RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZFP281 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000041483

Ensembl transcript IDs: ENSMUST00000047734.15, ENSMUST00000112046.2

Found 296 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AAAAAGTGGTTTAGAGCAGAGCCACTGCCTATCAGTAGCTTCAAATaGCAATTAGCGTTCATAGCAAGTTTTGATGACAAGATCCCTGTA +
Preference number: 1 (lower is better)
Translates to: KKWFRAEPLPISSFK*QLAFIASFDDKIPV
Trigger: TACAGGGATCTTGTCATCAAAACTTGCTATGAACGCTAATTGCCATTTGAAGCTACTGATAGGCAGTGGCTCTGCTCTAAACCACTTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
3UTR CCA 90 bp TTCCAGGCTTTGATCAAAGATCTAAGAATATTTGTTCTACCAATCTaGAATGAATCTGGGTTTGGAAGTGTGGAGTACATTGAAAAGCTG +
Preference number: 1 (lower is better)
Translates to: FQALIKDLRIFVLPI*NESGFGSVEYIEKL
Trigger: CAGCTTTTCAATGTACTCCACACTTCCAAACCCAGATTCATTCCAGATTGGTAGAACAAATATTCTTAGATCTTTGATCAAAGCCTGGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
3UTR-3UTR TCA 90 bp GAGAGAGAGATCCTACAGCTTAAGAGATACAGGGGTAAAGGTCCTCTCCATCTTTCTACCAATCTGGAATaGATCTGGGTTTGGAAGTGT +
Preference number: 2 (lower is better)
Translates to: EREILQLKRYRGKGPLHLSTNLE*IWVWKC
Trigger: ACACTTCCAAACCCAGATTCATTCCAGATTGGTAGA...AAGATGGAGAGGACCTTTACCCCTGTATCTCTTAAGCTGTAGGATCTCTCTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
3UTR-3UTR TCA 90 bp GCAAACAACCAGTGGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACTGCCACCAGGTAGGATaGCAACCCTTTGACATCTAT +
Preference number: 2 (lower is better)
Translates to: ANNQWDFSDVRRVHKTKHCHQVG*QPFDIY
Trigger: ATAGATGTCAAAGGGTTGTCATCCTACCTGGTGGCA...GTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTTGTTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
3UTR-3UTR TCA 90 bp GGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAAAAGTACATGCCACCAGGTAGGATaGCAACCCTTTGACATCTAT +
Preference number: 2 (lower is better)
Translates to: GTFLTSEEFIRLNTTKSTCHQVG*QPFDIY
Trigger: ATAGATGTCAAAGGGTTGTCATCCTACCTGGTGGCA...TGTACTTTTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
3UTR-3UTR CCA 90 bp AACCAGTGGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAACTGGGTTTGGAAGTGTaGAGTACATTGAAAAGCTGC +
Preference number: 2 (lower is better)
Translates to: NQWDFSDVRRVHKTKHHQLGLEV*STLKSC
Trigger: GCAGCTTTTCAATGTACTCCACACTTCCAAACCCAG...TTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
3UTR-3UTR TCA 90 bp GCAAACAACCAGTGGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACAGGATGACAACCCTTTaGCATCTATGTATAGCTTGT +
Preference number: 2 (lower is better)
Translates to: ANNQWDFSDVRRVHKTKHRMTTL*HLCIAC
Trigger: ACAAGCTATACATAGATGTCAAAGGGTTGTCATCCT...GTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTTGTTTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
3UTR-3UTR GCA 90 bp GGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAAAAGTACATTAGAGCAGAGCCACTaGCTATCAGTAGCTTCAAAT +
Preference number: 2 (lower is better)
Translates to: GTFLTSEEFIRLNTTKSTLEQSH*LSVASN
Trigger: ATTTGAAGCTACTGATAGGCAGTGGCTCTGCTCTAA...TGTACTTTTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
3UTR-3UTR CCA 90 bp ATCACTCTAAAATTGAAACCATCAAGACAGGGAGAAGGAACAAGAAGGCCCAGACAGCCTTGTTACAGGTaGATAAAGAGGATGGTTTTT +
Preference number: 2 (lower is better)
Translates to: ITLKLKPSRQGEGTRRPRQPCYR*IKRMVF
Trigger: AAAAACCATCCTCTTTATCCACCTGTAACAAGGCTG...TCTGGGCCTTCTTGTTCCTTCTCCCTGTCTTGATGGTTTCAATTTTAGAGTGAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
3UTR-3UTR CCA 90 bp TCATTACTGAATACACACTCTTATCTGTTACACAAGCTCTGCCACCAGGTAGGACAGCCTTGTTACAGGTaGATAAAGAGGATGGTTTTT +
Preference number: 2 (lower is better)
Translates to: SLLNTHSYLLHKLCHQVGQPCYR*IKRMVF
Trigger: AAAAACCATCCTCTTTATCCACCTGTAACAAGGCTG...TCCTACCTGGTGGCAGAGCTTGTGTAACAGATAAGAGTGTGTATTCAGTAATGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
3UTR-3UTR TCA 90 bp GGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAAAAGTACAATCCCTGTACAATACTaGCTAATACACCCCTTCAAA +
Preference number: 2 (lower is better)
Translates to: GTFLTSEEFIRLNTTKSTIPVQY*LIHPFK
Trigger: TTTGAAGGGGTGTATTAGTCAGTATTGTACAGGGAT...TGTACTTTTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
3UTR-3UTR CCA 90 bp ATCACTCTAAAATTGAAACCATCAAGACAGGGAGAAGGAACAAGAAGGCCCAGATTTGTTCTACCAATCTaGAATGAATCTGGGTTTGGA +
Preference number: 2 (lower is better)
Translates to: ITLKLKPSRQGEGTRRPRFVLPI*NESGFG
Trigger: TCCAAACCCAGATTCATTCCAGATTGGTAGAACAAA...TCTGGGCCTTCTTGTTCCTTCTCCCTGTCTTGATGGTTTCAATTTTAGAGTGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
3UTR-3UTR CCA 90 bp GGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAAAAGTACAACAATTGCTAAAAAGTaGTTTAGAGCAGAGCCACTG +
Preference number: 2 (lower is better)
Translates to: GTFLTSEEFIRLNTTKSTTIAKK*FRAEPL
Trigger: CAGTGGCTCTGCTCTAAACCACTTTTTAGCAATTGT...TGTACTTTTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
3UTR TCA 72 bp ACACAAGCTCTGCCACCAGGTAGGATGACAACCCTTTaGCATCTATGTATAGCTTGTACGTGGAAGTCGGTA +
Preference number: 3 (lower is better)
Translates to: TQALPPGRMTTL*HLCIACTWKSV
Trigger: TACCGACTTCCACGTACAAGCTATACATAGATGTCAAAGGGTTGTCATCCTACCTGGTGGCAGAGCTTGTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
3UTR-3UTR CAA 90 bp GGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAAAAGTACAGGAATGAATCTGGGTTaGGAAGTGTGGAGTACATTG +
Preference number: 3 (lower is better)
Translates to: GTFLTSEEFIRLNTTKSTGMNLG*EVWSTL
Trigger: CAATGTACTCCACACTTCCAAACCCAGATTCATTCC...TGTACTTTTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
3UTR CCA 72 bp TTTAGAGCAGAGCCACTGCCTATCAGTAGCTTCAAATaGCAATTAGCGTTCATAGCAAGTTTTGATGACAAG +
Preference number: 3 (lower is better)
Translates to: FRAEPLPISSFK*QLAFIASFDDK
Trigger: CTTGTCATCAAAACTTGCTATGAACGCTAATTGCCATTTGAAGCTACTGATAGGCAGTGGCTCTGCTCTAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
3UTR-3UTR CAA 90 bp AATCACTCTAAAATTGAAACCATCAAGACAGGGAGAAGGAACAAGAAGGCCCAGAATGGAATTACAGCCTaGTTACAGGTGGATAAAGAG +
Preference number: 3 (lower is better)
Translates to: NHSKIETIKTGRRNKKAQNGITA*LQVDKE
Trigger: CTCTTTATCCACCTGTAACAAGGCTGTAATTCCATT...CTGGGCCTTCTTGTTCCTTCTCCCTGTCTTGATGGTTTCAATTTTAGAGTGATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
3UTR-3UTR CAA 90 bp AACCAGTGGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAATTGCATTTAAAACTTTaGGGCTATTCCCTGACAATC +
Preference number: 3 (lower is better)
Translates to: NQWDFSDVRRVHKTKHHQLHLKL*GYSLTI
Trigger: GATTGTCAGGGAATAGCCCAAAAGTTTTAAATGCAA...TTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
3UTR-3UTR CAA 90 bp ATCACTCTAAAATTGAAACCATCAAGACAGGGAGAAGGAACAAGAAGGCCCAGAGAAGTGTGGAGTACATaGAAAAGCTGCAACAAAATA +
Preference number: 3 (lower is better)
Translates to: ITLKLKPSRQGEGTRRPREVWST*KSCNKI
Trigger: TATTTTGTTGCAGCTTTTCAATGTACTCCACACTTC...TCTGGGCCTTCTTGTTCCTTCTCCCTGTCTTGATGGTTTCAATTTTAGAGTGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
3UTR-3UTR CAA 90 bp AATCACTCTAAAATTGAAACCATCAAGACAGGGAGAAGGAACAAGAAGGCCCAGGAAGTGTGGAGTACATaGAAAAGCTGCAACAAAATA +
Preference number: 3 (lower is better)
Translates to: NHSKIETIKTGRRNKKAQEVWST*KSCNKI
Trigger: TATTTTGTTGCAGCTTTTCAATGTACTCCACACTTC...CTGGGCCTTCTTGTTCCTTCTCCCTGTCTTGATGGTTTCAATTTTAGAGTGATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
3UTR-3UTR CAA 90 bp GGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAAAAGTACATTGCATTTAAAACTTTaGGGCTATTCCCTGACAATC +
Preference number: 3 (lower is better)
Translates to: GTFLTSEEFIRLNTTKSTLHLKL*GYSLTI
Trigger: GATTGTCAGGGAATAGCCCAAAAGTTTTAAATGCAA...TGTACTTTTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp GAGAGAGAGATCCTACAGCTTAAGAGATACAGGGGTAAAGGTCCTCTCCATCTTCGCTACCACCGCTACTaGTGGGACCGCCGCCGCCGC +
Preference number: 4 (lower is better)
Translates to: EREILQLKRYRGKGPLHLRYHRY*WDRRRR
Trigger: GCGGCGGCGGCGGTCCCAGCAGTAGCGGTGGTAGCG...AAGATGGAGAGGACCTTTACCCCTGTATCTCTTAAGCTGTAGGATCTCTCTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp AACCAGTGGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAACGCTACCACCGCTACTaGTGGGACCGCCGCCGCCGC +
Preference number: 4 (lower is better)
Translates to: NQWDFSDVRRVHKTKHHQRYHRY*WDRRRR
Trigger: GCGGCGGCGGCGGTCCCAGCAGTAGCGGTGGTAGCG...TTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp ATCACTCTAAAATTGAAACCATCAAGACAGGGAGAAGGAACAAGAAGGCCCAGATGGCGCTGCCGGAGCTaGCGCCGGAGCCGCTACCAC +
Preference number: 4 (lower is better)
Translates to: ITLKLKPSRQGEGTRRPRWRCRS*RRSRYH
Trigger: GTGGTAGCGGCTCCGGCGGCAGCTCCGGCAGCGCCA...TCTGGGCCTTCTTGTTCCTTCTCCCTGTCTTGATGGTTTCAATTTTAGAGTGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp AACCAGTGGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAAGGTGGGCTCCATCTCTaGTCTCCTGCCGCCGCCGCT +
Preference number: 4 (lower is better)
Translates to: NQWDFSDVRRVHKTKHHQGGLHL*SPAAAA
Trigger: AGCGGCGGCGGCAGGAGAGCAGAGATGGAGCCCACC...TTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp CATTACGGTGATAACGTACAGAATTCCCATGCGTTATTACACTTTCCTGAGAGTGGTGGGCTCCATCTCTaGTCTCCTGCCGCCGCCGCT +
Preference number: 4 (lower is better)
Translates to: HYGDNVQNSHALLHFPESGGLHL*SPAAAA
Trigger: AGCGGCGGCGGCAGGAGAGCAGAGATGGAGCCCACC...ACTCTCAGGAAAGTGTAATAACGCATGGGAATTCTGTACGTTATCACCGTAATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp AATCACTCTAAAATTGAAACCATCAAGACAGGGAGAAGGAACAAGAAGGCCCAGTGGTGCTGGGCCGGTTaGTGCTGGGCATGCTGGTGC +
Preference number: 4 (lower is better)
Translates to: NHSKIETIKTGRRNKKAQWCWAG*CWACWC
Trigger: GCACCAGCATGCCCAGCAGCAACCGGCCCAGCACCA...CTGGGCCTTCTTGTTCCTTCTCCCTGTCTTGATGGTTTCAATTTTAGAGTGATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR TCA 90 bp GCAAACAACCAGTGGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCCGCCGGCTCCTTCTTaGAAGTCATGTCCGGGGCTG +
Preference number: 4 (lower is better)
Translates to: ANNQWDFSDVRRVHKTKHPPAPS*KSCPGL
Trigger: CAGCCCCGGACATGACTTTCAAGAAGGAGCCGGCGG...GTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTTGTTTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp CATTACGGTGATAACGTACAGAATTCCCATGCGTTATTACACTTTCCTGAGAGTTGGTGGTGGGACGGCTaGTCCTCGGGATCCGCAGGT +
Preference number: 4 (lower is better)
Translates to: HYGDNVQNSHALLHFPESWWWDG*SSGSAG
Trigger: ACCTGCGGATCCCGAGGAGCAGCCGTCCCACCACCA...ACTCTCAGGAAAGTGTAATAACGCATGGGAATTCTGTACGTTATCACCGTAATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp CATTACGGTGATAACGTACAGAATTCCCATGCGTTATTACACTTTCCTGAGAGTTGGTGCTGGGCCGGTTaGTGCTGGGCATGCTGGTGC +
Preference number: 4 (lower is better)
Translates to: HYGDNVQNSHALLHFPESWCWAG*CWACWC
Trigger: GCACCAGCATGCCCAGCAGCAACCGGCCCAGCACCA...ACTCTCAGGAAAGTGTAATAACGCATGGGAATTCTGTACGTTATCACCGTAATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp GAGAGAGAGATCCTACAGCTTAAGAGATACAGGGGTAAAGGTCCTCTCCATCTTAGAAGACTGAGGTCTTaGATGACGCCGTGGCTCCCC +
Preference number: 4 (lower is better)
Translates to: EREILQLKRYRGKGPLHLRRLRS*MTPWLP
Trigger: GGGGAGCCACGGCGTCATCCAAGACCTCAGTCTTCT...AAGATGGAGAGGACCTTTACCCCTGTATCTCTTAAGCTGTAGGATCTCTCTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp GCAAACAACCAGTGGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACTGGGCCGGTTGCTGCTaGGCATGCTGGTGCAGAAGA +
Preference number: 4 (lower is better)
Translates to: ANNQWDFSDVRRVHKTKHWAGCC*ACWCRR
Trigger: TCTTCTGCACCAGCATGCCCAGCAGCAACCGGCCCA...GTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTTGTTTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp ATCACTCTAAAATTGAAACCATCAAGACAGGGAGAAGGAACAAGAAGGCCCAGATGGGCCGGTTGCTGCTaGGCATGCTGGTGCAGAAGA +
Preference number: 4 (lower is better)
Translates to: ITLKLKPSRQGEGTRRPRWAGCC*ACWCRR
Trigger: TCTTCTGCACCAGCATGCCCAGCAGCAACCGGCCCA...TCTGGGCCTTCTTGTTCCTTCTCCCTGTCTTGATGGTTTCAATTTTAGAGTGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR TCA 90 bp GAGAGAGAGATCCTACAGCTTAAGAGATACAGGGGTAAAGGTCCTCTCCATCTTGGTGGTAGGAGCTCCTaGAAGCAGCACTACAGTGAT +
Preference number: 4 (lower is better)
Translates to: EREILQLKRYRGKGPLHLGGRSS*KQHYSD
Trigger: ATCACTGTAGTGCTGCTTTCAGGAGCTCCTACCACC...AAGATGGAGAGGACCTTTACCCCTGTATCTCTTAAGCTGTAGGATCTCTCTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR TCA 90 bp AACCAGTGGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAACTGACCCCTGCAGACTaGATGACTGACTGCTGGGAG +
Preference number: 4 (lower is better)
Translates to: NQWDFSDVRRVHKTKHHQLTPAD*MTDCWE
Trigger: CTCCCAGCAGTCAGTCATTCAGTCTGCAGGGGTCAG...TTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp AGAAGACATTCACAGAATCACTTAATGGAATTACAGCCTTGTTACAGGTGGATATGGTGGTGGGACGGCTaGTCCTCGGGATCCGCAGGT +
Preference number: 4 (lower is better)
Translates to: RRHSQNHLMELQPCYRWIWWWDG*SSGSAG
Trigger: ACCTGCGGATCCCGAGGAGCAGCCGTCCCACCACCA...TATCCACCTGTAACAAGGCTGTAATTCCATTAAGTGATTCTGTGAATGTCTTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp AATCACTCTAAAATTGAAACCATCAAGACAGGGAGAAGGAACAAGAAGGCCCAGGGTTGCTGCTGGGCATaGTGGTGCAGAAGACTGAGG +
Preference number: 4 (lower is better)
Translates to: NHSKIETIKTGRRNKKAQGCCWA*WCRRLR
Trigger: CCTCAGTCTTCTGCACCAGCATGCCCAGCAGCAACC...CTGGGCCTTCTTGTTCCTTCTCCCTGTCTTGATGGTTTCAATTTTAGAGTGATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp AATCACTCTAAAATTGAAACCATCAAGACAGGGAGAAGGAACAAGAAGGCCCAGGCTTTGGCTCCTGGTTaGCGTGCTCATCAGTCCTGC +
Preference number: 4 (lower is better)
Translates to: NHSKIETIKTGRRNKKAQALAPG*RAHQSC
Trigger: GCAGGACTGATGAGCACGGCAACCAGGAGCCAAAGC...CTGGGCCTTCTTGTTCCTTCTCCCTGTCTTGATGGTTTCAATTTTAGAGTGATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp GAGAGAGAGATCCTACAGCTTAAGAGATACAGGGGTAAAGGTCCTCTCCATCTTCCACACGTGCGCCTGTaGTTCAACAATCTGTCAGTC +
Preference number: 4 (lower is better)
Translates to: EREILQLKRYRGKGPLHLPHVRL*FNNLSV
Trigger: GACTGACAGATTGTTGAAGCACAGGCGCACGTGTGG...AAGATGGAGAGGACCTTTACCCCTGTATCTCTTAAGCTGTAGGATCTCTCTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp GAGAGAGAGATCCTACAGCTTAAGAGATACAGGGGTAAAGGTCCTCTCCATCTTTGGCTTCACCACACGTaGGCCTGTGCTTCAACAATC +
Preference number: 4 (lower is better)
Translates to: EREILQLKRYRGKGPLHLWLHHT*ACASTI
Trigger: GATTGTTGAAGCACAGGCGCACGTGTGGTGAAGCCA...AAGATGGAGAGGACCTTTACCCCTGTATCTCTTAAGCTGTAGGATCTCTCTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp GCAAACAACCAGTGGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACAGAAGACTGAGGTCTTaGATGACGCCGTGGCTCCCC +
Preference number: 4 (lower is better)
Translates to: ANNQWDFSDVRRVHKTKHRRLRS*MTPWLP
Trigger: GGGGAGCCACGGCGTCATCCAAGACCTCAGTCTTCT...GTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTTGTTTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp GCAAACAACCAGTGGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCTACACTGGCTGCACTaGAAAGGCCTTTCGCCCGTG +
Preference number: 4 (lower is better)
Translates to: ANNQWDFSDVRRVHKTKHLHWLH*KGLSPV
Trigger: CACGGGCGAAAGGCCTTTCCAGTGCAGCCAGTGTAG...GTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTTGTTTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR TCA 90 bp CTATTTGTAAATTGGATATTCCATTACGGTGATAACGTACAGAATTCCCATGCGCCGCCGGCTCCTTCTTaGAAGTCATGTCCGGGGCTG +
Preference number: 4 (lower is better)
Translates to: LFVNWIFHYGDNVQNSHAPPAPS*KSCPGL
Trigger: CAGCCCCGGACATGACTTTCAAGAAGGAGCCGGCGG...CGCATGGGAATTCTGTACGTTATCACCGTAATGGAATATCCAATTTACAAATAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR TCA 90 bp GAGAGAGAGATCCTACAGCTTAAGAGATACAGGGGTAAAGGTCCTCTCCATCTTGCTTCCTCTTGGCTTTaGTTCCCTGAGATTCTGGCT +
Preference number: 4 (lower is better)
Translates to: EREILQLKRYRGKGPLHLASSWL*FPEILA
Trigger: AGCCAGAATCTCAGGGAATCAAAGCCAAGAGGAAGC...AAGATGGAGAGGACCTTTACCCCTGTATCTCTTAAGCTGTAGGATCTCTCTCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR TCA 90 bp GGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAAAAGTACACCCCTGCAGACTGAATaGCTGACTGCTGGGAGACCA +
Preference number: 4 (lower is better)
Translates to: GTFLTSEEFIRLNTTKSTPLQTE*LTAGRP
Trigger: TGGTCTCCCAGCAGTCAGTCATTCAGTCTGCAGGGG...TGTACTTTTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp CATTACGGTGATAACGTACAGAATTCCCATGCGTTATTACACTTTCCTGAGAGTGGTTGCTGCTGGGCATaGTGGTGCAGAAGACTGAGG +
Preference number: 4 (lower is better)
Translates to: HYGDNVQNSHALLHFPESGCCWA*WCRRLR
Trigger: CCTCAGTCTTCTGCACCAGCATGCCCAGCAGCAACC...ACTCTCAGGAAAGTGTAATAACGCATGGGAATTCTGTACGTTATCACCGTAATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp GGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAAAAGTACATACTCTGGGGGAAGGTaGGCTCCATCTCTGCTCTCC +
Preference number: 4 (lower is better)
Translates to: GTFLTSEEFIRLNTTKSTYSGGR*APSLLS
Trigger: GGAGAGCAGAGATGGAGCCCACCTTCCCCCAGAGTA...TGTACTTTTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp CATTACGGTGATAACGTACAGAATTCCCATGCGTTATTACACTTTCCTGAGAGTTACTCTGGGGGAAGGTaGGCTCCATCTCTGCTCTCC +
Preference number: 4 (lower is better)
Translates to: HYGDNVQNSHALLHFPESYSGGR*APSLLS
Trigger: GGAGAGCAGAGATGGAGCCCACCTTCCCCCAGAGTA...ACTCTCAGGAAAGTGTAATAACGCATGGGAATTCTGTACGTTATCACCGTAATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp ATCACTCTAAAATTGAAACCATCAAGACAGGGAGAAGGAACAAGAAGGCCCAGATCCTGCTTTGGCTCCTaGTTGCCGTGCTCATCAGTC +
Preference number: 4 (lower is better)
Translates to: ITLKLKPSRQGEGTRRPRSCFGS*LPCSSV
Trigger: GACTGATGAGCACGGCAACCAGGAGCCAAAGCAGGA...TCTGGGCCTTCTTGTTCCTTCTCCCTGTCTTGATGGTTTCAATTTTAGAGTGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR TCA 90 bp TCATTACTGAATACACACTCTTATCTGTTACACAAGCTCTGCCACCAGGTAGGACAGGTTTCTCCTGCTTaGTGCTCACCAAGGACTGCA +
Preference number: 4 (lower is better)
Translates to: SLLNTHSYLLHKLCHQVGQVSPA*CSPRTA
Trigger: TGCAGTCCTTGGTGAGCATCAAGCAGGAGAAACCTG...TCCTACCTGGTGGCAGAGCTTGTGTAACAGATAAGAGTGTGTATTCAGTAATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR TCA 90 bp ATCACTCTAAAATTGAAACCATCAAGACAGGGAGAAGGAACAAGAAGGCCCAGACAGGTTTCTCCTGCTTaGTGCTCACCAAGGACTGCA +
Preference number: 4 (lower is better)
Translates to: ITLKLKPSRQGEGTRRPRQVSPA*CSPRTA
Trigger: TGCAGTCCTTGGTGAGCATCAAGCAGGAGAAACCTG...TCTGGGCCTTCTTGTTCCTTCTCCCTGTCTTGATGGTTTCAATTTTAGAGTGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR TCA 90 bp ATCACTCTAAAATTGAAACCATCAAGACAGGGAGAAGGAACAAGAAGGCCCAGATGCAGACTGAATGACTaGCTGCTGGGAGACCATGTG +
Preference number: 4 (lower is better)
Translates to: ITLKLKPSRQGEGTRRPRCRLND*LLGDHV
Trigger: CACATGGTCTCCCAGCAGTCAGTCATTCAGTCTGCA...TCTGGGCCTTCTTGTTCCTTCTCCCTGTCTTGATGGTTTCAATTTTAGAGTGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR TCA 90 bp AATCACTCTAAAATTGAAACCATCAAGACAGGGAGAAGGAACAAGAAGGCCCAGTGCAGACTGAATGACTaGCTGCTGGGAGACCATGTG +
Preference number: 4 (lower is better)
Translates to: NHSKIETIKTGRRNKKAQCRLND*LLGDHV
Trigger: CACATGGTCTCCCAGCAGTCAGTCATTCAGTCTGCA...CTGGGCCTTCTTGTTCCTTCTCCCTGTCTTGATGGTTTCAATTTTAGAGTGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR TCA 90 bp GAGAGAGAGATCCTACAGCTTAAGAGATACAGGGGTAAAGGTCCTCTCCATCTTTGGCTAGTCAATTTCTaGGATGAGGACTGGAAGGCT +
Preference number: 4 (lower is better)
Translates to: EREILQLKRYRGKGPLHLWLVNF*DEDWKA
Trigger: AGCCTTCCAGTCCTCATCTCAGAAATTGACTAGCCA...AAGATGGAGAGGACCTTTACCCCTGTATCTCTTAAGCTGTAGGATCTCTCTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp TCATTACTGAATACACACTCTTATCTGTTACACAAGCTCTGCCACCAGGTAGGAATGCTCACCAAGGACTaGAAGAATCCCCAGGAGGTC +
Preference number: 4 (lower is better)
Translates to: SLLNTHSYLLHKLCHQVGMLTKD*KNPQEV
Trigger: GACCTCCTGGGGATTCTTGCAGTCCTTGGTGAGCAT...TCCTACCTGGTGGCAGAGCTTGTGTAACAGATAAGAGTGTGTATTCAGTAATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp TCATTACTGAATACACACTCTTATCTGTTACACAAGCTCTGCCACCAGGTAGGATCCGCAGGTTTCTCCTaGTTGATGCTCACCAAGGAC +
Preference number: 4 (lower is better)
Translates to: SLLNTHSYLLHKLCHQVGSAGFS*LMLTKD
Trigger: GTCCTTGGTGAGCATCAAGCAGGAGAAACCTGCGGA...TCCTACCTGGTGGCAGAGCTTGTGTAACAGATAAGAGTGTGTATTCAGTAATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp AACCAGTGGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAACCACACGTGCGCCTGTaGTTCAACAATCTGTCAGTC +
Preference number: 4 (lower is better)
Translates to: NQWDFSDVRRVHKTKHHQPHVRL*FNNLSV
Trigger: GACTGACAGATTGTTGAAGCACAGGCGCACGTGTGG...TTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp AACCAGTGGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAATGGCTTCACCACACGTaGGCCTGTGCTTCAACAATC +
Preference number: 4 (lower is better)
Translates to: NQWDFSDVRRVHKTKHHQWLHHT*ACASTI
Trigger: GATTGTTGAAGCACAGGCGCACGTGTGGTGAAGCCA...TTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp AATCACTCTAAAATTGAAACCATCAAGACAGGGAGAAGGAACAAGAAGGCCCAGATGAGGTTTCTGACTTaGGGACAGGACGGCACCTTC +
Preference number: 4 (lower is better)
Translates to: NHSKIETIKTGRRNKKAQMRFLT*GQDGTF
Trigger: GAAGGTGCCGTCCTGTCCCCAAGTCAGAAACCTCAT...CTGGGCCTTCTTGTTCCTTCTCCCTGTCTTGATGGTTTCAATTTTAGAGTGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR TCA 90 bp CATTACGGTGATAACGTACAGAATTCCCATGCGTTATTACACTTTCCTGAGAGTGGTGGTAGGAGCTCCTaGAAGCAGCACTACAGTGAT +
Preference number: 4 (lower is better)
Translates to: HYGDNVQNSHALLHFPESGGRSS*KQHYSD
Trigger: ATCACTGTAGTGCTGCTTTCAGGAGCTCCTACCACC...ACTCTCAGGAAAGTGTAATAACGCATGGGAATTCTGTACGTTATCACCGTAATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR TCA 90 bp AATCACTCTAAAATTGAAACCATCAAGACAGGGAGAAGGAACAAGAAGGCCCAGAACTTCATGCTGCACTaGTCGCACCCAAAGGGTTTC +
Preference number: 4 (lower is better)
Translates to: NHSKIETIKTGRRNKKAQNFMLH*SHPKGF
Trigger: GAAACCCTTTGGGTGCGATCAGTGCAGCATGAAGTT...CTGGGCCTTCTTGTTCCTTCTCCCTGTCTTGATGGTTTCAATTTTAGAGTGATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR TCA 90 bp CTATTTGTAAATTGGATATTCCATTACGGTGATAACGTACAGAATTCCCATGCGCCCCTGCAGACTGAATaGCTGACTGCTGGGAGACCA +
Preference number: 4 (lower is better)
Translates to: LFVNWIFHYGDNVQNSHAPLQTE*LTAGRP
Trigger: TGGTCTCCCAGCAGTCAGTCATTCAGTCTGCAGGGG...CGCATGGGAATTCTGTACGTTATCACCGTAATGGAATATCCAATTTACAAATAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR TCA 90 bp AGAAGACATTCACAGAATCACTTAATGGAATTACAGCCTTGTTACAGGTGGATACTGACCCCTGCAGACTaGATGACTGACTGCTGGGAG +
Preference number: 4 (lower is better)
Translates to: RRHSQNHLMELQPCYRWILTPAD*MTDCWE
Trigger: CTCCCAGCAGTCAGTCATTCAGTCTGCAGGGGTCAG...TATCCACCTGTAACAAGGCTGTAATTCCATTAAGTGATTCTGTGAATGTCTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR TCA 90 bp GCAAACAACCAGTGGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCTGCCCGACTTAAACTaGGAACCGAATGCTTGTGCA +
Preference number: 4 (lower is better)
Translates to: ANNQWDFSDVRRVHKTKHLPDLN*EPNACA
Trigger: TGCACAAGCATTCGGTTCTCAGTTTAAGTCGGGCAG...GTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTTGTTTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR TCA 90 bp TCATTACTGAATACACACTCTTATCTGTTACACAAGCTCTGCCACCAGGTAGGACTGCCCGACTTAAACTaGGAACCGAATGCTTGTGCA +
Preference number: 4 (lower is better)
Translates to: SLLNTHSYLLHKLCHQVGLPDLN*EPNACA
Trigger: TGCACAAGCATTCGGTTCTCAGTTTAAGTCGGGCAG...TCCTACCTGGTGGCAGAGCTTGTGTAACAGATAAGAGTGTGTATTCAGTAATGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp GGTGATAACGTACAGAATTCCCATGCGTTATTACACTTTCCTGAGAGTAAAGCATCCGCAGGTTTCTCCTaGTTGATGCTCACCAAGGAC +
Preference number: 4 (lower is better)
Translates to: GDNVQNSHALLHFPESKASAGFS*LMLTKD
Trigger: GTCCTTGGTGAGCATCAAGCAGGAGAAACCTGCGGA...TGCTTTACTCTCAGGAAAGTGTAATAACGCATGGGAATTCTGTACGTTATCACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp CATTACGGTGATAACGTACAGAATTCCCATGCGTTATTACACTTTCCTGAGAGTCAGTCCTGCTACCGCTaGTCAGTAATACATCGCGGT +
Preference number: 4 (lower is better)
Translates to: HYGDNVQNSHALLHFPESQSCYR*SVIHRG
Trigger: ACCGCGATGTATTACTGAGCAGCGGTAGCAGGACTG...ACTCTCAGGAAAGTGTAATAACGCATGGGAATTCTGTACGTTATCACCGTAATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp ATCACTCTAAAATTGAAACCATCAAGACAGGGAGAAGGAACAAGAAGGCCCAGACGTGCTCATCAGTCCTaGTACCGCTGCTCAGTAATA +
Preference number: 4 (lower is better)
Translates to: ITLKLKPSRQGEGTRRPRRAHQS*YRCSVI
Trigger: TATTACTGAGCAGCGGTAGCAGGACTGATGAGCACG...TCTGGGCCTTCTTGTTCCTTCTCCCTGTCTTGATGGTTTCAATTTTAGAGTGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp CTATTTGTAAATTGGATATTCCATTACGGTGATAACGTACAGAATTCCCATGCGGCTTTGGCTCCTGGTTaGCGTGCTCATCAGTCCTGC +
Preference number: 4 (lower is better)
Translates to: LFVNWIFHYGDNVQNSHAALAPG*RAHQSC
Trigger: GCAGGACTGATGAGCACGGCAACCAGGAGCCAAAGC...CGCATGGGAATTCTGTACGTTATCACCGTAATGGAATATCCAATTTACAAATAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp TCATTACTGAATACACACTCTTATCTGTTACACAAGCTCTGCCACCAGGTAGGAAACATAACCATACTCTaGGGGAAGGTGGGCTCCATC +
Preference number: 4 (lower is better)
Translates to: SLLNTHSYLLHKLCHQVGNITIL*GKVGSI
Trigger: GATGGAGCCCACCTTCCCCCAGAGTATGGTTATGTT...TCCTACCTGGTGGCAGAGCTTGTGTAACAGATAAGAGTGTGTATTCAGTAATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp GGTGATAACGTACAGAATTCCCATGCGTTATTACACTTTCCTGAGAGTAAAGCAATGAGGTTTCTGACTTaGGGACAGGACGGCACCTTC +
Preference number: 4 (lower is better)
Translates to: GDNVQNSHALLHFPESKAMRFLT*GQDGTF
Trigger: GAAGGTGCCGTCCTGTCCCCAAGTCAGAAACCTCAT...TGCTTTACTCTCAGGAAAGTGTAATAACGCATGGGAATTCTGTACGTTATCACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp AGAAGACATTCACAGAATCACTTAATGGAATTACAGCCTTGTTACAGGTGGATACTACACTGGCTGCACTaGAAAGGCCTTTCGCCCGTG +
Preference number: 4 (lower is better)
Translates to: RRHSQNHLMELQPCYRWILHWLH*KGLSPV
Trigger: CACGGGCGAAAGGCCTTTCCAGTGCAGCCAGTGTAG...TATCCACCTGTAACAAGGCTGTAATTCCATTAAGTGATTCTGTGAATGTCTTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp AATCACTCTAAAATTGAAACCATCAAGACAGGGAGAAGGAACAAGAAGGCCCAGAGGCACTGTTGCTGCTaGCAGTTGGTAGGTATCTTC +
Preference number: 4 (lower is better)
Translates to: NHSKIETIKTGRRNKKAQRHCCC*QLVGIF
Trigger: GAAGATACCTACCAACTGCCAGCAGCAACAGTGCCT...CTGGGCCTTCTTGTTCCTTCTCCCTGTCTTGATGGTTTCAATTTTAGAGTGATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp GAGAGAGAGATCCTACAGCTTAAGAGATACAGGGGTAAAGGTCCTCTCCATCTTAGGTGTTTGGGTGCCTaGGCTCAAATTTTCTTCTTG +
Preference number: 4 (lower is better)
Translates to: EREILQLKRYRGKGPLHLRCLGA*AQIFFL
Trigger: CAAGAAGAAAATTTGAGCCCAGGCACCCAAACACCT...AAGATGGAGAGGACCTTTACCCCTGTATCTCTTAAGCTGTAGGATCTCTCTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp AATCACTCTAAAATTGAAACCATCAAGACAGGGAGAAGGAACAAGAAGGCCCAGAGTGATAAAGGTCATTaGCACCCTGCTGCCCGACTT +
Preference number: 4 (lower is better)
Translates to: NHSKIETIKTGRRNKKAQSDKGH*HPAARL
Trigger: AAGTCGGGCAGCAGGGTGCCAATGACCTTTATCACT...CTGGGCCTTCTTGTTCCTTCTCCCTGTCTTGATGGTTTCAATTTTAGAGTGATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR TCA 90 bp GGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAAAAGTACATTGGCTTTGATTCCCTaGGATTCTGGCTTTGGCCTC +
Preference number: 4 (lower is better)
Translates to: GTFLTSEEFIRLNTTKSTLALIP*DSGFGL
Trigger: GAGGCCAAAGCCAGAATCTCAGGGAATCAAAGCCAA...TGTACTTTTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR TCA 90 bp GGTGATAACGTACAGAATTCCCATGCGTTATTACACTTTCCTGAGAGTAAAGCAAACTTCATGCTGCACTaGTCGCACCCAAAGGGTTTC +
Preference number: 4 (lower is better)
Translates to: GDNVQNSHALLHFPESKANFMLH*SHPKGF
Trigger: GAAACCCTTTGGGTGCGATCAGTGCAGCATGAAGTT...TGCTTTACTCTCAGGAAAGTGTAATAACGCATGGGAATTCTGTACGTTATCACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR TCA 90 bp GCAAACAACCAGTGGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACGAGGTGAAGACAAGCTaGCAAATTGGAAACCGTGTC +
Preference number: 4 (lower is better)
Translates to: ANNQWDFSDVRRVHKTKHEVKTS*QIGNRV
Trigger: GACACGGTTTCCAATTTGTCAGCTTGTCTTCACCTC...GTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTTGTTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR TCA 90 bp TCATTACTGAATACACACTCTTATCTGTTACACAAGCTCTGCCACCAGGTAGGAGTGGTTGTGGAGAGGTaGAGACAAGCTGACAAATTG +
Preference number: 4 (lower is better)
Translates to: SLLNTHSYLLHKLCHQVGVVVER*RQADKL
Trigger: CAATTTGTCAGCTTGTCTTCACCTCTCCACAACCAC...TCCTACCTGGTGGCAGAGCTTGTGTAACAGATAAGAGTGTGTATTCAGTAATGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR TCA 90 bp GCAAACAACCAGTGGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACGTGGTTGTGGAGAGGTaGAGACAAGCTGACAAATTG +
Preference number: 4 (lower is better)
Translates to: ANNQWDFSDVRRVHKTKHVVVER*RQADKL
Trigger: CAATTTGTCAGCTTGTCTTCACCTCTCCACAACCAC...GTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTTGTTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR TCA 90 bp AACCAGTGGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAAGAAGGTGTCAACTGCTaGTGTGTAGCATCCAAAGCA +
Preference number: 4 (lower is better)
Translates to: NQWDFSDVRRVHKTKHHQEGVNC*CVASKA
Trigger: TGCTTTGGATGCTACACATCAGCAGTTGACACCTTC...TTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR TCA 90 bp AATCACTCTAAAATTGAAACCATCAAGACAGGGAGAAGGAACAAGAAGGCCCAGGGCTCTATGTCTTTCTaGGGATCAATCTGGCTAGCT +
Preference number: 4 (lower is better)
Translates to: NHSKIETIKTGRRNKKAQGSMSF*GSIWLA
Trigger: AGCTAGCCAGATTGATCCTCAGAAAGACATAGAGCC...CTGGGCCTTCTTGTTCCTTCTCCCTGTCTTGATGGTTTCAATTTTAGAGTGATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp CATTACGGTGATAACGTACAGAATTCCCATGCGTTATTACACTTTCCTGAGAGTCGTGCTCATCAGTCCTaGTACCGCTGCTCAGTAATA +
Preference number: 4 (lower is better)
Translates to: HYGDNVQNSHALLHFPESRAHQS*YRCSVI
Trigger: TATTACTGAGCAGCGGTAGCAGGACTGATGAGCACG...ACTCTCAGGAAAGTGTAATAACGCATGGGAATTCTGTACGTTATCACCGTAATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp AACCAGTGGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAATGGCTTTGGCCTCTTTaGCTTTTTGACGTTAGCGTC +
Preference number: 4 (lower is better)
Translates to: NQWDFSDVRRVHKTKHHQWLWPL*LFDVSV
Trigger: GACGCTAACGTCAAAAAGGCAAAGAGGCCAAAGCCA...TTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp TCATTACTGAATACACACTCTTATCTGTTACACAAGCTCTGCCACCAGGTAGGACCAGACAAGGATTTCTaGCCAACTACGTCTGGTAAC +
Preference number: 4 (lower is better)
Translates to: SLLNTHSYLLHKLCHQVGPDKDF*PTTSGN
Trigger: GTTACCAGACGTAGTTGGGCAGAAATCCTTGTCTGG...TCCTACCTGGTGGCAGAGCTTGTGTAACAGATAAGAGTGTGTATTCAGTAATGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp AACCAGTGGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAACTACTTATCGGGCCTTaGTTGCCACTTGTACTTTGG +
Preference number: 4 (lower is better)
Translates to: NQWDFSDVRRVHKTKHHQLLIGP*LPLVLW
Trigger: CCAAAGTACAAGTGGCAAGCAAGGCCCGATAAGTAG...TTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp AACCAGTGGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAAAAAAGGCACTGTTGCTaGTGGCAGTTGGTAGGTATC +
Preference number: 4 (lower is better)
Translates to: NQWDFSDVRRVHKTKHHQKRHCC*WQLVGI
Trigger: GATACCTACCAACTGCCAGCAGCAACAGTGCCTTTT...TTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTT
44% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp ATCACTCTAAAATTGAAACCATCAAGACAGGGAGAAGGAACAAGAAGGCCCAGAAAAAGGCACTGTTGCTaGTGGCAGTTGGTAGGTATC +
Preference number: 4 (lower is better)
Translates to: ITLKLKPSRQGEGTRRPRKRHCC*WQLVGI
Trigger: GATACCTACCAACTGCCAGCAGCAACAGTGCCTTTT...TCTGGGCCTTCTTGTTCCTTCTCCCTGTCTTGATGGTTTCAATTTTAGAGTGAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp GAGAGAGAGATCCTACAGCTTAAGAGATACAGGGGTAAAGGTCCTCTCCATCTTTTGAAGGTGTTTGGGTaGCTGGGCTCAAATTTTCTT +
Preference number: 4 (lower is better)
Translates to: EREILQLKRYRGKGPLHLLKVFG*LGSNFL
Trigger: AAGAAAATTTGAGCCCAGGCACCCAAACACCTTCAA...AAGATGGAGAGGACCTTTACCCCTGTATCTCTTAAGCTGTAGGATCTCTCTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp CTATTTGTAAATTGGATATTCCATTACGGTGATAACGTACAGAATTCCCATGCGTCCTGCTTTGGCTCCTaGTTGCCGTGCTCATCAGTC +
Preference number: 4 (lower is better)
Translates to: LFVNWIFHYGDNVQNSHASCFGS*LPCSSV
Trigger: GACTGATGAGCACGGCAACCAGGAGCCAAAGCAGGA...CGCATGGGAATTCTGTACGTTATCACCGTAATGGAATATCCAATTTACAAATAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp GCAAACAACCAGTGGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACGATTCCCTGAGATTCTaGCTTTGGCCTCTTTGCCTT +
Preference number: 4 (lower is better)
Translates to: ANNQWDFSDVRRVHKTKHDSLRF*LWPLCL
Trigger: AAGGCAAAGAGGCCAAAGCCAGAATCTCAGGGAATC...GTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTTGTTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp GCAAACAACCAGTGGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCTCCAACCAAAGGTTTaGAAGATGCACTTGGCTTCC +
Preference number: 4 (lower is better)
Translates to: ANNQWDFSDVRRVHKTKHLQPKV*KMHLAS
Trigger: GGAAGCCAAGTGCATCTTCCAAACCTTTGGTTGGAG...GTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTTGTTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp GCAAACAACCAGTGGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACAAACCCATACTACACTaGCTGCACTGGAAAGGCCTT +
Preference number: 4 (lower is better)
Translates to: ANNQWDFSDVRRVHKTKHKPILH*LHWKGL
Trigger: AAGGCCTTTCCAGTGCAGCCAGTGTAGTATGGGTTT...GTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTTGTTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp ATCACTCTAAAATTGAAACCATCAAGACAGGGAGAAGGAACAAGAAGGCCCAGAAAACCCATACTACACTaGCTGCACTGGAAAGGCCTT +
Preference number: 4 (lower is better)
Translates to: ITLKLKPSRQGEGTRRPRKPILH*LHWKGL
Trigger: AAGGCCTTTCCAGTGCAGCCAGTGTAGTATGGGTTT...TCTGGGCCTTCTTGTTCCTTCTCCCTGTCTTGATGGTTTCAATTTTAGAGTGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp GGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAAAAGTACAAGGCACTGTTGCTGCTaGCAGTTGGTAGGTATCTTC +
Preference number: 4 (lower is better)
Translates to: GTFLTSEEFIRLNTTKSTRHCCC*QLVGIF
Trigger: GAAGATACCTACCAACTGCCAGCAGCAACAGTGCCT...TGTACTTTTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp GAGAGAGAGATCCTACAGCTTAAGAGATACAGGGGTAAAGGTCCTCTCCATCTTCCTGTTGGAGGTATTTaGAGTATTCTTGCAACATGC +
Preference number: 4 (lower is better)
Translates to: EREILQLKRYRGKGPLHLPVGGI*SILATC
Trigger: GCATGTTGCAAGAATACTCCAAATACCTCCAACAGG...AAGATGGAGAGGACCTTTACCCCTGTATCTCTTAAGCTGTAGGATCTCTCTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp GGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAAAAGTACAAGTGATAAAGGTCATTaGCACCCTGCTGCCCGACTT +
Preference number: 4 (lower is better)
Translates to: GTFLTSEEFIRLNTTKSTSDKGH*HPAARL
Trigger: AAGTCGGGCAGCAGGGTGCCAATGACCTTTATCACT...TGTACTTTTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp GAGAGAGAGATCCTACAGCTTAAGAGATACAGGGGTAAAGGTCCTCTCCATCTTGAAGTCCTTACTCTATaGTCCACTTCTCCATTAGAG +
Preference number: 4 (lower is better)
Translates to: EREILQLKRYRGKGPLHLEVLTL*STSPLE
Trigger: CTCTAATGGAGAAGTGGACCATAGAGTAAGGACTTC...AAGATGGAGAGGACCTTTACCCCTGTATCTCTTAAGCTGTAGGATCTCTCTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp AACCAGTGGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAAACCTGTAACTCTGGCTaGTGGGTGTCTTTACTCTTG +
Preference number: 4 (lower is better)
Translates to: NQWDFSDVRRVHKTKHHQTCNSG*WVSLLL
Trigger: CAAGAGTAAAGACACCCACCAGCCAGAGTTACAGGT...TTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR TCA 90 bp GCAAACAACCAGTGGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACGAACTTGTATTTCCCTaGGACAACACAGCCAGGTTA +
Preference number: 4 (lower is better)
Translates to: ANNQWDFSDVRRVHKTKHELVFP*DNTARL
Trigger: TAACCTGGCTGTGTTGTCTCAGGGAAATACAAGTTC...GTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTTGTTTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR TCA 90 bp ATCACTCTAAAATTGAAACCATCAAGACAGGGAGAAGGAACAAGAAGGCCCAGAGAACTTGTATTTCCCTaGGACAACACAGCCAGGTTA +
Preference number: 4 (lower is better)
Translates to: ITLKLKPSRQGEGTRRPRELVFP*DNTARL
Trigger: TAACCTGGCTGTGTTGTCTCAGGGAAATACAAGTTC...TCTGGGCCTTCTTGTTCCTTCTCCCTGTCTTGATGGTTTCAATTTTAGAGTGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR TCA 90 bp GAGAGAGAGATCCTACAGCTTAAGAGATACAGGGGTAAAGGTCCTCTCCATCTTATTCCAGACTTGTCGTaGCAAGACTTAATTTCAGCA +
Preference number: 4 (lower is better)
Translates to: EREILQLKRYRGKGPLHLIPDLS*QDLISA
Trigger: TGCTGAAATTAAGTCTTGTCACGACAAGTCTGGAAT...AAGATGGAGAGGACCTTTACCCCTGTATCTCTTAAGCTGTAGGATCTCTCTCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR TCA 90 bp GCAAACAACCAGTGGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCTCCTTCTGTGTTTCTaGTTTGCCAGAGTACTGATC +
Preference number: 4 (lower is better)
Translates to: ANNQWDFSDVRRVHKTKHLLLCF*FARVLI
Trigger: GATCAGTACTCTGGCAAATCAGAAACACAGAAGGAG...GTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTTGTTTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR TCA 90 bp ATCACTCTAAAATTGAAACCATCAAGACAGGGAGAAGGAACAAGAAGGCCCAGAGCTTGTTTTATCATTTaGAGGTGTTTGGGTGCCTGG +
Preference number: 4 (lower is better)
Translates to: ITLKLKPSRQGEGTRRPRACFII*RCLGAW
Trigger: CCAGGCACCCAAACACCTTCAAATGATAAAACAAGC...TCTGGGCCTTCTTGTTCCTTCTCCCTGTCTTGATGGTTTCAATTTTAGAGTGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR TCA 90 bp AACCAGTGGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAAGCTTGTTTTATCATTTaGAGGTGTTTGGGTGCCTGG +
Preference number: 4 (lower is better)
Translates to: NQWDFSDVRRVHKTKHHQACFII*RCLGAW
Trigger: CCAGGCACCCAAACACCTTCAAATGATAAAACAAGC...TTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR TCA 90 bp GGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAAAAGTACAGAAGGTGTCAACTGCTaGTGTGTAGCATCCAAAGCA +
Preference number: 4 (lower is better)
Translates to: GTFLTSEEFIRLNTTKSTEGVNC*CVASKA
Trigger: TGCTTTGGATGCTACACATCAGCAGTTGACACCTTC...TGTACTTTTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR TCA 90 bp GGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAAAAGTACAGGCTCTATGTCTTTCTaGGGATCAATCTGGCTAGCT +
Preference number: 4 (lower is better)
Translates to: GTFLTSEEFIRLNTTKSTGSMSF*GSIWLA
Trigger: AGCTAGCCAGATTGATCCTCAGAAAGACATAGAGCC...TGTACTTTTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp AGAAGACATTCACAGAATCACTTAATGGAATTACAGCCTTGTTACAGGTGGATAATGCTCACCAAGGACTaGAAGAATCCCCAGGAGGTC +
Preference number: 4 (lower is better)
Translates to: RRHSQNHLMELQPCYRWIMLTKD*KNPQEV
Trigger: GACCTCCTGGGGATTCTTGCAGTCCTTGGTGAGCAT...TATCCACCTGTAACAAGGCTGTAATTCCATTAAGTGATTCTGTGAATGTCTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp ATCACTCTAAAATTGAAACCATCAAGACAGGGAGAAGGAACAAGAAGGCCCAGATATTATTCGATACGATaGCAAGTGAGCCACCTGGCT +
Preference number: 4 (lower is better)
Translates to: ITLKLKPSRQGEGTRRPRYYSIR*QVSHLA
Trigger: AGCCAGGTGGCTCACTTGGCATCGTATCGAATAATA...TCTGGGCCTTCTTGTTCCTTCTCCCTGTCTTGATGGTTTCAATTTTAGAGTGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp TCATTACTGAATACACACTCTTATCTGTTACACAAGCTCTGCCACCAGGTAGGATTATCGGGCCTTGCTTaGCACTTGTACTTTGGAGAA +
Preference number: 4 (lower is better)
Translates to: SLLNTHSYLLHKLCHQVGLSGLA*HLYFGE
Trigger: TTCTCCAAAGTACAAGTGGCAAGCAAGGCCCGATAA...TCCTACCTGGTGGCAGAGCTTGTGTAACAGATAAGAGTGTGTATTCAGTAATGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp CTATTTGTAAATTGGATATTCCATTACGGTGATAACGTACAGAATTCCCATGCGACCGGGGGAAGCCGGTaGTTGAACATAACCATACTC +
Preference number: 4 (lower is better)
Translates to: LFVNWIFHYGDNVQNSHATGGSR*LNITIL
Trigger: GAGTATGGTTATGTTCAACCACCGGCTTCCCCCGGT...CGCATGGGAATTCTGTACGTTATCACCGTAATGGAATATCCAATTTACAAATAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp TCATTACTGAATACACACTCTTATCTGTTACACAAGCTCTGCCACCAGGTAGGACTGAGATTCTGGCTTTaGCCTCTTTGCCTTTTTGAC +
Preference number: 4 (lower is better)
Translates to: SLLNTHSYLLHKLCHQVGLRFWL*PLCLFD
Trigger: GTCAAAAAGGCAAAGAGGCCAAAGCCAGAATCTCAG...TCCTACCTGGTGGCAGAGCTTGTGTAACAGATAAGAGTGTGTATTCAGTAATGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp GGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAAAAGTACAGATTCCCTGAGATTCTaGCTTTGGCCTCTTTGCCTT +
Preference number: 4 (lower is better)
Translates to: GTFLTSEEFIRLNTTKSTDSLRF*LWPLCL
Trigger: AAGGCAAAGAGGCCAAAGCCAGAATCTCAGGGAATC...TGTACTTTTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp GAGAGAGAGATCCTACAGCTTAAGAGATACAGGGGTAAAGGTCCTCTCCATCTTTGCAGTAGGTATTTCTaGATGAAACCCATACTACAC +
Preference number: 4 (lower is better)
Translates to: EREILQLKRYRGKGPLHLCSRYF*MKPILH
Trigger: GTGTAGTATGGGTTTCATCCAGAAATACCTACTGCA...AAGATGGAGAGGACCTTTACCCCTGTATCTCTTAAGCTGTAGGATCTCTCTCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp ATCACTCTAAAATTGAAACCATCAAGACAGGGAGAAGGAACAAGAAGGCCCAGATCTGGAAACAAAGTGTaGTTGTGGAGAGGTGAAGAC +
Preference number: 4 (lower is better)
Translates to: ITLKLKPSRQGEGTRRPRSGNKV*LWRGED
Trigger: GTCTTCACCTCTCCACAACCACACTTTGTTTCCAGA...TCTGGGCCTTCTTGTTCCTTCTCCCTGTCTTGATGGTTTCAATTTTAGAGTGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp GCAAACAACCAGTGGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACTGTAACTCTGGCTGGTaGGTGTCTTTACTCTTGTAC +
Preference number: 4 (lower is better)
Translates to: ANNQWDFSDVRRVHKTKHCNSGW*VSLLLY
Trigger: GTACAAGAGTAAAGACACCCACCAGCCAGAGTTACA...GTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTTGTTTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp GGTGATAACGTACAGAATTCCCATGCGTTATTACACTTTCCTGAGAGTAAAGCAACCTGTAACTCTGGCTaGTGGGTGTCTTTACTCTTG +
Preference number: 4 (lower is better)
Translates to: GDNVQNSHALLHFPESKATCNSG*WVSLLL
Trigger: CAAGAGTAAAGACACCCACCAGCCAGAGTTACAGGT...TGCTTTACTCTCAGGAAAGTGTAATAACGCATGGGAATTCTGTACGTTATCACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR TCA 90 bp AGAAGACATTCACAGAATCACTTAATGGAATTACAGCCTTGTTACAGGTGGATAGCTTCCTCTTGGCTTTaGTTCCCTGAGATTCTGGCT +
Preference number: 4 (lower is better)
Translates to: RRHSQNHLMELQPCYRWIASSWL*FPEILA
Trigger: AGCCAGAATCTCAGGGAATCAAAGCCAAGAGGAAGC...TATCCACCTGTAACAAGGCTGTAATTCCATTAAGTGATTCTGTGAATGTCTTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR TCA 90 bp CATTACGGTGATAACGTACAGAATTCCCATGCGTTATTACACTTTCCTGAGAGTCTTCGACTTTCTCCTTaGGGAACTTGTATTTCCCTG +
Preference number: 4 (lower is better)
Translates to: HYGDNVQNSHALLHFPESLRLSP*GTCISL
Trigger: CAGGGAAATACAAGTTCCTCAAGGAGAAAGTCGAAG...ACTCTCAGGAAAGTGTAATAACGCATGGGAATTCTGTACGTTATCACCGTAATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR TCA 90 bp CATTACGGTGATAACGTACAGAATTCCCATGCGTTATTACACTTTCCTGAGAGTCTCCTTCTGTGTTTCTaGTTTGCCAGAGTACTGATC +
Preference number: 4 (lower is better)
Translates to: HYGDNVQNSHALLHFPESLLLCF*FARVLI
Trigger: GATCAGTACTCTGGCAAATCAGAAACACAGAAGGAG...ACTCTCAGGAAAGTGTAATAACGCATGGGAATTCTGTACGTTATCACCGTAATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp AATCACTCTAAAATTGAAACCATCAAGACAGGGAGAAGGAACAAGAAGGCCCAGTTTGGCACCCTTTTCTaGAGTTCATCTATTCCAGTG +
Preference number: 4 (lower is better)
Translates to: NHSKIETIKTGRRNKKAQFGTLF*SSSIPV
Trigger: CACTGGAATAGATGAACTGCAGAAAAGGGTGCCAAA...CTGGGCCTTCTTGTTCCTTCTCCCTGTCTTGATGGTTTCAATTTTAGAGTGATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp GGTGATAACGTACAGAATTCCCATGCGTTATTACACTTTCCTGAGAGTAAAGCATATTATTCGATACGATaGCAAGTGAGCCACCTGGCT +
Preference number: 4 (lower is better)
Translates to: GDNVQNSHALLHFPESKAYYSIR*QVSHLA
Trigger: AGCCAGGTGGCTCACTTGGCATCGTATCGAATAATA...TGCTTTACTCTCAGGAAAGTGTAATAACGCATGGGAATTCTGTACGTTATCACC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp GCAAACAACCAGTGGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACTTGAAGGTGTTTGGGTaGCTGGGCTCAAATTTTCTT +
Preference number: 4 (lower is better)
Translates to: ANNQWDFSDVRRVHKTKHLKVFG*LGSNFL
Trigger: AAGAAAATTTGAGCCCAGGCACCCAAACACCTTCAA...GTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTTGTTTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp AGAAGACATTCACAGAATCACTTAATGGAATTACAGCCTTGTTACAGGTGGATAAACATAACCATACTCTaGGGGAAGGTGGGCTCCATC +
Preference number: 4 (lower is better)
Translates to: RRHSQNHLMELQPCYRWINITIL*GKVGSI
Trigger: GATGGAGCCCACCTTCCCCCAGAGTATGGTTATGTT...TATCCACCTGTAACAAGGCTGTAATTCCATTAAGTGATTCTGTGAATGTCTTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp GGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAAAAGTACACTGAGATTCTGGCTTTaGCCTCTTTGCCTTTTTGAC +
Preference number: 4 (lower is better)
Translates to: GTFLTSEEFIRLNTTKSTLRFWL*PLCLFD
Trigger: GTCAAAAAGGCAAAGAGGCCAAAGCCAGAATCTCAG...TGTACTTTTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp ATCACTCTAAAATTGAAACCATCAAGACAGGGAGAAGGAACAAGAAGGCCCAGAGACAAGCTGACAAATTaGAAACCGTGTCCAAGAGTA +
Preference number: 4 (lower is better)
Translates to: ITLKLKPSRQGEGTRRPRDKLTN*KPCPRV
Trigger: TACTCTTGGACACGGTTTCCAATTTGTCAGCTTGTC...TCTGGGCCTTCTTGTTCCTTCTCCCTGTCTTGATGGTTTCAATTTTAGAGTGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp GGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAAAAGTACAAACAAAGTGTGGTTGTaGAGAGGTGAAGACAAGCTG +
Preference number: 4 (lower is better)
Translates to: GTFLTSEEFIRLNTTKSTNKVWL*RGEDKL
Trigger: CAGCTTGTCTTCACCTCTCCACAACCACACTTTGTT...TGTACTTTTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp CATTACGGTGATAACGTACAGAATTCCCATGCGTTATTACACTTTCCTGAGAGTTCTGGAAACAAAGTGTaGTTGTGGAGAGGTGAAGAC +
Preference number: 4 (lower is better)
Translates to: HYGDNVQNSHALLHFPESSGNKV*LWRGED
Trigger: GTCTTCACCTCTCCACAACCACACTTTGTTTCCAGA...ACTCTCAGGAAAGTGTAATAACGCATGGGAATTCTGTACGTTATCACCGTAATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp CATTACGGTGATAACGTACAGAATTCCCATGCGTTATTACACTTTCCTGAGAGTACTGAGGTAACAGACTaGCCAAAACCACACTCCAAA +
Preference number: 4 (lower is better)
Translates to: HYGDNVQNSHALLHFPESTEVTD*PKPHSK
Trigger: TTTGGAGTGTGGTTTTGGCCAGTCTGTTACCTCAGT...ACTCTCAGGAAAGTGTAATAACGCATGGGAATTCTGTACGTTATCACCGTAATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp TCATTACTGAATACACACTCTTATCTGTTACACAAGCTCTGCCACCAGGTAGGAGCAAAGTTCTCAATCTaGTACGTTGTTCTAGGCTCT +
Preference number: 4 (lower is better)
Translates to: SLLNTHSYLLHKLCHQVGAKFSI*YVVLGS
Trigger: AGAGCCTAGAACAACGTACCAGATTGAGAACTTTGC...TCCTACCTGGTGGCAGAGCTTGTGTAACAGATAAGAGTGTGTATTCAGTAATGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp ATCACTCTAAAATTGAAACCATCAAGACAGGGAGAAGGAACAAGAAGGCCCAGAGAAGTCCTTACTCTATaGTCCACTTCTCCATTAGAG +
Preference number: 4 (lower is better)
Translates to: ITLKLKPSRQGEGTRRPREVLTL*STSPLE
Trigger: CTCTAATGGAGAAGTGGACCATAGAGTAAGGACTTC...TCTGGGCCTTCTTGTTCCTTCTCCCTGTCTTGATGGTTTCAATTTTAGAGTGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp GGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAAAAGTACATGTAACTCTGGCTGGTaGGTGTCTTTACTCTTGTAC +
Preference number: 4 (lower is better)
Translates to: GTFLTSEEFIRLNTTKSTCNSGW*VSLLLY
Trigger: GTACAAGAGTAAAGACACCCACCAGCCAGAGTTACA...TGTACTTTTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR TCA 90 bp ATCACTCTAAAATTGAAACCATCAAGACAGGGAGAAGGAACAAGAAGGCCCAGATCCATATGGTACTTCTaGATAAACTTCATGCTGCAC +
Preference number: 4 (lower is better)
Translates to: ITLKLKPSRQGEGTRRPRSIWYF*INFMLH
Trigger: GTGCAGCATGAAGTTTATTCAGAAGTACCATATGGA...TCTGGGCCTTCTTGTTCCTTCTCCCTGTCTTGATGGTTTCAATTTTAGAGTGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR TCA 90 bp CTATTTGTAAATTGGATATTCCATTACGGTGATAACGTACAGAATTCCCATGCGGAGGTGAAGACAAGCTaGCAAATTGGAAACCGTGTC +
Preference number: 4 (lower is better)
Translates to: LFVNWIFHYGDNVQNSHAEVKTS*QIGNRV
Trigger: GACACGGTTTCCAATTTGTCAGCTTGTCTTCACCTC...CGCATGGGAATTCTGTACGTTATCACCGTAATGGAATATCCAATTTACAAATAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR TCA 90 bp AGAAGACATTCACAGAATCACTTAATGGAATTACAGCCTTGTTACAGGTGGATATGGCTAGTCAATTTCTaGGATGAGGACTGGAAGGCT +
Preference number: 4 (lower is better)
Translates to: RRHSQNHLMELQPCYRWIWLVNF*DEDWKA
Trigger: AGCCTTCCAGTCCTCATCTCAGAAATTGACTAGCCA...TATCCACCTGTAACAAGGCTGTAATTCCATTAAGTGATTCTGTGAATGTCTTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp AGAAGACATTCACAGAATCACTTAATGGAATTACAGCCTTGTTACAGGTGGATATGGCTTTGGCCTCTTTaGCTTTTTGACGTTAGCGTC +
Preference number: 4 (lower is better)
Translates to: RRHSQNHLMELQPCYRWIWLWPL*LFDVSV
Trigger: GACGCTAACGTCAAAAAGGCAAAGAGGCCAAAGCCA...TATCCACCTGTAACAAGGCTGTAATTCCATTAAGTGATTCTGTGAATGTCTTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp GGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAAAAGTACATTTGGCACCCTTTTCTaGAGTTCATCTATTCCAGTG +
Preference number: 4 (lower is better)
Translates to: GTFLTSEEFIRLNTTKSTFGTLF*SSSIPV
Trigger: CACTGGAATAGATGAACTGCAGAAAAGGGTGCCAAA...TGTACTTTTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp CTATTTGTAAATTGGATATTCCATTACGGTGATAACGTACAGAATTCCCATGCGCCAGACAAGGATTTCTaGCCAACTACGTCTGGTAAC +
Preference number: 4 (lower is better)
Translates to: LFVNWIFHYGDNVQNSHAPDKDF*PTTSGN
Trigger: GTTACCAGACGTAGTTGGGCAGAAATCCTTGTCTGG...CGCATGGGAATTCTGTACGTTATCACCGTAATGGAATATCCAATTTACAAATAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp AGAAGACATTCACAGAATCACTTAATGGAATTACAGCCTTGTTACAGGTGGATACTACTTATCGGGCCTTaGTTGCCACTTGTACTTTGG +
Preference number: 4 (lower is better)
Translates to: RRHSQNHLMELQPCYRWILLIGP*LPLVLW
Trigger: CCAAAGTACAAGTGGCAAGCAAGGCCCGATAAGTAG...TATCCACCTGTAACAAGGCTGTAATTCCATTAAGTGATTCTGTGAATGTCTTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp GAGAGAGAGATCCTACAGCTTAAGAGATACAGGGGTAAAGGTCCTCTCCATCTTTCCAAGAGTAAAACCTaGATTAGTGGATTTTTCGAA +
Preference number: 4 (lower is better)
Translates to: EREILQLKRYRGKGPLHLSKSKT*ISGFFE
Trigger: TTCGAAAAATCCACTAATGCAGGTTTTACTCTTGGA...AAGATGGAGAGGACCTTTACCCCTGTATCTCTTAAGCTGTAGGATCTCTCTCTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp GGTGATAACGTACAGAATTCCCATGCGTTATTACACTTTCCTGAGAGTAAAGCATTTGGAAGATGCACTTaGCTTCCTCTTGGCTTTGAT +
Preference number: 4 (lower is better)
Translates to: GDNVQNSHALLHFPESKAFGRCT*LPLGFD
Trigger: ATCAAAGCCAAGAGGAAGCCAAGTGCATCTTCCAAA...TGCTTTACTCTCAGGAAAGTGTAATAACGCATGGGAATTCTGTACGTTATCACC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp AGAAGACATTCACAGAATCACTTAATGGAATTACAGCCTTGTTACAGGTGGATACTCCAACCAAAGGTTTaGAAGATGCACTTGGCTTCC +
Preference number: 4 (lower is better)
Translates to: RRHSQNHLMELQPCYRWILQPKV*KMHLAS
Trigger: GGAAGCCAAGTGCATCTTCCAAACCTTTGGTTGGAG...TATCCACCTGTAACAAGGCTGTAATTCCATTAAGTGATTCTGTGAATGTCTTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp AATCACTCTAAAATTGAAACCATCAAGACAGGGAGAAGGAACAAGAAGGCCCAGTGCAGTAGGTATTTCTaGATGAAACCCATACTACAC +
Preference number: 4 (lower is better)
Translates to: NHSKIETIKTGRRNKKAQCSRYF*MKPILH
Trigger: GTGTAGTATGGGTTTCATCCAGAAATACCTACTGCA...CTGGGCCTTCTTGTTCCTTCTCCCTGTCTTGATGGTTTCAATTTTAGAGTGATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp GCAAACAACCAGTGGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACTTACCCATACTGTTATaGTTTGATGACCCAGGTTCT +
Preference number: 4 (lower is better)
Translates to: ANNQWDFSDVRRVHKTKHLPILL*FDDPGS
Trigger: AGAACCTGGGTCATCAAACCATAACAGTATGGGTAA...GTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTTGTTTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp GGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAAAAGTACATCATTTGAAGGTGTTTaGGTGCCTGGGCTCAAATTT +
Preference number: 4 (lower is better)
Translates to: GTFLTSEEFIRLNTTKSTSFEGV*VPGLKF
Trigger: AAATTTGAGCCCAGGCACCCAAACACCTTCAAATGA...TGTACTTTTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp CATTACGGTGATAACGTACAGAATTCCCATGCGTTATTACACTTTCCTGAGAGTTCATTTGAAGGTGTTTaGGTGCCTGGGCTCAAATTT +
Preference number: 4 (lower is better)
Translates to: HYGDNVQNSHALLHFPESSFEGV*VPGLKF
Trigger: AAATTTGAGCCCAGGCACCCAAACACCTTCAAATGA...ACTCTCAGGAAAGTGTAATAACGCATGGGAATTCTGTACGTTATCACCGTAATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp CATTACGGTGATAACGTACAGAATTCCCATGCGTTATTACACTTTCCTGAGAGTCCTGTTGGAGGTATTTaGAGTATTCTTGCAACATGC +
Preference number: 4 (lower is better)
Translates to: HYGDNVQNSHALLHFPESPVGGI*SILATC
Trigger: GCATGTTGCAAGAATACTCCAAATACCTCCAACAGG...ACTCTCAGGAAAGTGTAATAACGCATGGGAATTCTGTACGTTATCACCGTAATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp GGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAAAAGTACAGACAAGCTGACAAATTaGAAACCGTGTCCAAGAGTA +
Preference number: 4 (lower is better)
Translates to: GTFLTSEEFIRLNTTKSTDKLTN*KPCPRV
Trigger: TACTCTTGGACACGGTTTCCAATTTGTCAGCTTGTC...TGTACTTTTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp GGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAAAAGTACAGCAAAGTTCTCAATCTaGTACGTTGTTCTAGGCTCT +
Preference number: 4 (lower is better)
Translates to: GTFLTSEEFIRLNTTKSTAKFSI*YVVLGS
Trigger: AGAGCCTAGAACAACGTACCAGATTGAGAACTTTGC...TGTACTTTTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR TCA 90 bp AGAAGACATTCACAGAATCACTTAATGGAATTACAGCCTTGTTACAGGTGGATACTTCGACTTTCTCCTTaGGGAACTTGTATTTCCCTG +
Preference number: 4 (lower is better)
Translates to: RRHSQNHLMELQPCYRWILRLSP*GTCISL
Trigger: CAGGGAAATACAAGTTCCTCAAGGAGAAAGTCGAAG...TATCCACCTGTAACAAGGCTGTAATTCCATTAAGTGATTCTGTGAATGTCTTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR TCA 90 bp GGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAAAAGTACAATTCCAGACTTGTCGTaGCAAGACTTAATTTCAGCA +
Preference number: 4 (lower is better)
Translates to: GTFLTSEEFIRLNTTKSTIPDLS*QDLISA
Trigger: TGCTGAAATTAAGTCTTGTCACGACAAGTCTGGAAT...TGTACTTTTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp CTATTTGTAAATTGGATATTCCATTACGGTGATAACGTACAGAATTCCCATGCGTTATCGGGCCTTGCTTaGCACTTGTACTTTGGAGAA +
Preference number: 4 (lower is better)
Translates to: LFVNWIFHYGDNVQNSHALSGLA*HLYFGE
Trigger: TTCTCCAAAGTACAAGTGGCAAGCAAGGCCCGATAA...CGCATGGGAATTCTGTACGTTATCACCGTAATGGAATATCCAATTTACAAATAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp AACCAGTGGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAAAAACTGAGAACCGAATaGTTGTGCAAAGTTCTCAAT +
Preference number: 4 (lower is better)
Translates to: NQWDFSDVRRVHKTKHHQKLRTE*LCKVLN
Trigger: ATTGAGAACTTTGCACAAGCATTCGGTTCTCAGTTT...TTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp TCATTACTGAATACACACTCTTATCTGTTACACAAGCTCTGCCACCAGGTAGGAAAACTGAGAACCGAATaGTTGTGCAAAGTTCTCAAT +
Preference number: 4 (lower is better)
Translates to: SLLNTHSYLLHKLCHQVGKLRTE*LCKVLN
Trigger: ATTGAGAACTTTGCACAAGCATTCGGTTCTCAGTTT...TCCTACCTGGTGGCAGAGCTTGTGTAACAGATAAGAGTGTGTATTCAGTAATGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp CTATTTGTAAATTGGATATTCCATTACGGTGATAACGTACAGAATTCCCATGCGAGGTGTTTGGGTGCCTaGGCTCAAATTTTCTTCTTG +
Preference number: 4 (lower is better)
Translates to: LFVNWIFHYGDNVQNSHARCLGA*AQIFFL
Trigger: CAAGAAGAAAATTTGAGCCCAGGCACCCAAACACCT...CGCATGGGAATTCTGTACGTTATCACCGTAATGGAATATCCAATTTACAAATAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp AATCACTCTAAAATTGAAACCATCAAGACAGGGAGAAGGAACAAGAAGGCCCAGTTTTCGAAAGCCTGTTaGAGGTATTTGGAGTATTCT +
Preference number: 4 (lower is better)
Translates to: NHSKIETIKTGRRNKKAQFSKAC*RYLEYS
Trigger: AGAATACTCCAAATACCTCCAACAGGCTTTCGAAAA...CTGGGCCTTCTTGTTCCTTCTCCCTGTCTTGATGGTTTCAATTTTAGAGTGATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp TCATTACTGAATACACACTCTTATCTGTTACACAAGCTCTGCCACCAGGTAGGATTTTCGAAAGCCTGTTaGAGGTATTTGGAGTATTCT +
Preference number: 4 (lower is better)
Translates to: SLLNTHSYLLHKLCHQVGFSKAC*RYLEYS
Trigger: AGAATACTCCAAATACCTCCAACAGGCTTTCGAAAA...TCCTACCTGGTGGCAGAGCTTGTGTAACAGATAAGAGTGTGTATTCAGTAATGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp CTATTTGTAAATTGGATATTCCATTACGGTGATAACGTACAGAATTCCCATGCGAACAAAGTGTGGTTGTaGAGAGGTGAAGACAAGCTG +
Preference number: 4 (lower is better)
Translates to: LFVNWIFHYGDNVQNSHANKVWL*RGEDKL
Trigger: CAGCTTGTCTTCACCTCTCCACAACCACACTTTGTT...CGCATGGGAATTCTGTACGTTATCACCGTAATGGAATATCCAATTTACAAATAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp CTATTTGTAAATTGGATATTCCATTACGGTGATAACGTACAGAATTCCCATGCGACTGAGGTAACAGACTaGCCAAAACCACACTCCAAA +
Preference number: 4 (lower is better)
Translates to: LFVNWIFHYGDNVQNSHATEVTD*PKPHSK
Trigger: TTTGGAGTGTGGTTTTGGCCAGTCTGTTACCTCAGT...CGCATGGGAATTCTGTACGTTATCACCGTAATGGAATATCCAATTTACAAATAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp AATCACTCTAAAATTGAAACCATCAAGACAGGGAGAAGGAACAAGAAGGCCCAGTACTCTTGTACTACATaGCTCACTTACATCAGACAT +
Preference number: 4 (lower is better)
Translates to: NHSKIETIKTGRRNKKAQYSCTT*LTYIRH
Trigger: ATGTCTGATGTAAGTGAGCCATGTAGTACAAGAGTA...CTGGGCCTTCTTGTTCCTTCTCCCTGTCTTGATGGTTTCAATTTTAGAGTGATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp GCAAACAACCAGTGGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACGTGATTCATTTGTTTTaGCAGTCTTGTGTTCCTTAT +
Preference number: 4 (lower is better)
Translates to: ANNQWDFSDVRRVHKTKHVIHLF*QSCVPY
Trigger: ATAAGGAACACAAGACTGGCAAAACAAATGAATCAC...GTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTTGTTTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CCA 90 bp GGTGATAACGTACAGAATTCCCATGCGTTATTACACTTTCCTGAGAGTAAAGCATACTCTTGTACTACATaGCTCACTTACATCAGACAT +
Preference number: 4 (lower is better)
Translates to: GDNVQNSHALLHFPESKAYSCTT*LTYIRH
Trigger: ATGTCTGATGTAAGTGAGCCATGTAGTACAAGAGTA...TGCTTTACTCTCAGGAAAGTGTAATAACGCATGGGAATTCTGTACGTTATCACC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR TCA 90 bp AGAAGACATTCACAGAATCACTTAATGGAATTACAGCCTTGTTACAGGTGGATATCCATATGGTACTTCTaGATAAACTTCATGCTGCAC +
Preference number: 4 (lower is better)
Translates to: RRHSQNHLMELQPCYRWISIWYF*INFMLH
Trigger: GTGCAGCATGAAGTTTATTCAGAAGTACCATATGGA...TATCCACCTGTAACAAGGCTGTAATTCCATTAAGTGATTCTGTGAATGTCTTCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp CATTACGGTGATAACGTACAGAATTCCCATGCGTTATTACACTTTCCTGAGAGTGTGATTCATTTGTTTTaGCAGTCTTGTGTTCCTTAT +
Preference number: 4 (lower is better)
Translates to: HYGDNVQNSHALLHFPESVIHLF*QSCVPY
Trigger: ATAAGGAACACAAGACTGGCAAAACAAATGAATCAC...ACTCTCAGGAAAGTGTAATAACGCATGGGAATTCTGTACGTTATCACCGTAATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR GCA 90 bp GGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAAAAGTACATCCAAGAGTAAAACCTaGATTAGTGGATTTTTCGAA +
Preference number: 4 (lower is better)
Translates to: GTFLTSEEFIRLNTTKSTSKSKT*ISGFFE
Trigger: TTCGAAAAATCCACTAATGCAGGTTTTACTCTTGGA...TGTACTTTTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS TCA 90 bp CTGCAAGAATCCCCAGGAGGTCCTCTGCGAAGGGAAGGCCGCGGCTaGCGCCGCCGGCTCCTTCTTGAAAGTCATGTCCGGGGCTGGCGG +
Preference number: 5 (lower is better)
Translates to: LQESPGGPLRREGRG*RRRLLLESHVRGWR
Trigger: CCGCCAGCCCCGGACATGACTTTCAAGAAGGAGCCGGCGGCGTCAGCCGCGGCCTTCCCTTCGCAGAGGACCTCCTGGGGATTCTTGCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS TCA 90 bp GGTGGTGGGACGGCTGCTCCTCGGGATCCGCAGGTTTCTCCTGCTTaGTGCTCACCAAGGACTGCAAGAATCCCCAGGAGGTCCTCTGCG +
Preference number: 5 (lower is better)
Translates to: GGGTAAPRDPQVSPA*CSPRTARIPRRSSA
Trigger: CGCAGAGGACCTCCTGGGGATTCTTGCAGTCCTTGGTGAGCATCAAGCAGGAGAAACCTGCGGATCCCGAGGAGCAGCCGTCCCACCACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS GCA 90 bp CCTGCTTTGGCTCCTGGTTGCCGTGCTCATCAGTCCTGCTACCGCTaGTCAGTAATACATCGCGGTGGTGCTGGGCCGGTTGCTGCTGGG +
Preference number: 5 (lower is better)
Translates to: PALAPGCRAHQSCYR*SVIHRGGAGPVAAG
Trigger: CCCAGCAGCAACCGGCCCAGCACCACCGCGATGTATTACTGAGCAGCGGTAGCAGGACTGATGAGCACGGCAACCAGGAGCCAAAGCAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS CCA 90 bp CCGCTGCTCAGTAATACATCGCGGTGGTGCTGGGCCGGTTGCTGCTaGGCATGCTGGTGCAGAAGACTGAGGTCTTGGATGACGCCGTGG +
Preference number: 5 (lower is better)
Translates to: PLLSNTSRWCWAGCC*ACWCRRLRSWMTPW
Trigger: CCACGGCGTCATCCAAGACCTCAGTCTTCTGCACCAGCATGCCCAGCAGCAACCGGCCCAGCACCACCGCGATGTATTACTGAGCAGCGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS GCA 90 bp TGCTTGATGCTCACCAAGGACTGCAAGAATCCCCAGGAGGTCCTCTaGGAAGGGAAGGCCGCGGCTGACGCCGCCGGCTCCTTCTTGAAA +
Preference number: 5 (lower is better)
Translates to: CLMLTKDCKNPQEVL*EGKAAADAAGSFLK
Trigger: TTTCAAGAAGGAGCCGGCGGCGTCAGCCGCGGCCTTCCCTTCGCAGAGGACCTCCTGGGGATTCTTGCAGTCCTTGGTGAGCATCAAGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS GCA 90 bp TCCTCGGGATCCGCAGGTTTCTCCTGCTTGATGCTCACCAAGGACTaGAAGAATCCCCAGGAGGTCCTCTGCGAAGGGAAGGCCGCGGCT +
Preference number: 5 (lower is better)
Translates to: SSGSAGFSCLMLTKD*KNPQEVLCEGKAAA
Trigger: AGCCGCGGCCTTCCCTTCGCAGAGGACCTCCTGGGGATTCTTGCAGTCCTTGGTGAGCATCAAGCAGGAGAAACCTGCGGATCCCGAGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS GCA 90 bp TGGTGGTGGTGGGACGGCTGCTCCTCGGGATCCGCAGGTTTCTCCTaGTTGATGCTCACCAAGGACTGCAAGAATCCCCAGGAGGTCCTC +
Preference number: 5 (lower is better)
Translates to: WWWWDGCSSGSAGFS*LMLTKDCKNPQEVL
Trigger: GAGGACCTCCTGGGGATTCTTGCAGTCCTTGGTGAGCATCAAGCAGGAGAAACCTGCGGATCCCGAGGAGCAGCCGTCCCACCACCACCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS GCA 90 bp CTACCGCTGCTCAGTAATACATCGCGGTGGTGCTGGGCCGGTTGCTaGTGGGCATGCTGGTGCAGAAGACTGAGGTCTTGGATGACGCCG +
Preference number: 5 (lower is better)
Translates to: LPLLSNTSRWCWAGC*WACWCRRLRSWMTP
Trigger: CGGCGTCATCCAAGACCTCAGTCTTCTGCACCAGCATGCCCAGCAGCAACCGGCCCAGCACCACCGCGATGTATTACTGAGCAGCGGTAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS CCA 90 bp CCGTGCTCATCAGTCCTGCTACCGCTGCTCAGTAATACATCGCGGTaGTGCTGGGCCGGTTGCTGCTGGGCATGCTGGTGCAGAAGACTG +
Preference number: 5 (lower is better)
Translates to: PCSSVLLPLLSNTSR*CWAGCCWACWCRRL
Trigger: CAGTCTTCTGCACCAGCATGCCCAGCAGCAACCGGCCCAGCACCACCGCGATGTATTACTGAGCAGCGGTAGCAGGACTGATGAGCACGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS GCA 90 bp CTGCTACCGCTGCTCAGTAATACATCGCGGTGGTGCTGGGCCGGTTaGTGCTGGGCATGCTGGTGCAGAAGACTGAGGTCTTGGATGACG +
Preference number: 5 (lower is better)
Translates to: LLPLLSNTSRWCWAG*CWACWCRRLRSWMT
Trigger: CGTCATCCAAGACCTCAGTCTTCTGCACCAGCATGCCCAGCAGCAACCGGCCCAGCACCACCGCGATGTATTACTGAGCAGCGGTAGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS GCA 90 bp TGCTCATCAGTCCTGCTACCGCTGCTCAGTAATACATCGCGGTGGTaGTGGGCCGGTTGCTGCTGGGCATGCTGGTGCAGAAGACTGAGG +
Preference number: 5 (lower is better)
Translates to: CSSVLLPLLSNTSRW*WAGCCWACWCRRLR
Trigger: CCTCAGTCTTCTGCACCAGCATGCCCAGCAGCAACCGGCCCAGCACCACCGCGATGTATTACTGAGCAGCGGTAGCAGGACTGATGAGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS CCA 90 bp TCATCAGTCCTGCTACCGCTGCTCAGTAATACATCGCGGTGGTGCTaGGCCGGTTGCTGCTGGGCATGCTGGTGCAGAAGACTGAGGTCT +
Preference number: 5 (lower is better)
Translates to: SSVLLPLLSNTSRWC*AGCCWACWCRRLRS
Trigger: AGACCTCAGTCTTCTGCACCAGCATGCCCAGCAGCAACCGGCCCAGCACCACCGCGATGTATTACTGAGCAGCGGTAGCAGGACTGATGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS CCA 90 bp TTCTGGCTTTGGCCTCTTTGCCTTTTTGACGTTAGCGTCCTGCTTTaGCTCCTGGTTGCCGTGCTCATCAGTCCTGCTACCGCTGCTCAG +
Preference number: 5 (lower is better)
Translates to: FWLWPLCLFDVSVLL*LLVAVLISPATAAQ
Trigger: CTGAGCAGCGGTAGCAGGACTGATGAGCACGGCAACCAGGAGCCAAAGCAGGACGCTAACGTCAAAAAGGCAAAGAGGCCAAAGCCAGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS GCA 90 bp TTTGCCTTTTTGACGTTAGCGTCCTGCTTTGGCTCCTGGTTGCCGTaGTCATCAGTCCTGCTACCGCTGCTCAGTAATACATCGCGGTGG +
Preference number: 5 (lower is better)
Translates to: FAFLTLASCFGSWLP*SSVLLPLLSNTSRW
Trigger: CCACCGCGATGTATTACTGAGCAGCGGTAGCAGGACTGATGAGCACGGCAACCAGGAGCCAAAGCAGGACGCTAACGTCAAAAAGGCAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp ATCACTCTAAAATTGAAACCATCAAGACAGGGAGAAGGAACAAGAAGGCCCAGAGTGGTGCTGGGCCGGTaGCTGCTGGGCATGCTGGTG +
Preference number: 5 (lower is better)
Translates to: ITLKLKPSRQGEGTRRPRVVLGR*LLGMLV
Trigger: CACCAGCATGCCCAGCAGCAACCGGCCCAGCACCAC...TCTGGGCCTTCTTGTTCCTTCTCCCTGTCTTGATGGTTTCAATTTTAGAGTGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS GCA 90 bp GGACAGGACGGCACCTTCTCCCTCTCCAACCAAAGGTTTGGAAGATaGACTTGGCTTCCTCTTGGCTTTGATTCCCTGAGATTCTGGCTT +
Preference number: 5 (lower is better)
Translates to: GQDGTFSLSNQRFGR*TWLPLGFDSLRFWL
Trigger: AAGCCAGAATCTCAGGGAATCAAAGCCAAGAGGAAGCCAAGTGCATCTTCCAAACCTTTGGTTGGAGAGGGAGAAGGTGCCGTCCTGTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS CCA 90 bp TTTGGCCTCTTTGCCTTTTTGACGTTAGCGTCCTGCTTTGGCTCCTaGTTGCCGTGCTCATCAGTCCTGCTACCGCTGCTCAGTAATACA +
Preference number: 5 (lower is better)
Translates to: FGLFAFLTLASCFGS*LPCSSVLLPLLSNT
Trigger: TGTATTACTGAGCAGCGGTAGCAGGACTGATGAGCACGGCAACCAGGAGCCAAAGCAGGACGCTAACGTCAAAAAGGCAAAGAGGCCAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS CCA 90 bp TGCACTTGGCTTCCTCTTGGCTTTGATTCCCTGAGATTCTGGCTTTaGCCTCTTTGCCTTTTTGACGTTAGCGTCCTGCTTTGGCTCCTG +
Preference number: 5 (lower is better)
Translates to: CTWLPLGFDSLRFWL*PLCLFDVSVLLWLL
Trigger: CAGGAGCCAAAGCAGGACGCTAACGTCAAAAAGGCAAAGAGGCCAAAGCCAGAATCTCAGGGAATCAAAGCCAAGAGGAAGCCAAGTGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS CCA 90 bp CCTGAAAGCAGCACTACAGTGATCACAGATATGAGGTTTCTGACTTaGGGACAGGACGGCACCTTCTCCCTCTCCAACCAAAGGTTTGGA +
Preference number: 5 (lower is better)
Translates to: PESSTTVITDMRFLT*GQDGTFSLSNQRFG
Trigger: TCCAAACCTTTGGTTGGAGAGGGAGAAGGTGCCGTCCTGTCCCCAAGTCAGAAACCTCATATCTGTGATCACTGTAGTGCTGCTTTCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS TCA 90 bp CTCTGCTGTGAATTTTCTCGTGTCTCTGCAGTAGGTATTTCTGGATaGAACCCATACTACACTGGCTGCACTGGAAAGGCCTTTCGCCCG +
Preference number: 5 (lower is better)
Translates to: LCCEFSRVSAVGISG*NPYYTGCTGKAFRP
Trigger: CGGGCGAAAGGCCTTTCCAGTGCAGCCAGTGTAGTATGGGTTTCATCCAGAAATACCTACTGCAGAGACACGAGAAAATTCACAGCAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS GCA 90 bp GCACTAGCGGCTCCTTTTGCTATGGCTTCACCACACGTGCGCCTGTaGTTCAACAATCTGTCAGTCCTTGAAAAATACTGTTGGCAAGTG +
Preference number: 5 (lower is better)
Translates to: ALAAPFAMASPHVRL*FNNLSVLEKYCWQV
Trigger: CACTTGCCAACAGTATTTTTCAAGGACTGACAGATTGTTGAAGCACAGGCGCACGTGTGGTGAAGCCATAGCAAAAGGAGCCGCTAGTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS CCA 90 bp GGAAGATGCACTTGGCTTCCTCTTGGCTTTGATTCCCTGAGATTCTaGCTTTGGCCTCTTTGCCTTTTTGACGTTAGCGTCCTGCTTTGG +
Preference number: 5 (lower is better)
Translates to: GRCTWLPLGFDSLRF*LWPLCLFDVSVLLW
Trigger: CCAAAGCAGGACGCTAACGTCAAAAAGGCAAAGAGGCCAAAGCCAGAATCTCAGGGAATCAAAGCCAAGAGGAAGCCAAGTGCATCTTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp GAGAGAGAGATCCTACAGCTTAAGAGATACAGGGGTAAAGGTCCTCTCCATCTTGGGGGAAGCCGGTGGTaGAACATAACCATACTCTGG +
Preference number: 5 (lower is better)
Translates to: EREILQLKRYRGKGPLHLGGSRW*NITILW
Trigger: CCAGAGTATGGTTATGTTCAACCACCGGCTTCCCCC...AAGATGGAGAGGACCTTTACCCCTGTATCTCTTAAGCTGTAGGATCTCTCTCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp GGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAAAAGTACAGCCGCCGGCTCCTTCTaGAAAGTCATGTCCGGGGCT +
Preference number: 5 (lower is better)
Translates to: GTFLTSEEFIRLNTTKSTAAGSF*KVMSGA
Trigger: AGCCCCGGACATGACTTTCAAGAAGGAGCCGGCGGC...TGTACTTTTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp ATCACTCTAAAATTGAAACCATCAAGACAGGGAGAAGGAACAAGAAGGCCCAGACAGAAGACTGAGGTCTaGGATGACGCCGTGGCTCCC +
Preference number: 5 (lower is better)
Translates to: ITLKLKPSRQGEGTRRPRQKTEV*DDAVAP
Trigger: GGGAGCCACGGCGTCATCCAAGACCTCAGTCTTCTG...TCTGGGCCTTCTTGTTCCTTCTCCCTGTCTTGATGGTTTCAATTTTAGAGTGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp AGAAGACATTCACAGAATCACTTAATGGAATTACAGCCTTGTTACAGGTGGATAGTGGTGCTGGGCCGGTaGCTGCTGGGCATGCTGGTG +
Preference number: 5 (lower is better)
Translates to: RRHSQNHLMELQPCYRWIVVLGR*LLGMLV
Trigger: CACCAGCATGCCCAGCAGCAACCGGCCCAGCACCAC...TATCCACCTGTAACAAGGCTGTAATTCCATTAAGTGATTCTGTGAATGTCTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS TCA 90 bp AGTGACAATGGCGCCTCATTGTCCAAAACACTGACCCCTGCAGACTaGATGACTGACTGCTGGGAGACCATGTGTCCTACATTGATAGAA +
Preference number: 5 (lower is better)
Translates to: SDNGASLSKTLTPAD*MTDCWETMCPTLIE
Trigger: TTCTATCAATGTAGGACACATGGTCTCCCAGCAGTCAGTCATTCAGTCTGCAGGGGTCAGTGTTTTGGACAATGAGGCGCCATTGTCACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp CATTACGGTGATAACGTACAGAATTCCCATGCGTTATTACACTTTCCTGAGAGTCAGAAGACTGAGGTCTaGGATGACGCCGTGGCTCCC +
Preference number: 5 (lower is better)
Translates to: HYGDNVQNSHALLHFPESQKTEV*DDAVAP
Trigger: GGGAGCCACGGCGTCATCCAAGACCTCAGTCTTCTG...ACTCTCAGGAAAGTGTAATAACGCATGGGAATTCTGTACGTTATCACCGTAATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp AACCAGTGGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAATGCTTTGGCTCCTGGTaGCCGTGCTCATCAGTCCTG +
Preference number: 5 (lower is better)
Translates to: NQWDFSDVRRVHKTKHHQCFGSW*PCSSVL
Trigger: CAGGACTGATGAGCACGGCAACCAGGAGCCAAAGCA...TTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS TCA 90 bp GAGAAGACTAATGGTCTCCACACTATTATTCGATACGATGCCAAGTaGGCCACCTGGCTTACCAGACAAGGATTTCTGCCCAACTACGTC +
Preference number: 5 (lower is better)
Translates to: EKTNGLHTIIRYDAK*ATWLTRQGFLPNYV
Trigger: GACGTAGTTGGGCAGAAATCCTTGTCTGGTAAGCCAGGTGGCTCACTTGGCATCGTATCGAATAATAGTGTGGAGACCATTAGTCTTCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp CTATTTGTAAATTGGATATTCCATTACGGTGATAACGTACAGAATTCCCATGCGGCCGCCGGCTCCTTCTaGAAAGTCATGTCCGGGGCT +
Preference number: 5 (lower is better)
Translates to: LFVNWIFHYGDNVQNSHAAAGSF*KVMSGA
Trigger: AGCCCCGGACATGACTTTCAAGAAGGAGCCGGCGGC...CGCATGGGAATTCTGTACGTTATCACCGTAATGGAATATCCAATTTACAAATAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp CATTACGGTGATAACGTACAGAATTCCCATGCGTTATTACACTTTCCTGAGAGTTGCTTTGGCTCCTGGTaGCCGTGCTCATCAGTCCTG +
Preference number: 5 (lower is better)
Translates to: HYGDNVQNSHALLHFPESCFGSW*PCSSVL
Trigger: CAGGACTGATGAGCACGGCAACCAGGAGCCAAAGCA...ACTCTCAGGAAAGTGTAATAACGCATGGGAATTCTGTACGTTATCACCGTAATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS GCA 90 bp CATTGGCACCCTGCTGCCCGACTTAAACTGAGAACCGAATGCTTGTaGAAAGTTCTCAATCTGGTACGTTGTTCTAGGCTCTATGTCTTT +
Preference number: 5 (lower is better)
Translates to: HWHPAARLKLRTECL*KVLNLVRCSRLYVF
Trigger: AAAGACATAGAGCCTAGAACAACGTACCAGATTGAGAACTTTGCACAAGCATTCGGTTCTCAGTTTAAGTCGGGCAGCAGGGTGCCAATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS GCA 90 bp AAAGGTCATTGGCACCCTGCTGCCCGACTTAAACTGAGAACCGAATaGTTGTGCAAAGTTCTCAATCTGGTACGTTGTTCTAGGCTCTAT +
Preference number: 5 (lower is better)
Translates to: KGHWHPAARLKLRTE*LCKVLNLVRCSRLY
Trigger: ATAGAGCCTAGAACAACGTACCAGATTGAGAACTTTGCACAAGCATTCGGTTCTCAGTTTAAGTCGGGCAGCAGGGTGCCAATGACCTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS CCA 90 bp TACTCTATGGTCCACTTCTCCATTAGAGTTAGTGATAAAGGTCATTaGCACCCTGCTGCCCGACTTAAACTGAGAACCGAATGCTTGTGC +
Preference number: 5 (lower is better)
Translates to: YSMVHFSIRVSDKGH*HPAARLKLRTECLC
Trigger: GCACAAGCATTCGGTTCTCAGTTTAAGTCGGGCAGCAGGGTGCCAATGACCTTTATCACTAACTCTAATGGAGAAGTGGACCATAGAGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp GGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAAAAGTACAGCAGGTTTCTCCTGCTaGATGCTCACCAAGGACTGC +
Preference number: 5 (lower is better)
Translates to: GTFLTSEEFIRLNTTKSTAGFSC*MLTKDC
Trigger: GCAGTCCTTGGTGAGCATCAAGCAGGAGAAACCTGC...TGTACTTTTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp GCAAACAACCAGTGGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACTATGAGGTTTCTGACTaGGGGACAGGACGGCACCTT +
Preference number: 5 (lower is better)
Translates to: ANNQWDFSDVRRVHKTKHYEVSD*GTGRHL
Trigger: AAGGTGCCGTCCTGTCCCCAAGTCAGAAACCTCATA...GTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTTGTTTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp AATCACTCTAAAATTGAAACCATCAAGACAGGGAGAAGGAACAAGAAGGCCCAGTATGAGGTTTCTGACTaGGGGACAGGACGGCACCTT +
Preference number: 5 (lower is better)
Translates to: NHSKIETIKTGRRNKKAQYEVSD*GTGRHL
Trigger: AAGGTGCCGTCCTGTCCCCAAGTCAGAAACCTCATA...CTGGGCCTTCTTGTTCCTTCTCCCTGTCTTGATGGTTTCAATTTTAGAGTGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp AACCAGTGGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAAGACAATGGCGCCTCATaGTCCAAAACACTGACCCCT +
Preference number: 5 (lower is better)
Translates to: NQWDFSDVRRVHKTKHHQDNGAS*SKTLTP
Trigger: AGGGGTCAGTGTTTTGGACAATGAGGCGCCATTGTC...TTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS TCA 90 bp GAGTTAGTGATAAAGGTCATTGGCACCCTGCTGCCCGACTTAAACTaGGAACCGAATGCTTGTGCAAAGTTCTCAATCTGGTACGTTGTT +
Preference number: 5 (lower is better)
Translates to: ELVIKVIGTLLPDLN*EPNACAKFSIWYVV
Trigger: AACAACGTACCAGATTGAGAACTTTGCACAAGCATTCGGTTCTCAGTTTAAGTCGGGCAGCAGGGTGCCAATGACCTTTATCACTAACTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp AACCAGTGGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAACTTATCGGGCCTTGCTaGCCACTTGTACTTTGGAGA +
Preference number: 5 (lower is better)
Translates to: NQWDFSDVRRVHKTKHHQLIGPC*PLVLWR
Trigger: TCTCCAAAGTACAAGTGGCAAGCAAGGCCCGATAAG...TTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp CATTACGGTGATAACGTACAGAATTCCCATGCGTTATTACACTTTCCTGAGAGTGACAATGGCGCCTCATaGTCCAAAACACTGACCCCT +
Preference number: 5 (lower is better)
Translates to: HYGDNVQNSHALLHFPESDNGAS*SKTLTP
Trigger: AGGGGTCAGTGTTTTGGACAATGAGGCGCCATTGTC...ACTCTCAGGAAAGTGTAATAACGCATGGGAATTCTGTACGTTATCACCGTAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp GAGAGAGAGATCCTACAGCTTAAGAGATACAGGGGTAAAGGTCCTCTCCATCTTCTGAGAACCGAATGCTaGTGCAAAGTTCTCAATCTG +
Preference number: 5 (lower is better)
Translates to: EREILQLKRYRGKGPLHLLRTEC*CKVLNL
Trigger: CAGATTGAGAACTTTGCACAAGCATTCGGTTCTCAG...AAGATGGAGAGGACCTTTACCCCTGTATCTCTTAAGCTGTAGGATCTCTCTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp AGAAGACATTCACAGAATCACTTAATGGAATTACAGCCTTGTTACAGGTGGATAGGGGGAAGCCGGTGGTaGAACATAACCATACTCTGG +
Preference number: 5 (lower is better)
Translates to: RRHSQNHLMELQPCYRWIGGSRW*NITILW
Trigger: CCAGAGTATGGTTATGTTCAACCACCGGCTTCCCCC...TATCCACCTGTAACAAGGCTGTAATTCCATTAAGTGATTCTGTGAATGTCTTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp AATCACTCTAAAATTGAAACCATCAAGACAGGGAGAAGGAACAAGAAGGCCCAGTCTCCAACCAAAGGTTaGGAAGATGCACTTGGCTTC +
Preference number: 5 (lower is better)
Translates to: NHSKIETIKTGRRNKKAQSPTKG*EDALGF
Trigger: GAAGCCAAGTGCATCTTCCAAACCTTTGGTTGGAGA...CTGGGCCTTCTTGTTCCTTCTCCCTGTCTTGATGGTTTCAATTTTAGAGTGATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp ATCACTCTAAAATTGAAACCATCAAGACAGGGAGAAGGAACAAGAAGGCCCAGATCTCCAACCAAAGGTTaGGAAGATGCACTTGGCTTC +
Preference number: 5 (lower is better)
Translates to: ITLKLKPSRQGEGTRRPRSPTKG*EDALGF
Trigger: GAAGCCAAGTGCATCTTCCAAACCTTTGGTTGGAGA...TCTGGGCCTTCTTGTTCCTTCTCCCTGTCTTGATGGTTTCAATTTTAGAGTGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS TCA 90 bp ATGCTTTTCGACTTCGACTTTCTCCTTGAGGAACTTGTATTTCCCTaGGACAACACAGCCAGGTTACCCATACTGTTATGGTTTGATGAC +
Preference number: 5 (lower is better)
Translates to: MLFDFDFLLEELVFP*DNTARLPILLWFDD
Trigger: GTCATCAAACCATAACAGTATGGGTAACCTGGCTGTGTTGTCTCAGGGAAATACAAGTTCCTCAAGGAGAAAGTCGAAGTCGAAAAGCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS CCA 90 bp GGAAACAAAGTGTGGTTGTGGAGAGGTGAAGACAAGCTGACAAATTaGAAACCGTGTCCAAGAGTAAAACCTGCATTAGTGGATTTTTCG +
Preference number: 5 (lower is better)
Translates to: GNKVWLWRGEDKLTN*KPCPRVKPALVDFS
Trigger: CGAAAAATCCACTAATGCAGGTTTTACTCTTGGACACGGTTTCCAATTTGTCAGCTTGTCTTCACCTCTCCACAACCACACTTTGTTTCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp GGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAAAAGTACACCACTATGTGTCCTCTaGTGTCTCTCCATATGGTAC +
Preference number: 5 (lower is better)
Translates to: GTFLTSEEFIRLNTTKSTPLCVL*CLSIWY
Trigger: GTACCATATGGAGAGACACAAGAGGACACATAGTGG...TGTACTTTTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp GGTGATAACGTACAGAATTCCCATGCGTTATTACACTTTCCTGAGAGTAAAGCACCATACTGTTATGGTTaGATGACCCAGGTTCTGCAC +
Preference number: 5 (lower is better)
Translates to: GDNVQNSHALLHFPESKAPYCYG*MTQVLH
Trigger: GTGCAGAACCTGGGTCATCAAACCATAACAGTATGG...TGCTTTACTCTCAGGAAAGTGTAATAACGCATGGGAATTCTGTACGTTATCACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp GGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAAAAGTACACCATACTGTTATGGTTaGATGACCCAGGTTCTGCAC +
Preference number: 5 (lower is better)
Translates to: GTFLTSEEFIRLNTTKSTPYCYG*MTQVLH
Trigger: GTGCAGAACCTGGGTCATCAAACCATAACAGTATGG...TGTACTTTTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp GCAAACAACCAGTGGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCTTGCCACTTGTACTTaGGAGAAGACTAATGGTCTC +
Preference number: 5 (lower is better)
Translates to: ANNQWDFSDVRRVHKTKHLATCT*EKTNGL
Trigger: GAGACCATTAGTCTTCTCCAAAGTACAAGTGGCAAG...GTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTTGTTTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp GGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAAAAGTACAACTACTTATCGGGCCTaGCTTGCCACTTGTACTTTG +
Preference number: 5 (lower is better)
Translates to: GTFLTSEEFIRLNTTKSTTTYRA*LATCTL
Trigger: CAAAGTACAAGTGGCAAGCAAGGCCCGATAAGTAGT...TGTACTTTTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp AACCAGTGGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAAGCCTGTTGGAGGTATTaGGAGTATTCTTGCAACATG +
Preference number: 5 (lower is better)
Translates to: NQWDFSDVRRVHKTKHHQACWRY*EYSCNM
Trigger: CATGTTGCAAGAATACTCCAAATACCTCCAACAGGC...TTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp ATCACTCTAAAATTGAAACCATCAAGACAGGGAGAAGGAACAAGAAGGCCCAGAGCCTGTTGGAGGTATTaGGAGTATTCTTGCAACATG +
Preference number: 5 (lower is better)
Translates to: ITLKLKPSRQGEGTRRPRACWRY*EYSCNM
Trigger: CATGTTGCAAGAATACTCCAAATACCTCCAACAGGC...TCTGGGCCTTCTTGTTCCTTCTCCCTGTCTTGATGGTTTCAATTTTAGAGTGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp GGTGATAACGTACAGAATTCCCATGCGTTATTACACTTTCCTGAGAGTAAAGCAGGAAACAAAGTGTGGTaGTGGAGAGGTGAAGACAAG +
Preference number: 5 (lower is better)
Translates to: GDNVQNSHALLHFPESKAGNKVW*WRGEDK
Trigger: CTTGTCTTCACCTCTCCACAACCACACTTTGTTTCC...TGCTTTACTCTCAGGAAAGTGTAATAACGCATGGGAATTCTGTACGTTATCACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp CATTACGGTGATAACGTACAGAATTCCCATGCGTTATTACACTTTCCTGAGAGTGGAAACAAAGTGTGGTaGTGGAGAGGTGAAGACAAG +
Preference number: 5 (lower is better)
Translates to: HYGDNVQNSHALLHFPESGNKVW*WRGEDK
Trigger: CTTGTCTTCACCTCTCCACAACCACACTTTGTTTCC...ACTCTCAGGAAAGTGTAATAACGCATGGGAATTCTGTACGTTATCACCGTAATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp TCATTACTGAATACACACTCTTATCTGTTACACAAGCTCTGCCACCAGGTAGGACTGAGAACCGAATGCTaGTGCAAAGTTCTCAATCTG +
Preference number: 5 (lower is better)
Translates to: SLLNTHSYLLHKLCHQVGLRTEC*CKVLNL
Trigger: CAGATTGAGAACTTTGCACAAGCATTCGGTTCTCAG...TCCTACCTGGTGGCAGAGCTTGTGTAACAGATAAGAGTGTGTATTCAGTAATGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS TCA 90 bp AGTGTTCTCCTGAGGTGTGTAAATCCACTCGTGGTTCTGTTAAATTaGAAGGATCCTCCTTCTGTGTTTCTGATTTGCCAGAGTACTGAT +
Preference number: 5 (lower is better)
Translates to: SVLLRCVNPLVVLLN*KDPPSVFLICQSTD
Trigger: ATCAGTACTCTGGCAAATCAGAAACACAGAAGGAGGATCCTTTCAATTTAACAGAACCACGAGTGGATTTACACACCTCAGGAGAACACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS TCA 90 bp TTATCATTTGAAGGTGTTTGGGTGCCTGGGCTCAAATTTTCTTCTTaGACCAATTCAGAGTGTTCTCCTGAGGTGTGTAAATCCACTCGT +
Preference number: 5 (lower is better)
Translates to: LSFEGVWVPGLKFSS*TNSECSPEVCKSTR
Trigger: ACGAGTGGATTTACACACCTCAGGAGAACACTCTGAATTGGTTCAAGAAGAAAATTTGAGCCCAGGCACCCAAACACCTTCAAATGATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp GCAAACAACCAGTGGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACTTCTCCTTGAGGAACTaGTATTTCCCTGAGACAACA +
Preference number: 5 (lower is better)
Translates to: ANNQWDFSDVRRVHKTKHFSLRN*YFPETT
Trigger: TGTTGTCTCAGGGAAATACAAGTTCCTCAAGGAGAA...GTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTTGTTTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp TCATTACTGAATACACACTCTTATCTGTTACACAAGCTCTGCCACCAGGTAGGAACCATGTGTCCTACATaGATAGAAAAGGCACTGTTG +
Preference number: 5 (lower is better)
Translates to: SLLNTHSYLLHKLCHQVGTMCPT*IEKALL
Trigger: CAACAGTGCCTTTTCTATCAATGTAGGACACATGGT...TCCTACCTGGTGGCAGAGCTTGTGTAACAGATAAGAGTGTGTATTCAGTAATGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp TCATTACTGAATACACACTCTTATCTGTTACACAAGCTCTGCCACCAGGTAGGATGGGTGTCTTTACTCTaGTACTACATGGCTCACTTA +
Preference number: 5 (lower is better)
Translates to: SLLNTHSYLLHKLCHQVGWVSLL*YYMAHL
Trigger: TAAGTGAGCCATGTAGTACAAGAGTAAAGACACCCA...TCCTACCTGGTGGCAGAGCTTGTGTAACAGATAAGAGTGTGTATTCAGTAATGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp GCAAACAACCAGTGGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACTGGGTGTCTTTACTCTaGTACTACATGGCTCACTTA +
Preference number: 5 (lower is better)
Translates to: ANNQWDFSDVRRVHKTKHWVSLL*YYMAHL
Trigger: TAAGTGAGCCATGTAGTACAAGAGTAAAGACACCCA...GTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTTGTTTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS TCA 90 bp TTCCTTATTTTCAATAGCTATGCTTTTCGACTTCGACTTTCTCCTTaGGGAACTTGTATTTCCCTGAGACAACACAGCCAGGTTACCCAT +
Preference number: 5 (lower is better)
Translates to: FLIFNSYAFRLRLSP*GTCISLRQHSQVTH
Trigger: ATGGGTAACCTGGCTGTGTTGTCTCAGGGAAATACAAGTTCCTCAAGGAGAAAGTCGAAGTCGAAAAGCATAGCTATTGAAAATAAGGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS GCA 90 bp TTCTTTCTGCTTCCTTTCTTAAAGATCAATTTTGGCACCCTTTTCTaGAGTTCATCTATTCCAGTGCCAATTATGCTCCCACTGGTAGAC +
Preference number: 5 (lower is better)
Translates to: FFLLPFLKINFGTLF*SSSIPVPIMLPLVD
Trigger: GTCTACCAGTGGGAGCATAATTGGCACTGGAATAGATGAACTGCAGAAAAGGGTGCCAAAATTGATCTTTAAGAAAGGAAGCAGAAAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS CCA 90 bp TCCAAAGGAGATGTAGTGTATATCTGTTTTTCTGGAAACAAAGTGTaGTTGTGGAGAGGTGAAGACAAGCTGACAAATTGGAAACCGTGT +
Preference number: 5 (lower is better)
Translates to: SKGDVVYICFSGNKV*LWRGEDKLTNWKPC
Trigger: ACACGGTTTCCAATTTGTCAGCTTGTCTTCACCTCTCCACAACCACACTTTGTTTCCAGAAAAACAGATATACACTACATCTCCTTTGGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp AGAAGACATTCACAGAATCACTTAATGGAATTACAGCCTTGTTACAGGTGGATACCACTATGTGTCCTCTaGTGTCTCTCCATATGGTAC +
Preference number: 5 (lower is better)
Translates to: RRHSQNHLMELQPCYRWIPLCVL*CLSIWY
Trigger: GTACCATATGGAGAGACACAAGAGGACACATAGTGG...TATCCACCTGTAACAAGGCTGTAATTCCATTAAGTGATTCTGTGAATGTCTTCT
41% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp TCATTACTGAATACACACTCTTATCTGTTACACAAGCTCTGCCACCAGGTAGGAACAATCTGTCAGTCCTaGAAAAATACTGTTGGCAAG +
Preference number: 5 (lower is better)
Translates to: SLLNTHSYLLHKLCHQVGTICQS*KNTVGK
Trigger: CTTGCCAACAGTATTTTTCAAGGACTGACAGATTGT...TCCTACCTGGTGGCAGAGCTTGTGTAACAGATAAGAGTGTGTATTCAGTAATGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp AACCAGTGGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAAACAATCTGTCAGTCCTaGAAAAATACTGTTGGCAAG +
Preference number: 5 (lower is better)
Translates to: NQWDFSDVRRVHKTKHHQTICQS*KNTVGK
Trigger: CTTGCCAACAGTATTTTTCAAGGACTGACAGATTGT...TTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp GGTGATAACGTACAGAATTCCCATGCGTTATTACACTTTCCTGAGAGTAAAGCAACTTCGACTTTCTCCTaGAGGAACTTGTATTTCCCT +
Preference number: 5 (lower is better)
Translates to: GDNVQNSHALLHFPESKATSTFS*RNLYFP
Trigger: AGGGAAATACAAGTTCCTCAAGGAGAAAGTCGAAGT...TGCTTTACTCTCAGGAAAGTGTAATAACGCATGGGAATTCTGTACGTTATCACC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp CTATTTGTAAATTGGATATTCCATTACGGTGATAACGTACAGAATTCCCATGCGACTACTTATCGGGCCTaGCTTGCCACTTGTACTTTG +
Preference number: 5 (lower is better)
Translates to: LFVNWIFHYGDNVQNSHATTYRA*LATCTL
Trigger: CAAAGTACAAGTGGCAAGCAAGGCCCGATAAGTAGT...CGCATGGGAATTCTGTACGTTATCACCGTAATGGAATATCCAATTTACAAATAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp ATCACTCTAAAATTGAAACCATCAAGACAGGGAGAAGGAACAAGAAGGCCCAGATTTTTCGAAAGCCTGTaGGAGGTATTTGGAGTATTC +
Preference number: 5 (lower is better)
Translates to: ITLKLKPSRQGEGTRRPRFFESL*EVFGVF
Trigger: GAATACTCCAAATACCTCCAACAGGCTTTCGAAAAA...TCTGGGCCTTCTTGTTCCTTCTCCCTGTCTTGATGGTTTCAATTTTAGAGTGAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp AACCAGTGGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAATTTTTCGAAAGCCTGTaGGAGGTATTTGGAGTATTC +
Preference number: 5 (lower is better)
Translates to: NQWDFSDVRRVHKTKHHQFFESL*EVFGVF
Trigger: GAATACTCCAAATACCTCCAACAGGCTTTCGAAAAA...TTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCCACTGGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS CCA 90 bp ATATTTGTATACCCTGAGAAATCTGACACTGAAGTCCTTACTCTATaGTCCACTTCTCCATTAGAGTTAGTGATAAAGGTCATTGGCACC +
Preference number: 5 (lower is better)
Translates to: IFVYPEKSDTEVLTL*STSPLELVIKVIGT
Trigger: GGTGCCAATGACCTTTATCACTAACTCTAATGGAGAAGTGGACCATAGAGTAAGGACTTCAGTGTCAGATTTCTCAGGGTATACAAATAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp AGAAGACATTCACAGAATCACTTAATGGAATTACAGCCTTGTTACAGGTGGATAACTTCGACTTTCTCCTaGAGGAACTTGTATTTCCCT +
Preference number: 5 (lower is better)
Translates to: RRHSQNHLMELQPCYRWITSTFS*RNLYFP
Trigger: AGGGAAATACAAGTTCCTCAAGGAGAAAGTCGAAGT...TATCCACCTGTAACAAGGCTGTAATTCCATTAAGTGATTCTGTGAATGTCTTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp AGAAGACATTCACAGAATCACTTAATGGAATTACAGCCTTGTTACAGGTGGATAACCATGTGTCCTACATaGATAGAAAAGGCACTGTTG +
Preference number: 5 (lower is better)
Translates to: RRHSQNHLMELQPCYRWITMCPT*IEKALL
Trigger: CAACAGTGCCTTTTCTATCAATGTAGGACACATGGT...TATCCACCTGTAACAAGGCTGTAATTCCATTAAGTGATTCTGTGAATGTCTTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp GGGACTTTTCTGACGTCAGAAGAGTTCATAAGACTAAACACCACCAAAAGTACAGAATCTGAAAGCTCGTaGAGGACTCTAAATTTTTCT +
Preference number: 5 (lower is better)
Translates to: GTFLTSEEFIRLNTTKSTESESS*RTLNFS
Trigger: AGAAAAATTTAGAGTCCTCAACGAGCTTTCAGATTC...TGTACTTTTGGTGGTGTTTAGTCTTATGAACTCTTCTGACGTCAGAAAAGTCCC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS-3UTR CAA 90 bp AGAAGACATTCACAGAATCACTTAATGGAATTACAGCCTTGTTACAGGTGGATAGAATCTGAAAGCTCGTaGAGGACTCTAAATTTTTCT +
Preference number: 5 (lower is better)
Translates to: RRHSQNHLMELQPCYRWIESESS*RTLNFS
Trigger: AGAAAAATTTAGAGTCCTCAACGAGCTTTCAGATTC...TATCCACCTGTAACAAGGCTGTAATTCCATTAAGTGATTCTGTGAATGTCTTCT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS GCA 72 bp CGGTGGTGCTGGGCCGGTTGCTGCTGGGCATGCTGGTaGAGAAGACTGAGGTCTTGGATGACGCCGTGGCTC +
Preference number: 6 (lower is better)
Translates to: RWCWAGCCWACW*RRLRSWMTPWL
Trigger: GAGCCACGGCGTCATCCAAGACCTCAGTCTTCTGCACCAGCATGCCCAGCAGCAACCGGCCCAGCACCACCG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS CCA 72 bp GCCGGCCGGGTGAAGCTGGTGACCGGGGGAAGCCGGTaGTTGAACATAACCATACTCTGGGGGAAGGTGGGC +
Preference number: 6 (lower is better)
Translates to: AGRVKLVTGGSR*LNITILWGKVG
Trigger: GCCCACCTTCCCCCAGAGTATGGTTATGTTCAACCACCGGCTTCCCCCGGTCACCAGCTTCACCCGGCCGGC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS CCA 72 bp TCGCGGTGGTGCTGGGCCGGTTGCTGCTGGGCATGCTaGTGCAGAAGACTGAGGTCTTGGATGACGCCGTGG +
Preference number: 6 (lower is better)
Translates to: SRWCWAGCCWAC*CRRLRSWMTPW
Trigger: CCACGGCGTCATCCAAGACCTCAGTCTTCTGCACCAGCATGCCCAGCAGCAACCGGCCCAGCACCACCGCGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS CAA 72 bp GGCCGGGTGAAGCTGGTGACCGGGGGAAGCCGGTGGTaGAACATAACCATACTCTGGGGGAAGGTGGGCTCC +
Preference number: 6 (lower is better)
Translates to: GRVKLVTGGSRW*NITILWGKVGS
Trigger: GGAGCCCACCTTCCCCCAGAGTATGGTTATGTTCAACCACCGGCTTCCCCCGGTCACCAGCTTCACCCGGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS CCA 72 bp TCAGTCCTGCTACCGCTGCTCAGTAATACATCGCGGTaGTGCTGGGCCGGTTGCTGCTGGGCATGCTGGTGC +
Preference number: 6 (lower is better)
Translates to: SVLLPLLSNTSR*CWAGCCWACWC
Trigger: GCACCAGCATGCCCAGCAGCAACCGGCCCAGCACCACCGCGATGTATTACTGAGCAGCGGTAGCAGGACTGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS CAA 90 bp TGGTGGTGGGACGGCTGCTCCTCGGGATCCGCAGGTTTCTCCTGCTaGATGCTCACCAAGGACTGCAAGAATCCCCAGGAGGTCCTCTGC +
Preference number: 6 (lower is better)
Translates to: WWWDGCSSGSAGFSC*MLTKDCKNPQEVLC
Trigger: GCAGAGGACCTCCTGGGGATTCTTGCAGTCCTTGGTGAGCATCAAGCAGGAGAAACCTGCGGATCCCGAGGAGCAGCCGTCCCACCACCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS GCA 72 bp GCTCCTGGTTGCCGTGCTCATCAGTCCTGCTACCGCTaGTCAGTAATACATCGCGGTGGTGCTGGGCCGGTT +
Preference number: 6 (lower is better)
Translates to: APGCRAHQSCYR*SVIHRGGAGPV
Trigger: AACCGGCCCAGCACCACCGCGATGTATTACTGAGCAGCGGTAGCAGGACTGATGAGCACGGCAACCAGGAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS TCA 72 bp ACGGCTGCTCCTCGGGATCCGCAGGTTTCTCCTGCTTaGTGCTCACCAAGGACTGCAAGAATCCCCAGGAGG +
Preference number: 6 (lower is better)
Translates to: TAAPRDPQVSPA*CSPRTARIPRR
Trigger: CCTCCTGGGGATTCTTGCAGTCCTTGGTGAGCATCAAGCAGGAGAAACCTGCGGATCCCGAGGAGCAGCCGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS GCA 72 bp TGGGACGGCTGCTCCTCGGGATCCGCAGGTTTCTCCTaGTTGATGCTCACCAAGGACTGCAAGAATCCCCAG +
Preference number: 6 (lower is better)
Translates to: WDGCSSGSAGFS*LMLTKDCKNPQ
Trigger: CTGGGGATTCTTGCAGTCCTTGGTGAGCATCAAGCAGGAGAAACCTGCGGATCCCGAGGAGCAGCCGTCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS CAA 72 bp GACGGCTGCTCCTCGGGATCCGCAGGTTTCTCCTGCTaGATGCTCACCAAGGACTGCAAGAATCCCCAGGAG +
Preference number: 6 (lower is better)
Translates to: DGCSSGSAGFSC*MLTKDCKNPQE
Trigger: CTCCTGGGGATTCTTGCAGTCCTTGGTGAGCATCAAGCAGGAGAAACCTGCGGATCCCGAGGAGCAGCCGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS GCA 72 bp CCTGCTTTGGCTCCTGGTTGCCGTGCTCATCAGTCCTaGTACCGCTGCTCAGTAATACATCGCGGTGGTGCT +
Preference number: 6 (lower is better)
Translates to: PALAPGCRAHQS*YRCSVIHRGGA
Trigger: AGCACCACCGCGATGTATTACTGAGCAGCGGTAGCAGGACTGATGAGCACGGCAACCAGGAGCCAAAGCAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS CAA 72 bp GCCTTTTTGACGTTAGCGTCCTGCTTTGGCTCCTGGTaGCCGTGCTCATCAGTCCTGCTACCGCTGCTCAGT +
Preference number: 6 (lower is better)
Translates to: AFLTLASCFGSW*PCSSVLLPLLS
Trigger: ACTGAGCAGCGGTAGCAGGACTGATGAGCACGGCAACCAGGAGCCAAAGCAGGACGCTAACGTCAAAAAGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS GCA 72 bp GGCTTTGGCCTCTTTGCCTTTTTGACGTTAGCGTCCTaGTTTGGCTCCTGGTTGCCGTGCTCATCAGTCCTG +
Preference number: 6 (lower is better)
Translates to: GFGLFAFLTLAS*FGSWLPCSSVL
Trigger: CAGGACTGATGAGCACGGCAACCAGGAGCCAAAGCAGGACGCTAACGTCAAAAAGGCAAAGAGGCCAAAGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS CCA 72 bp TTTGCCTTTTTGACGTTAGCGTCCTGCTTTGGCTCCTaGTTGCCGTGCTCATCAGTCCTGCTACCGCTGCTC +
Preference number: 6 (lower is better)
Translates to: FAFLTLASCFGS*LPCSSVLLPLL
Trigger: GAGCAGCGGTAGCAGGACTGATGAGCACGGCAACCAGGAGCCAAAGCAGGACGCTAACGTCAAAAAGGCAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS CCA 72 bp TGGCCTCTTTGCCTTTTTGACGTTAGCGTCCTGCTTTaGCTCCTGGTTGCCGTGCTCATCAGTCCTGCTACC +
Preference number: 6 (lower is better)
Translates to: WPLCLFDVSVLL*LLVAVLISPAT
Trigger: GGTAGCAGGACTGATGAGCACGGCAACCAGGAGCCAAAGCAGGACGCTAACGTCAAAAAGGCAAAGAGGCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS CAA 90 bp GGCCTCTTTGCCTTTTTGACGTTAGCGTCCTGCTTTGGCTCCTGGTaGCCGTGCTCATCAGTCCTGCTACCGCTGCTCAGTAATACATCG +
Preference number: 6 (lower is better)
Translates to: GLFAFLTLASCFGSW*PCSSVLLPLLSNTS
Trigger: CGATGTATTACTGAGCAGCGGTAGCAGGACTGATGAGCACGGCAACCAGGAGCCAAAGCAGGACGCTAACGTCAAAAAGGCAAAGAGGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS TCA 72 bp GGCGCCTCATTGTCCAAAACACTGACCCCTGCAGACTaGATGACTGACTGCTGGGAGACCATGTGTCCTACA +
Preference number: 6 (lower is better)
Translates to: GASLSKTLTPAD*MTDCWETMCPT
Trigger: TGTAGGACACATGGTCTCCCAGCAGTCAGTCATTCAGTCTGCAGGGGTCAGTGTTTTGGACAATGAGGCGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS GCA 72 bp TTGACGTTAGCGTCCTGCTTTGGCTCCTGGTTGCCGTaGTCATCAGTCCTGCTACCGCTGCTCAGTAATACA +
Preference number: 6 (lower is better)
Translates to: LTLASCFGSWLP*SSVLLPLLSNT
Trigger: TGTATTACTGAGCAGCGGTAGCAGGACTGATGAGCACGGCAACCAGGAGCCAAAGCAGGACGCTAACGTCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS CAA 72 bp CAGCACTACAGTGATCACAGATATGAGGTTTCTGACTaGGGGACAGGACGGCACCTTCTCCCTCTCCAACCA +
Preference number: 6 (lower is better)
Translates to: QHYSDHRYEVSD*GTGRHLLPLQP
Trigger: TGGTTGGAGAGGGAGAAGGTGCCGTCCTGTCCCCAAGTCAGAAACCTCATATCTGTGATCACTGTAGTGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS GCA 72 bp GGCTTTGATTCCCTGAGATTCTGGCTTTGGCCTCTTTaGCTTTTTGACGTTAGCGTCCTGCTTTGGCTCCTG +
Preference number: 6 (lower is better)
Translates to: GFDSLRFWLWPL*LFDVSVLLWLL
Trigger: CAGGAGCCAAAGCAGGACGCTAACGTCAAAAAGGCAAAGAGGCCAAAGCCAGAATCTCAGGGAATCAAAGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS GCA 72 bp GGCACCTTCTCCCTCTCCAACCAAAGGTTTGGAAGATaGACTTGGCTTCCTCTTGGCTTTGATTCCCTGAGA +
Preference number: 6 (lower is better)
Translates to: GTFSLSNQRFGR*TWLPLGFDSLR
Trigger: TCTCAGGGAATCAAAGCCAAGAGGAAGCCAAGTGCATCTTCCAAACCTTTGGTTGGAGAGGGAGAAGGTGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS CAA 72 bp GACAGGACGGCACCTTCTCCCTCTCCAACCAAAGGTTaGGAAGATGCACTTGGCTTCCTCTTGGCTTTGATT +
Preference number: 6 (lower is better)
Translates to: DRTAPSPSPTKG*EDALGFLLALI
Trigger: AATCAAAGCCAAGAGGAAGCCAAGTGCATCTTCCAAACCTTTGGTTGGAGAGGGAGAAGGTGCCGTCCTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS CAA 90 bp GGTCATTGGCACCCTGCTGCCCGACTTAAACTGAGAACCGAATGCTaGTGCAAAGTTCTCAATCTGGTACGTTGTTCTAGGCTCTATGTC +
Preference number: 6 (lower is better)
Translates to: GHWHPAARLKLRTEC*CKVLNLVRCSRLYV
Trigger: GACATAGAGCCTAGAACAACGTACCAGATTGAGAACTTTGCACAAGCATTCGGTTCTCAGTTTAAGTCGGGCAGCAGGGTGCCAATGACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS TCA 72 bp AATGGTCTCCACACTATTATTCGATACGATGCCAAGTaGGCCACCTGGCTTACCAGACAAGGATTTCTGCCC +
Preference number: 6 (lower is better)
Translates to: NGLHTIIRYDAK*ATWLTRQGFLP
Trigger: GGGCAGAAATCCTTGTCTGGTAAGCCAGGTGGCTCACTTGGCATCGTATCGAATAATAGTGTGGAGACCATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS GCA 72 bp CCAAGTGAGCCACCTGGCTTACCAGACAAGGATTTCTaGCCAACTACGTCTGGTAACGGTGACACAAAATTA +
Preference number: 6 (lower is better)
Translates to: PSEPPGLPDKDF*PTTSGNGDTKL
Trigger: TAATTTTGTGTCACCGTTACCAGACGTAGTTGGGCAGAAATCCTTGTCTGGTAAGCCAGGTGGCTCACTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS GCA 72 bp TGGCACCCTGCTGCCCGACTTAAACTGAGAACCGAATaGTTGTGCAAAGTTCTCAATCTGGTACGTTGTTCT +
Preference number: 6 (lower is better)
Translates to: WHPAARLKLRTE*LCKVLNLVRCS
Trigger: AGAACAACGTACCAGATTGAGAACTTTGCACAAGCATTCGGTTCTCAGTTTAAGTCGGGCAGCAGGGTGCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS CCA 72 bp ACTTGGCTTCCTCTTGGCTTTGATTCCCTGAGATTCTaGCTTTGGCCTCTTTGCCTTTTTGACGTTAGCGTC +
Preference number: 6 (lower is better)
Translates to: TWLPLGFDSLRF*LWPLCLFDVSV
Trigger: GACGCTAACGTCAAAAAGGCAAAGAGGCCAAAGCCAGAATCTCAGGGAATCAAAGCCAAGAGGAAGCCAAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS CAA 72 bp CACCCTGCTGCCCGACTTAAACTGAGAACCGAATGCTaGTGCAAAGTTCTCAATCTGGTACGTTGTTCTAGG +
Preference number: 6 (lower is better)
Translates to: HPAARLKLRTEC*CKVLNLVRCSR
Trigger: CCTAGAACAACGTACCAGATTGAGAACTTTGCACAAGCATTCGGTTCTCAGTTTAAGTCGGGCAGCAGGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS CAA 90 bp GACTGCTGGGAGACCATGTGTCCTACATTGATAGAAAAGGCACTGTaGCTGCTGGCAGTTGGTAGGTATCTTCTCTTCTTTGAAAACTGC +
Preference number: 6 (lower is better)
Translates to: DCWETMCPTLIEKAL*LLAVGRYLLFFENC
Trigger: GCAGTTTTCAAAGAAGAGAAGATACCTACCAACTGCCAGCAGCAACAGTGCCTTTTCTATCAATGTAGGACACATGGTCTCCCAGCAGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS TCA 72 bp ATTGTCCAAAACACTGACCCCTGCAGACTGAATGACTaGCTGCTGGGAGACCATGTGTCCTACATTGATAGA +
Preference number: 6 (lower is better)
Translates to: IVQNTDPCRLND*LLGDHVSYIDR
Trigger: TCTATCAATGTAGGACACATGGTCTCCCAGCAGTCAGTCATTCAGTCTGCAGGGGTCAGTGTTTTGGACAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS TCA 72 bp GAGGACTGGAAGGCTGATGATGTCTCTAAGTTCTTCTaGGAATCTATCAGATCATCCAGCTCCTGGGAAGGT +
Preference number: 6 (lower is better)
Translates to: EDWKADDVSKFF*ESIRSSSSWEG
Trigger: ACCTTCCCAGGAGCTGGATGATCTGATAGATTCTCAGAAGAACTTAGAGACATCATCAGCCTTCCAGTCCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS TCA 72 bp ATAAAGGTCATTGGCACCCTGCTGCCCGACTTAAACTaGGAACCGAATGCTTGTGCAAAGTTCTCAATCTGG +
Preference number: 6 (lower is better)
Translates to: IKVIGTLLPDLN*EPNACAKFSIW
Trigger: CCAGATTGAGAACTTTGCACAAGCATTCGGTTCTCAGTTTAAGTCGGGCAGCAGGGTGCCAATGACCTTTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS GCA 72 bp GCTCCTTTTGCTATGGCTTCACCACACGTGCGCCTGTaGTTCAACAATCTGTCAGTCCTTGAAAAATACTGT +
Preference number: 6 (lower is better)
Translates to: APFAMASPHVRL*FNNLSVLEKYC
Trigger: ACAGTATTTTTCAAGGACTGACAGATTGTTGAAGCACAGGCGCACGTGTGGTGAAGCCATAGCAAAAGGAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS CCA 72 bp TTTGGCAACGAAGATGGCAGCACTGAGGTAACAGACTaGCCAAAACCACACTCCAAAGGAGATGTAGTGTAT +
Preference number: 6 (lower is better)
Translates to: FGNEDGSTEVTD*PKPHSKGDVVY
Trigger: ATACACTACATCTCCTTTGGAGTGTGGTTTTGGCCAGTCTGTTACCTCAGTGCTGCCATCTTCGTTGCCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS CCA 72 bp GTCCACTTCTCCATTAGAGTTAGTGATAAAGGTCATTaGCACCCTGCTGCCCGACTTAAACTGAGAACCGAA +
Preference number: 6 (lower is better)
Translates to: VHFSIRVSDKGH*HPAARLKLRTE
Trigger: TTCGGTTCTCAGTTTAAGTCGGGCAGCAGGGTGCCAATGACCTTTATCACTAACTCTAATGGAGAAGTGGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS CAA 72 bp CACACGTGCGCCTGTGCTTCAACAATCTGTCAGTCCTaGAAAAATACTGTTGGCAAGTGTCACACTTGTATG +
Preference number: 6 (lower is better)
Translates to: HTCACASTICQS*KNTVGKCHTCM
Trigger: CATACAAGTGTGACACTTGCCAACAGTATTTTTCAAGGACTGACAGATTGTTGAAGCACAGGCGCACGTGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS CAA 72 bp CTATGCTTTTCGACTTCGACTTTCTCCTTGAGGAACTaGTATTTCCCTGAGACAACACAGCCAGGTTACCCA +
Preference number: 6 (lower is better)
Translates to: LCFSTSTFSLRN*YFPETTQPGYP
Trigger: TGGGTAACCTGGCTGTGTTGTCTCAGGGAAATACAAGTTCCTCAAGGAGAAAGTCGAAGTCGAAAAGCATAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS TCA 72 bp GAAGGTGTTTGGGTGCCTGGGCTCAAATTTTCTTCTTaGACCAATTCAGAGTGTTCTCCTGAGGTGTGTAAA +
Preference number: 6 (lower is better)
Translates to: EGVWVPGLKFSS*TNSECSPEVCK
Trigger: TTTACACACCTCAGGAGAACACTCTGAATTGGTTCAAGAAGAAAATTTGAGCCCAGGCACCCAAACACCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS TCA 72 bp TTCAATAGCTATGCTTTTCGACTTCGACTTTCTCCTTaGGGAACTTGTATTTCCCTGAGACAACACAGCCAG +
Preference number: 6 (lower is better)
Translates to: FNSYAFRLRLSP*GTCISLRQHSQ
Trigger: CTGGCTGTGTTGTCTCAGGGAAATACAAGTTCCTCAAGGAGAAAGTCGAAGTCGAAAAGCATAGCTATTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS GCA 72 bp GCTGACAAATTGGAAACCGTGTCCAAGAGTAAAACCTaGATTAGTGGATTTTTCGAAAGCCTGTTGGAGGTA +
Preference number: 6 (lower is better)
Translates to: ADKLETVSKSKT*ISGFFESLLEV
Trigger: TACCTCCAACAGGCTTTCGAAAAATCCACTAATGCAGGTTTTACTCTTGGACACGGTTTCCAATTTGTCAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS CCA 72 bp ACTCTGGCTGGTGGGTGTCTTTACTCTTGTACTACATaGCTCACTTACATCAGACATCATATTTGTATACCC +
Preference number: 6 (lower is better)
Translates to: TLAGGCLYSCTT*LTYIRHHICIP
Trigger: GGGTATACAAATATGATGTCTGATGTAAGTGAGCCATGTAGTACAAGAGTAAAGACACCCACCAGCCAGAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS CCA 72 bp TTACTACTTATCGGGCCTTGCTTGCCACTTGTACTTTaGAGAAGACTAATGGTCTCCACACTATTATTCGAT +
Preference number: 6 (lower is better)
Translates to: LLLIGPCLPLVL*RRLMVSTLLFD
Trigger: ATCGAATAATAGTGTGGAGACCATTAGTCTTCTCCAAAGTACAAGTGGCAAGCAAGGCCCGATAAGTAGTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS CCA 72 bp TACCCTGAGAAATCTGACACTGAAGTCCTTACTCTATaGTCCACTTCTCCATTAGAGTTAGTGATAAAGGTC +
Preference number: 6 (lower is better)
Translates to: YPEKSDTEVLTL*STSPLELVIKV
Trigger: GACCTTTATCACTAACTCTAATGGAGAAGTGGACCATAGAGTAAGGACTTCAGTGTCAGATTTCTCAGGGTA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS CAA 72 bp ATTACTACTTATCGGGCCTTGCTTGCCACTTGTACTTaGGAGAAGACTAATGGTCTCCACACTATTATTCGA +
Preference number: 6 (lower is better)
Translates to: ITTYRALLATCT*EKTNGLHTIIR
Trigger: TCGAATAATAGTGTGGAGACCATTAGTCTTCTCCAAAGTACAAGTGGCAAGCAAGGCCCGATAAGTAGTAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS CAA 90 bp ATCATCATAATTACTACTTATCGGGCCTTGCTTGCCACTTGTACTTaGGAGAAGACTAATGGTCTCCACACTATTATTCGATACGATGCC +
Preference number: 6 (lower is better)
Translates to: IIIITTYRALLATCT*EKTNGLHTIIRYDA
Trigger: GGCATCGTATCGAATAATAGTGTGGAGACCATTAGTCTTCTCCAAAGTACAAGTGGCAAGCAAGGCCCGATAAGTAGTAATTATGATGAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS CAA 90 bp AAAGGAGATGTAGTGTATATCTGTTTTTCTGGAAACAAAGTGTGGTaGTGGAGAGGTGAAGACAAGCTGACAAATTGGAAACCGTGTCCA +
Preference number: 6 (lower is better)
Translates to: KGDVVYICFSGNKVW*WRGEDKLTNWKPCP
Trigger: TGGACACGGTTTCCAATTTGTCAGCTTGTCTTCACCTCTCCACAACCACACTTTGTTTCCAGAAAAACAGATATACACTACATCTCCTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS TCA 72 bp CTTTGTAAAACCTCATCAGGAATTCCAGACTTGTCGTaGCAAGACTTAATTTCAGCATTTAGAGCTGAGGAG +
Preference number: 6 (lower is better)
Translates to: LCKTSSGIPDLS*QDLISAFRAEE
Trigger: CTCCTCAGCTCTAAATGCTGAAATTAAGTCTTGTCACGACAAGTCTGGAATTCCTGATGAGGTTTTACAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS GCA 72 bp CTTCCTTTCTTAAAGATCAATTTTGGCACCCTTTTCTaGAGTTCATCTATTCCAGTGCCAATTATGCTCCCA +
Preference number: 6 (lower is better)
Translates to: LPFLKINFGTLF*SSSIPVPIMLP
Trigger: TGGGAGCATAATTGGCACTGGAATAGATGAACTGCAGAAAAGGGTGCCAAAATTGATCTTTAAGAAAGGAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS CCA 72 bp GATGTAGTGTATATCTGTTTTTCTGGAAACAAAGTGTaGTTGTGGAGAGGTGAAGACAAGCTGACAAATTGG +
Preference number: 6 (lower is better)
Translates to: DVVYICFSGNKV*LWRGEDKLTNW
Trigger: CCAATTTGTCAGCTTGTCTTCACCTCTCCACAACCACACTTTGTTTCCAGAAAAACAGATATACACTACATC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS CAA 72 bp GTAGTGTATATCTGTTTTTCTGGAAACAAAGTGTGGTaGTGGAGAGGTGAAGACAAGCTGACAAATTGGAAA +
Preference number: 6 (lower is better)
Translates to: VVYICFSGNKVW*WRGEDKLTNWK
Trigger: TTTCCAATTTGTCAGCTTGTCTTCACCTCTCCACAACCACACTTTGTTTCCAGAAAAACAGATATACACTAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS CAA 90 bp TCTTTACTCTTGTACTACATGGCTCACTTACATCAGACATCATATTaGTATACCCTGAGAAATCTGACACTGAAGTCCTTACTCTATGGT +
Preference number: 6 (lower is better)
Translates to: SLLLYYMAHLHQTSY*YTLRNLTLKSLLYG
Trigger: ACCATAGAGTAAGGACTTCAGTGTCAGATTTCTCAGGGTATACAAATATGATGTCTGATGTAAGTGAGCCATGTAGTACAAGAGTAAAGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2
CDS CAA 72 bp TTGTACTACATGGCTCACTTACATCAGACATCATATTaGTATACCCTGAGAAATCTGACACTGAAGTCCTTA +
Preference number: 6 (lower is better)
Translates to: LYYMAHLHQTSY*YTLRNLTLKSL
Trigger: TAAGGACTTCAGTGTCAGATTTCTCAGGGTATACAAATATGATGTCTGATGTAAGTGAGCCATGTAGTACAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047734.15
ENSMUST00000112046.2