGACCCCCTTGAGCTCCGCT +
Preference number: 4 (lower is better)
Translates to: KRLKCLPISTCFSDTCTEPANKT*TPLSSA
Trigger: AGCGGAGCTCAAGGGGGTCCAGGTTTTGTTGGCTGG...CTCTGTACAGGTGTCACTAAAGCAAGTGGAAATGGGCAGGCACTTTAGTCTTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR TCA 90 bp AAAAGACTAAAGTGCCTGCCCATTTCCACTTGCTTTAGTGACACCTGTACAGAGGGTTGCTGCTGTTGGTaGAGGACTTCCCGCAGAACT +
Preference number: 4 (lower is better)
Translates to: KRLKCLPISTCFSDTCTEGCCCW*RTSRRT
Trigger: AGTTCTGCGGGAAGTCCTTCACCAACAGCAGCAACC...CTCTGTACAGGTGTCACTAAAGCAAGTGGAAATGGGCAGGCACTTTAGTCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR GCA 90 bp AGACTAAAGTGCCTGCCCATTTCCACTTGCTTTAGTGACACCTGTACAGAGAATGTCAACAGATCTGGGTaGTTGTCGGTCCATGGCTGG +
Preference number: 4 (lower is better)
Translates to: RLKCLPISTCFSDTCTENVNRSG*LSVHGW
Trigger: CCAGCCATGGACCGACAAGCACCCAGATCTGTTGAC...ATTCTCTGTACAGGTGTCACTAAAGCAAGTGGAAATGGGCAGGCACTTTAGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR GCA 90 bp AAGGAGATGGTTTATTCACACAGAGAAAAGACTAAAGTGCCTGCCCATTTCCACGTGTGTGAACGTCGGTaGACGGTCAGGTTGCTGCTG +
Preference number: 4 (lower is better)
Translates to: KEMVYSHREKTKVPAHFHVCERR*TVRLLL
Trigger: CAGCAGCAACCTGACCGTGCACCGACGTTCACACAC...GTGGAAATGGGCAGGCACTTTAGTCTTTTCTCTGTGTGAATAAACCATCTCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR GCA 90 bp AGACTAAAGTGCCTGCCCATTTCCACTTGCTTTAGTGACACCTGTACAGAGAATATCTCTGGGTGCTTCTaGCGCAGGTGCTTGTCCAGT +
Preference number: 4 (lower is better)
Translates to: RLKCLPISTCFSDTCTENISGCF*RRCLSS
Trigger: ACTGGACAAGCACCTGCGGCAGAAGCACCCAGAGAT...ATTCTCTGTACAGGTGTCACTAAAGCAAGTGGAAATGGGCAGGCACTTTAGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR CCA 90 bp AAGGAGATGGTTTATTCACACAGAGAAAAGACTAAAGTGCCTGCCCATTTCCACGTGCTTGTCGGTCCATaGCTGGCGGTCGGAAGACTT +
Preference number: 4 (lower is better)
Translates to: KEMVYSHREKTKVPAHFHVLVGP*LAVGRL
Trigger: AAGTCTTCCGACCGCCAGCCATGGACCGACAAGCAC...GTGGAAATGGGCAGGCACTTTAGTCTTTTCTCTGTGTGAATAAACCATCTCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR CCA 90 bp CACACAGAGAAAAGACTAAAGTGCCTGCCCATTTCCACTTGCTTTAGTGACACCGAGCCTTCAGCTCTTTaGATTCTGAGATGGGGTCGG +
Preference number: 4 (lower is better)
Translates to: HTEKRLKCLPISTCFSDTEPSAL*ILRWGR
Trigger: CCGACCCCATCTCAGAATCCAAAGAGCTGAAGGCTC...GGTGTCACTAAAGCAAGTGGAAATGGGCAGGCACTTTAGTCTTTTCTCTGTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR CCA 90 bp TGGTTTATTCACACAGAGAAAAGACTAAAGTGCCTGCCCATTTCCACTTGCTTTGGGCTTGCTTTCAACTaGCGCCACCACTGCCACTGC +
Preference number: 4 (lower is better)
Translates to: WFIHTEKRLKCLPISTCFGLAFN*RHHCHC
Trigger: GCAGTGGCAGTGGTGGCGCCAGTTGAAAGCAAGCCC...AAAGCAAGTGGAAATGGGCAGGCACTTTAGTCTTTTCTCTGTGTGAATAAACCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR CCA 90 bp ATTCACACAGAGAAAAGACTAAAGTGCCTGCCCATTTCCACTTGCTTTAGTGACGGCAGCACTGCTCACTaGAGGGGGCTTGCTTTCAAC +
Preference number: 4 (lower is better)
Translates to: IHTEKRLKCLPISTCFSDGSTAH*RGLAFN
Trigger: GTTGAAAGCAAGCCCCCTCCAGTGAGCAGTGCTGCC...GTCACTAAAGCAAGTGGAAATGGGCAGGCACTTTAGTCTTTTCTCTGTGTGAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR CCA 90 bp TTTATTCACACAGAGAAAAGACTAAAGTGCCTGCCCATTTCCACTTGCTTTAGTGGCTTGGGAGTGTGCTaGCTGGAGCAGCTGCGTAGG +
Preference number: 4 (lower is better)
Translates to: FIHTEKRLKCLPISTCFSGLGVC*LEQLRR
Trigger: CCTACGCAGCTGCTCCAGCCAGCACACTCCCAAGCC...ACTAAAGCAAGTGGAAATGGGCAGGCACTTTAGTCTTTTCTCTGTGTGAATAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR CCA 90 bp AGGAGATGGTTTATTCACACAGAGAAAAGACTAAAGTGCCTGCCCATTTCCACTCAGTCCTCTCTACTTTaGCAGGGGCTCCCCAGCCAA +
Preference number: 4 (lower is better)
Translates to: RRWFIHTEKRLKCLPISTQSSLL*QGLPSQ
Trigger: TTGGCTGGGGAGCCCCTGCCAAAGTAGAGAGGACTG...AGTGGAAATGGGCAGGCACTTTAGTCTTTTCTCTGTGTGAATAAACCATCTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR CCA 90 bp AAAAGGAGATGGTTTATTCACACAGAGAAAAGACTAAAGTGCCTGCCCATTTCCCCATGGGTGCGACGGTaGCGGTTGAGCTTGCTACTC +
Preference number: 4 (lower is better)
Translates to: KRRWFIHTEKRLKCLPISPWVRR*RLSLLL
Trigger: GAGTAGCAAGCTCAACCGCCACCGTCGCACCCATGG...GGAAATGGGCAGGCACTTTAGTCTTTTCTCTGTGTGAATAAACCATCTCCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR GCA 90 bp TTTATTCACACAGAGAAAAGACTAAAGTGCCTGCCCATTTCCACTTGCTTTAGTAGGTTCCTGGACTCCTaGTGTGGCTGCAGCTCCAGC +
Preference number: 4 (lower is better)
Translates to: FIHTEKRLKCLPISTCFSRFLDS*CGCSSS
Trigger: GCTGGAGCTGCAGCCACAGCAGGAGTCCAGGAACCT...ACTAAAGCAAGTGGAAATGGGCAGGCACTTTAGTCTTTTCTCTGTGTGAATAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR GCA 90 bp AAAAAGGAGATGGTTTATTCACACAGAGAAAAGACTAAAGTGCCTGCCCATTTCCAGGCCATCTCTGGGTaGTTCTGCCGCAGGTGCTTG +
Preference number: 4 (lower is better)
Translates to: KKEMVYSHREKTKVPAHFQAISG*FCRRCL
Trigger: CAAGCACCTGCGGCAGAAGCACCCAGAGATGGCCTG...GAAATGGGCAGGCACTTTAGTCTTTTCTCTGTGTGAATAAACCATCTCCTTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR CCA 90 bp AGGAGATGGTTTATTCACACAGAGAAAAGACTAAAGTGCCTGCCCATTTCCACTTACTGTCTGCCACACTaGAGGCAGCTCAGAGCCTTC +
Preference number: 4 (lower is better)
Translates to: RRWFIHTEKRLKCLPISTYCLPH*RQLRAF
Trigger: GAAGGCTCTGAGCTGCCTCCAGTGTGGCAGACAGTA...AGTGGAAATGGGCAGGCACTTTAGTCTTTTCTCTGTGTGAATAAACCATCTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR CCA 90 bp AAAAAGGAGATGGTTTATTCACACAGAGAAAAGACTAAAGTGCCTGCCCATTTCCCTGGACTCCTGCTGTaGCTGCAGCTCCAGCCTTCT +
Preference number: 4 (lower is better)
Translates to: KKEMVYSHREKTKVPAHFPGLLL*LQLQPS
Trigger: AGAAGGCTGGAGCTGCAGCCACAGCAGGAGTCCAGG...GAAATGGGCAGGCACTTTAGTCTTTTCTCTGTGTGAATAAACCATCTCCTTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR TCA 90 bp CTAAAGTGCCTGCCCATTTCCACTTGCTTTAGTGACACCTGTACAGAGAATATGGAGGCAGTTTGGAGTTaGCGCTTCACATCCGATATG +
Preference number: 4 (lower is better)
Translates to: LKCLPISTCFSDTCTENMEAVWS*RFTSDM
Trigger: CATATCGGATGTGAAGCGTCAACTCCAAACTGCCTC...CATATTCTCTGTACAGGTGTCACTAAAGCAAGTGGAAATGGGCAGGCACTTTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR GCA 90 bp ACAGAGAAAAGACTAAAGTGCCTGCCCATTTCCACTTGCTTTAGTGACACCTGTGTTGTGTCTGGTAGATaGATAGCCCATGGTCCCACT +
Preference number: 4 (lower is better)
Translates to: TEKRLKCLPISTCFSDTCVVSGR*IAHGPT
Trigger: AGTGGGACCATGGGCTATGCATCTACCAGACACAAC...ACAGGTGTCACTAAAGCAAGTGGAAATGGGCAGGCACTTTAGTCTTTTCTCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR GCA 90 bp GAGAAAAGACTAAAGTGCCTGCCCATTTCCACTTGCTTTAGTGACACCTGTACAAAGGGCACAAGGCAGTaGGGGCACTTGACAGTTTTA +
Preference number: 4 (lower is better)
Translates to: EKRLKCLPISTCFSDTCTKGTRQ*GHLTVL
Trigger: TAAAACTGTCAAGTGCCCGCACTGCCTTGTGCCCTT...TGTACAGGTGTCACTAAAGCAAGTGGAAATGGGCAGGCACTTTAGTCTTTTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR CCA 90 bp TGGTTTATTCACACAGAGAAAAGACTAAAGTGCCTGCCCATTTCCACTTGCTTTGCAGGTCAACAGATCTaGGTGCTTGTCGGTCCATGG +
Preference number: 4 (lower is better)
Translates to: WFIHTEKRLKCLPISTCFAGQQI*VLVGPW
Trigger: CCATGGACCGACAAGCACCCAGATCTGTTGACCTGC...AAAGCAAGTGGAAATGGGCAGGCACTTTAGTCTTTTCTCTGTGTGAATAAACCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR TCA 90 bp AAAAGGAGATGGTTTATTCACACAGAGAAAAGACTAAAGTGCCTGCCCATTTCCCAGCTCTTTGGATTCTaGGATGGGGTCGGAGACTTG +
Preference number: 4 (lower is better)
Translates to: KRRWFIHTEKRLKCLPISQLFGF*DGVGDL
Trigger: CAAGTCTCCGACCCCATCTCAGAATCCAAAGAGCTG...GGAAATGGGCAGGCACTTTAGTCTTTTCTCTGTGTGAATAAACCATCTCCTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR GCA 90 bp ATAAAAAGGAGATGGTTTATTCACACAGAGAAAAGACTAAAGTGCCTGCCCATTCGCAGAACTCACACTTaGCCCCAGGCCCATGACTCT +
Preference number: 4 (lower is better)
Translates to: IKRRWFIHTEKRLKCLPIRRTHT*PQAHDS
Trigger: AGAGTCATGGGCCTGGGGGCAAGTGTGAGTTCTGCG...AATGGGCAGGCACTTTAGTCTTTTCTCTGTGTGAATAAACCATCTCCTTTTTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR CCA 90 bp GAGATGGTTTATTCACACAGAGAAAAGACTAAAGTGCCTGCCCATTTCCACTTGGTGTGGGAACGCATGTaGACCTTGAGGTTGCTGAAA +
Preference number: 4 (lower is better)
Translates to: EMVYSHREKTKVPAHFHLVWERM*TLRLLK
Trigger: TTTCAGCAACCTCAAGGTCCACATGCGTTCCCACAC...CAAGTGGAAATGGGCAGGCACTTTAGTCTTTTCTCTGTGTGAATAAACCATCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR TCA 90 bp AAAAAGGAGATGGTTTATTCACACAGAGAAAAGACTAAAGTGCCTGCCCATTTCTCTTCTTGTGTCTGTTaGGCTTGCTGCTCTGAGCGC +
Preference number: 4 (lower is better)
Translates to: KKEMVYSHREKTKVPAHFSSCVC*ACCSER
Trigger: GCGCTCAGAGCAGCAAGCTCAACAGACACAAGAAGA...GAAATGGGCAGGCACTTTAGTCTTTTCTCTGTGTGAATAAACCATCTCCTTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR GCA 90 bp ATAAAAAGGAGATGGTTTATTCACACAGAGAAAAGACTAAAGTGCCTGCCCATTTTGTCCAGTGTGGCCTaGAAGCCAAAGGGCACAAGG +
Preference number: 4 (lower is better)
Translates to: IKRRWFIHTEKRLKCLPILSSVA*KPKGTR
Trigger: CCTTGTGCCCTTTGGCTTGCAGGCCACACTGGACAA...AATGGGCAGGCACTTTAGTCTTTTCTCTGTGTGAATAAACCATCTCCTTTTTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR CCA 90 bp ATAAAAAGGAGATGGTTTATTCACACAGAGAAAAGACTAAAGTGCCTGCCCATTCTTTGGATTCTGAGATaGGGTCGGAGACTTGGAGAA +
Preference number: 4 (lower is better)
Translates to: IKRRWFIHTEKRLKCLPILWILR*GRRLGE
Trigger: TTCTCCAAGTCTCCGACCCCATCTCAGAATCCAAAG...AATGGGCAGGCACTTTAGTCTTTTCTCTGTGTGAATAAACCATCTCCTTTTTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS CCA 90 bp CTTGAGCTCCGCTGCCAGGGGCCCCAGGTTCCTGGACTCCTGCTGTaGCTGCAGCTCCAGCCTTCTCCACAGTCTGGCTTGGGAGTGTGC +
Preference number: 5 (lower is better)
Translates to: LELRCQGPQVPGLLL*LQLQPSPQSGLGVC
Trigger: GCACACTCCCAAGCCAGACTGTGGAGAAGGCTGGAGCTGCAGCCACAGCAGGAGTCCAGGAACCTGGGGCCCCTGGCAGCGGAGCTCAAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS GCA 90 bp CTGTGGCTGCAGCTCCAGCCTTCTCCACAGTCTGGCTTGGGAGTGTaGTGGCTGGAGCAGCTGCGTAGGCAGCTGGTTCAGGAGGGGCTG +
Preference number: 5 (lower is better)
Translates to: LWLQLQPSPQSGLGV*WLEQLRRQLVQEGL
Trigger: CAGCCCCTCCTGAACCAGCTGCCTACGCAGCTGCTCCAGCCAGCACACTCCCAAGCCAGACTGTGGAGAAGGCTGGAGCTGCAGCCACAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS CCA 90 bp CGAGTGGGCGCGAGGCAGTTTGGAGTTGACGCTTCACATCCGATATaGGCATGTCCCTCGCGATCCAGGGCCCCTGCGCCAGGGACCTCA +
Preference number: 5 (lower is better)
Translates to: RVGARQFGVDASHPI*ACPSRSRAPAPGTS
Trigger: TGAGGTCCCTGGCGCAGGGGCCCTGGATCGCGAGGGACATGCCCATATCGGATGTGAAGCGTCAACTCCAAACTGCCTCGCGCCCACTCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS CCA 90 bp CCCGCAACGGCCGCAGGTCAACAGATCTGGGTGCTTGTCGGTCCATaGCTGGCGGTCGGAAGACTTAGAACTCAGAGGCATCCGCGGGGC +
Preference number: 5 (lower is better)
Translates to: PATAAGQQIWVLVGP*LAVGRLRTQRHPRG
Trigger: GCCCCGCGGATGCCTCTGAGTTCTAAGTCTTCCGACCGCCAGCCATGGACCGACAAGCACCCAGATCTGTTGACCTGCGGCCGTTGCGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS CCA 90 bp TGGCTGCAGCTCCAGCCTTCTCCACAGTCTGGCTTGGGAGTGTGCTaGCTGGAGCAGCTGCGTAGGCAGCTGGTTCAGGAGGGGCTGCTG +
Preference number: 5 (lower is better)
Translates to: WLQLQPSPQSGLGVC*LEQLRRQLVQEGLL
Trigger: CAGCAGCCCCTCCTGAACCAGCTGCCTACGCAGCTGCTCCAGCCAGCACACTCCCAAGCCAGACTGTGGAGAAGGCTGGAGCTGCAGCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS CCA 90 bp CAACGGCCGCAGGTCAACAGATCTGGGTGCTTGTCGGTCCATGGCTaGCGGTCGGAAGACTTAGAACTCAGAGGCATCCGCGGGGCACAC +
Preference number: 5 (lower is better)
Translates to: QRPQVNRSGCLSVHG*RSEDLELRGIRGAH
Trigger: GTGTGCCCCGCGGATGCCTCTGAGTTCTAAGTCTTCCGACCGCCAGCCATGGACCGACAAGCACCCAGATCTGTTGACCTGCGGCCGTTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS GCA 90 bp CGCTTCACATCCGATATGGGCATGTCCCTCGCGATCCAGGGCCCCTaGGCCAGGGACCTCAAGTCGAGGTCCGGCTTTACATCCATGACA +
Preference number: 5 (lower is better)
Translates to: RFTSDMGMSLAIQGP*ARDLKSRSGFTSMT
Trigger: TGTCATGGATGTAAAGCCGGACCTCGACTTGAGGTCCCTGGCGCAGGGGCCCTGGATCGCGAGGGACATGCCCATATCGGATGTGAAGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS TCA 90 bp CACCAGTGTGTGAACGTCGGTGCACGGTCAGGTTGCTGCTGTTGGTaGAGGACTTCCCGCAGAACTCACACTTGCCCCCAGGCCCATGAC +
Preference number: 5 (lower is better)
Translates to: HQCVNVGARSGCCCW*RTSRRTHTCPQAHD
Trigger: GTCATGGGCCTGGGGGCAAGTGTGAGTTCTGCGGGAAGTCCTTCACCAACAGCAGCAACCTGACCGTGCACCGACGTTCACACACTGGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS GCA 90 bp CCAGCAGCGGAGCCTCTGGGGTATCTAGGTGTTGTGTCTGGTAGATaGATAGCCCATGGTCCCACTGGGCGTGGCACAGCAACTTCCAAG +
Preference number: 5 (lower is better)
Translates to: PAAEPLGYLGVVSGR*IAHGPTGRGTATSK
Trigger: CTTGGAAGTTGCTGTGCCACGCCCAGTGGGACCATGGGCTATGCATCTACCAGACACAACACCTAGATACCCCAGAGGCTCCGCTGCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS GCA 90 bp AATGGAAAGATCTTCCCGCAACGGCCGCAGGTCAACAGATCTGGGTaGTTGTCGGTCCATGGCTGGCGGTCGGAAGACTTAGAACTCAGA +
Preference number: 5 (lower is better)
Translates to: NGKIFPQRPQVNRSG*LSVHGWRSEDLELR
Trigger: TCTGAGTTCTAAGTCTTCCGACCGCCAGCCATGGACCGACAAGCACCCAGATCTGTTGACCTGCGGCCGTTGCGGGAAGATCTTTCCATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS GCA 90 bp CCCGCAGAACTCACACTTGCCCCCAGGCCCATGACTCTTCCTAGGTaGTGTCTTCTCGATCTTTACAGGGTCAGTCCTCTCTACTTTGGC +
Preference number: 5 (lower is better)
Translates to: PAELTLAPRPMTLPR*CLLDLYRVSPLYFG
Trigger: GCCAAAGTAGAGAGGACTGACCCTGTAAAGATCGAGAAGACAGCACCTAGGAAGAGTCATGGGCCTGGGGGCAAGTGTGAGTTCTGCGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS CCA 90 bp GCGTGGCACAGCAACTTCCAAGGACTAGTGTACTGTCTGCCACACTaGAGGCAGCTCAGAGCCTTCAGCTCTTTGGATTCTGAGATGGGG +
Preference number: 5 (lower is better)
Translates to: AWHSNFQGLVYCLPH*RQLRAFSSLDSEMG
Trigger: CCCCATCTCAGAATCCAAAGAGCTGAAGGCTCTGAGCTGCCTCCAGTGTGGCAGACAGTACACTAGTCCTTGGAAGTTGCTGTGCCACGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS TCA 90 bp TTGGTGAAGGACTTCCCGCAGAACTCACACTTGCCCCCAGGCCCATaGCTCTTCCTAGGTGCTGTCTTCTCGATCTTTACAGGGTCAGTC +
Preference number: 5 (lower is better)
Translates to: LVKDFPQNSHLPPGP*LFLGAVFSIFTGSV
Trigger: GACTGACCCTGTAAAGATCGAGAAGACAGCACCTAGGAAGAGTCATGGGCCTGGGGGCAAGTGTGAGTTCTGCGGGAAGTCCTTCACCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR CAA 90 bp CTAAAGTGCCTGCCCATTTCCACTTGCTTTAGTGACACCTGTACAGAGAATATGGTGCGACGGTGGCGGTaGAGCTTGCTACTCTGGGCA +
Preference number: 5 (lower is better)
Translates to: LKCLPISTCFSDTCTENMVRRWR*SLLLWA
Trigger: TGCCCAGAGTAGCAAGCTCAACCGCCACCGTCGCAC...CATATTCTCTGTACAGGTGTCACTAAAGCAAGTGGAAATGGGCAGGCACTTTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR CAA 90 bp CTAAAGTGCCTGCCCATTTCCACTTGCTTTAGTGACACCTGTACAGAGAATATGGAGCTGAGGGTCTTCTaGCACACATCACAGGTGGGG +
Preference number: 5 (lower is better)
Translates to: LKCLPISTCFSDTCTENMELRVF*HTSQVG
Trigger: CCCCACCTGTGATGTGTGCAAGAAGACCCTCAGCTC...CATATTCTCTGTACAGGTGTCACTAAAGCAAGTGGAAATGGGCAGGCACTTTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR CAA 90 bp AGGAGATGGTTTATTCACACAGAGAAAAGACTAAAGTGCCTGCCCATTTCCACTTCAGTCCTCTCTACTTaGGCAGGGGCTCCCCAGCCA +
Preference number: 5 (lower is better)
Translates to: RRWFIHTEKRLKCLPISTSVLST*AGAPQP
Trigger: TGGCTGGGGAGCCCCTGCCAAAGTAGAGAGGACTGA...AGTGGAAATGGGCAGGCACTTTAGTCTTTTCTCTGTGTGAATAAACCATCTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR CAA 90 bp ATTCACACAGAGAAAAGACTAAAGTGCCTGCCCATTTCCACTTGCTTTAGTGACGATGGGGTCGGAGACTaGGAGAAGCTGACAGCCTTG +
Preference number: 5 (lower is better)
Translates to: IHTEKRLKCLPISTCFSDDGVGD*EKLTAL
Trigger: CAAGGCTGTCAGCTTCTCCAAGTCTCCGACCCCATC...GTCACTAAAGCAAGTGGAAATGGGCAGGCACTTTAGTCTTTTCTCTGTGTGAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR CAA 90 bp ATTCACACAGAGAAAAGACTAAAGTGCCTGCCCATTTCCACTTGCTTTAGTGACGTCAGGTTGCTGCTGTaGGTGAAGGACTTCCCGCAG +
Preference number: 5 (lower is better)
Translates to: IHTEKRLKCLPISTCFSDVRLLL*VKDFPQ
Trigger: CTGCGGGAAGTCCTTCACCAACAGCAGCAACCTGAC...GTCACTAAAGCAAGTGGAAATGGGCAGGCACTTTAGTCTTTTCTCTGTGTGAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR CAA 90 bp AAAAAGGAGATGGTTTATTCACACAGAGAAAAGACTAAAGTGCCTGCCCATTTCTCTCCACAGTCTGGCTaGGGAGTGTGCTGGCTGGAG +
Preference number: 5 (lower is better)
Translates to: KKEMVYSHREKTKVPAHFSPQSG*GVCWLE
Trigger: CTCCAGCCAGCACACTCCCAAGCCAGACTGTGGAGA...GAAATGGGCAGGCACTTTAGTCTTTTCTCTGTGTGAATAAACCATCTCCTTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR CAA 90 bp TTTATTCACACAGAGAAAAGACTAAAGTGCCTGCCCATTTCCACTTGCTTTAGTCGGTGCACGGTCAGGTaGCTGCTGTTGGTGAAGGAC +
Preference number: 5 (lower is better)
Translates to: FIHTEKRLKCLPISTCFSRCTVR*LLLVKD
Trigger: GTCCTTCACCAACAGCAGCAACCTGACCGTGCACCG...ACTAAAGCAAGTGGAAATGGGCAGGCACTTTAGTCTTTTCTCTGTGTGAATAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR CAA 90 bp ATAAAAAGGAGATGGTTTATTCACACAGAGAAAAGACTAAAGTGCCTGCCCATTAACAGATCTGGGTGCTaGTCGGTCCATGGCTGGCGG +
Preference number: 5 (lower is better)
Translates to: IKRRWFIHTEKRLKCLPINRSGC*SVHGWR
Trigger: CCGCCAGCCATGGACCGACAAGCACCCAGATCTGTT...AATGGGCAGGCACTTTAGTCTTTTCTCTGTGTGAATAAACCATCTCCTTTTTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR CAA 90 bp AGGAGATGGTTTATTCACACAGAGAAAAGACTAAAGTGCCTGCCCATTTCCACTAGAGCCTTCAGCTCTTaGGATTCTGAGATGGGGTCG +
Preference number: 5 (lower is better)
Translates to: RRWFIHTEKRLKCLPISTRAFSS*DSEMGS
Trigger: CGACCCCATCTCAGAATCCAAAGAGCTGAAGGCTCT...AGTGGAAATGGGCAGGCACTTTAGTCTTTTCTCTGTGTGAATAAACCATCTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR CAA 90 bp AGATGGTTTATTCACACAGAGAAAAGACTAAAGTGCCTGCCCATTTCCACTTGCTGCCGATGGGTCTTCTaGTGTCTGTTGAGCTTGCTG +
Preference number: 5 (lower is better)
Translates to: RWFIHTEKRLKCLPISTCCRWVF*CLLSLL
Trigger: CAGCAAGCTCAACAGACACAAGAAGACCCATCGGCA...GCAAGTGGAAATGGGCAGGCACTTTAGTCTTTTCTCTGTGTGAATAAACCATCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS-3UTR CAA 90 bp TGGTTTATTCACACAGAGAAAAGACTAAAGTGCCTGCCCATTTCCACTTGCTTTATGTGGACCTTGAGGTaGCTGAAAGAGCTGAGGGTC +
Preference number: 5 (lower is better)
Translates to: WFIHTEKRLKCLPISTCFMWTLR*LKELRV
Trigger: GACCCTCAGCTCTTTCAGCAACCTCAAGGTCCACAT...AAAGCAAGTGGAAATGGGCAGGCACTTTAGTCTTTTCTCTGTGTGAATAAACCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS CAA 72 bp GGGCTCCGCCGGGCAGCACTGCTCACTGGAGGGGGCTaGCTTTCAACTGGCGCCACCACTGCCACTGCTGAC +
Preference number: 6 (lower is better)
Translates to: GLRRAALLTGGG*LSTGATTATAD
Trigger: GTCAGCAGTGGCAGTGGTGGCGCCAGTTGAAAGCAAGCCCCCTCCAGTGAGCAGTGCTGCCCGGCGGAGCCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS GCA 72 bp GGCTCCGCCGGGCAGCACTGCTCACTGGAGGGGGCTTaGTTTCAACTGGCGCCACCACTGCCACTGCTGACA +
Preference number: 6 (lower is better)
Translates to: GSAGQHCSLEGA*FQLAPPLPLLT
Trigger: TGTCAGCAGTGGCAGTGGTGGCGCCAGTTGAAAGCAAGCCCCCTCCAGTGAGCAGTGCTGCCCGGCGGAGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS CCA 72 bp ATCACAGGTGGGGCTCCGCCGGGCAGCACTGCTCACTaGAGGGGGCTTGCTTTCAACTGGCGCCACCACTGC +
Preference number: 6 (lower is better)
Translates to: ITGGAPPGSTAH*RGLAFNWRHHC
Trigger: GCAGTGGTGGCGCCAGTTGAAAGCAAGCCCCCTCCAGTGAGCAGTGCTGCCCGGCGGAGCCCCACCTGTGAT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS GCA 72 bp TGCACACATCACAGGTGGGGCTCCGCCGGGCAGCACTaGTCACTGGAGGGGGCTTGCTTTCAACTGGCGCCA +
Preference number: 6 (lower is better)
Translates to: CTHHRWGSAGQH*SLEGACFQLAP
Trigger: TGGCGCCAGTTGAAAGCAAGCCCCCTCCAGTGAGCAGTGCTGCCCGGCGGAGCCCCACCTGTGATGTGTGCA
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS GCA 72 bp CACAGTCTGGCTTGGGAGTGTGCTGGCTGGAGCAGCTaGGTAGGCAGCTGGTTCAGGAGGGGCTGCTGGGGA +
Preference number: 6 (lower is better)
Translates to: HSLAWECAGWSS*VGSWFRRGCWG
Trigger: TCCCCAGCAGCCCCTCCTGAACCAGCTGCCTACGCAGCTGCTCCAGCCAGCACACTCCCAAGCCAGACTGTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS CCA 72 bp AGCAGCTGCGTAGGCAGCTGGTTCAGGAGGGGCTGCTaGGGAGACTCCCCTGCTACTGGCAGAAGTGGAGGG +
Preference number: 6 (lower is better)
Translates to: SSCVGSWFRRGC*GDSPATGRSGG
Trigger: CCCTCCACTTCTGCCAGTAGCAGGGGAGTCTCCCCAGCAGCCCCTCCTGAACCAGCTGCCTACGCAGCTGCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS GCA 72 bp TCCGATATGGGCATGTCCCTCGCGATCCAGGGCCCCTaGGCCAGGGACCTCAAGTCGAGGTCCGGCTTTACA +
Preference number: 6 (lower is better)
Translates to: SDMGMSLAIQGP*ARDLKSRSGFT
Trigger: TGTAAAGCCGGACCTCGACTTGAGGTCCCTGGCGCAGGGGCCCTGGATCGCGAGGGACATGCCCATATCGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS CCA 72 bp AGCCTTCTCCACAGTCTGGCTTGGGAGTGTGCTGGCTaGAGCAGCTGCGTAGGCAGCTGGTTCAGGAGGGGC +
Preference number: 6 (lower is better)
Translates to: SLLHSLAWECAG*SSCVGSWFRRG
Trigger: GCCCCTCCTGAACCAGCTGCCTACGCAGCTGCTCCAGCCAGCACACTCCCAAGCCAGACTGTGGAGAAGGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS CCA 72 bp TGTGGCTGCAGCTCCAGCCTTCTCCACAGTCTGGCTTaGGAGTGTGCTGGCTGGAGCAGCTGCGTAGGCAGC +
Preference number: 6 (lower is better)
Translates to: CGCSSSLLHSLA*ECAGWSSCVGS
Trigger: GCTGCCTACGCAGCTGCTCCAGCCAGCACACTCCCAAGCCAGACTGTGGAGAAGGCTGGAGCTGCAGCCACA
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS GCA 72 bp TCCCCTGCTACTGGCAGAAGTGGAGGGGCTCCCGGGTaGCAGCTGCCGATGGGTCTTCTTGTGTCTGTTGAG +
Preference number: 6 (lower is better)
Translates to: SPATGRSGGAPG*QLPMGLLVSVE
Trigger: CTCAACAGACACAAGAAGACCCATCGGCAGCTGGCACCCGGGAGCCCCTCCACTTCTGCCAGTAGCAGGGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS GCA 72 bp CAGCTCCAGCCTTCTCCACAGTCTGGCTTGGGAGTGTaGTGGCTGGAGCAGCTGCGTAGGCAGCTGGTTCAG +
Preference number: 6 (lower is better)
Translates to: QLQPSPQSGLGV*WLEQLRRQLVQ
Trigger: CTGAACCAGCTGCCTACGCAGCTGCTCCAGCCAGCACACTCCCAAGCCAGACTGTGGAGAAGGCTGGAGCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS CCA 72 bp GCGAGGCAGTTTGGAGTTGACGCTTCACATCCGATATaGGCATGTCCCTCGCGATCCAGGGCCCCTGCGCCA +
Preference number: 6 (lower is better)
Translates to: ARQFGVDASHPI*ACPSRSRAPAP
Trigger: TGGCGCAGGGGCCCTGGATCGCGAGGGACATGCCCATATCGGATGTGAAGCGTCAACTCCAAACTGCCTCGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS TCA 72 bp CCTGCAAGCCAAAGGGCACAAGGCAGTGCGGGCACTTaGCAGTTTTACCAGTCCCCAGACCATGGGTGCGAC +
Preference number: 6 (lower is better)
Translates to: PASQRAQGSAGT*QFYQSPDHGCD
Trigger: GTCGCACCCATGGTCTGGGGACTGGTAAAACTGTCAAGTGCCCGCACTGCCTTGTGCCCTTTGGCTTGCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS GCA 72 bp ATCTTCCCGCAACGGCCGCAGGTCAACAGATCTGGGTaGTTGTCGGTCCATGGCTGGCGGTCGGAAGACTTA +
Preference number: 6 (lower is better)
Translates to: IFPQRPQVNRSG*LSVHGWRSEDL
Trigger: TAAGTCTTCCGACCGCCAGCCATGGACCGACAAGCACCCAGATCTGTTGACCTGCGGCCGTTGCGGGAAGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS CCA 72 bp AAAGATCTTCCCGCAACGGCCGCAGGTCAACAGATCTaGGTGCTTGTCGGTCCATGGCTGGCGGTCGGAAGA +
Preference number: 6 (lower is better)
Translates to: KDLPATAAGQQI*VLVGPWLAVGR
Trigger: TCTTCCGACCGCCAGCCATGGACCGACAAGCACCCAGATCTGTTGACCTGCGGCCGTTGCGGGAAGATCTTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS CCA 72 bp TGCGGGCACTTGACAGTTTTACCAGTCCCCAGACCATaGGTGCGACGGTGGCGGTTGAGCTTGCTACTCTGG +
Preference number: 6 (lower is better)
Translates to: CGHLTVLPVPRP*VRRWRLSLLLW
Trigger: CCAGAGTAGCAAGCTCAACCGCCACCGTCGCACCCATGGTCTGGGGACTGGTAAAACTGTCAAGTGCCCGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS CAA 72 bp TTCCCGCAACGGCCGCAGGTCAACAGATCTGGGTGCTaGTCGGTCCATGGCTGGCGGTCGGAAGACTTAGAA +
Preference number: 6 (lower is better)
Translates to: FPQRPQVNRSGC*SVHGWRSEDLE
Trigger: TTCTAAGTCTTCCGACCGCCAGCCATGGACCGACAAGCACCCAGATCTGTTGACCTGCGGCCGTTGCGGGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS CAA 72 bp GCCTGCAAGCCAAAGGGCACAAGGCAGTGCGGGCACTaGACAGTTTTACCAGTCCCCAGACCATGGGTGCGA +
Preference number: 6 (lower is better)
Translates to: ACKPKGTRQCGH*TVLPVPRPWVR
Trigger: TCGCACCCATGGTCTGGGGACTGGTAAAACTGTCAAGTGCCCGCACTGCCTTGTGCCCTTTGGCTTGCAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS CAA 90 bp GGAAAGATCTTCCCGCAACGGCCGCAGGTCAACAGATCTGGGTGCTaGTCGGTCCATGGCTGGCGGTCGGAAGACTTAGAACTCAGAGGC +
Preference number: 6 (lower is better)
Translates to: GKIFPQRPQVNRSGC*SVHGWRSEDLELRG
Trigger: GCCTCTGAGTTCTAAGTCTTCCGACCGCCAGCCATGGACCGACAAGCACCCAGATCTGTTGACCTGCGGCCGTTGCGGGAAGATCTTTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS CAA 90 bp GAACGCATGTGGACCTTGAGGTTGCTGAAAGAGCTGAGGGTCTTCTaGCACACATCACAGGTGGGGCTCCGCCGGGCAGCACTGCTCACT +
Preference number: 6 (lower is better)
Translates to: ERMWTLRLLKELRVF*HTSQVGLRRAALLT
Trigger: AGTGAGCAGTGCTGCCCGGCGGAGCCCCACCTGTGATGTGTGCAAGAAGACCCTCAGCTCTTTCAGCAACCTCAAGGTCCACATGCGTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS GCA 72 bp GAGCCTCTGGGGTATCTAGGTGTTGTGTCTGGTAGATaGATAGCCCATGGTCCCACTGGGCGTGGCACAGCA +
Preference number: 6 (lower is better)
Translates to: EPLGYLGVVSGR*IAHGPTGRGTA
Trigger: TGCTGTGCCACGCCCAGTGGGACCATGGGCTATGCATCTACCAGACACAACACCTAGATACCCCAGAGGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS CCA 72 bp CAGGTCAACAGATCTGGGTGCTTGTCGGTCCATGGCTaGCGGTCGGAAGACTTAGAACTCAGAGGCATCCGC +
Preference number: 6 (lower is better)
Translates to: QVNRSGCLSVHG*RSEDLELRGIR
Trigger: GCGGATGCCTCTGAGTTCTAAGTCTTCCGACCGCCAGCCATGGACCGACAAGCACCCAGATCTGTTGACCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS CCA 72 bp GCCGCAGGTCAACAGATCTGGGTGCTTGTCGGTCCATaGCTGGCGGTCGGAAGACTTAGAACTCAGAGGCAT +
Preference number: 6 (lower is better)
Translates to: AAGQQIWVLVGP*LAVGRLRTQRH
Trigger: ATGCCTCTGAGTTCTAAGTCTTCCGACCGCCAGCCATGGACCGACAAGCACCCAGATCTGTTGACCTGCGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS TCA 72 bp CTGGAGGCAGCTCAGAGCCTTCAGCTCTTTGGATTCTaGGATGGGGTCGGAGACTTGGAGAAGCTGACAGCC +
Preference number: 6 (lower is better)
Translates to: LEAAQSLQLFGF*DGVGDLEKLTA
Trigger: GGCTGTCAGCTTCTCCAAGTCTCCGACCCCATCTCAGAATCCAAAGAGCTGAAGGCTCTGAGCTGCCTCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2
CDS GCA 72 bp CTCACACTTGCCCCCAGGCCCATGACTCTTCCTAGGTaGTGTCTTCTCGATCTTTACAGGGTCAGTCCTCTC +
Preference number: 6 (lower is better)
Translates to: LTLAPRPMTLPR*CLLDLYRVSPL
Trigger: GAGAGGACTGACCCTGTAAAGATCGAGAAGACAGCACCTAGGAAGAGTCATGGGCCTGGGGGCAAGTGTGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108453.2