RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZFP251 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022526

Ensembl transcript IDs: ENSMUST00000080406.7, ENSMUST00000229494.2

Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CAGGCAGCTCTGCTGCCAACTAGTGTCCATCCAACCTCGCTTCACTaGGAAATGTTGTCTGGAGTTGGAGAAAACCACAGCTTGCTCAAC +
Preference number: 1 (lower is better)
Translates to: QAALLPTSVHPTSLH*EMLSGVGENHSLLN
Trigger: GTTGAGCAAGCTGTGGTTTTCTCCAACTCCAGACAACATTTCTCAGTGAAGCGAGGTTGGATGGACACTAGTTGGCAGCAGAGCTGCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080406.7
3UTR TCA 90 bp AAACCACAGCTTGCTCAACTTCCAAAGGAACAAAAGGGTAGATTCTaGATCCATTTGCTGTCAGAGTGGAGGCACCCAACCTCACAGGAT +
Preference number: 1 (lower is better)
Translates to: KPQLAQLPKEQKGRF*IHLLSEWRHPTSQD
Trigger: ATCCTGTGAGGTTGGGTGCCTCCACTCTGACAGCAAATGGATTCAGAATCTACCCTTTTGTTCCTTTGGAAGTTGAGCAAGCTGTGGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080406.7
3UTR GCA 90 bp TTGCTCAACTTCCAAAGGAACAAAAGGGTAGATTCTGAATCCATTTaGTGTCAGAGTGGAGGCACCCAACCTCACAGGATAACCCCAGTA +
Preference number: 1 (lower is better)
Translates to: LLNFQRNKRVDSESI*CQSGGTQPHRITPV
Trigger: TACTGGGGTTATCCTGTGAGGTTGGGTGCCTCCACTCTGACAGCAAATGGATTCAGAATCTACCCTTTTGTTCCTTTGGAAGTTGAGCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080406.7
3UTR-3UTR TCA 90 bp GCCGGATTCAGGCAGCTCTGCTGCCAACTAGTGTCCATCCAACCTCGCTTCACTAGTCCCACCAGCCACTaGCAGAGACACCTCGGTCCC +
Preference number: 2 (lower is better)
Translates to: AGFRQLCCQLVSIQPRFTSPTSH*QRHLGP
Trigger: GGGACCGAGGTGTCTCTGTCAGTGGCTGGTGGGACT...AGTGAAGCGAGGTTGGATGGACACTAGTTGGCAGCAGAGCTGCCTGAATCCGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080406.7
3UTR CAA 90 bp ACCTGCTGTTCTGAGTGGGTCAGGACCTTGGGCATGGAGTGTGGGTaGGGTGGACACAATAGGCTACACAGCCCCAGCCTCCTAACGAAC +
Preference number: 2 (lower is better)
Translates to: TCCSEWVRTLGMECG*GGHNRLHSPSLLTN
Trigger: GTTCGTTAGGAGGCTGGGGCTGTGTAGCCTATTGTGTCCACCCAACCCACACTCCATGCCCAAGGTCCTGACCCACTCAGAACAGCAGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080406.7
3UTR-3UTR TCA 90 bp TCACCACAGCTGTCAGTTTGTGCTGATGTCTCTGCAGCCTCCACCCTTCGCCTCGACCTGATGCTAACGTaGCCTGCTGTTCTGAGTGGG +
Preference number: 2 (lower is better)
Translates to: SPQLSVCADVSAASTLRLDLMLT*PAVLSG
Trigger: CCCACTCAGAACAGCAGGTCACGTTAGCATCAGGTC...GAGGCGAAGGGTGGAGGCTGCAGAGACATCAGCACAAACTGACAGCTGTGGTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080406.7
3UTR-3UTR TCA 90 bp CCAAATCCCCCAGTTCTCTGGGTTTCTCTCTTAAAATCACCAATGAAGAGACGTCGTGACCTGCTGTTCTaGGTGGGTCAGGACCTTGGG +
Preference number: 2 (lower is better)
Translates to: PNPPVLWVSLLKSPMKRRRDLLF*VGQDLG
Trigger: CCCAAGGTCCTGACCCACTCAGAACAGCAGGTCACG...ACGTCTCTTCATTGGTGATTTTAAGAGAGAAACCCAGAGAACTGGGGGATTTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000080406.7
3UTR-3UTR CCA 90 bp TCTTTCCTTAGCATCATTGAGACAAGCCAAATCCCCCAGTTCTCTGGGTTTCTCAGTGGGTCAGGACCTTaGGCATGGAGTGTGGGTTGG +
Preference number: 2 (lower is better)
Translates to: SFLSIIETSQIPQFSGFLSGSGP*AWSVGW
Trigger: CCAACCCACACTCCATGCCCAAGGTCCTGACCCACT...GAGAAACCCAGAGAACTGGGGGATTTGGCTTGTCTCAATGATGCTAAGGAAAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000080406.7
3UTR-3UTR CCA 90 bp CCAAATCCCCCAGTTCTCTGGGTTTCTCTCTTAAAATCACCAATGAAGAGACGTACCTGCTGTTCTGAGTaGGTCAGGACCTTGGGCATG +
Preference number: 2 (lower is better)
Translates to: PNPPVLWVSLLKSPMKRRTCCSE*VRTLGM
Trigger: CATGCCCAAGGTCCTGACCCACTCAGAACAGCAGGT...ACGTCTCTTCATTGGTGATTTTAAGAGAGAAACCCAGAGAACTGGGGGATTTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000080406.7
3UTR CAA 90 bp CTAGTGTCCATCCAACCTCGCTTCACTGAGAAATGTTGTCTGGAGTaGGAGAAAACCACAGCTTGCTCAACTTCCAAAGGAACAAAAGGG +
Preference number: 2 (lower is better)
Translates to: LVSIQPRFTEKCCLE*EKTTACSTSKGTKG
Trigger: CCCTTTTGTTCCTTTGGAAGTTGAGCAAGCTGTGGTTTTCTCCAACTCCAGACAACATTTCTCAGTGAAGCGAGGTTGGATGGACACTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080406.7
3UTR CAA 90 bp AAAAAGGAAAGTCTGGTAATGAGGATACCTGGGAGTCATGCTGTGTaGGCAGAGGAGAATGGAAATTACAACATTTGTACACTGCACATG +
Preference number: 2 (lower is better)
Translates to: KKESLVMRIPGSHAV*AEENGNYNICTLHM
Trigger: CATGTGCAGTGTACAAATGTTGTAATTTCCATTCTCCTCTGCCAACACAGCATGACTCCCAGGTATCCTCATTACCAGACTTTCCTTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000080406.7
3UTR GCA 72 bp ACAGAGACACCTCGGTCCCCAAACCATCCACATGCTTaGCAATCATGGCCATATCTTTCCTTAGCATCATTG +
Preference number: 3 (lower is better)
Translates to: TETPRSPNHPHA*QSWPYLSLASL
Trigger: CAATGATGCTAAGGAAAGATATGGCCATGATTGGCAAGCATGTGGATGGTTTGGGGACCGAGGTGTCTCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080406.7
3UTR-3UTR CAA 90 bp AAACCTCCCATCAACTGCTCTTTAGTGTGGGAATTCAACCCTGTGATAAAAACCGGCATGGAGTGTGGGTaGGGTGGACACAATAGGCTA +
Preference number: 3 (lower is better)
Translates to: KPPINCSLVWEFNPVIKTGMECG*GGHNRL
Trigger: TAGCCTATTGTGTCCACCCAACCCACACTCCATGCC...GGTTTTTATCACAGGGTTGAATTCCCACACTAAAGAGCAGTTGATGGGAGGTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000080406.7
3UTR GCA 72 bp AAAGGAAAGTCTGGTAATGAGGATACCTGGGAGTCATaGTGTGTTGGCAGAGGAGAATGGAAATTACAACAT +
Preference number: 3 (lower is better)
Translates to: KGKSGNEDTWES*CVGRGEWKLQH
Trigger: ATGTTGTAATTTCCATTCTCCTCTGCCAACACAGCATGACTCCCAGGTATCCTCATTACCAGACTTTCCTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080406.7
3UTR-3UTR CAA 90 bp ATACCTGGGAGTCATGCTGTGTTGGCAGAGGAGAATGGAAATTACAACATTTGTAAGCTTCCATATCCTTaGCACCTAGAGAACCTACAT +
Preference number: 3 (lower is better)
Translates to: IPGSHAVLAEENGNYNICKLPYP*HLENLH
Trigger: ATGTAGGTTCTCTAGGTGCAAAGGATATGGAAGCTT...ACAAATGTTGTAATTTCCATTCTCCTCTGCCAACACAGCATGACTCCCAGGTAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080406.7
CDS-3UTR GCA 90 bp GTTTGTGCTGATGTCTCTGCAGCCTCCACCCTTCGCCTCACAGTGGCTTCCCCCCCCCAGTGTGACTCCTaGGGTGCCGACTTAGGTCTG +
Preference number: 4 (lower is better)
Translates to: VCADVSAASTLRLTVASPPQCDS*GADLGL
Trigger: CAGACCTAAGTCGGCACCGCAGGAGTCACACTGGGG...GGGGGAAGCCACTGTGAGGCGAAGGGTGGAGGCTGCAGAGACATCAGCACAAAC
61% GC, longest homopolymer 9 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000080406.7
CDS-3UTR GCA 90 bp GTGACCTGCTGTTCTGAGTGGGTCAGGACCTTGGGCATGGAGTGTGGGTTGGGTTGGGGGCTAAGCTGCTaGCCTTCTGCCCTGGAGAAG +
Preference number: 4 (lower is better)
Translates to: VTCCSEWVRTLGMECGLGWGLSC*PSALEK
Trigger: CTTCTCCAGGGCAGAAGGGCAGCAGCTTAGCCCCCA...ACCCAACCCACACTCCATGCCCAAGGTCCTGACCCACTCAGAACAGCAGGTCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000080406.7
CDS-3UTR GCA 90 bp GTGACCTGCTGTTCTGAGTGGGTCAGGACCTTGGGCATGGAGTGTGGGTTGGGTCCTTTCCACACCAAGTaGAGCCGTGGGGCTTCTCCC +
Preference number: 4 (lower is better)
Translates to: VTCCSEWVRTLGMECGLGPFHTK*SRGASP
Trigger: GGGAGAAGCCCCACGGCTGCACTTGGTGTGGAAAGG...ACCCAACCCACACTCCATGCCCAAGGTCCTGACCCACTCAGAACAGCAGGTCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080406.7
3UTR CAA 72 bp TCTGAGTGGGTCAGGACCTTGGGCATGGAGTGTGGGTaGGGTGGACACAATAGGCTACACAGCCCCAGCCTC +
Preference number: 4 (lower is better)
Translates to: SEWVRTLGMECG*GGHNRLHSPSL
Trigger: GAGGCTGGGGCTGTGTAGCCTATTGTGTCCACCCAACCCACACTCCATGCCCAAGGTCCTGACCCACTCAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080406.7
CDS-3UTR TCA 90 bp TCACCACAGCTGTCAGTTTGTGCTGATGTCTCTGCAGCCTCCACCCTTCGCCTCGGCTCGCGTTCCGACTaGAAGCCTTTCCACACCAAG +
Preference number: 4 (lower is better)
Translates to: SPQLSVCADVSAASTLRLGSRSD*KPFHTK
Trigger: CTTGGTGTGGAAAGGCTTTCAGTCGGAACGCGAGCC...GAGGCGAAGGGTGGAGGCTGCAGAGACATCAGCACAAACTGACAGCTGTGGTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080406.7
CDS-3UTR TCA 90 bp TCACCACAGCTGTCAGTTTGTGCTGATGTCTCTGCAGCCTCCACCCTTCGCCTCTGGATCCTCTGGTGCTaGGTTAACTGGGGGCTTTGG +
Preference number: 4 (lower is better)
Translates to: SPQLSVCADVSAASTLRLWILWC*VNWGLW
Trigger: CCAAAGCCCCCAGTTAACTCAGCACCAGAGGATCCA...GAGGCGAAGGGTGGAGGCTGCAGAGACATCAGCACAAACTGACAGCTGTGGTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000080406.7
CDS-3UTR CCA 90 bp GTTTGTGCTGATGTCTCTGCAGCCTCCACCCTTCGCCTCACAGTGGCTTCCCCCTCCGTCCTTCAATTGTaGCTTCTCTCCAACACGCGT +
Preference number: 4 (lower is better)
Translates to: VCADVSAASTLRLTVASPSVLQL*LLSNTR
Trigger: ACGCGTGTTGGAGAGAAGCCACAATTGAAGGACGGA...GGGGGAAGCCACTGTGAGGCGAAGGGTGGAGGCTGCAGAGACATCAGCACAAAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000080406.7
3UTR CAA 72 bp GCTAACGTGACCTGCTGTTCTGAGTGGGTCAGGACCTaGGGCATGGAGTGTGGGTTGGGTGGACACAATAGG +
Preference number: 4 (lower is better)
Translates to: ANVTCCSEWVRT*GMECGLGGHNR
Trigger: CCTATTGTGTCCACCCAACCCACACTCCATGCCCAAGGTCCTGACCCACTCAGAACAGCAGGTCACGTTAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080406.7
CDS-3UTR TCA 90 bp GCTGGCCCTAAGCTCTGGTCACCACAGCTGTCAGTTTGTGCTGATGTCTCTGCAGCCTGGGAATCCCAGTaGAGCCACGTTCCCATAGTT +
Preference number: 4 (lower is better)
Translates to: AGPKLWSPQLSVCADVSAAWESQ*SHVPIV
Trigger: AACTATGGGAACGTGGCTTCACTGGGATTCCCAGGC...TGCAGAGACATCAGCACAAACTGACAGCTGTGGTGACCAGAGCTTAGGGCCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080406.7
CDS-3UTR TCA 90 bp TCACCACAGCTGTCAGTTTGTGCTGATGTCTCTGCAGCCTCCACCCTTCGCCTCACGTGCTCGGTAAGATaGGAATTGAAGCCAAAGGCC +
Preference number: 4 (lower is better)
Translates to: SPQLSVCADVSAASTLRLTCSVR*ELKPKA
Trigger: GGCCTTTGGCTTCAATTCTCATCTTACCGAGCACGT...GAGGCGAAGGGTGGAGGCTGCAGAGACATCAGCACAAACTGACAGCTGTGGTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080406.7
CDS-3UTR CCA 90 bp CACCTAGAGAACCTACATTTAGTCCCACCAGCCACTGACAGAGACACCTCGGTCCTGGGAGATCAGTTCTaGCTTAGGGCCTGGGAATCC +
Preference number: 4 (lower is better)
Translates to: HLENLHLVPPATDRDTSVLGDQF*LRAWES
Trigger: GGATTCCCAGGCCCTAAGCCAGAACTGATCTCCCAG...GACCGAGGTGTCTCTGTCAGTGGCTGGTGGGACTAAATGTAGGTTCTCTAGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080406.7
CDS-3UTR CCA 90 bp GTGACCTGCTGTTCTGAGTGGGTCAGGACCTTGGGCATGGAGTGTGGGTTGGGTATCTCAGAATCTGTCTaGCAACGTCTCAAGACTTCT +
Preference number: 4 (lower is better)
Translates to: VTCCSEWVRTLGMECGLGISESV*QRLKTS
Trigger: AGAAGTCTTGAGACGTTGCCAGACAGATTCTGAGAT...ACCCAACCCACACTCCATGCCCAAGGTCCTGACCCACTCAGAACAGCAGGTCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080406.7
CDS-3UTR GCA 90 bp GCTGGCCCTAAGCTCTGGTCACCACAGCTGTCAGTTTGTGCTGATGTCTCTGCATGGACTGTGAGGAAGTaGTGTAAGTTTTCCCACACT +
Preference number: 4 (lower is better)
Translates to: AGPKLWSPQLSVCADVSAWTVRK*CKFSHT
Trigger: AGTGTGGGAAAACTTACAGCACTTCCTCACAGTCCA...TGCAGAGACATCAGCACAAACTGACAGCTGTGGTGACCAGAGCTTAGGGCCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080406.7
CDS-3UTR TCA 90 bp AGACAAGCCAAATCCCCCAGTTCTCTGGGTTTCTCTCTTAAAATCACCAATGAAGGCTTTTCCCCAGTGTaGCTCCTGCGGTGCCGACTT +
Preference number: 4 (lower is better)
Translates to: RQAKSPSSLGFSLKITNEGFSPV*LLRCRL
Trigger: AAGTCGGCACCGCAGGAGTCACACTGGGGAAAAGCC...TTCATTGGTGATTTTAAGAGAGAAACCCAGAGAACTGGGGGATTTGGCTTGTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000080406.7
CDS-3UTR TCA 90 bp GAGAACCTACATTTAGTCCCACCAGCCACTGACAGAGACACCTCGGTCCCCAAAGTGCTGAATGAGACTTaGACTTCTACTGAAGGCCTT +
Preference number: 4 (lower is better)
Translates to: ENLHLVPPATDRDTSVPKVLNET*TSTEGL
Trigger: AAGGCCTTCAGTAGAAGTTCAAGTCTCATTCAGCAC...TTTGGGGACCGAGGTGTCTCTGTCAGTGGCTGGTGGGACTAAATGTAGGTTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080406.7
CDS-3UTR TCA 90 bp TCTGGGACCTCAAACTCAGAGAGATCCACCTGTCTCTGTCACTCGAGTGCCTGGGGAATTTCGGTGATATaGATTCTGGGGTTTTTACTT +
Preference number: 4 (lower is better)
Translates to: SGTSNSERSTCLCHSSAWGISVI*ILGFLL
Trigger: AAGTAAAAACCCCAGAATTCATATCACCGAAATTCC...CCAGGCACTCGAGTGACAGAGACAGGTGGATCTCTCTGAGTTTGAGGTCCCAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000080406.7
CDS-3UTR CCA 90 bp TCTTTCCTTAGCATCATTGAGACAAGCCAAATCCCCCAGTTCTCTGGGTTTCTCTACACAGCCACATCTTaGAAGGTCAGAGGCGTCTCA +
Preference number: 4 (lower is better)
Translates to: SFLSIIETSQIPQFSGFLYTATS*KVRGVS
Trigger: TGAGACGCCTCTGACCTTCCAAGATGTGGCTGTGTA...GAGAAACCCAGAGAACTGGGGGATTTGGCTTGTCTCAATGATGCTAAGGAAAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000080406.7
CDS-3UTR TCA 90 bp GAGAACCTACATTTAGTCCCACCAGCCACTGACAGAGACACCTCGGTCCCCAAATGTATTATACGGTGCTaGATGAGACTTGAACTTCTA +
Preference number: 4 (lower is better)
Translates to: ENLHLVPPATDRDTSVPKCIIRC*MRLELL
Trigger: TAGAAGTTCAAGTCTCATTCAGCACCGTATAATACA...TTTGGGGACCGAGGTGTCTCTGTCAGTGGCTGGTGGGACTAAATGTAGGTTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080406.7
CDS-3UTR TCA 90 bp ACCAAAAGATCTTTAAATTACAGCACCAGGACAATCTCCAGCAGTTTTACTCTTTGGCTCCCATCTCCCTaGCCTTCATGGGCACAAGCT +
Preference number: 4 (lower is better)
Translates to: TKRSLNYSTRTISSSFTLWLPSP*PSWAQA
Trigger: AGCTTGTGCCCATGAAGGTCAGGGAGATGGGAGCCA...AAGAGTAAAACTGCTGGAGATTGTCCTGGTGCTGTAATTTAAAGATCTTTTGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080406.7
3UTR CAA 72 bp ATCCAACCTCGCTTCACTGAGAAATGTTGTCTGGAGTaGGAGAAAACCACAGCTTGCTCAACTTCCAAAGGA +
Preference number: 4 (lower is better)
Translates to: IQPRFTEKCCLE*EKTTACSTSKG
Trigger: TCCTTTGGAAGTTGAGCAAGCTGTGGTTTTCTCCAACTCCAGACAACATTTCTCAGTGAAGCGAGGTTGGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080406.7
CDS-3UTR TCA 90 bp ATACCTGGGAGTCATGCTGTGTTGGCAGAGGAGAATGGAAATTACAACATTTGTGACGGAGATAGGAATTaGGCCCAAAAGTTTTCCCAC +
Preference number: 4 (lower is better)
Translates to: IPGSHAVLAEENGNYNICDGDRN*AQKFSH
Trigger: GTGGGAAAACTTTTGGGCTCAATTCCTATCTCCGTC...ACAAATGTTGTAATTTCCATTCTCCTCTGCCAACACAGCATGACTCCCAGGTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080406.7
CDS-3UTR TCA 90 bp GATACCTGGGAGTCATGCTGTGTTGGCAGAGGAGAATGGAAATTACAACATTTGATAGTCCATGGACTGTaGGGAAGTGCTGTAAGTTTT +
Preference number: 4 (lower is better)
Translates to: DTWESCCVGRGEWKLQHLIVHGL*GSAVSF
Trigger: AAAACTTACAGCACTTCCTCACAGTCCATGGACTAT...CAAATGTTGTAATTTCCATTCTCCTCTGCCAACACAGCATGACTCCCAGGTATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080406.7
3UTR CAA 72 bp AGTCTGGTAATGAGGATACCTGGGAGTCATGCTGTGTaGGCAGAGGAGAATGGAAATTACAACATTTGTACA +
Preference number: 4 (lower is better)
Translates to: SLVMRIPGSHAV*AEENGNYNICT
Trigger: TGTACAAATGTTGTAATTTCCATTCTCCTCTGCCAACACAGCATGACTCCCAGGTATCCTCATTACCAGACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080406.7
CDS-3UTR CCA 90 bp AGACAAGCCAAATCCCCCAGTTCTCTGGGTTTCTCTCTTAAAATCACCAATGAAACTGTAACAACACTTTaGCTGGGATTCAAGTGTTTG +
Preference number: 4 (lower is better)
Translates to: RQAKSPSSLGFSLKITNETVTTL*LGFKCL
Trigger: CAAACACTTGAATCCCAGCCAAAGTGTTGTTACAGT...TTCATTGGTGATTTTAAGAGAGAAACCCAGAGAACTGGGGGATTTGGCTTGTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000080406.7
CDS-3UTR TCA 90 bp ACCAAAAGATCTTTAAATTACAGCACCAGGACAATCTCCAGCAGTTTTACTCTTGTGAAGAATAAGATTTaGGCTGTGTGTAAAGGCCCG +
Preference number: 4 (lower is better)
Translates to: TKRSLNYSTRTISSSFTLVKNKI*AVCKGP
Trigger: CGGGCCTTTACACACAGCTCAAATCTTATTCTTCAC...AAGAGTAAAACTGCTGGAGATTGTCCTGGTGCTGTAATTTAAAGATCTTTTGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080406.7
CDS TCA 90 bp CATCACTTCGAATCGTCCACTGCAGGACAAGTTTCGCACTGTGGCTaGAGGCCCTGCCGTGTCTCTCTCCAGCGGACAGATGGCTGGAGT +
Preference number: 5 (lower is better)
Translates to: HHFESSTAGQVSHCG*RPCRVSLQRTDGWS
Trigger: ACTCCAGCCATCTGTCCGCTGGAGAGAGACACGGCAGGGCCTTCAGCCACAGTGCGAAACTTGTCCTGCAGTGGACGATTCGAAGTGATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080406.7
ENSMUST00000229494.2
CDS-3UTR CAA 90 bp GCCGGATTCAGGCAGCTCTGCTGCCAACTAGTGTCCATCCAACCTCGCTTCACTAGATCCGTCCTTCAATaGTGGCTTCTCTCCAACACG +
Preference number: 5 (lower is better)
Translates to: AGFRQLCCQLVSIQPRFTRSVLQ*WLLSNT
Trigger: CGTGTTGGAGAGAAGCCACAATTGAAGGACGGATCT...AGTGAAGCGAGGTTGGATGGACACTAGTTGGCAGCAGAGCTGCCTGAATCCGGC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080406.7
CDS CCA 90 bp TTTAAAATGGATAGCTCCTTCTCGGCCTCGATCTCAGAATCTGTCTaGCAACGTCTCAAGACTTCTGGTTCTTCAGCCCCGAGAAGATCC +
Preference number: 5 (lower is better)
Translates to: FKMDSSFSASISESV*QRLKTSGSSAPRRS
Trigger: GGATCTTCTCGGGGCTGAAGAACCAGAAGTCTTGAGACGTTGCCAGACAGATTCTGAGATCGAGGCCGAGAAGGAGCTATCCATTTTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000080406.7
ENSMUST00000229494.2
CDS GCA 90 bp TTCAAGTGTTTGTCAAACACAGAAGTCTGGGCGTTCTTGGGAAACTaGTCCCTACAGACCGCAGCGTCCTTTTTAGCAATGCTCTTCAAA +
Preference number: 5 (lower is better)
Translates to: FKCLSNTEVWAFLGN*SLQTAASFLAMLFK
Trigger: TTTGAAGAGCATTGCTAAAAAGGACGCTGCGGTCTGTAGGGAGCAGTTTCCCAAGAACGCCCAGACTTCTGTGTTTGACAAACACTTGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080406.7
ENSMUST00000229494.2
CDS-3UTR CAA 90 bp ACCAAAAGATCTTTAAATTACAGCACCAGGACAATCTCCAGCAGTTTTACTCTTGTACACAGCCACATCTaGGAAGGTCAGAGGCGTCTC +
Preference number: 5 (lower is better)
Translates to: TKRSLNYSTRTISSSFTLVHSHI*EGQRRL
Trigger: GAGACGCCTCTGACCTTCCAAGATGTGGCTGTGTAC...AAGAGTAAAACTGCTGGAGATTGTCCTGGTGCTGTAATTTAAAGATCTTTTGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080406.7
CDS-3UTR CAA 90 bp ACCAAAAGATCTTTAAATTACAGCACCAGGACAATCTCCAGCAGTTTTACTCTTCTGGGATTCAAGTGTTaGTCAAACACAGAAGTCTGG +
Preference number: 5 (lower is better)
Translates to: TKRSLNYSTRTISSSFTLLGFKC*SNTEVW
Trigger: CCAGACTTCTGTGTTTGACAAACACTTGAATCCCAG...AAGAGTAAAACTGCTGGAGATTGTCCTGGTGCTGTAATTTAAAGATCTTTTGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080406.7
CDS CCA 72 bp GATAGCTCCTTCTCGGCCTCGATCTCAGAATCTGTCTaGCAACGTCTCAAGACTTCTGGTTCTTCAGCCCCG +
Preference number: 6 (lower is better)
Translates to: DSSFSASISESV*QRLKTSGSSAP
Trigger: CGGGGCTGAAGAACCAGAAGTCTTGAGACGTTGCCAGACAGATTCTGAGATCGAGGCCGAGAAGGAGCTATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000080406.7
ENSMUST00000229494.2
CDS CCA 72 bp TGGCTGGGATTCAAGTGTTTGTCAAACACAGAAGTCTaGGCGTTCTTGGGAAACTGCTCCCTACAGACCGCA +
Preference number: 6 (lower is better)
Translates to: WLGFKCLSNTEV*AFLGNCSLQTA
Trigger: TGCGGTCTGTAGGGAGCAGTTTCCCAAGAACGCCCAGACTTCTGTGTTTGACAAACACTTGAATCCCAGCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080406.7
ENSMUST00000229494.2
CDS CAA 90 bp TGGCTGGGATTCAAGTGTTTGTCAAACACAGAAGTCTGGGCGTTCTaGGGAAACTGCTCCCTACAGACCGCAGCGTCCTTTTTAGCAATG +
Preference number: 6 (lower is better)
Translates to: WLGFKCLSNTEVWAF*GNCSLQTAASFLAM
Trigger: CATTGCTAAAAAGGACGCTGCGGTCTGTAGGGAGCAGTTTCCCAAGAACGCCCAGACTTCTGTGTTTGACAAACACTTGAATCCCAGCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000080406.7
ENSMUST00000229494.2
CDS CCA 72 bp TCAAGTGTTTGTCAAACACAGAAGTCTGGGCGTTCTTaGGAAACTGCTCCCTACAGACCGCAGCGTCCTTTT +
Preference number: 6 (lower is better)
Translates to: SSVCQTQKSGRS*ETAPYRPQRPF
Trigger: AAAAGGACGCTGCGGTCTGTAGGGAGCAGTTTCCCAAGAACGCCCAGACTTCTGTGTTTGACAAACACTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080406.7
ENSMUST00000229494.2
CDS CAA 72 bp TTCAAGTGTTTGTCAAACACAGAAGTCTGGGCGTTCTaGGGAAACTGCTCCCTACAGACCGCAGCGTCCTTT +
Preference number: 6 (lower is better)
Translates to: FKCLSNTEVWAF*GNCSLQTAASF
Trigger: AAAGGACGCTGCGGTCTGTAGGGAGCAGTTTCCCAAGAACGCCCAGACTTCTGTGTTTGACAAACACTTGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080406.7
ENSMUST00000229494.2
CDS CCA 72 bp GGGTTTTTACTTCTTCGAAACATTTCTGGTTTAAAATaGATAGCTCCTTCTCGGCCTCGATCTCAGAATCTG +
Preference number: 6 (lower is better)
Translates to: GFLLLRNISGLK*IAPSRPRSQNL
Trigger: CAGATTCTGAGATCGAGGCCGAGAAGGAGCTATCCATTTTAAACCAGAAATGTTTCGAAGAAGTAAAAACCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000080406.7
ENSMUST00000229494.2
CDS CAA 72 bp CTGTCCTGCTTTATTTCTTTGAACTGTAACAACACTTaGGCTGGGATTCAAGTGTTTGTCAAACACAGAAGT +
Preference number: 6 (lower is better)
Translates to: LSCFISLNCNNT*AGIQVFVKHRS
Trigger: ACTTCTGTGTTTGACAAACACTTGAATCCCAGCCAAAGTGTTGTTACAGTTCAAAGAAATAAAGCAGGACAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000080406.7
ENSMUST00000229494.2