RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZFP275 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031365

Ensembl transcript IDs: ENSMUST00000033731.4, ENSMUST00000114499.8

Found 288 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTACAACATCTGTCAGGGCACAACTGGAAACTCAGGCCACAGCCCTaGTGTGGCCACCTTCTTCACCTGCTGCTTCTTCTCCTGAGGGGG +
Preference number: 1 (lower is better)
Translates to: LQHLSGHNWKLRPQP*CGHLLHLLLLLLRG
Trigger: CCCCCTCAGGAGAAGAAGCAGCAGGTGAAGAAGGTGGCCACATCAGGGCTGTGGCCTGAGTTTCCAGTTGTGCCCTGACAGATGTTGTAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR GCA 90 bp AAGTGCTGCCCACAGAGAGTCTGCATCTTGGATGTGGCTTGGGCATaGTTCTCTGGCCCACTCTCATCCAACCTGCCCACCTTGTATGGT +
Preference number: 1 (lower is better)
Translates to: KCCPQRVCILDVAWA*FSGPLSSNLPTLYG
Trigger: ACCATACAAGGTGGGCAGGTTGGATGAGAGTGGGCCAGAGAAGCATGCCCAAGCCACATCCAAGATGCAGACTCTCTGTGGGCAGCACTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR CCA 90 bp CTTCTCTCCAGCATAGAGAAGGTCTACAGGGCCACTGTGGTGGCCTaGGGCTTTCGAGAGGCCCTTCTAACCAAGATCAGAGGTCACTGT +
Preference number: 1 (lower is better)
Translates to: LLSSIEKVYRATVVA*GFREALLTKIRGHC
Trigger: ACAGTGACCTCTGATCTTGGTTAGAAGGGCCTCTCGAAAGCCCCAGGCCACCACAGTGGCCCTGTAGACCTTCTCTATGCTGGAGAGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR TCA 90 bp TTGGGTCAGGTGTCTGGGGTTGGCTTAATTAGTGTGGTCCAGAAGTaGGGTGGCAAGTCACGTGGCATACAACAGGGCCACAGCCTAGGA +
Preference number: 1 (lower is better)
Translates to: LGQVSGVGLISVVQK*GGKSRGIQQGHSLG
Trigger: TCCTAGGCTGTGGCCCTGTTGTATGCCACGTGACTTGCCACCTCACTTCTGGACCACACTAATTAAGCCAACCCCAGACACCTGACCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR GCA 90 bp CATGTCTCTAGTGTGCCTCAGTGGCCAGGTTGTATAGTCAAGTGCTaGCCACAGAGAGTCTGCATCTTGGATGTGGCTTGGGCATGCTTC +
Preference number: 1 (lower is better)
Translates to: HVSSVPQWPGCIVKC*PQRVCILDVAWACF
Trigger: GAAGCATGCCCAAGCCACATCCAAGATGCAGACTCTCTGTGGGCAGCACTTGACTATACAACCTGGCCACTGAGGCACACTAGAGACATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR GCA 90 bp AGACATGTCTCTAGTGTGCCTCAGTGGCCAGGTTGTATAGTCAAGTaGTGCCCACAGAGAGTCTGCATCTTGGATGTGGCTTGGGCATGC +
Preference number: 1 (lower is better)
Translates to: RHVSSVPQWPGCIVK*CPQRVCILDVAWAC
Trigger: GCATGCCCAAGCCACATCCAAGATGCAGACTCTCTGTGGGCAGCACTTGACTATACAACCTGGCCACTGAGGCACACTAGAGACATGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR GCA 90 bp TTGCCCTCTTGGGCATGGCTACTCCAAGTCATAGACCAGACCTGGTaGAACCAGCTTTTGTGGCATGGTGTGCAGGCTACTGGAAGAACA +
Preference number: 1 (lower is better)
Translates to: LPSWAWLLQVIDQTW*NQLLWHGVQATGRT
Trigger: TGTTCTTCCAGTAGCCTGCACACCATGCCACAAAAGCTGGTTGCACCAGGTCTGGTCTATGACTTGGAGTAGCCATGCCCAAGAGGGCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR CCA 90 bp CCAGACCTGGTGCAACCAGCTTTTGTGGCATGGTGTGCAGGCTACTaGAAGAACATAGCTCCATTTTTCTCCAGGCCTATATGTCACCCC +
Preference number: 1 (lower is better)
Translates to: PDLVQPAFVAWCAGY*KNIAPFFSRPICHP
Trigger: GGGGTGACATATAGGCCTGGAGAAAAATGGAGCTATGTTCTTCCAGTAGCCTGCACACCATGCCACAAAAGCTGGTTGCACCAGGTCTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR CCA 90 bp TATGGTAGGACCCAAGCAGCTCTGGGCAGGCCAGCAAGATCTCTTTaGTTCTACTTCCAGGAGCAACTCCTTGAAATACCTTGTGCGTCC +
Preference number: 1 (lower is better)
Translates to: YGRTQAALGRPARSL*FYFQEQLLEIPCAS
Trigger: GGACGCACAAGGTATTTCAAGGAGTTGCTCCTGGAAGTAGAACCAAAGAGATCTTGCTGGCCTGCCCAGAGCTGCTTGGGTCCTACCATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR CCA 90 bp GGTGGCTTCCTGTCCTCTGATCTTGTTTTATTGCCCTCTTGGGCATaGCTACTCCAAGTCATAGACCAGACCTGGTGCAACCAGCTTTTG +
Preference number: 1 (lower is better)
Translates to: GGFLSSDLVLLPSWA*LLQVIDQTWCNQLL
Trigger: CAAAAGCTGGTTGCACCAGGTCTGGTCTATGACTTGGAGTAGCCATGCCCAAGAGGGCAATAAAACAAGATCAGAGGACAGGAAGCCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR CCA 90 bp ATGTCAGGTGGCTTCCTGTCCTCTGATCTTGTTTTATTGCCCTCTTaGGCATGGCTACTCCAAGTCATAGACCAGACCTGGTGCAACCAG +
Preference number: 1 (lower is better)
Translates to: MSGGFLSSDLVLLPS*AWLLQVIDQTWCNQ
Trigger: CTGGTTGCACCAGGTCTGGTCTATGACTTGGAGTAGCCATGCCCAAGAGGGCAATAAAACAAGATCAGAGGACAGGAAGCCACCTGACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR CCA 90 bp ACTGAGCCCACAGAGCAACAGAAGTTGCTATGTAGCAACTGTTGTTaGCTTCTCTCCAGCATAGAGAAGGTCTACAGGGCCACTGTGGTG +
Preference number: 1 (lower is better)
Translates to: TEPTEQQKLLCSNCC*LLSSIEKVYRATVV
Trigger: CACCACAGTGGCCCTGTAGACCTTCTCTATGCTGGAGAGAAGCCAACAACAGTTGCTACATAGCAACTTCTGTTGCTCTGTGGGCTCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR CCA 90 bp ACTCCAAGTCATAGACCAGACCTGGTGCAACCAGCTTTTGTGGCATaGTGTGCAGGCTACTGGAAGAACATAGCTCCATTTTTCTCCAGG +
Preference number: 1 (lower is better)
Translates to: TPSHRPDLVQPAFVA*CAGYWKNIAPFFSR
Trigger: CCTGGAGAAAAATGGAGCTATGTTCTTCCAGTAGCCTGCACACCATGCCACAAAAGCTGGTTGCACCAGGTCTGGTCTATGACTTGGAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR GCA 90 bp AGAGGATCCAAGGAAATCCACCCCCACATTACCCAAGGCAAAGGATaGAACTATGGGCCACATGTTAAAGCCACAACACGGACTGCATTT +
Preference number: 1 (lower is better)
Translates to: RGSKEIHPHITQGKG*NYGPHVKATTRTAF
Trigger: AAATGCAGTCCGTGTTGTGGCTTTAACATGTGGCCCATAGTTGCATCCTTTGCCTTGGGTAATGTGGGGGTGGATTTCCTTGGATCCTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR GCA 90 bp CATAGCCCTAAAAGGCCAAGTCCATCTTCTTCAATCAGGTCTGACTaGTTGTTGCTGCCTTTGGGTCAGGTGTCTGGGGTTGGCTTAATT +
Preference number: 1 (lower is better)
Translates to: HSPKRPSPSSSIRSD*LLLPLGQVSGVGLI
Trigger: AATTAAGCCAACCCCAGACACCTGACCCAAAGGCAGCAACAAGCAGTCAGACCTGATTGAAGAAGATGGACTTGGCCTTTTAGGGCTATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR GCA 90 bp TCAGGTCAATCTTCTGTGTCTGAGATGTTTCTTAGATGGAGCTGCTaGTCAGCCAGTGAATCCAAAATAGTCAAGGCTCCCGACAGCTTG +
Preference number: 1 (lower is better)
Translates to: SGQSSVSEMFLRWSC*SASESKIVKAPDSL
Trigger: CAAGCTGTCGGGAGCCTTGACTATTTTGGATTCACTGGCTGAGCAGCAGCTCCATCTAAGAAACATCTCAGACACAGAAGATTGACCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR TCA 90 bp CAATGGCCCAACTGCAGTGTGATCAGTTTCAATTTCTGTGCCACATaGATGTCAGGTGGCTTCCTGTCCTCTGATCTTGTTTTATTGCCC +
Preference number: 1 (lower is better)
Translates to: QWPNCSVISFNFCAT*MSGGFLSSDLVLLP
Trigger: GGGCAATAAAACAAGATCAGAGGACAGGAAGCCACCTGACATTCATGTGGCACAGAAATTGAAACTGATCACACTGCAGTTGGGCCATTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR GCA 90 bp GGGCAGGTGTCATGCCACTTCAAGCACAAAATCAAGCACACAGAATaGAATATCATGGGAGAAAAATGCCCACCCATCTTTCTGGTGATC +
Preference number: 1 (lower is better)
Translates to: GQVSCHFKHKIKHTE*NIMGEKCPPIFLVI
Trigger: GATCACCAGAAAGATGGGTGGGCATTTTTCTCCCATGATATTGCATTCTGTGTGCTTGATTTTGTGCTTGAAGTGGCATGACACCTGCCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR TCA 90 bp TTTCTGGTGCTAATGAGCTATGGGATGCCAGTAAGTGACCTTCACTaGGTACATACACTTCCTTGCCAGGTAGTATCCTTACATGCAAGG +
Preference number: 1 (lower is better)
Translates to: FLVLMSYGMPVSDLH*VHTLPCQVVSLHAR
Trigger: CCTTGCATGTAAGGATACTACCTGGCAAGGAAGTGTATGTACTCAGTGAAGGTCACTTACTGGCATCCCATAGCTCATTAGCACCAGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR GCA 90 bp GTAGGAAGTGATGCCAGAACACATGGGCAAATTTCTCAATCTAGTTaGCCAAAGCAGAAACCACAAAGTTCTCTCATTCCAGAGTCACTT +
Preference number: 1 (lower is better)
Translates to: VGSDARTHGQISQSS*PKQKPQSSLIPESL
Trigger: AAGTGACTCTGGAATGAGAGAACTTTGTGGTTTCTGCTTTGGGCAACTAGATTGAGAAATTTGCCCATGTGTTCTGGCATCACTTCCTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR CCA 90 bp AATATCATGGGAGAAAAATGCCCACCCATCTTTCTGGTGATCTGGTaGGGATTGTTCTGTAAATCCAAGAGTGGATATGATACAACCGAT +
Preference number: 1 (lower is better)
Translates to: NIMGEKCPPIFLVIW*GLFCKSKSGYDTTD
Trigger: ATCGGTTGTATCATATCCACTCTTGGATTTACAGAACAATCCCCACCAGATCACCAGAAAGATGGGTGGGCATTTTTCTCCCATGATATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR TCA 90 bp GAACATACAGCCAGGCCTGCTATGGTAGGACCCAAGCAGCTCTGGGCAGGCCAGGGAGGAGACTTCTGGTaGGAGCCTCACACAGGGATT +
Preference number: 2 (lower is better)
Translates to: EHTARPAMVGPKQLWAGQGGDFW*EPHTGI
Trigger: AATCCCTGTGTGAGGCTCTCACCAGAAGTCTCCTCC...CTGGCCTGCCCAGAGCTGCTTGGGTCCTACCATAGCAGGCCTGGCTGTATGTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR CCA 90 bp TGTGGTGGCCTGGGGCTTTCGAGAGGCCCTTCTAACCAAGATCAGAGGTCACTGCTGTCAGGGCACAACTaGAAACTCAGGCCACAGCCC +
Preference number: 2 (lower is better)
Translates to: CGGLGLSRGPSNQDQRSLLSGHN*KLRPQP
Trigger: GGGCTGTGGCCTGAGTTTCCAGTTGTGCCCTGACAG...CAGTGACCTCTGATCTTGGTTAGAAGGGCCTCTCGAAAGCCCCAGGCCACCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR GCA 90 bp GAACATACAGCCAGGCCTGCTATGGTAGGACCCAAGCAGCTCTGGGCAGGCCAGGCAGGGCAGGTGTCATaGCACTTCAAGCACAAAATC +
Preference number: 2 (lower is better)
Translates to: EHTARPAMVGPKQLWAGQAGQVS*HFKHKI
Trigger: GATTTTGTGCTTGAAGTGGCATGACACCTGCCCTGC...CTGGCCTGCCCAGAGCTGCTTGGGTCCTACCATAGCAGGCCTGGCTGTATGTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR CCA 90 bp TGTGGTGGCCTGGGGCTTTCGAGAGGCCCTTCTAACCAAGATCAGAGGTCACTGCGACAGCTTGAAGGATaGCTAGCTGTTGCCACACTG +
Preference number: 2 (lower is better)
Translates to: CGGLGLSRGPSNQDQRSLRQLEG*LAVATL
Trigger: CAGTGTGGCAACAGCTAGCCATCCTTCAAGCTGTCG...CAGTGACCTCTGATCTTGGTTAGAAGGGCCTCTCGAAAGCCCCAGGCCACCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR CCA 90 bp AACTATGGGCCACATGTTAAAGCCACAACACGGACTGCATTTGGAGAGAGTGGGACAGGGCCACTGTGGTaGCCTGGGGCTTTCGAGAGG +
Preference number: 2 (lower is better)
Translates to: NYGPHVKATTRTAFGESGTGPLW*PGAFER
Trigger: CCTCTCGAAAGCCCCAGGCCACCACAGTGGCCCTGT...CCCACTCTCTCCAAATGCAGTCCGTGTTGTGGCTTTAACATGTGGCCCATAGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR CAA 90 bp TATAGTCAAGTGCTGCCCACAGAGAGTCTGCATCTTGGATGTGGCTaGGGCATGCTTCTCTGGCCCACTCTCATCCAACCTGCCCACCTT +
Preference number: 2 (lower is better)
Translates to: YSQVLPTESLHLGCG*GMLLWPTLIQPAHL
Trigger: AAGGTGGGCAGGTTGGATGAGAGTGGGCCAGAGAAGCATGCCCAAGCCACATCCAAGATGCAGACTCTCTGTGGGCAGCACTTGACTATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR CCA 90 bp GAACATACAGCCAGGCCTGCTATGGTAGGACCCAAGCAGCTCTGGGCAGGCCAGTCCAGAGTCACTTGTTaGGAGGAGAATGAAGGTTAC +
Preference number: 2 (lower is better)
Translates to: EHTARPAMVGPKQLWAGQSRVTC*EENEGY
Trigger: GTAACCTTCATTCTCCTCCCAACAAGTGACTCTGGA...CTGGCCTGCCCAGAGCTGCTTGGGTCCTACCATAGCAGGCCTGGCTGTATGTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR GCA 90 bp AGTCATAGACCAGACCTGGTGCAACCAGCTTTTGTGGCATGGTGTGCAGGCTACTGCCCACAGAGAGTCTaGATCTTGGATGTGGCTTGG +
Preference number: 2 (lower is better)
Translates to: SHRPDLVQPAFVAWCAGYCPQRV*ILDVAW
Trigger: CCAAGCCACATCCAAGATGCAGACTCTCTGTGGGCA...GTAGCCTGCACACCATGCCACAAAAGCTGGTTGCACCAGGTCTGGTCTATGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR GCA 90 bp GAACATACAGCCAGGCCTGCTATGGTAGGACCCAAGCAGCTCTGGGCAGGCCAGAAGCAATGGCCCAACTaGAGTGTGATCAGTTTCAAT +
Preference number: 2 (lower is better)
Translates to: EHTARPAMVGPKQLWAGQKQWPN*SVISFN
Trigger: ATTGAAACTGATCACACTGCAGTTGGGCCATTGCTT...CTGGCCTGCCCAGAGCTGCTTGGGTCCTACCATAGCAGGCCTGGCTGTATGTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR TCA 90 bp AACTATGGGCCACATGTTAAAGCCACAACACGGACTGCATTTGGAGAGAGTGGGTTCCCAGGATGGGGCTaGAAGCCCTTTCAGGCTATG +
Preference number: 2 (lower is better)
Translates to: NYGPHVKATTRTAFGESGFPGWG*KPFQAM
Trigger: CATAGCCTGAAAGGGCTTTCAGCCCCATCCTGGGAA...CCCACTCTCTCCAAATGCAGTCCGTGTTGTGGCTTTAACATGTGGCCCATAGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR GCA 90 bp AACTATGGGCCACATGTTAAAGCCACAACACGGACTGCATTTGGAGAGAGTGGGGATGTGGCTTGGGCATaGTTCTCTGGCCCACTCTCA +
Preference number: 2 (lower is better)
Translates to: NYGPHVKATTRTAFGESGDVAWA*FSGPLS
Trigger: TGAGAGTGGGCCAGAGAAGCATGCCCAAGCCACATC...CCCACTCTCTCCAAATGCAGTCCGTGTTGTGGCTTTAACATGTGGCCCATAGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR CCA 90 bp TGTGGTGGCCTGGGGCTTTCGAGAGGCCCTTCTAACCAAGATCAGAGGTCACTGCAACTGATGTTTGTTTaGGGTGTTCATAGGGGTCAC +
Preference number: 2 (lower is better)
Translates to: CGGLGLSRGPSNQDQRSLQLMFV*GVHRGH
Trigger: GTGACCCCTATGAACACCCCAAACAAACATCAGTTG...CAGTGACCTCTGATCTTGGTTAGAAGGGCCTCTCGAAAGCCCCAGGCCACCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR TCA 90 bp TTGGACATAGAAGTACACCTAGAGGATCCAAGGAAATCCACCCCCACATTACCCGGAGGAGACTTCTGGTaGGAGCCTCACACAGGGATT +
Preference number: 2 (lower is better)
Translates to: LDIEVHLEDPRKSTPTLPGGDFW*EPHTGI
Trigger: AATCCCTGTGTGAGGCTCTCACCAGAAGTCTCCTCC...GGGTAATGTGGGGGTGGATTTCCTTGGATCCTCTAGGTGTACTTCTATGTCCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR GCA 90 bp GTCATAGACCAGACCTGGTGCAACCAGCTTTTGTGGCATGGTGTGCAGGCTACTCAGGGATTGTCACAGTaGTACCATAGCTCAGATCAC +
Preference number: 2 (lower is better)
Translates to: VIDQTWCNQLLWHGVQATQGLSQ*YHSSDH
Trigger: GTGATCTGAGCTATGGTAGCACTGTGACAATCCCTG...AGTAGCCTGCACACCATGCCACAAAAGCTGGTTGCACCAGGTCTGGTCTATGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR CCA 90 bp AACTATGGGCCACATGTTAAAGCCACAACACGGACTGCATTTGGAGAGAGTGGGATCTTGGATGTGGCTTaGGCATGCTTCTCTGGCCCA +
Preference number: 2 (lower is better)
Translates to: NYGPHVKATTRTAFGESGILDVA*ACFSGP
Trigger: TGGGCCAGAGAAGCATGCCCAAGCCACATCCAAGAT...CCCACTCTCTCCAAATGCAGTCCGTGTTGTGGCTTTAACATGTGGCCCATAGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR TCA 90 bp AAGCTTGCTCACGTTTGCATTGGACATAGAAGTACACCTAGAGGATCCAAGGAAAGGCTCCCGACAGCTTaGAGGATGGCTAGCTGTTGC +
Preference number: 2 (lower is better)
Translates to: KLAHVCIGHRSTPRGSKERLPTA*RMASCC
Trigger: GCAACAGCTAGCCATCCTTCAAGCTGTCGGGAGCCT...TTCCTTGGATCCTCTAGGTGTACTTCTATGTCCAATGCAAACGTGAGCAAGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR GCA 90 bp TTGGACATAGAAGTACACCTAGAGGATCCAAGGAAATCCACCCCCACATTACCCCTGAGCCATAGCCTCTaGAGACACCTGCTATGGATC +
Preference number: 2 (lower is better)
Translates to: LDIEVHLEDPRKSTPTLPLSHSL*RHLLWI
Trigger: GATCCATAGCAGGTGTCTGCAGAGGCTATGGCTCAG...GGGTAATGTGGGGGTGGATTTCCTTGGATCCTCTAGGTGTACTTCTATGTCCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR GCA 90 bp CTGGTGCAACCAGCTTTTGTGGCATGGTGTGCAGGCTACTGGAAGAACATAGCTCAGGGATTGTCACAGTaGTACCATAGCTCAGATCAC +
Preference number: 2 (lower is better)
Translates to: LVQPAFVAWCAGYWKNIAQGLSQ*YHSSDH
Trigger: GTGATCTGAGCTATGGTAGCACTGTGACAATCCCTG...AGCTATGTTCTTCCAGTAGCCTGCACACCATGCCACAAAAGCTGGTTGCACCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR GCA 90 bp AACTATGGGCCACATGTTAAAGCCACAACACGGACTGCATTTGGAGAGAGTGGGTCCCCACGTCAAAGCTaGAAATGGAGGGAGTGTTGT +
Preference number: 2 (lower is better)
Translates to: NYGPHVKATTRTAFGESGSPRQS*KWRECC
Trigger: ACAACACTCCCTCCATTTGCAGCTTTGACGTGGGGA...CCCACTCTCTCCAAATGCAGTCCGTGTTGTGGCTTTAACATGTGGCCCATAGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR GCA 90 bp GGGCATGCTTCTCTGGCCCACTCTCATCCAACCTGCCCACCTTGTATGGTCACTGTACATACACTTCCTTaGCAGGTAGTATCCTTACAT +
Preference number: 2 (lower is better)
Translates to: GHASLAHSHPTCPPCMVTVHTLP*QVVSLH
Trigger: ATGTAAGGATACTACCTGGCAAGGAAGTGTATGTAC...AGTGACCATACAAGGTGGGCAGGTTGGATGAGAGTGGGCCAGAGAAGCATGCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR CCA 90 bp AACTATGGGCCACATGTTAAAGCCACAACACGGACTGCATTTGGAGAGAGTGGGAGAGAGTCTGCATCTTaGATGTGGCTTGGGCATGCT +
Preference number: 2 (lower is better)
Translates to: NYGPHVKATTRTAFGESGRESAS*MWLGHA
Trigger: AGCATGCCCAAGCCACATCCAAGATGCAGACTCTCT...CCCACTCTCTCCAAATGCAGTCCGTGTTGTGGCTTTAACATGTGGCCCATAGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR CCA 90 bp AACTATGGGCCACATGTTAAAGCCACAACACGGACTGCATTTGGAGAGAGTGGGTGCAACCAGCTTTTGTaGCATGGTGTGCAGGCTACT +
Preference number: 2 (lower is better)
Translates to: NYGPHVKATTRTAFGESGCNQLL*HGVQAT
Trigger: AGTAGCCTGCACACCATGCCACAAAAGCTGGTTGCA...CCCACTCTCTCCAAATGCAGTCCGTGTTGTGGCTTTAACATGTGGCCCATAGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR CCA 90 bp ACACACTGCAAGAAGCTTGCTCACGTTTGCATTGGACATAGAAGTACACCTAGAGAGGGTAGGAAGGGATaGGAAGAGATGCCACGCCCT +
Preference number: 2 (lower is better)
Translates to: THCKKLAHVCIGHRSTPREGRKG*EEMPRP
Trigger: AGGGCGTGGCATCTCTTCCCATCCCTTCCTACCCTC...TCTAGGTGTACTTCTATGTCCAATGCAAACGTGAGCAAGCTTCTTGCAGTGTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR CAA 90 bp AGCCCTAAAAGGCCAAGTCCATCTTCTTCAATCAGGTCTGACTGCTaGTTGCTGCCTTTGGGTCAGGTGTCTGGGGTTGGCTTAATTAGT +
Preference number: 2 (lower is better)
Translates to: SPKRPSPSSSIRSDC*LLPLGQVSGVGLIS
Trigger: ACTAATTAAGCCAACCCCAGACACCTGACCCAAAGGCAGCAACAAGCAGTCAGACCTGATTGAAGAAGATGGACTTGGCCTTTTAGGGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR TCA 90 bp TTGGACATAGAAGTACACCTAGAGGATCCAAGGAAATCCACCCCCACATTACCCTTCATCTCCTTTGACTaGGCCATAGCCTCTGCAGAC +
Preference number: 2 (lower is better)
Translates to: LDIEVHLEDPRKSTPTLPFISFD*AIASAD
Trigger: GTCTGCAGAGGCTATGGCTCAGTCAAAGGAGATGAA...GGGTAATGTGGGGGTGGATTTCCTTGGATCCTCTAGGTGTACTTCTATGTCCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR TCA 90 bp CTGGTGCAACCAGCTTTTGTGGCATGGTGTGCAGGCTACTGGAAGAACATAGCTGTAAGTGACCTTCACTaGGTACATACACTTCCTTGC +
Preference number: 2 (lower is better)
Translates to: LVQPAFVAWCAGYWKNIAVSDLH*VHTLPC
Trigger: GCAAGGAAGTGTATGTACTCAGTGAAGGTCACTTAC...AGCTATGTTCTTCCAGTAGCCTGCACACCATGCCACAAAAGCTGGTTGCACCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR TCA 90 bp AAAGCAGAAACCACAAAGTTCTCTCATTCCAGAGTCACTTGTTGGGAGGAGAATAGGCTCCCGACAGCTTaGAGGATGGCTAGCTGTTGC +
Preference number: 2 (lower is better)
Translates to: KAETTKFSHSRVTCWEENRLPTA*RMASCC
Trigger: GCAACAGCTAGCCATCCTTCAAGCTGTCGGGAGCCT...ATTCTCCTCCCAACAAGTGACTCTGGAATGAGAGAACTTTGTGGTTTCTGCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR GCA 90 bp GCACACAGAATGCAATATCATGGGAGAAAAATGCCCACCCATCTTTCTGGTGATGATGTGGCTTGGGCATaGTTCTCTGGCCCACTCTCA +
Preference number: 2 (lower is better)
Translates to: AHRMQYHGRKMPTHLSGDDVAWA*FSGPLS
Trigger: TGAGAGTGGGCCAGAGAAGCATGCCCAAGCCACATC...ATCACCAGAAAGATGGGTGGGCATTTTTCTCCCATGATATTGCATTCTGTGTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR GCA 90 bp TTGGACATAGAAGTACACCTAGAGGATCCAAGGAAATCCACCCCCACATTACCCGGTTGTATAGTCAAGTaGTGCCCACAGAGAGTCTGC +
Preference number: 2 (lower is better)
Translates to: LDIEVHLEDPRKSTPTLPGCIVK*CPQRVC
Trigger: GCAGACTCTCTGTGGGCAGCACTTGACTATACAACC...GGGTAATGTGGGGGTGGATTTCCTTGGATCCTCTAGGTGTACTTCTATGTCCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR CCA 90 bp GTCATAGACCAGACCTGGTGCAACCAGCTTTTGTGGCATGGTGTGCAGGCTACTGTCACTGGACTGAACTaGCTTAGCAAAATGAAAGGA +
Preference number: 2 (lower is better)
Translates to: VIDQTWCNQLLWHGVQATVTGLN*LSKMKG
Trigger: TCCTTTCATTTTGCTAAGCCAGTTCAGTCCAGTGAC...AGTAGCCTGCACACCATGCCACAAAAGCTGGTTGCACCAGGTCTGGTCTATGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR CCA 90 bp AGTCATAGACCAGACCTGGTGCAACCAGCTTTTGTGGCATGGTGTGCAGGCTACGTCACTGGACTGAACTaGCTTAGCAAAATGAAAGGA +
Preference number: 2 (lower is better)
Translates to: SHRPDLVQPAFVAWCAGYVTGLN*LSKMKG
Trigger: TCCTTTCATTTTGCTAAGCCAGTTCAGTCCAGTGAC...GTAGCCTGCACACCATGCCACAAAAGCTGGTTGCACCAGGTCTGGTCTATGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR CAA 90 bp ATGCATAGACAAGCACACACTGCAAGAAGCTTGCTCACGTTTGCATaGGACATAGAAGTACACCTAGAGGATCCAAGGAAATCCACCCCC +
Preference number: 2 (lower is better)
Translates to: MHRQAHTARSLLTFA*DIEVHLEDPRKSTP
Trigger: GGGGGTGGATTTCCTTGGATCCTCTAGGTGTACTTCTATGTCCAATGCAAACGTGAGCAAGCTTCTTGCAGTGTGTGCTTGTCTATGCAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR TCA 90 bp GTCATAGACCAGACCTGGTGCAACCAGCTTTTGTGGCATGGTGTGCAGGCTACTATTGTAGTCATTGCATaGAAGATGAGACTAGCAGTC +
Preference number: 2 (lower is better)
Translates to: VIDQTWCNQLLWHGVQATIVVIA*KMRLAV
Trigger: GACTGCTAGTCTCATCTTTCATGCAATGACTACAAT...AGTAGCCTGCACACCATGCCACAAAAGCTGGTTGCACCAGGTCTGGTCTATGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR TCA 90 bp AGTCATAGACCAGACCTGGTGCAACCAGCTTTTGTGGCATGGTGTGCAGGCTACATTGTAGTCATTGCATaGAAGATGAGACTAGCAGTC +
Preference number: 2 (lower is better)
Translates to: SHRPDLVQPAFVAWCAGYIVVIA*KMRLAV
Trigger: GACTGCTAGTCTCATCTTTCATGCAATGACTACAAT...GTAGCCTGCACACCATGCCACAAAAGCTGGTTGCACCAGGTCTGGTCTATGACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR GCA 90 bp ACACACTGCAAGAAGCTTGCTCACGTTTGCATTGGACATAGAAGTACACCTAGACTGAGCCATAGCCTCTaGAGACACCTGCTATGGATC +
Preference number: 2 (lower is better)
Translates to: THCKKLAHVCIGHRSTPRLSHSL*RHLLWI
Trigger: GATCCATAGCAGGTGTCTGCAGAGGCTATGGCTCAG...TCTAGGTGTACTTCTATGTCCAATGCAAACGTGAGCAAGCTTCTTGCAGTGTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR CCA 90 bp AGTCATAGACCAGACCTGGTGCAACCAGCTTTTGTGGCATGGTGTGCAGGCTACACTAATATGTTGTTATaGCTTGGGAGGAGACTTCTG +
Preference number: 2 (lower is better)
Translates to: SHRPDLVQPAFVAWCAGYTNMLL*LGRRLL
Trigger: CAGAAGTCTCCTCCCAAGCCATAACAACATATTAGT...GTAGCCTGCACACCATGCCACAAAAGCTGGTTGCACCAGGTCTGGTCTATGACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR TCA 90 bp GCACACAGAATGCAATATCATGGGAGAAAAATGCCCACCCATCTTTCTGGTGATTTCATCTCCTTTGACTaGGCCATAGCCTCTGCAGAC +
Preference number: 2 (lower is better)
Translates to: AHRMQYHGRKMPTHLSGDFISFD*AIASAD
Trigger: GTCTGCAGAGGCTATGGCTCAGTCAAAGGAGATGAA...ATCACCAGAAAGATGGGTGGGCATTTTTCTCCCATGATATTGCATTCTGTGTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR TCA 90 bp AACTATGGGCCACATGTTAAAGCCACAACACGGACTGCATTTGGAGAGAGTGGGCCCAGGAGTGATGTTTaGAAAATCACCACTTTAGGT +
Preference number: 2 (lower is better)
Translates to: NYGPHVKATTRTAFGESGPRSDV*KITTLG
Trigger: ACCTAAAGTGGTGATTTTTCAAACATCACTCCTGGG...CCCACTCTCTCCAAATGCAGTCCGTGTTGTGGCTTTAACATGTGGCCCATAGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR TCA 90 bp ACTGAGCAAGAAATGGCATTCTTTCAAGGTAAAGGTGCCATATTTGCTCCCTTGTGTGACGGTAGGAAGTaGTGCCAGAACACATGGGCA +
Preference number: 2 (lower is better)
Translates to: TEQEMAFFQGKGAIFAPLCDGRK*CQNTWA
Trigger: TGCCCATGTGTTCTGGCATCACTTCCTACCGTCACA...CAAGGGAGCAAATATGGCACCTTTACCTTGAAAGAATGCCATTTCTTGCTCAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR TCA 90 bp ACACACTGCAAGAAGCTTGCTCACGTTTGCATTGGACATAGAAGTACACCTAGAAGAAACCACCAGAACTaGGCCCACAGAGCAACAGAA +
Preference number: 2 (lower is better)
Translates to: THCKKLAHVCIGHRSTPRRNHQN*AHRATE
Trigger: TTCTGTTGCTCTGTGGGCTCAGTTCTGGTGGTTTCT...TCTAGGTGTACTTCTATGTCCAATGCAAACGTGAGCAAGCTTCTTGCAGTGTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR TCA 90 bp GCACACAGAATGCAATATCATGGGAGAAAAATGCCCACCCATCTTTCTGGTGATAGAAACCACCAGAACTaGGCCCACAGAGCAACAGAA +
Preference number: 2 (lower is better)
Translates to: AHRMQYHGRKMPTHLSGDRNHQN*AHRATE
Trigger: TTCTGTTGCTCTGTGGGCTCAGTTCTGGTGGTTTCT...ATCACCAGAAAGATGGGTGGGCATTTTTCTCCCATGATATTGCATTCTGTGTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR GCA 90 bp AAAGCAGAAACCACAAAGTTCTCTCATTCCAGAGTCACTTGTTGGGAGGAGAATTGCCCACAGAGAGTCTaGATCTTGGATGTGGCTTGG +
Preference number: 2 (lower is better)
Translates to: KAETTKFSHSRVTCWEENCPQRV*ILDVAW
Trigger: CCAAGCCACATCCAAGATGCAGACTCTCTGTGGGCA...ATTCTCCTCCCAACAAGTGACTCTGGAATGAGAGAACTTTGTGGTTTCTGCTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR GCA 90 bp ACACACTGCAAGAAGCTTGCTCACGTTTGCATTGGACATAGAAGTACACCTAGAGGTTGTATAGTCAAGTaGTGCCCACAGAGAGTCTGC +
Preference number: 2 (lower is better)
Translates to: THCKKLAHVCIGHRSTPRGCIVK*CPQRVC
Trigger: GCAGACTCTCTGTGGGCAGCACTTGACTATACAACC...TCTAGGTGTACTTCTATGTCCAATGCAAACGTGAGCAAGCTTCTTGCAGTGTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR GCA 90 bp GTCATAGACCAGACCTGGTGCAACCAGCTTTTGTGGCATGGTGTGCAGGCTACTATTTCTCAATCTAGTTaGCCAAAGCAGAAACCACAA +
Preference number: 2 (lower is better)
Translates to: VIDQTWCNQLLWHGVQATISQSS*PKQKPQ
Trigger: TTGTGGTTTCTGCTTTGGGCAACTAGATTGAGAAAT...AGTAGCCTGCACACCATGCCACAAAAGCTGGTTGCACCAGGTCTGGTCTATGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR CCA 90 bp CTGGTGCAACCAGCTTTTGTGGCATGGTGTGCAGGCTACTGGAAGAACATAGCTTGCACATGGAGTATTTaGAAACAAAGGGAGTATGGT +
Preference number: 2 (lower is better)
Translates to: LVQPAFVAWCAGYWKNIACTWSI*KQREYG
Trigger: ACCATACTCCCTTTGTTTCCAAATACTCCATGTGCA...AGCTATGTTCTTCCAGTAGCCTGCACACCATGCCACAAAAGCTGGTTGCACCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR CCA 90 bp AAAGCAGAAACCACAAAGTTCTCTCATTCCAGAGTCACTTGTTGGGAGGAGAATATCTTGGATGTGGCTTaGGCATGCTTCTCTGGCCCA +
Preference number: 2 (lower is better)
Translates to: KAETTKFSHSRVTCWEENILDVA*ACFSGP
Trigger: TGGGCCAGAGAAGCATGCCCAAGCCACATCCAAGAT...ATTCTCCTCCCAACAAGTGACTCTGGAATGAGAGAACTTTGTGGTTTCTGCTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR CCA 90 bp ACACACTGCAAGAAGCTTGCTCACGTTTGCATTGGACATAGAAGTACACCTAGAAGAGAGTCTGCATCTTaGATGTGGCTTGGGCATGCT +
Preference number: 2 (lower is better)
Translates to: THCKKLAHVCIGHRSTPRRESAS*MWLGHA
Trigger: AGCATGCCCAAGCCACATCCAAGATGCAGACTCTCT...TCTAGGTGTACTTCTATGTCCAATGCAAACGTGAGCAAGCTTCTTGCAGTGTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR CCA 90 bp TTGGACATAGAAGTACACCTAGAGGATCCAAGGAAATCCACCCCCACATTACCCTGGTGTGCAGGCTACTaGAAGAACATAGCTCCATTT +
Preference number: 2 (lower is better)
Translates to: LDIEVHLEDPRKSTPTLPWCAGY*KNIAPF
Trigger: AAATGGAGCTATGTTCTTCCAGTAGCCTGCACACCA...GGGTAATGTGGGGGTGGATTTCCTTGGATCCTCTAGGTGTACTTCTATGTCCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR CCA 90 bp ACTGAGCAAGAAATGGCATTCTTTCAAGGTAAAGGTGCCATATTTGCTCCCTTGCCAGCTTTTGTGGCATaGTGTGCAGGCTACTGGAAG +
Preference number: 2 (lower is better)
Translates to: TEQEMAFFQGKGAIFAPLPAFVA*CAGYWK
Trigger: CTTCCAGTAGCCTGCACACCATGCCACAAAAGCTGG...CAAGGGAGCAAATATGGCACCTTTACCTTGAAAGAATGCCATTTCTTGCTCAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR CCA 90 bp TTGGACATAGAAGTACACCTAGAGGATCCAAGGAAATCCACCCCCACATTACCCGAAGTGGGTTCAGACTaGTTTACAAGAAACCACCAG +
Preference number: 2 (lower is better)
Translates to: LDIEVHLEDPRKSTPTLPEVGSD*FTRNHQ
Trigger: CTGGTGGTTTCTTGTAAACCAGTCTGAACCCACTTC...GGGTAATGTGGGGGTGGATTTCCTTGGATCCTCTAGGTGTACTTCTATGTCCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR TCA 90 bp GCACACAGAATGCAATATCATGGGAGAAAAATGCCCACCCATCTTTCTGGTGATAGTCACAGAGTGCTCTaGGCAATGTGTGACAGACAT +
Preference number: 2 (lower is better)
Translates to: AHRMQYHGRKMPTHLSGDSHRVL*AMCDRH
Trigger: ATGTCTGTCACACATTGCTCAGAGCACTCTGTGACT...ATCACCAGAAAGATGGGTGGGCATTTTTCTCCCATGATATTGCATTCTGTGTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR TCA 90 bp AACTATGGGCCACATGTTAAAGCCACAACACGGACTGCATTTGGAGAGAGTGGGTTGTTGGGAGGAGAATaGAGGTTACATAACATTACC +
Preference number: 2 (lower is better)
Translates to: NYGPHVKATTRTAFGESGLLGGE*RLHNIT
Trigger: GGTAATGTTATGTAACCTTCATTCTCCTCCCAACAA...CCCACTCTCTCCAAATGCAGTCCGTGTTGTGGCTTTAACATGTGGCCCATAGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR TCA 90 bp GTAATTAGAGAAAGAAGTGGGTTCAGACTGGTTTACAAGAAACCACCAGAACTGTGTGACGGTAGGAAGTaGTGCCAGAACACATGGGCA +
Preference number: 2 (lower is better)
Translates to: VIRERSGFRLVYKKPPELCDGRK*CQNTWA
Trigger: TGCCCATGTGTTCTGGCATCACTTCCTACCGTCACA...CAGTTCTGGTGGTTTCTTGTAAACCAGTCTGAACCCACTTCTTTCTCTAATTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR TCA 90 bp GCACACAGAATGCAATATCATGGGAGAAAAATGCCCACCCATCTTTCTGGTGATGGCCCAACTGCAGTGTaGTCAGTTTCAATTTCTGTG +
Preference number: 2 (lower is better)
Translates to: AHRMQYHGRKMPTHLSGDGPTAV*SVSISV
Trigger: CACAGAAATTGAAACTGATCACACTGCAGTTGGGCC...ATCACCAGAAAGATGGGTGGGCATTTTTCTCCCATGATATTGCATTCTGTGTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR GCA 90 bp GTAATTAGAGAAAGAAGTGGGTTCAGACTGGTTTACAAGAAACCACCAGAACTGAGGATGGCTAGCTGTTaGCACACTGGGACCATTCTG +
Preference number: 2 (lower is better)
Translates to: VIRERSGFRLVYKKPPELRMASC*HTGTIL
Trigger: CAGAATGGTCCCAGTGTGGCAACAGCTAGCCATCCT...CAGTTCTGGTGGTTTCTTGTAAACCAGTCTGAACCCACTTCTTTCTCTAATTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR CCA 90 bp ACACACTGCAAGAAGCTTGCTCACGTTTGCATTGGACATAGAAGTACACCTAGAGATGTCCCTTTCATTTaGGGGTGCTCTCTCACTTTC +
Preference number: 2 (lower is better)
Translates to: THCKKLAHVCIGHRSTPRDVPFI*GCSLTF
Trigger: GAAAGTGAGAGAGCACCCCCAAATGAAAGGGACATC...TCTAGGTGTACTTCTATGTCCAATGCAAACGTGAGCAAGCTTCTTGCAGTGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR CCA 90 bp GTAATTAGAGAAAGAAGTGGGTTCAGACTGGTTTACAAGAAACCACCAGAACTGCGACAGCTTGAAGGATaGCTAGCTGTTGCCACACTG +
Preference number: 2 (lower is better)
Translates to: VIRERSGFRLVYKKPPELRQLEG*LAVATL
Trigger: CAGTGTGGCAACAGCTAGCCATCCTTCAAGCTGTCG...CAGTTCTGGTGGTTTCTTGTAAACCAGTCTGAACCCACTTCTTTCTCTAATTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR CCA 90 bp GCACACAGAATGCAATATCATGGGAGAAAAATGCCCACCCATCTTTCTGGTGATTGCATTTGGAGAGAGTaGGGATTTCACTGCCAACAC +
Preference number: 2 (lower is better)
Translates to: AHRMQYHGRKMPTHLSGDCIWRE*GFHCQH
Trigger: GTGTTGGCAGTGAAATCCCCACTCTCTCCAAATGCA...ATCACCAGAAAGATGGGTGGGCATTTTTCTCCCATGATATTGCATTCTGTGTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR GCA 90 bp GCACACAGAATGCAATATCATGGGAGAAAAATGCCCACCCATCTTTCTGGTGATGGTAGTATCCTTACATaGAAGGCACACTCCTTAGGA +
Preference number: 2 (lower is better)
Translates to: AHRMQYHGRKMPTHLSGDGSILT*KAHSLG
Trigger: TCCTAAGGAGTGTGCCTTGCATGTAAGGATACTACC...ATCACCAGAAAGATGGGTGGGCATTTTTCTCCCATGATATTGCATTCTGTGTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR GCA 90 bp AAGCTTGCTCACGTTTGCATTGGACATAGAAGTACACCTAGAGGATCCAAGGAAGGTAGTATCCTTACATaGAAGGCACACTCCTTAGGA +
Preference number: 2 (lower is better)
Translates to: KLAHVCIGHRSTPRGSKEGSILT*KAHSLG
Trigger: TCCTAAGGAGTGTGCCTTGCATGTAAGGATACTACC...TTCCTTGGATCCTCTAGGTGTACTTCTATGTCCAATGCAAACGTGAGCAAGCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR GCA 90 bp AACTATGGGCCACATGTTAAAGCCACAACACGGACTGCATTTGGAGAGAGTGGGATTTCTCAATCTAGTTaGCCAAAGCAGAAACCACAA +
Preference number: 2 (lower is better)
Translates to: NYGPHVKATTRTAFGESGISQSS*PKQKPQ
Trigger: TTGTGGTTTCTGCTTTGGGCAACTAGATTGAGAAAT...CCCACTCTCTCCAAATGCAGTCCGTGTTGTGGCTTTAACATGTGGCCCATAGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR CCA 90 bp GCACACAGAATGCAATATCATGGGAGAAAAATGCCCACCCATCTTTCTGGTGATCAACTGATGTTTGTTTaGGGTGTTCATAGGGGTCAC +
Preference number: 2 (lower is better)
Translates to: AHRMQYHGRKMPTHLSGDQLMFV*GVHRGH
Trigger: GTGACCCCTATGAACACCCCAAACAAACATCAGTTG...ATCACCAGAAAGATGGGTGGGCATTTTTCTCCCATGATATTGCATTCTGTGTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR CAA 90 bp AGTAGGCTAACACCTTGGGGCAATTTTCCTTTCATATTGATGCCATaGAACAATACTACATTTCCCTCAGGGATAGAGCTTGGCAAGGAC +
Preference number: 2 (lower is better)
Translates to: SRLTPWGNFPFILMP*NNTTFPSGIELGKD
Trigger: GTCCTTGCCAAGCTCTATCCCTGAGGGAAATGTAGTATTGTTCAATGGCATCAATATGAAAGGAAAATTGCCCCAAGGTGTTAGCCTACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR GCA 90 bp GCACACAGAATGCAATATCATGGGAGAAAAATGCCCACCCATCTTTCTGGTGATAAGCAATGGCCCAACTaGAGTGTGATCAGTTTCAAT +
Preference number: 2 (lower is better)
Translates to: AHRMQYHGRKMPTHLSGDKQWPN*SVISFN
Trigger: ATTGAAACTGATCACACTGCAGTTGGGCCATTGCTT...ATCACCAGAAAGATGGGTGGGCATTTTTCTCCCATGATATTGCATTCTGTGTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR GCA 90 bp ACACACTGCAAGAAGCTTGCTCACGTTTGCATTGGACATAGAAGTACACCTAGAGAGTGGGGATTTCACTaGCAACACCATTTAAAAGCT +
Preference number: 2 (lower is better)
Translates to: THCKKLAHVCIGHRSTPREWGFH*QHHLKA
Trigger: AGCTTTTAAATGGTGTTGGCAGTGAAATCCCCACTC...TCTAGGTGTACTTCTATGTCCAATGCAAACGTGAGCAAGCTTCTTGCAGTGTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR GCA 90 bp GCACACAGAATGCAATATCATGGGAGAAAAATGCCCACCCATCTTTCTGGTGATGAGTGGGGATTTCACTaGCAACACCATTTAAAAGCT +
Preference number: 2 (lower is better)
Translates to: AHRMQYHGRKMPTHLSGDEWGFH*QHHLKA
Trigger: AGCTTTTAAATGGTGTTGGCAGTGAAATCCCCACTC...ATCACCAGAAAGATGGGTGGGCATTTTTCTCCCATGATATTGCATTCTGTGTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR CCA 90 bp ACTGAGCAAGAAATGGCATTCTTTCAAGGTAAAGGTGCCATATTTGCTCCCTTGTGGTGTGCAGGCTACTaGAAGAACATAGCTCCATTT +
Preference number: 2 (lower is better)
Translates to: TEQEMAFFQGKGAIFAPLWCAGY*KNIAPF
Trigger: AAATGGAGCTATGTTCTTCCAGTAGCCTGCACACCA...CAAGGGAGCAAATATGGCACCTTTACCTTGAAAGAATGCCATTTCTTGCTCAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR CCA 90 bp TTCAAGCACAAAATCAAGCACACAGAATGCAATATCATGGGAGAAAAATGCCCATGCAACCAGCTTTTGTaGCATGGTGTGCAGGCTACT +
Preference number: 2 (lower is better)
Translates to: FKHKIKHTECNIMGEKCPCNQLL*HGVQAT
Trigger: AGTAGCCTGCACACCATGCCACAAAAGCTGGTTGCA...TGGGCATTTTTCTCCCATGATATTGCATTCTGTGTGCTTGATTTTGTGCTTGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR TCA 90 bp ACTGAGCAAGAAATGGCATTCTTTCAAGGTAAAGGTGCCATATTTGCTCCCTTGAGTATGACCCAGGAGTaGTGTTTGAAAAATCACCAC +
Preference number: 2 (lower is better)
Translates to: TEQEMAFFQGKGAIFAPLSMTQE*CLKNHH
Trigger: GTGGTGATTTTTCAAACATCACTCCTGGGTCATACT...CAAGGGAGCAAATATGGCACCTTTACCTTGAAAGAATGCCATTTCTTGCTCAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR GCA 90 bp TTGGACATAGAAGTACACCTAGAGGATCCAAGGAAATCCACCCCCACATTACCCGATGAACAAATAATTTaGATGCAAGGAACCCGAAAT +
Preference number: 2 (lower is better)
Translates to: LDIEVHLEDPRKSTPTLPDEQII*MQGTRN
Trigger: ATTTCGGGTTCCTTGCATGCAAATTATTTGTTCATC...GGGTAATGTGGGGGTGGATTTCCTTGGATCCTCTAGGTGTACTTCTATGTCCAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR GCA 90 bp AAGCTTGCTCACGTTTGCATTGGACATAGAAGTACACCTAGAGGATCCAAGGAACAGAGCAACAGAAGTTaGTATGTAGCAACTGTTGTT +
Preference number: 2 (lower is better)
Translates to: KLAHVCIGHRSTPRGSKEQSNRS*YVATVV
Trigger: AACAACAGTTGCTACATAGCAACTTCTGTTGCTCTG...TTCCTTGGATCCTCTAGGTGTACTTCTATGTCCAATGCAAACGTGAGCAAGCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR TCA 90 bp TTCAAGCACAAAATCAAGCACACAGAATGCAATATCATGGGAGAAAAATGCCCAGTAAGTGACCTTCACTaGGTACATACACTTCCTTGC +
Preference number: 2 (lower is better)
Translates to: FKHKIKHTECNIMGEKCPVSDLH*VHTLPC
Trigger: GCAAGGAAGTGTATGTACTCAGTGAAGGTCACTTAC...TGGGCATTTTTCTCCCATGATATTGCATTCTGTGTGCTTGATTTTGTGCTTGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR TCA 90 bp ACTGAGCAAGAAATGGCATTCTTTCAAGGTAAAGGTGCCATATTTGCTCCCTTGTTGTTGGGAGGAGAATaGAGGTTACATAACATTACC +
Preference number: 2 (lower is better)
Translates to: TEQEMAFFQGKGAIFAPLLLGGE*RLHNIT
Trigger: GGTAATGTTATGTAACCTTCATTCTCCTCCCAACAA...CAAGGGAGCAAATATGGCACCTTTACCTTGAAAGAATGCCATTTCTTGCTCAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR CCA 90 bp ACTGAGCAAGAAATGGCATTCTTTCAAGGTAAAGGTGCCATATTTGCTCCCTTGTGCACATGGAGTATTTaGAAACAAAGGGAGTATGGT +
Preference number: 2 (lower is better)
Translates to: TEQEMAFFQGKGAIFAPLCTWSI*KQREYG
Trigger: ACCATACTCCCTTTGTTTCCAAATACTCCATGTGCA...CAAGGGAGCAAATATGGCACCTTTACCTTGAAAGAATGCCATTTCTTGCTCAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR CCA 90 bp TTCAAGCACAAAATCAAGCACACAGAATGCAATATCATGGGAGAAAAATGCCCATCCAGAGTCACTTGTTaGGAGGAGAATGAAGGTTAC +
Preference number: 2 (lower is better)
Translates to: FKHKIKHTECNIMGEKCPSRVTC*EENEGY
Trigger: GTAACCTTCATTCTCCTCCCAACAAGTGACTCTGGA...TGGGCATTTTTCTCCCATGATATTGCATTCTGTGTGCTTGATTTTGTGCTTGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR TCA 90 bp TTCAAGCACAAAATCAAGCACACAGAATGCAATATCATGGGAGAAAAATGCCCAAGTATGACCCAGGAGTaGTGTTTGAAAAATCACCAC +
Preference number: 2 (lower is better)
Translates to: FKHKIKHTECNIMGEKCPSMTQE*CLKNHH
Trigger: GTGGTGATTTTTCAAACATCACTCCTGGGTCATACT...TGGGCATTTTTCTCCCATGATATTGCATTCTGTGTGCTTGATTTTGTGCTTGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR CCA 90 bp AAAGCAGAAACCACAAAGTTCTCTCATTCCAGAGTCACTTGTTGGGAGGAGAATATAGTACTTCCTGCCTaGAAAAATAGCCAATCTATG +
Preference number: 2 (lower is better)
Translates to: KAETTKFSHSRVTCWEENIVLPA*KNSQSM
Trigger: CATAGATTGGCTATTTTTCCAGGCAGGAAGTACTAT...ATTCTCCTCCCAACAAGTGACTCTGGAATGAGAGAACTTTGTGGTTTCTGCTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR TCA 90 bp TTCAAGCACAAAATCAAGCACACAGAATGCAATATCATGGGAGAAAAATGCCCACAATTGATGAGTGACTaGGCAAGAAATGGCATTCTT +
Preference number: 2 (lower is better)
Translates to: FKHKIKHTECNIMGEKCPQLMSD*ARNGIL
Trigger: AAGAATGCCATTTCTTGCTCAGTCACTCATCAATTG...TGGGCATTTTTCTCCCATGATATTGCATTCTGTGTGCTTGATTTTGTGCTTGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR GCA 90 bp TTCAAGCACAAAATCAAGCACACAGAATGCAATATCATGGGAGAAAAATGCCCAGTACATACACTTCCTTaGCAGGTAGTATCCTTACAT +
Preference number: 2 (lower is better)
Translates to: FKHKIKHTECNIMGEKCPVHTLP*QVVSLH
Trigger: ATGTAAGGATACTACCTGGCAAGGAAGTGTATGTAC...TGGGCATTTTTCTCCCATGATATTGCATTCTGTGTGCTTGATTTTGTGCTTGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR CAA 90 bp TTAAATTCAAGTAGGCTAACACCTTGGGGCAATTTTCCTTTCATATaGATGCCATTGAACAATACTACATTTCCCTCAGGGATAGAGCTT +
Preference number: 2 (lower is better)
Translates to: LNSSRLTPWGNFPFI*MPLNNTTFPSGIEL
Trigger: AAGCTCTATCCCTGAGGGAAATGTAGTATTGTTCAATGGCATCAATATGAAAGGAAAATTGCCCCAAGGTGTTAGCCTACTTGAATTTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR GCA 90 bp GTAATTAGAGAAAGAAGTGGGTTCAGACTGGTTTACAAGAAACCACCAGAACTGGATGAACAAATAATTTaGATGCAAGGAACCCGAAAT +
Preference number: 2 (lower is better)
Translates to: VIRERSGFRLVYKKPPELDEQII*MQGTRN
Trigger: ATTTCGGGTTCCTTGCATGCAAATTATTTGTTCATC...CAGTTCTGGTGGTTTCTTGTAAACCAGTCTGAACCCACTTCTTTCTCTAATTAC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR CCA 90 bp TTCAAGCACAAAATCAAGCACACAGAATGCAATATCATGGGAGAAAAATGCCCAATAGTACTTCCTGCCTaGAAAAATAGCCAATCTATG +
Preference number: 2 (lower is better)
Translates to: FKHKIKHTECNIMGEKCPIVLPA*KNSQSM
Trigger: CATAGATTGGCTATTTTTCCAGGCAGGAAGTACTAT...TGGGCATTTTTCTCCCATGATATTGCATTCTGTGTGCTTGATTTTGTGCTTGAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR CAA 90 bp TGTGGTGGCCTGGGGCTTTCGAGAGGCCCTTCTAACCAAGATCAGAGGTCACTGGCCTCAGTGGCCAGGTaGTATAGTCAAGTGCTGCCC +
Preference number: 3 (lower is better)
Translates to: CGGLGLSRGPSNQDQRSLASVAR*YSQVLP
Trigger: GGGCAGCACTTGACTATACAACCTGGCCACTGAGGC...CAGTGACCTCTGATCTTGGTTAGAAGGGCCTCTCGAAAGCCCCAGGCCACCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR CAA 90 bp TGGCCCTACAACATCTGTCAGGGCACAACTGGAAACTCAGGCCACAGCCCTGATGCCTCAGTGGCCAGGTaGTATAGTCAAGTGCTGCCC +
Preference number: 3 (lower is better)
Translates to: WPYNICQGTTGNSGHSPDASVAR*YSQVLP
Trigger: GGGCAGCACTTGACTATACAACCTGGCCACTGAGGC...ATCAGGGCTGTGGCCTGAGTTTCCAGTTGTGCCCTGACAGATGTTGTAGGGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR CCA 72 bp ACAGCCAGGCCTGCTATGGTAGGACCCAAGCAGCTCTaGGCAGGCCAGCAAGATCTCTTTGGTTCTACTTCC +
Preference number: 3 (lower is better)
Translates to: TARPAMVGPKQL*AGQQDLFGSTS
Trigger: GGAAGTAGAACCAAAGAGATCTTGCTGGCCTGCCCAGAGCTGCTTGGGTCCTACCATAGCAGGCCTGGCTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR GCA 72 bp GGCCACAGCCTAGGACTGCAGGCAGGGCAGGTGTCATaGCACTTCAAGCACAAAATCAAGCACACAGAATGC +
Preference number: 3 (lower is better)
Translates to: GHSLGLQAGQVS*HFKHKIKHTEC
Trigger: GCATTCTGTGTGCTTGATTTTGTGCTTGAAGTGGCATGACACCTGCCCTGCCTGCAGTCCTAGGCTGTGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR CCA 72 bp AGCATAGAGAAGGTCTACAGGGCCACTGTGGTGGCCTaGGGCTTTCGAGAGGCCCTTCTAACCAAGATCAGA +
Preference number: 3 (lower is better)
Translates to: SIEKVYRATVVA*GFREALLTKIR
Trigger: TCTGATCTTGGTTAGAAGGGCCTCTCGAAAGCCCCAGGCCACCACAGTGGCCCTGTAGACCTTCTCTATGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR TCA 72 bp TCACTGTCAGTTAGATCTTGCTTCCCAGGATGGGGCTaGAAGCCCTTTCAGGCTATGCCCCATAGAGAGCCC +
Preference number: 3 (lower is better)
Translates to: SLSVRSCFPGWG*KPFQAMPHREP
Trigger: GGGCTCTCTATGGGGCATAGCCTGAAAGGGCTTTCAGCCCCATCCTGGGAAGCAAGATCTAACTGACAGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR TCA 72 bp GTGTCTGGGGTTGGCTTAATTAGTGTGGTCCAGAAGTaGGGTGGCAAGTCACGTGGCATACAACAGGGCCAC +
Preference number: 3 (lower is better)
Translates to: VSGVGLISVVQK*GGKSRGIQQGH
Trigger: GTGGCCCTGTTGTATGCCACGTGACTTGCCACCTCACTTCTGGACCACACTAATTAAGCCAACCCCAGACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR GCA 72 bp TGGGCATGGCTACTCCAAGTCATAGACCAGACCTGGTaGAACCAGCTTTTGTGGCATGGTGTGCAGGCTACT +
Preference number: 3 (lower is better)
Translates to: WAWLLQVIDQTW*NQLLWHGVQAT
Trigger: AGTAGCCTGCACACCATGCCACAAAAGCTGGTTGCACCAGGTCTGGTCTATGACTTGGAGTAGCCATGCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR GCA 72 bp CCTTCTTCACCTGCTGCTTCTTCTCCTGAGGGGGCTTaGTTGAAGCAATGGCCCAACTGCAGTGTGATCAGT +
Preference number: 3 (lower is better)
Translates to: PSSPAASSPEGA*LKQWPNCSVIS
Trigger: ACTGATCACACTGCAGTTGGGCCATTGCTTCAAGCAAGCCCCCTCAGGAGAAGAAGCAGCAGGTGAAGAAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR CAA 90 bp GAACATACAGCCAGGCCTGCTATGGTAGGACCCAAGCAGCTCTGGGCAGGCCAGATGCACATGGAGTATTaGGAAACAAAGGGAGTATGG +
Preference number: 3 (lower is better)
Translates to: EHTARPAMVGPKQLWAGQMHMEY*ETKGVW
Trigger: CCATACTCCCTTTGTTTCCAAATACTCCATGTGCAT...CTGGCCTGCCCAGAGCTGCTTGGGTCCTACCATAGCAGGCCTGGCTGTATGTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR GCA 72 bp TCTAGTGTGCCTCAGTGGCCAGGTTGTATAGTCAAGTaGTGCCCACAGAGAGTCTGCATCTTGGATGTGGCT +
Preference number: 3 (lower is better)
Translates to: SSVPQWPGCIVK*CPQRVCILDVA
Trigger: AGCCACATCCAAGATGCAGACTCTCTGTGGGCAGCACTTGACTATACAACCTGGCCACTGAGGCACACTAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR CAA 90 bp TTGGACATAGAAGTACACCTAGAGGATCCAAGGAAATCCACCCCCACATTACCCCATCTTGGATGTGGCTaGGGCATGCTTCTCTGGCCC +
Preference number: 3 (lower is better)
Translates to: LDIEVHLEDPRKSTPTLPHLGCG*GMLLWP
Trigger: GGGCCAGAGAAGCATGCCCAAGCCACATCCAAGATG...GGGTAATGTGGGGGTGGATTTCCTTGGATCCTCTAGGTGTACTTCTATGTCCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR CAA 90 bp GTCATAGACCAGACCTGGTGCAACCAGCTTTTGTGGCATGGTGTGCAGGCTACTAGATGTCCCTTTCATTaGGGGGTGCTCTCTCACTTT +
Preference number: 3 (lower is better)
Translates to: VIDQTWCNQLLWHGVQATRCPFH*GVLSHF
Trigger: AAAGTGAGAGAGCACCCCCAAATGAAAGGGACATCT...AGTAGCCTGCACACCATGCCACAAAAGCTGGTTGCACCAGGTCTGGTCTATGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR CCA 72 bp ATCCAAAATAGTCAAGGCTCCCGACAGCTTGAAGGATaGCTAGCTGTTGCCACACTGGGACCATTCTGTTGG +
Preference number: 3 (lower is better)
Translates to: IQNSQGSRQLEG*LAVATLGPFCW
Trigger: CCAACAGAATGGTCCCAGTGTGGCAACAGCTAGCCATCCTTCAAGCTGTCGGGAGCCTTGACTATTTTGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR TCA 72 bp CTGTGCCACATGAATGTCAGGTGGCTTCCTGTCCTCTaGTCTTGTTTTATTGCCCTCTTGGGCATGGCTACT +
Preference number: 3 (lower is better)
Translates to: LCHMNVRWLPVL*SCFIALLGMAT
Trigger: AGTAGCCATGCCCAAGAGGGCAATAAAACAAGATCAGAGGACAGGAAGCCACCTGACATTCATGTGGCACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR GCA 72 bp ACCAGACCTGGTGCAACCAGCTTTTGTGGCATGGTGTaGAGGCTACTGGAAGAACATAGCTCCATTTTTCTC +
Preference number: 3 (lower is better)
Translates to: TRPGATSFCGMV*RLLEEHSSIFL
Trigger: GAGAAAAATGGAGCTATGTTCTTCCAGTAGCCTGCACACCATGCCACAAAAGCTGGTTGCACCAGGTCTGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR GCA 72 bp AAGGAAATCCACCCCCACATTACCCAAGGCAAAGGATaGAACTATGGGCCACATGTTAAAGCCACAACACGG +
Preference number: 3 (lower is better)
Translates to: KEIHPHITQGKG*NYGPHVKATTR
Trigger: CCGTGTTGTGGCTTTAACATGTGGCCCATAGTTGCATCCTTTGCCTTGGGTAATGTGGGGGTGGATTTCCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR GCA 72 bp AAAAGGCCAAGTCCATCTTCTTCAATCAGGTCTGACTaGTTGTTGCTGCCTTTGGGTCAGGTGTCTGGGGTT +
Preference number: 3 (lower is better)
Translates to: KRPSPSSSIRSD*LLLPLGQVSGV
Trigger: AACCCCAGACACCTGACCCAAAGGCAGCAACAAGCAGTCAGACCTGATTGAAGAAGATGGACTTGGCCTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR CCA 72 bp CATAGACCAGACCTGGTGCAACCAGCTTTTGTGGCATaGTGTGCAGGCTACTGGAAGAACATAGCTCCATTT +
Preference number: 3 (lower is better)
Translates to: HRPDLVQPAFVA*CAGYWKNIAPF
Trigger: AAATGGAGCTATGTTCTTCCAGTAGCCTGCACACCATGCCACAAAAGCTGGTTGCACCAGGTCTGGTCTATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR CCA 72 bp CTGTCCTCTGATCTTGTTTTATTGCCCTCTTGGGCATaGCTACTCCAAGTCATAGACCAGACCTGGTGCAAC +
Preference number: 3 (lower is better)
Translates to: LSSDLVLLPSWA*LLQVIDQTWCN
Trigger: GTTGCACCAGGTCTGGTCTATGACTTGGAGTAGCCATGCCCAAGAGGGCAATAAAACAAGATCAGAGGACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR CCA 72 bp GCTGCTTCTTCTCCTGAGGGGGCTTGCTTGAAGCAATaGCCCAACTGCAGTGTGATCAGTTTCAATTTCTGT +
Preference number: 3 (lower is better)
Translates to: AASSPEGACLKQ*PNCSVISFNFC
Trigger: ACAGAAATTGAAACTGATCACACTGCAGTTGGGCCATTGCTTCAAGCAAGCCCCCTCAGGAGAAGAAGCAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR CAA 90 bp GCACACAGAATGCAATATCATGGGAGAAAAATGCCCACCCATCTTTCTGGTGATTGGTGCAACCAGCTTTaGTGGCATGGTGTGCAGGCT +
Preference number: 3 (lower is better)
Translates to: AHRMQYHGRKMPTHLSGDWCNQL*WHGVQA
Trigger: AGCCTGCACACCATGCCACAAAAGCTGGTTGCACCA...ATCACCAGAAAGATGGGTGGGCATTTTTCTCCCATGATATTGCATTCTGTGTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR CAA 90 bp TTGGACATAGAAGTACACCTAGAGGATCCAAGGAAATCCACCCCCACATTACCCCAACACGGACTGCATTaGGAGAGAGTGGGGATTTCA +
Preference number: 3 (lower is better)
Translates to: LDIEVHLEDPRKSTPTLPQHGLH*ERVGIS
Trigger: TGAAATCCCCACTCTCTCCAAATGCAGTCCGTGTTG...GGGTAATGTGGGGGTGGATTTCCTTGGATCCTCTAGGTGTACTTCTATGTCCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR TCA 72 bp CTAATATGTTGTTATGGCTTGGGAGGAGACTTCTGGTaGGAGCCTCACACAGGGATTGTCACAGTGCTACCA +
Preference number: 3 (lower is better)
Translates to: LICCYGLGGDFW*EPHTGIVTVLP
Trigger: TGGTAGCACTGTGACAATCCCTGTGTGAGGCTCTCACCAGAAGTCTCCTCCCAAGCCATAACAACATATTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR GCA 72 bp AAACCACCAGAACTGAGCCCACAGAGCAACAGAAGTTaGTATGTAGCAACTGTTGTTGGCTTCTCTCCAGCA +
Preference number: 3 (lower is better)
Translates to: KPPELSPQSNRS*YVATVVGFSPA
Trigger: TGCTGGAGAGAAGCCAACAACAGTTGCTACATAGCAACTTCTGTTGCTCTGTGGGCTCAGTTCTGGTGGTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR CCA 72 bp GTGCAACCAGCTTTTGTGGCATGGTGTGCAGGCTACTaGAAGAACATAGCTCCATTTTTCTCCAGGCCTATA +
Preference number: 3 (lower is better)
Translates to: VQPAFVAWCAGY*KNIAPFFSRPI
Trigger: TATAGGCCTGGAGAAAAATGGAGCTATGTTCTTCCAGTAGCCTGCACACCATGCCACAAAAGCTGGTTGCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR CCA 72 bp ACAGAGCAACAGAAGTTGCTATGTAGCAACTGTTGTTaGCTTCTCTCCAGCATAGAGAAGGTCTACAGGGCC +
Preference number: 3 (lower is better)
Translates to: TEQQKLLCSNCC*LLSSIEKVYRA
Trigger: GGCCCTGTAGACCTTCTCTATGCTGGAGAGAAGCCAACAACAGTTGCTACATAGCAACTTCTGTTGCTCTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR CAA 90 bp AACTATGGGCCACATGTTAAAGCCACAACACGGACTGCATTTGGAGAGAGTGGGTCTGATCTTGTTTTATaGCCCTCTTGGGCATGGCTA +
Preference number: 3 (lower is better)
Translates to: NYGPHVKATTRTAFGESGSDLVL*PSWAWL
Trigger: TAGCCATGCCCAAGAGGGCAATAAAACAAGATCAGA...CCCACTCTCTCCAAATGCAGTCCGTGTTGTGGCTTTAACATGTGGCCCATAGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR CAA 90 bp TTGGACATAGAAGTACACCTAGAGGATCCAAGGAAATCCACCCCCACATTACCCTCTGATCTTGTTTTATaGCCCTCTTGGGCATGGCTA +
Preference number: 3 (lower is better)
Translates to: LDIEVHLEDPRKSTPTLPSDLVL*PSWAWL
Trigger: TAGCCATGCCCAAGAGGGCAATAAAACAAGATCAGA...GGGTAATGTGGGGGTGGATTTCCTTGGATCCTCTAGGTGTACTTCTATGTCCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR TCA 72 bp AAAGTAGATAAGCGCTACAGAACTGTTCATCTCCTTTaGCTGAGCCATAGCCTCTGCAGACACCTGCTATGG +
Preference number: 3 (lower is better)
Translates to: KVDKRYRTVHLL*LSHSLCRHLLW
Trigger: CCATAGCAGGTGTCTGCAGAGGCTATGGCTCAGTCAAAGGAGATGAACAGTTCTGTAGCGCTTATCTACTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR TCA 72 bp GTTTCTGGTGCTAATGAGCTATGGGATGCCAGTAAGTaGCCTTCACTGAGTACATACACTTCCTTGCCAGGT +
Preference number: 3 (lower is better)
Translates to: VSGANELWDASK*PSLSTYTSLPG
Trigger: ACCTGGCAAGGAAGTGTATGTACTCAGTGAAGGTCACTTACTGGCATCCCATAGCTCATTAGCACCAGAAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR TCA 72 bp AAGATCTCTTTGGTTCTACTTCCAGGAGCAACTCCTTaGAATACCTTGTGCGTCCCTCCATGCCTCCAATAC +
Preference number: 3 (lower is better)
Translates to: KISLVLLPGATP*NTLCVPPCLQY
Trigger: GTATTGGAGGCATGGAGGGACGCACAAGGTATTTCAAGGAGTTGCTCCTGGAAGTAGAACCAAAGAGATCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR TCA 72 bp CTGGATTTAGGCCAGGAATTCTGGATGGGTAGAATGTaGGAAAAGCCAGCAATGAGAATCTTCTCGGGAAGC +
Preference number: 3 (lower is better)
Translates to: LDLGQEFWMGRM*EKPAMRIFSGS
Trigger: GCTTCCCGAGAAGATTCTCATTGCTGGCTTTTCTCACATTCTACCCATCCAGAATTCCTGGCCTAAATCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR GCA 72 bp TCTTCTGTGTCTGAGATGTTTCTTAGATGGAGCTGCTaGTCAGCCAGTGAATCCAAAATAGTCAAGGCTCCC +
Preference number: 3 (lower is better)
Translates to: SSVSEMFLRWSC*SASESKIVKAP
Trigger: GGGAGCCTTGACTATTTTGGATTCACTGGCTGAGCAGCAGCTCCATCTAAGAAACATCTCAGACACAGAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR CAA 90 bp GCACACAGAATGCAATATCATGGGAGAAAAATGCCCACCCATCTTTCTGGTGATGCTGCTCTCCATCCCTaGCAAGAATACATGTGGTTA +
Preference number: 3 (lower is better)
Translates to: AHRMQYHGRKMPTHLSGDAALHP*QEYMWL
Trigger: TAACCACATGTATTCTTGCAAGGGATGGAGAGCAGC...ATCACCAGAAAGATGGGTGGGCATTTTTCTCCCATGATATTGCATTCTGTGTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR TCA 72 bp ATGCAAGGAACCCGAAATACTATTGTAGTCATTGCATaGAAGATGAGACTAGCAGTCAGGAGGCTTGAGGGG +
Preference number: 3 (lower is better)
Translates to: MQGTRNTIVVIA*KMRLAVRRLEG
Trigger: CCCCTCAAGCCTCCTGACTGCTAGTCTCATCTTTCATGCAATGACTACAATAGTATTTCGGGTTCCTTGCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR GCA 72 bp AACACGGACTGCATTTGGAGAGAGTGGGGATTTCACTaGCAACACCATTTAAAAGCTGATCTGACAACAGTC +
Preference number: 3 (lower is better)
Translates to: NTDCIWREWGFH*QHHLKADLTTV
Trigger: GACTGTTGTCAGATCAGCTTTTAAATGGTGTTGGCAGTGAAATCCCCACTCTCTCCAAATGCAGTCCGTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR GCA 72 bp ATCAAGCACACAGAATGCAATATCATGGGAGAAAAATaGCCACCCATCTTTCTGGTGATCTGGTGGGGATTG +
Preference number: 3 (lower is better)
Translates to: IKHTECNIMGEK*PPIFLVIWWGL
Trigger: CAATCCCCACCAGATCACCAGAAAGATGGGTGGGCATTTTTCTCCCATGATATTGCATTCTGTGTGCTTGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR TCA 72 bp CTAATGAGCTATGGGATGCCAGTAAGTGACCTTCACTaGGTACATACACTTCCTTGCCAGGTAGTATCCTTA +
Preference number: 3 (lower is better)
Translates to: LMSYGMPVSDLH*VHTLPCQVVSL
Trigger: TAAGGATACTACCTGGCAAGGAAGTGTATGTACTCAGTGAAGGTCACTTACTGGCATCCCATAGCTCATTAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR TCA 72 bp AACTGCAGTGTGATCAGTTTCAATTTCTGTGCCACATaGATGTCAGGTGGCTTCCTGTCCTCTGATCTTGTT +
Preference number: 3 (lower is better)
Translates to: NCSVISFNFCAT*MSGGFLSSDLV
Trigger: AACAAGATCAGAGGACAGGAAGCCACCTGACATTCATGTGGCACAGAAATTGAAACTGATCACACTGCAGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR TCA 72 bp ATATCATGGGAGAAAAATGCCCACCCATCTTTCTGGTaGTCTGGTGGGGATTGTTCTGTAAATCCAAGAGTG +
Preference number: 3 (lower is better)
Translates to: ISWEKNAHPSFW*SGGDCSVNPRV
Trigger: CACTCTTGGATTTACAGAACAATCCCCACCAGATCACCAGAAAGATGGGTGGGCATTTTTCTCCCATGATAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR TCA 72 bp AATTCTGGATGGGTAGAATGTGAGAAAAGCCAGCAATaGGAATCTTCTCGGGAAGCAGCCCAACTGTCAAAT +
Preference number: 3 (lower is better)
Translates to: NSGWVECEKSQQ*ESSREAAQLSN
Trigger: ATTTGACAGTTGGGCTGCTTCCCGAGAAGATTCTCATTGCTGGCTTTTCTCACATTCTACCCATCCAGAATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR CCA 72 bp GGAGAAAAATGCCCACCCATCTTTCTGGTGATCTGGTaGGGATTGTTCTGTAAATCCAAGAGTGGATATGAT +
Preference number: 3 (lower is better)
Translates to: GEKCPPIFLVIW*GLFCKSKSGYD
Trigger: ATCATATCCACTCTTGGATTTACAGAACAATCCCCACCAGATCACCAGAAAGATGGGTGGGCATTTTTCTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR CCA 72 bp ATGGGAGAAAAATGCCCACCCATCTTTCTGGTGATCTaGTGGGGATTGTTCTGTAAATCCAAGAGTGGATAT +
Preference number: 3 (lower is better)
Translates to: MGEKCPPIFLVI*WGLFCKSKSGY
Trigger: ATATCCACTCTTGGATTTACAGAACAATCCCCACCAGATCACCAGAAAGATGGGTGGGCATTTTTCTCCCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR CAA 90 bp GTAATTAGAGAAAGAAGTGGGTTCAGACTGGTTTACAAGAAACCACCAGAACTGAGATGTCCCTTTCATTaGGGGGTGCTCTCTCACTTT +
Preference number: 3 (lower is better)
Translates to: VIRERSGFRLVYKKPPELRCPFH*GVLSHF
Trigger: AAAGTGAGAGAGCACCCCCAAATGAAAGGGACATCT...CAGTTCTGGTGGTTTCTTGTAAACCAGTCTGAACCCACTTCTTTCTCTAATTAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR CAA 90 bp ACACACTGCAAGAAGCTTGCTCACGTTTGCATTGGACATAGAAGTACACCTAGAGCCATATTTGCTCCCTaGTTGATGTTAACATTCCTT +
Preference number: 3 (lower is better)
Translates to: THCKKLAHVCIGHRSTPRAIFAP*LMLTFL
Trigger: AAGGAATGTTAACATCAACAAGGGAGCAAATATGGC...TCTAGGTGTACTTCTATGTCCAATGCAAACGTGAGCAAGCTTCTTGCAGTGTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR GCA 72 bp TCATGCCACTTCAAGCACAAAATCAAGCACACAGAATaGAATATCATGGGAGAAAAATGCCCACCCATCTTT +
Preference number: 3 (lower is better)
Translates to: SCHFKHKIKHTE*NIMGEKCPPIF
Trigger: AAAGATGGGTGGGCATTTTTCTCCCATGATATTGCATTCTGTGTGCTTGATTTTGTGCTTGAAGTGGCATGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR CCA 72 bp GAAACCACAAAGTTCTCTCATTCCAGAGTCACTTGTTaGGAGGAGAATGAAGGTTACATAACATTACCAGTC +
Preference number: 3 (lower is better)
Translates to: ETTKFSHSRVTC*EENEGYITLPV
Trigger: GACTGGTAATGTTATGTAACCTTCATTCTCCTCCCAACAAGTGACTCTGGAATGAGAGAACTTTGTGGTTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR-3UTR CAA 90 bp TTCAAGCACAAAATCAAGCACACAGAATGCAATATCATGGGAGAAAAATGCCCAATGCACATGGAGTATTaGGAAACAAAGGGAGTATGG +
Preference number: 3 (lower is better)
Translates to: FKHKIKHTECNIMGEKCPMHMEY*ETKGVW
Trigger: CCATACTCCCTTTGTTTCCAAATACTCCATGTGCAT...TGGGCATTTTTCTCCCATGATATTGCATTCTGTGTGCTTGATTTTGTGCTTGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR CCA 72 bp ACATCCCTAAAATTAAATTCAAGTAGGCTAACACCTTaGGGCAATTTTCCTTTCATATTGATGCCATTGAAC +
Preference number: 3 (lower is better)
Translates to: TSLKLNSSRLTP*GNFPFILMPLN
Trigger: GTTCAATGGCATCAATATGAAAGGAAAATTGCCCCAAGGTGTTAGCCTACTTGAATTTAATTTTAGGGATGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR TCA 90 bp GAACATACAGCCAGGCCTGCTATGGTAGGACCCAAGCAGCTCTGGGCAGGCCAGGTGCCGAGCGCCTCTTaGACACGCGGCCACACTCAC +
Preference number: 4 (lower is better)
Translates to: EHTARPAMVGPKQLWAGQVPSAS*TRGHTH
Trigger: GTGAGTGTGGCCGCGTGTTCAAGAGGCGCTCGGCAC...CTGGCCTGCCCAGAGCTGCTTGGGTCCTACCATAGCAGGCCTGGCTGTATGTTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR GCA 90 bp GAACATACAGCCAGGCCTGCTATGGTAGGACCCAAGCAGCTCTGGGCAGGCCAGGATGCGCTGGTGCTCTaGCAGGCCGTTGACACCACG +
Preference number: 4 (lower is better)
Translates to: EHTARPAMVGPKQLWAGQDALVL*QAVDTT
Trigger: CGTGGTGTCAACGGCCTGGCAGAGCACCAGCGCATC...CTGGCCTGCCCAGAGCTGCTTGGGTCCTACCATAGCAGGCCTGGCTGTATGTTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR GCA 90 bp GAACATACAGCCAGGCCTGCTATGGTAGGACCCAAGCAGCTCTGGGCAGGCCAGGAGGGCTGGTGTTTCTaGAGTGCCGAGCGCCTCTTG +
Preference number: 4 (lower is better)
Translates to: EHTARPAMVGPKQLWAGQEGWCF*SAERLL
Trigger: CAAGAGGCGCTCGGCACTGCAGAAACACCAGCCCTC...CTGGCCTGCCCAGAGCTGCTTGGGTCCTACCATAGCAGGCCTGGCTGTATGTTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR CCA 90 bp TGTGGTGGCCTGGGGCTTTCGAGAGGCCCTTCTAACCAAGATCAGAGGTCACTGCTGTGGATCCGACGGTaGCGGCTCAGGCCTGAGCTC +
Preference number: 4 (lower is better)
Translates to: CGGLGLSRGPSNQDQRSLLWIRR*RLRPEL
Trigger: GAGCTCAGGCCTGAGCCGCCACCGTCGGATCCACAG...CAGTGACCTCTGATCTTGGTTAGAAGGGCCTCTCGAAAGCCCCAGGCCACCACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR TCA 90 bp GAACATACAGCCAGGCCTGCTATGGTAGGACCCAAGCAGCTCTGGGCAGGCCAGGGTGGGTGTTGGCTTTaGAGGACTGCCCACACTCCT +
Preference number: 4 (lower is better)
Translates to: EHTARPAMVGPKQLWAGQGGCWL*RTAHTP
Trigger: AGGAGTGTGGGCAGTCCTTCAAAGCCAACACCCACC...CTGGCCTGCCCAGAGCTGCTTGGGTCCTACCATAGCAGGCCTGGCTGTATGTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR TCA 90 bp GGGCATGCTTCTCTGGCCCACTCTCATCCAACCTGCCCACCTTGTATGGTCACTGTGGCGGCTCAGGCCTaGGCTCCTCCTAAAGGCCTT +
Preference number: 4 (lower is better)
Translates to: GHASLAHSHPTCPPCMVTVAAQA*APPKGL
Trigger: AAGGCCTTTAGGAGGAGCTCAGGCCTGAGCCGCCAC...AGTGACCATACAAGGTGGGCAGGTTGGATGAGAGTGGGCCAGAGAAGCATGCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR CCA 90 bp TGGCCCTACAACATCTGTCAGGGCACAACTGGAAACTCAGGCCACAGCCCTGATGGTTTGGCGCCGCTGTaGATGCGCTGGTGCTCTGCC +
Preference number: 4 (lower is better)
Translates to: WPYNICQGTTGNSGHSPDGLAPL*MRWCSA
Trigger: GGCAGAGCACCAGCGCATCCACAGCGGCGCCAAACC...ATCAGGGCTGTGGCCTGAGTTTCCAGTTGTGCCCTGACAGATGTTGTAGGGCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR TCA 90 bp TGTGGTGGCCTGGGGCTTTCGAGAGGCCCTTCTAACCAAGATCAGAGGTCACTGGCATCCGCTGGTGCTTaGGAAGTTCCTGGCGGTCCA +
Preference number: 4 (lower is better)
Translates to: CGGLGLSRGPSNQDQRSLASAGA*EVPGGP
Trigger: TGGACCGCCAGGAACTTCTCAAGCACCAGCGGATGC...CAGTGACCTCTGATCTTGGTTAGAAGGGCCTCTCGAAAGCCCCAGGCCACCACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR TCA 90 bp AGTCATAGACCAGACCTGGTGCAACCAGCTTTTGTGGCATGGTGTGCAGGCTACGTGCCGAGCGCCTCTTaGACACGCGGCCACACTCAC +
Preference number: 4 (lower is better)
Translates to: SHRPDLVQPAFVAWCAGYVPSAS*TRGHTH
Trigger: GTGAGTGTGGCCGCGTGTTCAAGAGGCGCTCGGCAC...GTAGCCTGCACACCATGCCACAAAAGCTGGTTGCACCAGGTCTGGTCTATGACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR GCA 90 bp GGGCATGCTTCTCTGGCCCACTCTCATCCAACCTGCCCACCTTGTATGGTCACTGGCAGGTGGCCTGTGTaGATCCGCTGGTGCTTGAGA +
Preference number: 4 (lower is better)
Translates to: GHASLAHSHPTCPPCMVTGRWPV*IRWCLR
Trigger: TCTCAAGCACCAGCGGATGCACACAGGCCACCTGCC...AGTGACCATACAAGGTGGGCAGGTTGGATGAGAGTGGGCCAGAGAAGCATGCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR GCA 90 bp TGGCCCTACAACATCTGTCAGGGCACAACTGGAAACTCAGGCCACAGCCCTGATGATGCGCTGGTGCTCTaGCAGGCCGTTGACACCACG +
Preference number: 4 (lower is better)
Translates to: WPYNICQGTTGNSGHSPDDALVL*QAVDTT
Trigger: CGTGGTGTCAACGGCCTGGCAGAGCACCAGCGCATC...ATCAGGGCTGTGGCCTGAGTTTCCAGTTGTGCCCTGACAGATGTTGTAGGGCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR CCA 90 bp GAACATACAGCCAGGCCTGCTATGGTAGGACCCAAGCAGCTCTGGGCAGGCCAGGGTTTCAGTCCGCTGTaGATGCGCCTGTGCTTGATG +
Preference number: 4 (lower is better)
Translates to: EHTARPAMVGPKQLWAGQGFSPL*MRLCLM
Trigger: CATCAAGCACAGGCGCATCCACAGCGGACTGAAACC...CTGGCCTGCCCAGAGCTGCTTGGGTCCTACCATAGCAGGCCTGGCTGTATGTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR TCA 90 bp GTCATAGACCAGACCTGGTGCAACCAGCTTTTGTGGCATGGTGTGCAGGCTACTGTGGCGGCTCAGGCCTaGGCTCCTCCTAAAGGCCTT +
Preference number: 4 (lower is better)
Translates to: VIDQTWCNQLLWHGVQATVAAQA*APPKGL
Trigger: AAGGCCTTTAGGAGGAGCTCAGGCCTGAGCCGCCAC...AGTAGCCTGCACACCATGCCACAAAAGCTGGTTGCACCAGGTCTGGTCTATGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR GCA 90 bp AACTATGGGCCACATGTTAAAGCCACAACACGGACTGCATTTGGAGAGAGTGGGTGGCGCCGCTGTGGATaGGCTGGTGCTCTGCCAGGC +
Preference number: 4 (lower is better)
Translates to: NYGPHVKATTRTAFGESGWRRCG*AGALPG
Trigger: GCCTGGCAGAGCACCAGCGCATCCACAGCGGCGCCA...CCCACTCTCTCCAAATGCAGTCCGTGTTGTGGCTTTAACATGTGGCCCATAGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR CCA 90 bp GAACATACAGCCAGGCCTGCTATGGTAGGACCCAAGCAGCTCTGGGCAGGCCAGTGCTTGAGAAGTTCCTaGCGGTCCAGGAAATCCCTG +
Preference number: 4 (lower is better)
Translates to: EHTARPAMVGPKQLWAGQCLRSS*RSRKSL
Trigger: CAGGGATTTCCTGGACCGCCAGGAACTTCTCAAGCA...CTGGCCTGCCCAGAGCTGCTTGGGTCCTACCATAGCAGGCCTGGCTGTATGTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR TCA 90 bp GAACATACAGCCAGGCCTGCTATGGTAGGACCCAAGCAGCTCTGGGCAGGCCAGTCAGGGTGCTTAGTGTaGTCTGTGTTGAGGGTTGGA +
Preference number: 4 (lower is better)
Translates to: EHTARPAMVGPKQLWAGQSGCLV*SVLRVG
Trigger: TCCAACCCTCAACACAGATCACACTAAGCACCCTGA...CTGGCCTGCCCAGAGCTGCTTGGGTCCTACCATAGCAGGCCTGGCTGTATGTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033731.4
CDS-3UTR GCA 90 bp TGGCCCTACAACATCTGTCAGGGCACAACTGGAAACTCAGGCCACAGCCCTGATGTGTGCATCCGCTGGTaGTTGAGAAGTTCCTGGCGG +
Preference number: 4 (lower is better)
Translates to: WPYNICQGTTGNSGHSPDVCIRW*LRSSWR
Trigger: CCGCCAGGAACTTCTCAAGCACCAGCGGATGCACAC...ATCAGGGCTGTGGCCTGAGTTTCCAGTTGTGCCCTGACAGATGTTGTAGGGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR GCA 90 bp TGGCCCTACAACATCTGTCAGGGCACAACTGGAAACTCAGGCCACAGCCCTGATCACCACGGAAGGACTTaGCGCAGTCATCGCAGTCGA +
Preference number: 4 (lower is better)
Translates to: WPYNICQGTTGNSGHSPDHHGRT*RSHRSR
Trigger: TCGACTGCGATGACTGCGGCAAGTCCTTCCGTGGTG...ATCAGGGCTGTGGCCTGAGTTTCCAGTTGTGCCCTGACAGATGTTGTAGGGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR GCA 90 bp TGGCCCTACAACATCTGTCAGGGCACAACTGGAAACTCAGGCCACAGCCCTGATGTGTGGATCCTCCGGTaGTTGGTGAGCTCTGAGCTC +
Preference number: 4 (lower is better)
Translates to: WPYNICQGTTGNSGHSPDVWILR*LVSSEL
Trigger: GAGCTCAGAGCTCACCAAGCACCGGAGGATCCACAC...ATCAGGGCTGTGGCCTGAGTTTCCAGTTGTGCCCTGACAGATGTTGTAGGGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR CCA 90 bp TGGCCCTACAACATCTGTCAGGGCACAACTGGAAACTCAGGCCACAGCCCTGATTATGGGCAGATTTTGTaGGCTCCCTCCCCTTCCCCC +
Preference number: 4 (lower is better)
Translates to: WPYNICQGTTGNSGHSPDYGQIL*APSPSP
Trigger: GGGGGAAGGGGAGGGAGCCCACAAAATCTGCCCATA...ATCAGGGCTGTGGCCTGAGTTTCCAGTTGTGCCCTGACAGATGTTGTAGGGCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR CCA 90 bp TGGCCCTACAACATCTGTCAGGGCACAACTGGAAACTCAGGCCACAGCCCTGATGCGGCCACAGCTGCGTaGCTGTTCCTGTGCTCATTA +
Preference number: 4 (lower is better)
Translates to: WPYNICQGTTGNSGHSPDAATAA*LFLCSL
Trigger: TAATGAGCACAGGAACAGCCACGCAGCTGTGGCCGC...ATCAGGGCTGTGGCCTGAGTTTCCAGTTGTGCCCTGACAGATGTTGTAGGGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR CCA 90 bp GGGCATGCTTCTCTGGCCCACTCTCATCCAACCTGCCCACCTTGTATGGTCACTCCTGTGTGCATCCGCTaGTGCTTGAGAAGTTCCTGG +
Preference number: 4 (lower is better)
Translates to: GHASLAHSHPTCPPCMVTPVCIR*CLRSSW
Trigger: CCAGGAACTTCTCAAGCACCAGCGGATGCACACAGG...AGTGACCATACAAGGTGGGCAGGTTGGATGAGAGTGGGCCAGAGAAGCATGCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR TCA 90 bp AACTATGGGCCACATGTTAAAGCCACAACACGGACTGCATTTGGAGAGAGTGGGGCTCTGCCAGGCCGTTaGCACCACGGAAGGACTTGC +
Preference number: 4 (lower is better)
Translates to: NYGPHVKATTRTAFGESGALPGR*HHGRTC
Trigger: GCAAGTCCTTCCGTGGTGTCAACGGCCTGGCAGAGC...CCCACTCTCTCCAAATGCAGTCCGTGTTGTGGCTTTAACATGTGGCCCATAGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR GCA 90 bp CTGGTGCAACCAGCTTTTGTGGCATGGTGTGCAGGCTACTGGAAGAACATAGCTCCCTGCTGCACGCCTTaGACGCAAAGGGCTTTTCCG +
Preference number: 4 (lower is better)
Translates to: LVQPAFVAWCAGYWKNIAPCCTP*TQRAFP
Trigger: CGGAAAAGCCCTTTGCGTGCAAGGCGTGCAGCAGGG...AGCTATGTTCTTCCAGTAGCCTGCACACCATGCCACAAAAGCTGGTTGCACCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR GCA 90 bp GTCATAGACCAGACCTGGTGCAACCAGCTTTTGTGGCATGGTGTGCAGGCTACTCTATGGATGCGTGTGTaGTCCAGCAGGCTGGAGCTC +
Preference number: 4 (lower is better)
Translates to: VIDQTWCNQLLWHGVQATLWMRV*SSRLEL
Trigger: GAGCTCCAGCCTGCTGGAGCACACACGCATCCATAG...AGTAGCCTGCACACCATGCCACAAAAGCTGGTTGCACCAGGTCTGGTCTATGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR GCA 90 bp TGGCCCTACAACATCTGTCAGGGCACAACTGGAAACTCAGGCCACAGCCCTGATCTGTGGATGCGCCTGTaGTTGATGAGGTCAGAAGGC +
Preference number: 4 (lower is better)
Translates to: WPYNICQGTTGNSGHSPDLWMRL*LMRSEG
Trigger: GCCTTCTGACCTCATCAAGCACAGGCGCATCCACAG...ATCAGGGCTGTGGCCTGAGTTTCCAGTTGTGCCCTGACAGATGTTGTAGGGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR CCA 90 bp GGGCATGCTTCTCTGGCCCACTCTCATCCAACCTGCCCACCTTGTATGGTCACTGCCATCTCTTGCAGCTaGGCTTCTTCACCCATCTTC +
Preference number: 4 (lower is better)
Translates to: GHASLAHSHPTCPPCMVTAISCS*ASSPIF
Trigger: GAAGATGGGTGAAGAAGCCCAGCTGCAAGAGATGGC...AGTGACCATACAAGGTGGGCAGGTTGGATGAGAGTGGGCCAGAGAAGCATGCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033731.4
CDS-3UTR GCA 90 bp TTGGACATAGAAGTACACCTAGAGGATCCAAGGAAATCCACCCCCACATTACCCCTGAGCGGCCACAGCTaGGTGGCTGTTCCTGTGCTC +
Preference number: 4 (lower is better)
Translates to: LDIEVHLEDPRKSTPTLPLSGHS*VAVPVL
Trigger: GAGCACAGGAACAGCCACGCAGCTGTGGCCGCTCAG...GGGTAATGTGGGGGTGGATTTCCTTGGATCCTCTAGGTGTACTTCTATGTCCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR GCA 90 bp ACACACTGCAAGAAGCTTGCTCACGTTTGCATTGGACATAGAAGTACACCTAGATGGCGCCGCTGTGGATaGGCTGGTGCTCTGCCAGGC +
Preference number: 4 (lower is better)
Translates to: THCKKLAHVCIGHRSTPRWRRCG*AGALPG
Trigger: GCCTGGCAGAGCACCAGCGCATCCACAGCGGCGCCA...TCTAGGTGTACTTCTATGTCCAATGCAAACGTGAGCAAGCTTCTTGCAGTGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR GCA 90 bp GTCATAGACCAGACCTGGTGCAACCAGCTTTTGTGGCATGGTGTGCAGGCTACTCTGGTGTTTCTGCAGTaGCGAGCGCCTCTTGAACAC +
Preference number: 4 (lower is better)
Translates to: VIDQTWCNQLLWHGVQATLVFLQ*RAPLEH
Trigger: GTGTTCAAGAGGCGCTCGGCACTGCAGAAACACCAG...AGTAGCCTGCACACCATGCCACAAAAGCTGGTTGCACCAGGTCTGGTCTATGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR GCA 90 bp AGTCATAGACCAGACCTGGTGCAACCAGCTTTTGTGGCATGGTGTGCAGGCTACCTGGTGTTTCTGCAGTaGCGAGCGCCTCTTGAACAC +
Preference number: 4 (lower is better)
Translates to: SHRPDLVQPAFVAWCAGYLVFLQ*RAPLEH
Trigger: GTGTTCAAGAGGCGCTCGGCACTGCAGAAACACCAG...GTAGCCTGCACACCATGCCACAAAAGCTGGTTGCACCAGGTCTGGTCTATGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR GCA 90 bp AACTATGGGCCACATGTTAAAGCCACAACACGGACTGCATTTGGAGAGAGTGGGGAGGGCTGGTGTTTCTaGAGTGCCGAGCGCCTCTTG +
Preference number: 4 (lower is better)
Translates to: NYGPHVKATTRTAFGESGEGWCF*SAERLL
Trigger: CAAGAGGCGCTCGGCACTGCAGAAACACCAGCCCTC...CCCACTCTCTCCAAATGCAGTCCGTGTTGTGGCTTTAACATGTGGCCCATAGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR CCA 90 bp TTGGACATAGAAGTACACCTAGAGGATCCAAGGAAATCCACCCCCACATTACCCCCTGGGGCTCCGTCTTaGGGAAGGGCAAGACCTTGG +
Preference number: 4 (lower is better)
Translates to: LDIEVHLEDPRKSTPTLPPGAPS*GRARPW
Trigger: CCAAGGTCTTGCCCTTCCCCAAGACGGAGCCCCAGG...GGGTAATGTGGGGGTGGATTTCCTTGGATCCTCTAGGTGTACTTCTATGTCCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000033731.4
CDS-3UTR TCA 90 bp TGTGGTGGCCTGGGGCTTTCGAGAGGCCCTTCTAACCAAGATCAGAGGTCACTGCGGTACAATATCAAATaGCACCAAATCCTGGGCCTC +
Preference number: 4 (lower is better)
Translates to: CGGLGLSRGPSNQDQRSLRYNIK*HQILGL
Trigger: GAGGCCCAGGATTTGGTGTCATTTGATATTGTACCG...CAGTGACCTCTGATCTTGGTTAGAAGGGCCTCTCGAAAGCCCCAGGCCACCACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033731.4
CDS-3UTR TCA 90 bp AACTATGGGCCACATGTTAAAGCCACAACACGGACTGCATTTGGAGAGAGTGGGGTGCTTGGTGAGCTCTaGGCTCCTCCGGAACAGCTT +
Preference number: 4 (lower is better)
Translates to: NYGPHVKATTRTAFGESGVLGEL*APPEQL
Trigger: AAGCTGTTCCGGAGGAGCTCAGAGCTCACCAAGCAC...CCCACTCTCTCCAAATGCAGTCCGTGTTGTGGCTTTAACATGTGGCCCATAGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR GCA 90 bp TTGGACATAGAAGTACACCTAGAGGATCCAAGGAAATCCACCCCCACATTACCCCCCTGCTGCACGCCTTaGACGCAAAGGGCTTTTCCG +
Preference number: 4 (lower is better)
Translates to: LDIEVHLEDPRKSTPTLPPCCTP*TQRAFP
Trigger: CGGAAAAGCCCTTTGCGTGCAAGGCGTGCAGCAGGG...GGGTAATGTGGGGGTGGATTTCCTTGGATCCTCTAGGTGTACTTCTATGTCCAA
53% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR CCA 90 bp CTGGTGCAACCAGCTTTTGTGGCATGGTGTGCAGGCTACTGGAAGAACATAGCTTGGAGGTCACAGCCCTaGAATATGCCAGTGCCTGCT +
Preference number: 4 (lower is better)
Translates to: LVQPAFVAWCAGYWKNIAWRSQP*NMPVPA
Trigger: AGCAGGCACTGGCATATTCCAGGGCTGTGACCTCCA...AGCTATGTTCTTCCAGTAGCCTGCACACCATGCCACAAAAGCTGGTTGCACCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033731.4
CDS-3UTR CCA 90 bp GCACACAGAATGCAATATCATGGGAGAAAAATGCCCACCCATCTTTCTGGTGATCTGTGGATCCGACGGTaGCGGCTCAGGCCTGAGCTC +
Preference number: 4 (lower is better)
Translates to: AHRMQYHGRKMPTHLSGDLWIRR*RLRPEL
Trigger: GAGCTCAGGCCTGAGCCGCCACCGTCGGATCCACAG...ATCACCAGAAAGATGGGTGGGCATTTTTCTCCCATGATATTGCATTCTGTGTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR TCA 90 bp AGTCATAGACCAGACCTGGTGCAACCAGCTTTTGTGGCATGGTGTGCAGGCTACTGTCCTTGTGACAGGTaGGATACCAAAGCAGGACTC +
Preference number: 4 (lower is better)
Translates to: SHRPDLVQPAFVAWCAGYCPCDR*DTKAGL
Trigger: GAGTCCTGCTTTGGTATCTCACCTGTCACAAGGACA...GTAGCCTGCACACCATGCCACAAAAGCTGGTTGCACCAGGTCTGGTCTATGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033731.4
CDS-3UTR GCA 90 bp TTGGACATAGAAGTACACCTAGAGGATCCAAGGAAATCCACCCCCACATTACCCGTGGACGCCATCTCTTaGAGCTGGGCTTCTTCACCC +
Preference number: 4 (lower is better)
Translates to: LDIEVHLEDPRKSTPTLPVDAIS*SWASSP
Trigger: GGGTGAAGAAGCCCAGCTGCAAGAGATGGCGTCCAC...GGGTAATGTGGGGGTGGATTTCCTTGGATCCTCTAGGTGTACTTCTATGTCCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR GCA 90 bp ACACACTGCAAGAAGCTTGCTCACGTTTGCATTGGACATAGAAGTACACCTAGACTGAGCGGCCACAGCTaGGTGGCTGTTCCTGTGCTC +
Preference number: 4 (lower is better)
Translates to: THCKKLAHVCIGHRSTPRLSGHS*VAVPVL
Trigger: GAGCACAGGAACAGCCACGCAGCTGTGGCCGCTCAG...TCTAGGTGTACTTCTATGTCCAATGCAAACGTGAGCAAGCTTCTTGCAGTGTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR GCA 90 bp CTGGTGCAACCAGCTTTTGTGGCATGGTGTGCAGGCTACTGGAAGAACATAGCTGCCTCCCTCTCCATTTaGTCCCTCTTTTCCAAGGCA +
Preference number: 4 (lower is better)
Translates to: LVQPAFVAWCAGYWKNIAASLSI*SLFSKA
Trigger: TGCCTTGGAAAAGAGGGAGCAAATGGAGAGGGAGGC...AGCTATGTTCTTCCAGTAGCCTGCACACCATGCCACAAAAGCTGGTTGCACCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR GCA 90 bp TTGGACATAGAAGTACACCTAGAGGATCCAAGGAAATCCACCCCCACATTACCCGTGTGGATCCTCCGGTaGTTGGTGAGCTCTGAGCTC +
Preference number: 4 (lower is better)
Translates to: LDIEVHLEDPRKSTPTLPVWILR*LVSSEL
Trigger: GAGCTCAGAGCTCACCAAGCACCGGAGGATCCACAC...GGGTAATGTGGGGGTGGATTTCCTTGGATCCTCTAGGTGTACTTCTATGTCCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR CCA 90 bp GCACACAGAATGCAATATCATGGGAGAAAAATGCCCACCCATCTTTCTGGTGATGGGACTGCCAGGACCTaGTTTCCTGGGGCTCCGTCT +
Preference number: 4 (lower is better)
Translates to: AHRMQYHGRKMPTHLSGDGTART*FPGAPS
Trigger: AGACGGAGCCCCAGGAAACCAGGTCCTGGCAGTCCC...ATCACCAGAAAGATGGGTGGGCATTTTTCTCCCATGATATTGCATTCTGTGTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033731.4
CDS-3UTR CCA 90 bp TTGGACATAGAAGTACACCTAGAGGATCCAAGGAAATCCACCCCCACATTACCCGCGGCCACAGCTGCGTaGCTGTTCCTGTGCTCATTA +
Preference number: 4 (lower is better)
Translates to: LDIEVHLEDPRKSTPTLPAATAA*LFLCSL
Trigger: TAATGAGCACAGGAACAGCCACGCAGCTGTGGCCGC...GGGTAATGTGGGGGTGGATTTCCTTGGATCCTCTAGGTGTACTTCTATGTCCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR CCA 90 bp CTGGTGCAACCAGCTTTTGTGGCATGGTGTGCAGGCTACTGGAAGAACATAGCTTGCTTGAGAAGTTCCTaGCGGTCCAGGAAATCCCTG +
Preference number: 4 (lower is better)
Translates to: LVQPAFVAWCAGYWKNIACLRSS*RSRKSL
Trigger: CAGGGATTTCCTGGACCGCCAGGAACTTCTCAAGCA...AGCTATGTTCTTCCAGTAGCCTGCACACCATGCCACAAAAGCTGGTTGCACCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR CCA 90 bp AACTATGGGCCACATGTTAAAGCCACAACACGGACTGCATTTGGAGAGAGTGGGCCTGTGTGCATCCGCTaGTGCTTGAGAAGTTCCTGG +
Preference number: 4 (lower is better)
Translates to: NYGPHVKATTRTAFGESGPVCIR*CLRSSW
Trigger: CCAGGAACTTCTCAAGCACCAGCGGATGCACACAGG...CCCACTCTCTCCAAATGCAGTCCGTGTTGTGGCTTTAACATGTGGCCCATAGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR CCA 90 bp AAAGCAGAAACCACAAAGTTCTCTCATTCCAGAGTCACTTGTTGGGAGGAGAATGGTTTGGCGCCGCTGTaGATGCGCTGGTGCTCTGCC +
Preference number: 4 (lower is better)
Translates to: KAETTKFSHSRVTCWEENGLAPL*MRWCSA
Trigger: GGCAGAGCACCAGCGCATCCACAGCGGCGCCAAACC...ATTCTCCTCCCAACAAGTGACTCTGGAATGAGAGAACTTTGTGGTTTCTGCTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR TCA 90 bp AAGCTTGCTCACGTTTGCATTGGACATAGAAGTACACCTAGAGGATCCAAGGAAGCATCCGCTGGTGCTTaGGAAGTTCCTGGCGGTCCA +
Preference number: 4 (lower is better)
Translates to: KLAHVCIGHRSTPRGSKEASAGA*EVPGGP
Trigger: TGGACCGCCAGGAACTTCTCAAGCACCAGCGGATGC...TTCCTTGGATCCTCTAGGTGTACTTCTATGTCCAATGCAAACGTGAGCAAGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR TCA 90 bp AAAGCAGAAACCACAAAGTTCTCTCATTCCAGAGTCACTTGTTGGGAGGAGAATGCTCTGCCAGGCCGTTaGCACCACGGAAGGACTTGC +
Preference number: 4 (lower is better)
Translates to: KAETTKFSHSRVTCWEENALPGR*HHGRTC
Trigger: GCAAGTCCTTCCGTGGTGTCAACGGCCTGGCAGAGC...ATTCTCCTCCCAACAAGTGACTCTGGAATGAGAGAACTTTGTGGTTTCTGCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR GCA 90 bp TTGGACATAGAAGTACACCTAGAGGATCCAAGGAAATCCACCCCCACATTACCCCCTGGAATATGCCAGTaGCTGCTGCTCCGGGTTCAA +
Preference number: 4 (lower is better)
Translates to: LDIEVHLEDPRKSTPTLPPGICQ*LLLRVQ
Trigger: TTGAACCCGGAGCAGCAGGCACTGGCATATTCCAGG...GGGTAATGTGGGGGTGGATTTCCTTGGATCCTCTAGGTGTACTTCTATGTCCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000033731.4
CDS-3UTR GCA 90 bp AAGCTTGCTCACGTTTGCATTGGACATAGAAGTACACCTAGAGGATCCAAGGAACACAGCCCTGGAATATaGCAGTGCCTGCTGCTCCGG +
Preference number: 4 (lower is better)
Translates to: KLAHVCIGHRSTPRGSKEHSPGI*QCLLLR
Trigger: CCGGAGCAGCAGGCACTGGCATATTCCAGGGCTGTG...TTCCTTGGATCCTCTAGGTGTACTTCTATGTCCAATGCAAACGTGAGCAAGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033731.4
CDS-3UTR GCA 90 bp AGTCATAGACCAGACCTGGTGCAACCAGCTTTTGTGGCATGGTGTGCAGGCTACGCGTGGCTGTTCCTGTaGTCATTAAATTCTGACACC +
Preference number: 4 (lower is better)
Translates to: SHRPDLVQPAFVAWCAGYAWLFL*SLNSDT
Trigger: GGTGTCAGAATTTAATGAGCACAGGAACAGCCACGC...GTAGCCTGCACACCATGCCACAAAAGCTGGTTGCACCAGGTCTGGTCTATGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR GCA 90 bp GCACACAGAATGCAATATCATGGGAGAAAAATGCCCACCCATCTTTCTGGTGATCTGTGGATGCGCTGGTaGTCTGCCAGGCCGTTGACA +
Preference number: 4 (lower is better)
Translates to: AHRMQYHGRKMPTHLSGDLWMRW*SARPLT
Trigger: TGTCAACGGCCTGGCAGAGCACCAGCGCATCCACAG...ATCACCAGAAAGATGGGTGGGCATTTTTCTCCCATGATATTGCATTCTGTGTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR CCA 90 bp TGTGGTGGCCTGGGGCTTTCGAGAGGCCCTTCTAACCAAGATCAGAGGTCACTGATCTGTGTTGAGGGTTaGATCAGATACCAACAGAAC +
Preference number: 4 (lower is better)
Translates to: CGGLGLSRGPSNQDQRSLICVEG*IRYQQN
Trigger: GTTCTGTTGGTATCTGATCCAACCCTCAACACAGAT...CAGTGACCTCTGATCTTGGTTAGAAGGGCCTCTCGAAAGCCCCAGGCCACCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033731.4
CDS-3UTR TCA 90 bp AAGCTTGCTCACGTTTGCATTGGACATAGAAGTACACCTAGAGGATCCAAGGAAGTGCTTGGTGAGCTCTaGGCTCCTCCGGAACAGCTT +
Preference number: 4 (lower is better)
Translates to: KLAHVCIGHRSTPRGSKEVLGEL*APPEQL
Trigger: AAGCTGTTCCGGAGGAGCTCAGAGCTCACCAAGCAC...TTCCTTGGATCCTCTAGGTGTACTTCTATGTCCAATGCAAACGTGAGCAAGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR TCA 90 bp ACTGAGCAAGAAATGGCATTCTTTCAAGGTAAAGGTGCCATATTTGCTCCCTTGTGCACTCACAGCGCTTaGCCCCACTGTGGATCCGAC +
Preference number: 4 (lower is better)
Translates to: TEQEMAFFQGKGAIFAPLCTHSA*PHCGSD
Trigger: GTCGGATCCACAGTGGGGTCAAGCGCTGTGAGTGCA...CAAGGGAGCAAATATGGCACCTTTACCTTGAAAGAATGCCATTTCTTGCTCAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR GCA 90 bp TTGGACATAGAAGTACACCTAGAGGATCCAAGGAAATCCACCCCCACATTACCCGCCTCCCTCTCCATTTaGTCCCTCTTTTCCAAGGCA +
Preference number: 4 (lower is better)
Translates to: LDIEVHLEDPRKSTPTLPASLSI*SLFSKA
Trigger: TGCCTTGGAAAAGAGGGAGCAAATGGAGAGGGAGGC...GGGTAATGTGGGGGTGGATTTCCTTGGATCCTCTAGGTGTACTTCTATGTCCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR GCA 90 bp ACACACTGCAAGAAGCTTGCTCACGTTTGCATTGGACATAGAAGTACACCTAGACCAGGAAATCCCTGCTaGACGCCTTGCACGCAAAGG +
Preference number: 4 (lower is better)
Translates to: THCKKLAHVCIGHRSTPRPGNPC*TPCTQR
Trigger: CCTTTGCGTGCAAGGCGTGCAGCAGGGATTTCCTGG...TCTAGGTGTACTTCTATGTCCAATGCAAACGTGAGCAAGCTTCTTGCAGTGTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR GCA 90 bp AAGCTTGCTCACGTTTGCATTGGACATAGAAGTACACCTAGAGGATCCAAGGAACCAGGAAATCCCTGCTaGACGCCTTGCACGCAAAGG +
Preference number: 4 (lower is better)
Translates to: KLAHVCIGHRSTPRGSKEPGNPC*TPCTQR
Trigger: CCTTTGCGTGCAAGGCGTGCAGCAGGGATTTCCTGG...TTCCTTGGATCCTCTAGGTGTACTTCTATGTCCAATGCAAACGTGAGCAAGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR GCA 90 bp AAGCTTGCTCACGTTTGCATTGGACATAGAAGTACACCTAGAGGATCCAAGGAAGGTCCAGGAAATCCCTaGTGCACGCCTTGCACGCAA +
Preference number: 4 (lower is better)
Translates to: KLAHVCIGHRSTPRGSKEGPGNP*CTPCTQ
Trigger: TTGCGTGCAAGGCGTGCAGCAGGGATTTCCTGGACC...TTCCTTGGATCCTCTAGGTGTACTTCTATGTCCAATGCAAACGTGAGCAAGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR GCA 90 bp ACACACTGCAAGAAGCTTGCTCACGTTTGCATTGGACATAGAAGTACACCTAGAGGTCCAGGAAATCCCTaGTGCACGCCTTGCACGCAA +
Preference number: 4 (lower is better)
Translates to: THCKKLAHVCIGHRSTPRGPGNP*CTPCTQ
Trigger: TTGCGTGCAAGGCGTGCAGCAGGGATTTCCTGGACC...TCTAGGTGTACTTCTATGTCCAATGCAAACGTGAGCAAGCTTCTTGCAGTGTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR GCA 90 bp ACACACTGCAAGAAGCTTGCTCACGTTTGCATTGGACATAGAAGTACACCTAGAGTGTGCATCCGCTGGTaGTTGAGAAGTTCCTGGCGG +
Preference number: 4 (lower is better)
Translates to: THCKKLAHVCIGHRSTPRVCIRW*LRSSWR
Trigger: CCGCCAGGAACTTCTCAAGCACCAGCGGATGCACAC...TCTAGGTGTACTTCTATGTCCAATGCAAACGTGAGCAAGCTTCTTGCAGTGTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR GCA 90 bp AAGCTTGCTCACGTTTGCATTGGACATAGAAGTACACCTAGAGGATCCAAGGAACTATGGATGCGTGTGTaGTCCAGCAGGCTGGAGCTC +
Preference number: 4 (lower is better)
Translates to: KLAHVCIGHRSTPRGSKELWMRV*SSRLEL
Trigger: GAGCTCCAGCCTGCTGGAGCACACACGCATCCATAG...TTCCTTGGATCCTCTAGGTGTACTTCTATGTCCAATGCAAACGTGAGCAAGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR CCA 90 bp AAAGCAGAAACCACAAAGTTCTCTCATTCCAGAGTCACTTGTTGGGAGGAGAATCAGGACCTGGTTTCCTaGGGCTCCGTCTTGGGGAAG +
Preference number: 4 (lower is better)
Translates to: KAETTKFSHSRVTCWEENQDLVS*GSVLGK
Trigger: CTTCCCCAAGACGGAGCCCCAGGAAACCAGGTCCTG...ATTCTCCTCCCAACAAGTGACTCTGGAATGAGAGAACTTTGTGGTTTCTGCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033731.4
CDS-3UTR CCA 90 bp TTGGACATAGAAGTACACCTAGAGGATCCAAGGAAATCCACCCCCACATTACCCTCTTCACCCATCTTCTaGTGGGAAGTCGCAGAGGTG +
Preference number: 4 (lower is better)
Translates to: LDIEVHLEDPRKSTPTLPSSPIF*WEVAEV
Trigger: CACCTCTGCGACTTCCCACCAGAAGATGGGTGAAGA...GGGTAATGTGGGGGTGGATTTCCTTGGATCCTCTAGGTGTACTTCTATGTCCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033731.4
3UTR CAA 72 bp GAAACCACCAGAACTGAGCCCACAGAGCAACAGAAGTaGCTATGTAGCAACTGTTGTTGGCTTCTCTCCAGC +
Preference number: 4 (lower is better)
Translates to: ETTRTEPTEQQK*LCSNCCWLLSS
Trigger: GCTGGAGAGAAGCCAACAACAGTTGCTACATAGCAACTTCTGTTGCTCTGTGGGCTCAGTTCTGGTGGTTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR TCA 90 bp AAAGCAGAAACCACAAAGTTCTCTCATTCCAGAGTCACTTGTTGGGAGGAGAATGGTGGGTGTTGGCTTTaGAGGACTGCCCACACTCCT +
Preference number: 4 (lower is better)
Translates to: KAETTKFSHSRVTCWEENGGCWL*RTAHTP
Trigger: AGGAGTGTGGGCAGTCCTTCAAAGCCAACACCCACC...ATTCTCCTCCCAACAAGTGACTCTGGAATGAGAGAACTTTGTGGTTTCTGCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR TCA 90 bp GTAATTAGAGAAAGAAGTGGGTTCAGACTGGTTTACAAGAAACCACCAGAACTGTGCACTCACAGCGCTTaGCCCCACTGTGGATCCGAC +
Preference number: 4 (lower is better)
Translates to: VIRERSGFRLVYKKPPELCTHSA*PHCGSD
Trigger: GTCGGATCCACAGTGGGGTCAAGCGCTGTGAGTGCA...CAGTTCTGGTGGTTTCTTGTAAACCAGTCTGAACCCACTTCTTTCTCTAATTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR GCA 90 bp AACTATGGGCCACATGTTAAAGCCACAACACGGACTGCATTTGGAGAGAGTGGGTTGGCTTTGAAGGACTaGCCACACTCCTCACAATCA +
Preference number: 4 (lower is better)
Translates to: NYGPHVKATTRTAFGESGLALKD*PHSSQS
Trigger: TGATTGTGAGGAGTGTGGGCAGTCCTTCAAAGCCAA...CCCACTCTCTCCAAATGCAGTCCGTGTTGTGGCTTTAACATGTGGCCCATAGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR CAA 72 bp ATGTCAGGTGGCTTCCTGTCCTCTGATCTTGTTTTATaGCCCTCTTGGGCATGGCTACTCCAAGTCATAGAC +
Preference number: 4 (lower is better)
Translates to: MSGGFLSSDLVL*PSWAWLLQVID
Trigger: GTCTATGACTTGGAGTAGCCATGCCCAAGAGGGCAATAAAACAAGATCAGAGGACAGGAAGCCACCTGACAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR GCA 90 bp ACTGAGCAAGAAATGGCATTCTTTCAAGGTAAAGGTGCCATATTTGCTCCCTTGCATCTCAAGAGGGACTaGCAGGACCTGGTTTCCTGG +
Preference number: 4 (lower is better)
Translates to: TEQEMAFFQGKGAIFAPLHLKRD*QDLVSW
Trigger: CCAGGAAACCAGGTCCTGGCAGTCCCTCTTGAGATG...CAAGGGAGCAAATATGGCACCTTTACCTTGAAAGAATGCCATTTCTTGCTCAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033731.4
CDS-3UTR GCA 90 bp TTCAAGCACAAAATCAAGCACACAGAATGCAATATCATGGGAGAAAAATGCCCAGGCAGGTGGCCTGTGTaGATCCGCTGGTGCTTGAGA +
Preference number: 4 (lower is better)
Translates to: FKHKIKHTECNIMGEKCPGRWPV*IRWCLR
Trigger: TCTCAAGCACCAGCGGATGCACACAGGCCACCTGCC...TGGGCATTTTTCTCCCATGATATTGCATTCTGTGTGCTTGATTTTGTGCTTGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR GCA 90 bp TTCAAGCACAAAATCAAGCACACAGAATGCAATATCATGGGAGAAAAATGCCCACTGTGGATGCGCTGGTaGTCTGCCAGGCCGTTGACA +
Preference number: 4 (lower is better)
Translates to: FKHKIKHTECNIMGEKCPLWMRW*SARPLT
Trigger: TGTCAACGGCCTGGCAGAGCACCAGCGCATCCACAG...TGGGCATTTTTCTCCCATGATATTGCATTCTGTGTGCTTGATTTTGTGCTTGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR CCA 90 bp GTAATTAGAGAAAGAAGTGGGTTCAGACTGGTTTACAAGAAACCACCAGAACTGTATGGGCAGATTTTGTaGGCTCCCTCCCCTTCCCCC +
Preference number: 4 (lower is better)
Translates to: VIRERSGFRLVYKKPPELYGQIL*APSPSP
Trigger: GGGGGAAGGGGAGGGAGCCCACAAAATCTGCCCATA...CAGTTCTGGTGGTTTCTTGTAAACCAGTCTGAACCCACTTCTTTCTCTAATTAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR TCA 90 bp TTCAAGCACAAAATCAAGCACACAGAATGCAATATCATGGGAGAAAAATGCCCAGCTCCGGGTTCAAACTaGGACCCAGCCACTCCTGTT +
Preference number: 4 (lower is better)
Translates to: FKHKIKHTECNIMGEKCPAPGSN*DPATPV
Trigger: AACAGGAGTGGCTGGGTCTCAGTTTGAACCCGGAGC...TGGGCATTTTTCTCCCATGATATTGCATTCTGTGTGCTTGATTTTGTGCTTGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033731.4
CDS-3UTR GCA 90 bp TTCAAGCACAAAATCAAGCACACAGAATGCAATATCATGGGAGAAAAATGCCCACACCACGGAAGGACTTaGCGCAGTCATCGCAGTCGA +
Preference number: 4 (lower is better)
Translates to: FKHKIKHTECNIMGEKCPHHGRT*RSHRSR
Trigger: TCGACTGCGATGACTGCGGCAAGTCCTTCCGTGGTG...TGGGCATTTTTCTCCCATGATATTGCATTCTGTGTGCTTGATTTTGTGCTTGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR CCA 90 bp GCACACAGAATGCAATATCATGGGAGAAAAATGCCCACCCATCTTTCTGGTGATCAACAGGAACTCCAATaGAGGTCACAGCCCTGGAAT +
Preference number: 4 (lower is better)
Translates to: AHRMQYHGRKMPTHLSGDQQELQ*RSQPWN
Trigger: ATTCCAGGGCTGTGACCTCCATTGGAGTTCCTGTTG...ATCACCAGAAAGATGGGTGGGCATTTTTCTCCCATGATATTGCATTCTGTGTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033731.4
CDS-3UTR CCA 90 bp GTAATTAGAGAAAGAAGTGGGTTCAGACTGGTTTACAAGAAACCACCAGAACTGGGTTTCAGTCCGCTGTaGATGCGCCTGTGCTTGATG +
Preference number: 4 (lower is better)
Translates to: VIRERSGFRLVYKKPPELGFSPL*MRLCLM
Trigger: CATCAAGCACAGGCGCATCCACAGCGGACTGAAACC...CAGTTCTGGTGGTTTCTTGTAAACCAGTCTGAACCCACTTCTTTCTCTAATTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR GCA 90 bp TTCAAGCACAAAATCAAGCACACAGAATGCAATATCATGGGAGAAAAATGCCCACTGTGGATGCGCCTGTaGTTGATGAGGTCAGAAGGC +
Preference number: 4 (lower is better)
Translates to: FKHKIKHTECNIMGEKCPLWMRL*LMRSEG
Trigger: GCCTTCTGACCTCATCAAGCACAGGCGCATCCACAG...TGGGCATTTTTCTCCCATGATATTGCATTCTGTGTGCTTGATTTTGTGCTTGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR TCA 90 bp AAAGCAGAAACCACAAAGTTCTCTCATTCCAGAGTCACTTGTTGGGAGGAGAATCAGAACTTGTCCTTGTaGCAGGTGAGATACCAAAGC +
Preference number: 4 (lower is better)
Translates to: KAETTKFSHSRVTCWEENQNLSL*QVRYQS
Trigger: GCTTTGGTATCTCACCTGTCACAAGGACAAGTTCTG...ATTCTCCTCCCAACAAGTGACTCTGGAATGAGAGAACTTTGTGGTTTCTGCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033731.4
3UTR CAA 72 bp ACACGAATGCATAGACAAGCACACACTGCAAGAAGCTaGCTCACGTTTGCATTGGACATAGAAGTACACCTA +
Preference number: 4 (lower is better)
Translates to: TRMHRQAHTARS*LTFALDIEVHL
Trigger: TAGGTGTACTTCTATGTCCAATGCAAACGTGAGCAAGCTTCTTGCAGTGTGTGCTTGTCTATGCATTCGTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR CAA 72 bp AAATGCCCACCCATCTTTCTGGTGATCTGGTGGGGATaGTTCTGTAAATCCAAGAGTGGATATGATACAACC +
Preference number: 4 (lower is better)
Translates to: KCPPIFLVIWWG*FCKSKSGYDTT
Trigger: GGTTGTATCATATCCACTCTTGGATTTACAGAACAATCCCCACCAGATCACCAGAAAGATGGGTGGGCATTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR CAA 72 bp AGTAGGCTAACACCTTGGGGCAATTTTCCTTTCATATaGATGCCATTGAACAATACTACATTTCCCTCAGGG +
Preference number: 4 (lower is better)
Translates to: SRLTPWGNFPFI*MPLNNTTFPSG
Trigger: CCCTGAGGGAAATGTAGTATTGTTCAATGGCATCAATATGAAAGGAAAATTGCCCCAAGGTGTTAGCCTACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR CAA 72 bp TCTCATCCAACCTGCCCACCTTGTATGGTCACTTTTTaGGTGGGCAGTCGATTTAACTTTTCTTCTGTAAAT +
Preference number: 4 (lower is better)
Translates to: SHPTCPPCMVTF*VGSRFNFSSVN
Trigger: ATTTACAGAAGAAAAGTTAAATCGACTGCCCACCAAAAAAGTGACCATACAAGGTGGGCAGGTTGGATGAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR CAA 72 bp GCCAGAATATTAGGTAATCCAGCTGCTCTCCATCCCTaGCAAGAATACATGTGGTTAGAAAGAAAAGTGCAA +
Preference number: 4 (lower is better)
Translates to: ARILGNPAALHP*QEYMWLERKVQ
Trigger: TTGCACTTTTCTTTCTAACCACATGTATTCTTGCAAGGGATGGAGAGCAGCTGGATTACCTAATATTCTGGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
3UTR CAA 72 bp ACACCTTGGGGCAATTTTCCTTTCATATTGATGCCATaGAACAATACTACATTTCCCTCAGGGATAGAGCTT +
Preference number: 4 (lower is better)
Translates to: TPWGNFPFILMP*NNTTFPSGIEL
Trigger: AAGCTCTATCCCTGAGGGAAATGTAGTATTGTTCAATGGCATCAATATGAAAGGAAAATTGCCCCAAGGTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS GCA 90 bp GCGCTGGGGTCATTGGCCCTCGGGGAACTCGTGGACGCCATCTCTTaGAGCTGGGCTTCTTCACCCATCTTCTGGTGGGAAGTCGCAGAG +
Preference number: 5 (lower is better)
Translates to: ALGSLALGELVDAIS*SWASSPIFWWEVAE
Trigger: CTCTGCGACTTCCCACCAGAAGATGGGTGAAGAAGCCCAGCTGCAAGAGATGGCGTCCACGAGTTCCCCGAGGGCCAATGACCCCAGCGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033731.4
CDS CCA 90 bp GGGTCATTGGCCCTCGGGGAACTCGTGGACGCCATCTCTTGCAGCTaGGCTTCTTCACCCATCTTCTGGTGGGAAGTCGCAGAGGTGCTT +
Preference number: 5 (lower is better)
Translates to: GSLALGELVDAISCS*ASSPIFWWEVAEVL
Trigger: AAGCACCTCTGCGACTTCCCACCAGAAGATGGGTGAAGAAGCCCAGCTGCAAGAGATGGCGTCCACGAGTTCCCCGAGGGCCAATGACCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033731.4
CDS-3UTR CAA 90 bp GGGCATGCTTCTCTGGCCCACTCTCATCCAACCTGCCCACCTTGTATGGTCACTCGTGGACGCCATCTCTaGCAGCTGGGCTTCTTCACC +
Preference number: 5 (lower is better)
Translates to: GHASLAHSHPTCPPCMVTRGRHL*QLGFFT
Trigger: GGTGAAGAAGCCCAGCTGCAAGAGATGGCGTCCACG...AGTGACCATACAAGGTGGGCAGGTTGGATGAGAGTGGGCCAGAGAAGCATGCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR CAA 90 bp GAACATACAGCCAGGCCTGCTATGGTAGGACCCAAGCAGCTCTGGGCAGGCCAGCGAAAGAGGTGGGTGTaGGCTTTGAAGGACTGCCCA +
Preference number: 5 (lower is better)
Translates to: EHTARPAMVGPKQLWAGQRKRWV*ALKDCP
Trigger: TGGGCAGTCCTTCAAAGCCAACACCCACCTCTTTCG...CTGGCCTGCCCAGAGCTGCTTGGGTCCTACCATAGCAGGCCTGGCTGTATGTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR CAA 90 bp GGGCATGCTTCTCTGGCCCACTCTCATCCAACCTGCCCACCTTGTATGGTCACTTGCTCTGCCAGGCCGTaGACACCACGGAAGGACTTG +
Preference number: 5 (lower is better)
Translates to: GHASLAHSHPTCPPCMVTCSARP*TPRKDL
Trigger: CAAGTCCTTCCGTGGTGTCAACGGCCTGGCAGAGCA...AGTGACCATACAAGGTGGGCAGGTTGGATGAGAGTGGGCCAGAGAAGCATGCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR CAA 90 bp GGGCATGCTTCTCTGGCCCACTCTCATCCAACCTGCCCACCTTGTATGGTCACTCTGCACTCACAGCGCTaGACCCCACTGTGGATCCGA +
Preference number: 5 (lower is better)
Translates to: GHASLAHSHPTCPPCMVTLHSQR*TPLWIR
Trigger: TCGGATCCACAGTGGGGTCAAGCGCTGTGAGTGCAG...AGTGACCATACAAGGTGGGCAGGTTGGATGAGAGTGGGCCAGAGAAGCATGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS GCA 90 bp GGAACTCCAATGGAGGTCACAGCCCTGGAATATGCCAGTGCCTGCTaGTCCGGGTTCAAACTGAGACCCAGCCACTCCTGTTCTGTGAGG +
Preference number: 5 (lower is better)
Translates to: GTPMEVTALEYASAC*SGFKLRPSHSCSVR
Trigger: CCTCACAGAACAGGAGTGGCTGGGTCTCAGTTTGAACCCGGAGCAGCAGGCACTGGCATATTCCAGGGCTGTGACCTCCATTGGAGTTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033731.4
CDS-3UTR CAA 90 bp TGGCCCTACAACATCTGTCAGGGCACAACTGGAAACTCAGGCCACAGCCCTGATCGTGGACGCCATCTCTaGCAGCTGGGCTTCTTCACC +
Preference number: 5 (lower is better)
Translates to: WPYNICQGTTGNSGHSPDRGRHL*QLGFFT
Trigger: GGTGAAGAAGCCCAGCTGCAAGAGATGGCGTCCACG...ATCAGGGCTGTGGCCTGAGTTTCCAGTTGTGCCCTGACAGATGTTGTAGGGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR CAA 90 bp TGTGGTGGCCTGGGGCTTTCGAGAGGCCCTTCTAACCAAGATCAGAGGTCACTGAGGTGGGTGTTGGCTTaGAAGGACTGCCCACACTCC +
Preference number: 5 (lower is better)
Translates to: CGGLGLSRGPSNQDQRSLRWVLA*KDCPHS
Trigger: GGAGTGTGGGCAGTCCTTCAAAGCCAACACCCACCT...CAGTGACCTCTGATCTTGGTTAGAAGGGCCTCTCGAAAGCCCCAGGCCACCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS GCA 90 bp ACAGGAACTCCAATGGAGGTCACAGCCCTGGAATATGCCAGTGCCTaGTGCTCCGGGTTCAAACTGAGACCCAGCCACTCCTGTTCTGTG +
Preference number: 5 (lower is better)
Translates to: TGTPMEVTALEYASA*CSGFKLRPSHSCSV
Trigger: CACAGAACAGGAGTGGCTGGGTCTCAGTTTGAACCCGGAGCAGCAGGCACTGGCATATTCCAGGGCTGTGACCTCCATTGGAGTTCCTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033731.4
CDS GCA 90 bp AGGACTCACAACAGGAACTCCAATGGAGGTCACAGCCCTGGAATATaGCAGTGCCTGCTGCTCCGGGTTCAAACTGAGACCCAGCCACTC +
Preference number: 5 (lower is better)
Translates to: RTHNRNSNGGHSPGI*QCLLLRVQTETQPL
Trigger: GAGTGGCTGGGTCTCAGTTTGAACCCGGAGCAGCAGGCACTGGCATATTCCAGGGCTGTGACCTCCATTGGAGTTCCTGTTGTGAGTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033731.4
CDS-3UTR CAA 90 bp TGGCCCTACAACATCTGTCAGGGCACAACTGGAAACTCAGGCCACAGCCCTGATGAGTCCCCATTCTGTTaGACCTCAGCGCTGGGGTCA +
Preference number: 5 (lower is better)
Translates to: WPYNICQGTTGNSGHSPDESPFC*TSALGS
Trigger: TGACCCCAGCGCTGAGGTCAAACAGAATGGGGACTC...ATCAGGGCTGTGGCCTGAGTTTCCAGTTGTGCCCTGACAGATGTTGTAGGGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR CAA 90 bp TGTGGTGGCCTGGGGCTTTCGAGAGGCCCTTCTAACCAAGATCAGAGGTCACTGTTCTATGGGCAGATTTaGTGGGCTCCCTCCCCTTCC +
Preference number: 5 (lower is better)
Translates to: CGGLGLSRGPSNQDQRSLFYGQI*WAPSPS
Trigger: GGAAGGGGAGGGAGCCCACAAAATCTGCCCATAGAA...CAGTGACCTCTGATCTTGGTTAGAAGGGCCTCTCGAAAGCCCCAGGCCACCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR CAA 90 bp GTCATAGACCAGACCTGGTGCAACCAGCTTTTGTGGCATGGTGTGCAGGCTACTTCCCTGCTGCACGCCTaGCACGCAAAGGGCTTTTCC +
Preference number: 5 (lower is better)
Translates to: VIDQTWCNQLLWHGVQATSLLHA*HAKGFS
Trigger: GGAAAAGCCCTTTGCGTGCAAGGCGTGCAGCAGGGA...AGTAGCCTGCACACCATGCCACAAAAGCTGGTTGCACCAGGTCTGGTCTATGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR CAA 90 bp GTCATAGACCAGACCTGGTGCAACCAGCTTTTGTGGCATGGTGTGCAGGCTACTAGGTGGGTGTTGGCTTaGAAGGACTGCCCACACTCC +
Preference number: 5 (lower is better)
Translates to: VIDQTWCNQLLWHGVQATRWVLA*KDCPHS
Trigger: GGAGTGTGGGCAGTCCTTCAAAGCCAACACCCACCT...AGTAGCCTGCACACCATGCCACAAAAGCTGGTTGCACCAGGTCTGGTCTATGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR CAA 90 bp TGGCCCTACAACATCTGTCAGGGCACAACTGGAAACTCAGGCCACAGCCCTGATCGAAAGAGGTGGGTGTaGGCTTTGAAGGACTGCCCA +
Preference number: 5 (lower is better)
Translates to: WPYNICQGTTGNSGHSPDRKRWV*ALKDCP
Trigger: TGGGCAGTCCTTCAAAGCCAACACCCACCTCTTTCG...ATCAGGGCTGTGGCCTGAGTTTCCAGTTGTGCCCTGACAGATGTTGTAGGGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR CAA 90 bp AACTATGGGCCACATGTTAAAGCCACAACACGGACTGCATTTGGAGAGAGTGGGTGCTCTGCCAGGCCGTaGACACCACGGAAGGACTTG +
Preference number: 5 (lower is better)
Translates to: NYGPHVKATTRTAFGESGCSARP*TPRKDL
Trigger: CAAGTCCTTCCGTGGTGTCAACGGCCTGGCAGAGCA...CCCACTCTCTCCAAATGCAGTCCGTGTTGTGGCTTTAACATGTGGCCCATAGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR CAA 90 bp AACTATGGGCCACATGTTAAAGCCACAACACGGACTGCATTTGGAGAGAGTGGGTGGATCCTCCGGTGCTaGGTGAGCTCTGAGCTCCTC +
Preference number: 5 (lower is better)
Translates to: NYGPHVKATTRTAFGESGWILRC*VSSELL
Trigger: GAGGAGCTCAGAGCTCACCAAGCACCGGAGGATCCA...CCCACTCTCTCCAAATGCAGTCCGTGTTGTGGCTTTAACATGTGGCCCATAGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR CAA 90 bp TTGGACATAGAAGTACACCTAGAGGATCCAAGGAAATCCACCCCCACATTACCCAGTGCCGAGCGCCTCTaGAACACGCGGCCACACTCA +
Preference number: 5 (lower is better)
Translates to: LDIEVHLEDPRKSTPTLPSAERL*NTRPHS
Trigger: TGAGTGTGGCCGCGTGTTCAAGAGGCGCTCGGCACT...GGGTAATGTGGGGGTGGATTTCCTTGGATCCTCTAGGTGTACTTCTATGTCCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR CAA 90 bp AACTATGGGCCACATGTTAAAGCCACAACACGGACTGCATTTGGAGAGAGTGGGCTCCTCCTAAAGGCCTaGCCACACTTGTCGCACTCA +
Preference number: 5 (lower is better)
Translates to: NYGPHVKATTRTAFGESGLLLKA*PHLSHS
Trigger: TGAGTGCGACAAGTGTGGCAAGGCCTTTAGGAGGAG...CCCACTCTCTCCAAATGCAGTCCGTGTTGTGGCTTTAACATGTGGCCCATAGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR CAA 90 bp GCACACAGAATGCAATATCATGGGAGAAAAATGCCCACCCATCTTTCTGGTGATAGTGCCGAGCGCCTCTaGAACACGCGGCCACACTCA +
Preference number: 5 (lower is better)
Translates to: AHRMQYHGRKMPTHLSGDSAERL*NTRPHS
Trigger: TGAGTGTGGCCGCGTGTTCAAGAGGCGCTCGGCACT...ATCACCAGAAAGATGGGTGGGCATTTTTCTCCCATGATATTGCATTCTGTGTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR CAA 90 bp AAGCTTGCTCACGTTTGCATTGGACATAGAAGTACACCTAGAGGATCCAAGGAATGGATCCTCCGGTGCTaGGTGAGCTCTGAGCTCCTC +
Preference number: 5 (lower is better)
Translates to: KLAHVCIGHRSTPRGSKEWILRC*VSSELL
Trigger: GAGGAGCTCAGAGCTCACCAAGCACCGGAGGATCCA...TTCCTTGGATCCTCTAGGTGTACTTCTATGTCCAATGCAAACGTGAGCAAGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR CAA 90 bp AAGCTTGCTCACGTTTGCATTGGACATAGAAGTACACCTAGAGGATCCAAGGAACTGCACTCACAGCGCTaGACCCCACTGTGGATCCGA +
Preference number: 5 (lower is better)
Translates to: KLAHVCIGHRSTPRGSKELHSQR*TPLWIR
Trigger: TCGGATCCACAGTGGGGTCAAGCGCTGTGAGTGCAG...TTCCTTGGATCCTCTAGGTGTACTTCTATGTCCAATGCAAACGTGAGCAAGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR CAA 90 bp ACACACTGCAAGAAGCTTGCTCACGTTTGCATTGGACATAGAAGTACACCTAGAGAGTCCCCATTCTGTTaGACCTCAGCGCTGGGGTCA +
Preference number: 5 (lower is better)
Translates to: THCKKLAHVCIGHRSTPRESPFC*TSALGS
Trigger: TGACCCCAGCGCTGAGGTCAAACAGAATGGGGACTC...TCTAGGTGTACTTCTATGTCCAATGCAAACGTGAGCAAGCTTCTTGCAGTGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR CAA 90 bp AAAGCAGAAACCACAAAGTTCTCTCATTCCAGAGTCACTTGTTGGGAGGAGAATTCCCTGCTGCACGCCTaGCACGCAAAGGGCTTTTCC +
Preference number: 5 (lower is better)
Translates to: KAETTKFSHSRVTCWEENSLLHA*HAKGFS
Trigger: GGAAAAGCCCTTTGCGTGCAAGGCGTGCAGCAGGGA...ATTCTCCTCCCAACAAGTGACTCTGGAATGAGAGAACTTTGTGGTTTCTGCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR CAA 90 bp ACACACTGCAAGAAGCTTGCTCACGTTTGCATTGGACATAGAAGTACACCTAGATGGATGCGCCTGTGCTaGATGAGGTCAGAAGGCCCT +
Preference number: 5 (lower is better)
Translates to: THCKKLAHVCIGHRSTPRWMRLC*MRSEGP
Trigger: AGGGCCTTCTGACCTCATCAAGCACAGGCGCATCCA...TCTAGGTGTACTTCTATGTCCAATGCAAACGTGAGCAAGCTTCTTGCAGTGTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS-3UTR CAA 90 bp GCACACAGAATGCAATATCATGGGAGAAAAATGCCCACCCATCTTTCTGGTGATCTCCTCCTAAAGGCCTaGCCACACTTGTCGCACTCA +
Preference number: 5 (lower is better)
Translates to: AHRMQYHGRKMPTHLSGDLLLKA*PHLSHS
Trigger: TGAGTGCGACAAGTGTGGCAAGGCCTTTAGGAGGAG...ATCACCAGAAAGATGGGTGGGCATTTTTCTCCCATGATATTGCATTCTGTGTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS TCA 90 bp TTGAGGGTTGGATCAGATACCAACAGAACTTGTCCTTGTGACAGGTaGGATACCAAAGCAGGACTCACAACAGGAACTCCAATGGAGGTC +
Preference number: 5 (lower is better)
Translates to: LRVGSDTNRTCPCDR*DTKAGLTTGTPMEV
Trigger: GACCTCCATTGGAGTTCCTGTTGTGAGTCCTGCTTTGGTATCTCACCTGTCACAAGGACAAGTTCTGTTGGTATCTGATCCAACCCTCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033731.4
CDS-3UTR CAA 90 bp TTCAAGCACAAAATCAAGCACACAGAATGCAATATCATGGGAGAAAAATGCCCATGGATGCGCCTGTGCTaGATGAGGTCAGAAGGCCCT +
Preference number: 5 (lower is better)
Translates to: FKHKIKHTECNIMGEKCPWMRLC*MRSEGP
Trigger: AGGGCCTTCTGACCTCATCAAGCACAGGCGCATCCA...TGGGCATTTTTCTCCCATGATATTGCATTCTGTGTGCTTGATTTTGTGCTTGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS TCA 90 bp ATCTGTGTTGAGGGTTGGATCAGATACCAACAGAACTTGTCCTTGTaGCAGGTGAGATACCAAAGCAGGACTCACAACAGGAACTCCAAT +
Preference number: 5 (lower is better)
Translates to: ICVEGWIRYQQNLSL*QVRYQSRTHNRNSN
Trigger: ATTGGAGTTCCTGTTGTGAGTCCTGCTTTGGTATCTCACCTGTCACAAGGACAAGTTCTGTTGGTATCTGATCCAACCCTCAACACAGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033731.4
CDS CCA 72 bp CCTCAGCGCTGGGGTCATTGGCCCTCGGGGAACTCGTaGACGCCATCTCTTGCAGCTGGGCTTCTTCACCCA +
Preference number: 6 (lower is better)
Translates to: PQRWGHWPSGNS*TPSLAAGLLHP
Trigger: TGGGTGAAGAAGCCCAGCTGCAAGAGATGGCGTCCACGAGTTCCCCGAGGGCCAATGACCCCAGCGCTGAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS CCA 72 bp CACTCACAGCGCTTGACCCCACTGTGGATCCGACGGTaGCGGCTCAGGCCTGAGCTCCTCCTAAAGGCCTTG +
Preference number: 6 (lower is better)
Translates to: HSQRLTPLWIRR*RLRPELLLKAL
Trigger: CAAGGCCTTTAGGAGGAGCTCAGGCCTGAGCCGCCACCGTCGGATCCACAGTGGGGTCAAGCGCTGTGAGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS CAA 72 bp TGGTGCTCTGCCAGGCCGTTGACACCACGGAAGGACTaGCCGCAGTCATCGCAGTCGAAGGGCAGGTGGCCT +
Preference number: 6 (lower is better)
Translates to: WCSARPLTPRKD*PQSSQSKGRWP
Trigger: AGGCCACCTGCCCTTCGACTGCGATGACTGCGGCAAGTCCTTCCGTGGTGTCAACGGCCTGGCAGAGCACCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS CCA 72 bp TGGGCCTCCAGCATCTCAAGAGGGACTGCCAGGACCTaGTTTCCTGGGGCTCCGTCTTGGGGAAGGGCAAGA +
Preference number: 6 (lower is better)
Translates to: WASSISRGTART*FPGAPSWGRAR
Trigger: TCTTGCCCTTCCCCAAGACGGAGCCCCAGGAAACCAGGTCCTGGCAGTCCCTCTTGAGATGCTGGAGGCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033731.4
CDS CAA 90 bp AGCGCTGGGGTCATTGGCCCTCGGGGAACTCGTGGACGCCATCTCTaGCAGCTGGGCTTCTTCACCCATCTTCTGGTGGGAAGTCGCAGA +
Preference number: 6 (lower is better)
Translates to: SAGVIGPRGTRGRHL*QLGFFTHLLVGSRR
Trigger: TCTGCGACTTCCCACCAGAAGATGGGTGAAGAAGCCCAGCTGCAAGAGATGGCGTCCACGAGTTCCCCGAGGGCCAATGACCCCAGCGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033731.4
CDS CCA 72 bp GCCCTCGGGGAACTCGTGGACGCCATCTCTTGCAGCTaGGCTTCTTCACCCATCTTCTGGTGGGAAGTCGCA +
Preference number: 6 (lower is better)
Translates to: ALGELVDAISCS*ASSPIFWWEVA
Trigger: TGCGACTTCCCACCAGAAGATGGGTGAAGAAGCCCAGCTGCAAGAGATGGCGTCCACGAGTTCCCCGAGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033731.4
CDS CAA 72 bp GTCATTGGCCCTCGGGGAACTCGTGGACGCCATCTCTaGCAGCTGGGCTTCTTCACCCATCTTCTGGTGGGA +
Preference number: 6 (lower is better)
Translates to: VIGPRGTRGRHL*QLGFFTHLLVG
Trigger: TCCCACCAGAAGATGGGTGAAGAAGCCCAGCTGCAAGAGATGGCGTCCACGAGTTCCCCGAGGGCCAATGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033731.4
CDS GCA 72 bp ATGGAGGTCACAGCCCTGGAATATGCCAGTGCCTGCTaGTCCGGGTTCAAACTGAGACCCAGCCACTCCTGT +
Preference number: 6 (lower is better)
Translates to: MEVTALEYASAC*SGFKLRPSHSC
Trigger: ACAGGAGTGGCTGGGTCTCAGTTTGAACCCGGAGCAGCAGGCACTGGCATATTCCAGGGCTGTGACCTCCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033731.4
CDS GCA 72 bp TCATTGGCCCTCGGGGAACTCGTGGACGCCATCTCTTaGAGCTGGGCTTCTTCACCCATCTTCTGGTGGGAA +
Preference number: 6 (lower is better)
Translates to: SLALGELVDAIS*SWASSPIFWWE
Trigger: TTCCCACCAGAAGATGGGTGAAGAAGCCCAGCTGCAAGAGATGGCGTCCACGAGTTCCCCGAGGGCCAATGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033731.4
CDS GCA 72 bp AACAGGAACTCCAATGGAGGTCACAGCCCTGGAATATaGCAGTGCCTGCTGCTCCGGGTTCAAACTGAGACC +
Preference number: 6 (lower is better)
Translates to: NRNSNGGHSPGI*QCLLLRVQTET
Trigger: GGTCTCAGTTTGAACCCGGAGCAGCAGGCACTGGCATATTCCAGGGCTGTGACCTCCATTGGAGTTCCTGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033731.4
CDS GCA 72 bp TCCTCACACTCAAAGGGCTTCGCCTCCCTCTCCATTTaGTCCCTCTTTTCCAAGGCATCTTCCAGAGCCCGA +
Preference number: 6 (lower is better)
Translates to: SSHSKGFASLSI*SLFSKASSRAR
Trigger: TCGGGCTCTGGAAGATGCCTTGGAAAAGAGGGAGCAAATGGAGAGGGAGGCGAAGCCCTTTGAGTGTGAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033731.4
ENSMUST00000114499.8
CDS CCA 72 bp GACTCACAACAGGAACTCCAATGGAGGTCACAGCCCTaGAATATGCCAGTGCCTGCTGCTCCGGGTTCAAAC +
Preference number: 6 (lower is better)
Translates to: DSQQELQWRSQP*NMPVPAAPGSN
Trigger: GTTTGAACCCGGAGCAGCAGGCACTGGCATATTCCAGGGCTGTGACCTCCATTGGAGTTCCTGTTGTGAGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033731.4
CDS CCA 72 bp AGGTGCCACGGTACAATATCAAATGACACCAAATCCTaGGCCTCCAGCATCTCAAGAGGGACTGCCAGGACC +
Preference number: 6 (lower is better)
Translates to: RCHGTISNDTKS*ASSISRGTART
Trigger: GGTCCTGGCAGTCCCTCTTGAGATGCTGGAGGCCCAGGATTTGGTGTCATTTGATATTGTACCGTGGCACCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033731.4
CDS CCA 72 bp GAGATACCAAAGCAGGACTCACAACAGGAACTCCAATaGAGGTCACAGCCCTGGAATATGCCAGTGCCTGCT +
Preference number: 6 (lower is better)
Translates to: EIPKQDSQQELQ*RSQPWNMPVPA
Trigger: AGCAGGCACTGGCATATTCCAGGGCTGTGACCTCCATTGGAGTTCCTGTTGTGAGTCCTGCTTTGGTATCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033731.4
CDS TCA 72 bp CTCCTGTTCTGTGAGGTGCCACGGTACAATATCAAATaGCACCAAATCCTGGGCCTCCAGCATCTCAAGAGG +
Preference number: 6 (lower is better)
Translates to: LLFCEVPRYNIK*HQILGLQHLKR
Trigger: CCTCTTGAGATGCTGGAGGCCCAGGATTTGGTGTCATTTGATATTGTACCGTGGCACCTCACAGAACAGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033731.4
CDS TCA 72 bp GAGGGTTGGATCAGATACCAACAGAACTTGTCCTTGTaGCAGGTGAGATACCAAAGCAGGACTCACAACAGG +
Preference number: 6 (lower is better)
Translates to: EGWIRYQQNLSL*QVRYQSRTHNR
Trigger: CCTGTTGTGAGTCCTGCTTTGGTATCTCACCTGTCACAAGGACAAGTTCTGTTGGTATCTGATCCAACCCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033731.4
CDS GCA 72 bp TTCAAACTGAGACCCAGCCACTCCTGTTCTGTGAGGTaGCACGGTACAATATCAAATGACACCAAATCCTGG +
Preference number: 6 (lower is better)
Translates to: FKLRPSHSCSVR*HGTISNDTKSW
Trigger: CCAGGATTTGGTGTCATTTGATATTGTACCGTGGCACCTCACAGAACAGGAGTGGCTGGGTCTCAGTTTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033731.4
CDS TCA 72 bp GGATCAGATACCAACAGAACTTGTCCTTGTGACAGGTaGGATACCAAAGCAGGACTCACAACAGGAACTCCA +
Preference number: 6 (lower is better)
Translates to: GSDTNRTCPCDR*DTKAGLTTGTP
Trigger: TGGAGTTCCTGTTGTGAGTCCTGCTTTGGTATCTCACCTGTCACAAGGACAAGTTCTGTTGGTATCTGATCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033731.4