Pregenerated sensors for ZFP239 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042097Ensembl transcript IDs: ENSMUST00000079405.15, ENSMUST00000172088.8
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGTTGGATGTGGTGGCACACATCCGCAACCCTAGCCACGGTGAGCTaGGAAGTGGAGACAGTTAGATCCATGGGACTCTGGCCTGGCTTA | + |
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Preference number: 1 (lower is better) Translates to: GWMWWHTSATLATVS*EVETVRSMGLWPGL Trigger: TAAGCCAGGCCAGAGTCCCATGGATCTAACTGTCTCCACTTCCCAGCTCACCGTGGCTAGGGTTGCGGATGTGTGCCACCACATCCAACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079405.15 ENSMUST00000172088.8 |
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| 3UTR TCA 90 bp | TGTGTGTGTGTGGGTGGGGGCGTATCAGGGCTCAAACTCAGGGACTaGTACATGCTAGGCAAGCATGCTACCTCTGATATGCACACTCGG | + |
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Preference number: 1 (lower is better) Translates to: CVCVGGGVSGLKLRD*YMLGKHATSDMHTR Trigger: CCGAGTGTGCATATCAGAGGTAGCATGCTTGCCTAGCATGTATCAGTCCCTGAGTTTGAGCCCTGATACGCCCCCACCCACACACACACA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000079405.15 ENSMUST00000172088.8 |
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| 3UTR CCA 90 bp | TCTGATTGGCTGCCACATATTCTTCACATTTCTGAAGCCTCTAATTaGCTGCCTCATGTTCCCCACGTACTGTTTCTCCTCTTCCACTGG | + |
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Preference number: 1 (lower is better) Translates to: SDWLPHILHISEASN*LPHVPHVLFLLFHW Trigger: CCAGTGGAAGAGGAGAAACAGTACGTGGGGAACATGAGGCAGCCAATTAGAGGCTTCAGAAATGTGAAGAATATGTGGCAGCCAATCAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079405.15 |
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| 3UTR TCA 90 bp | TGGACTTTCCACCATAGTAGTATGTGGGGAGCACTTCCTGTAGTGTaGGTGCAAACTGATGCACATTTTTGTACTAAACACAACAGGTCA | + |
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Preference number: 1 (lower is better) Translates to: WTFHHSSMWGALPVV*VQTDAHFCTKHNRS Trigger: TGACCTGTTGTGTTTAGTACAAAAATGTGCATCAGTTTGCACTCACACTACAGGAAGTGCTCCCCACATACTACTATGGTGGAAAGTCCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079405.15 |
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| 3UTR TCA 90 bp | CCAAGAAACTACCTTCACTCGTTAAAAACTAATTATTTACATTCCTaGACAGCTGCCAGAGAGGAGGGACTGAGTGGACTTTCCACCATA | + |
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Preference number: 1 (lower is better) Translates to: PRNYLHSLKTNYLHS*TAAREEGLSGLSTI Trigger: TATGGTGGAAAGTCCACTCAGTCCCTCCTCTCTGGCAGCTGTTCAGGAATGTAAATAATTAGTTTTTAACGAGTGAAGGTAGTTTCTTGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000079405.15 |
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| 3UTR TCA 90 bp | AATTCTAACAACACTGGCAGAATTGCATTATACACTCTACCCATATaGGAAACCAGAGTAACCCATTCACTGTATAACATAAAATGTGCT | + |
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Preference number: 1 (lower is better) Translates to: NSNNTGRIALYTLPI*ETRVTHSLYNIKCA Trigger: AGCACATTTTATGTTATACAGTGAATGGGTTACTCTGGTTTCTCATATGGGTAGAGTGTATAATGCAATTCTGCCAGTGTTGTTAGAATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079405.15 ENSMUST00000172088.8 |
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| 3UTR-3UTR CCA 90 bp | CCCACGTACTGTTTCTCCTCTTCCACTGGATCATCTATTCTCCGTAGCACCCAAGTGTGTGTGTGTGTGTaGGTGGGGGCGTATCAGGGC | + |
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Preference number: 2 (lower is better) Translates to: PTYCFSSSTGSSILRSTQVCVCV*VGAYQG Trigger: GCCCTGATACGCCCCCACCCACACACACACACACAC...TTGGGTGCTACGGAGAATAGATGATCCAGTGGAAGAGGAGAAACAGTACGTGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000079405.15 |
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| 3UTR CAA 90 bp | GGGAAGTGGAGACAGTTAGATCCATGGGACTCTGGCCTGGCTTACTaGGTGACATTACACACCATGTGTGACAGACAGATGCCTAGTCTC | + |
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Preference number: 2 (lower is better) Translates to: GKWRQLDPWDSGLAY*VTLHTMCDRQMPSL Trigger: GAGACTAGGCATCTGTCTGTCACACATGGTGTGTAATGTCACCAAGTAAGCCAGGCCAGAGTCCCATGGATCTAACTGTCTCCACTTCCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079405.15 ENSMUST00000172088.8 |
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| 3UTR-3UTR TCA 90 bp | GCTGCCAGAGAGGAGGGACTGAGTGGACTTTCCACCATAGTAGTATGTGGGGAGATACCCCTCTCTGCATaGACACACATTCCTAACATG | + |
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Preference number: 2 (lower is better) Translates to: AAREEGLSGLSTIVVCGEIPLSA*THIPNM Trigger: CATGTTAGGAATGTGTGTTCATGCAGAGAGGGGTAT...CTCCCCACATACTACTATGGTGGAAAGTCCACTCAGTCCCTCCTCTCTGGCAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079405.15 |
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| 3UTR-3UTR CCA 90 bp | GATCCATGGGACTCTGGCCTGGCTTACTTGGTGACATTACACACCATGTGTGACAAAGTATTAATAAGCTaGAAACCGTGTGTGTGTGTG | + |
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Preference number: 2 (lower is better) Translates to: DPWDSGLAYLVTLHTMCDKVLIS*KPCVCV Trigger: CACACACACACACGGTTTCCAGCTTATTAATACTTT...GTCACACATGGTGTGTAATGTCACCAAGTAAGCCAGGCCAGAGTCCCATGGATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079405.15 ENSMUST00000172088.8 |
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| 3UTR-3UTR CCA 90 bp | TGGCTCTGTTGCTTCAGGATTTCTCCATTGTTTTTATCATGGAAGCATCCCCAAAGACAGTTAGATCCATaGGACTCTGGCCTGGCTTAC | + |
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Preference number: 2 (lower is better) Translates to: WLCCFRISPLFLSWKHPQRQLDP*DSGLAY Trigger: GTAAGCCAGGCCAGAGTCCCATGGATCTAACTGTCT...TTGGGGATGCTTCCATGATAAAAACAATGGAGAAATCCTGAAGCAACAGAGCCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079405.15 |
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| 3UTR CAA 90 bp | ATGGTTTCAGAGCCTCTGATTGACAGCCACATGGTTCCCATGTTTTaGACACCTCTGATTGGCTGCCACATATTCTTCACATTTCTGAAG | + |
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Preference number: 2 (lower is better) Translates to: MVSEPLIDSHMVPMF*TPLIGCHIFFTFLK Trigger: CTTCAGAAATGTGAAGAATATGTGGCAGCCAATCAGAGGTGTCAAAAACATGGGAACCATGTGGCTGTCAATCAGAGGCTCTGAAACCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079405.15 |
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| 3UTR-3UTR GCA 90 bp | CCTCTGATTGGCTGCCACATATTCTTCACATTTCTGAAGCCTCTAATTGGCTGCTGTGTGACAGACAGATaGCTAGTCTCACATACAGAA | + |
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Preference number: 2 (lower is better) Translates to: PLIGCHIFFTFLKPLIGCCVTDR*LVSHTE Trigger: TTCTGTATGTGAGACTAGGCATCTGTCTGTCACACA...GCAGCCAATTAGAGGCTTCAGAAATGTGAAGAATATGTGGCAGCCAATCAGAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079405.15 |
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| 3UTR-3UTR TCA 90 bp | AGTCTTAGTATGGTTTCAGAGCCTCTGATTGACAGCCACATGGTTCCCATGTTTTACACTCTACCCATATaGGAAACCAGAGTAACCCAT | + |
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Preference number: 2 (lower is better) Translates to: SLSMVSEPLIDSHMVPMFYTLPI*ETRVTH Trigger: ATGGGTTACTCTGGTTTCTCATATGGGTAGAGTGTA...AAACATGGGAACCATGTGGCTGTCAATCAGAGGCTCTGAAACCATACTAAGACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079405.15 |
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| 3UTR-3UTR CCA 90 bp | CCTCTGATTGGCTGCCACATATTCTTCACATTTCTGAAGCCTCTAATTGGCTGCTTTACTCTCCTATTTTaGCTCTGTTGCTTCAGGATT | + |
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Preference number: 2 (lower is better) Translates to: PLIGCHIFFTFLKPLIGCFTLLF*LCCFRI Trigger: AATCCTGAAGCAACAGAGCCAAAATAGGAGAGTAAA...GCAGCCAATTAGAGGCTTCAGAAATGTGAAGAATATGTGGCAGCCAATCAGAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079405.15 |
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| 3UTR-3UTR TCA 90 bp | TCTCCTATTTTGGCTCTGTTGCTTCAGGATTTCTCCATTGTTTTTATCATGGAACTCAAACTCAGGGACTaGTACATGCTAGGCAAGCAT | + |
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Preference number: 2 (lower is better) Translates to: SPILALLLQDFSIVFIMELKLRD*YMLGKH Trigger: ATGCTTGCCTAGCATGTATCAGTCCCTGAGTTTGAG...TTCCATGATAAAAACAATGGAGAAATCCTGAAGCAACAGAGCCAAAATAGGAGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079405.15 |
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| 3UTR-3UTR GCA 90 bp | TGGCTCTGTTGCTTCAGGATTTCTCCATTGTTTTTATCATGGAAGCATCCCCAAAAGGGAACCATGCTGTaGTTGGAAAAATACAGAGTT | + |
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Preference number: 2 (lower is better) Translates to: WLCCFRISPLFLSWKHPQKGTML*LEKYRV Trigger: AACTCTGTATTTTTCCAAGCACAGCATGGTTCCCTT...TTGGGGATGCTTCCATGATAAAAACAATGGAGAAATCCTGAAGCAACAGAGCCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000079405.15 |
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| 3UTR CCA 72 bp | AGTATTAATAAGCTGGAAACCGTGTGTGTGTGTGTGTaGGTGGGGGCGTATCAGGGCTCAAACTCAGGGACT | + |
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Preference number: 3 (lower is better) Translates to: SINKLETVCVCV*VGAYQGSNSGT Trigger: AGTCCCTGAGTTTGAGCCCTGATACGCCCCCACCCACACACACACACACACGGTTTCCAGCTTATTAATACT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000079405.15 ENSMUST00000172088.8 |
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| 3UTR-3UTR CAA 90 bp | TCCCCACGTACTGTTTCTCCTCTTCCACTGGATCATCTATTCTCCGTAGCACCCGGAACCATGCTGTGCTaGGAAAAATACAGAGTTCTT | + |
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Preference number: 3 (lower is better) Translates to: SPRTVSPLPLDHLFSVAPGTMLC*EKYRVL Trigger: AAGAACTCTGTATTTTTCCAAGCACAGCATGGTTCC...GGGTGCTACGGAGAATAGATGATCCAGTGGAAGAGGAGAAACAGTACGTGGGGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079405.15 |
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| 3UTR-3UTR CAA 90 bp | CCCACGTACTGTTTCTCCTCTTCCACTGGATCATCTATTCTCCGTAGCACCCAAGTTTACTCTCCTATTTaGGCTCTGTTGCTTCAGGAT | + |
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Preference number: 3 (lower is better) Translates to: PTYCFSSSTGSSILRSTQVYSPI*ALLLQD Trigger: ATCCTGAAGCAACAGAGCCAAAATAGGAGAGTAAAC...TTGGGTGCTACGGAGAATAGATGATCCAGTGGAAGAGGAGAAACAGTACGTGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079405.15 |
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| 3UTR CCA 72 bp | CAGCCACATGGTTCCCATGTTTTTGACACCTCTGATTaGCTGCCACATATTCTTCACATTTCTGAAGCCTCT | + |
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Preference number: 3 (lower is better) Translates to: QPHGSHVFDTSD*LPHILHISEAS Trigger: AGAGGCTTCAGAAATGTGAAGAATATGTGGCAGCCAATCAGAGGTGTCAAAAACATGGGAACCATGTGGCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000079405.15 |
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| 3UTR TCA 72 bp | CAGGGACTGATACATGCTAGGCAAGCATGCTACCTCTaGTATGCACACTCGGTCGTGAAAAATATTTATCTT | + |
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Preference number: 3 (lower is better) Translates to: QGLIHARQACYL*YAHSVVKNIYL Trigger: AAGATAAATATTTTTCACGACCGAGTGTGCATATCAGAGGTAGCATGCTTGCCTAGCATGTATCAGTCCCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000079405.15 ENSMUST00000172088.8 |
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| 3UTR TCA 72 bp | GCACACACCAGCACAACACACATACCCCTCTCTGCATaGACACACATTCCTAACATGCACAAAGTATTAATA | + |
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Preference number: 3 (lower is better) Translates to: AHTSTTHIPLSA*THIPNMHKVLI Trigger: TATTAATACTTTGTGCATGTTAGGAATGTGTGTTCATGCAGAGAGGGGTATGTGTGTTGTGCTGGTGTGTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079405.15 ENSMUST00000172088.8 |
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| 3UTR TCA 72 bp | AACACTGGCAGAATTGCATTATACACTCTACCCATATaGGAAACCAGAGTAACCCATTCACTGTATAACATA | + |
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Preference number: 3 (lower is better) Translates to: NTGRIALYTLPI*ETRVTHSLYNI Trigger: TATGTTATACAGTGAATGGGTTACTCTGGTTTCTCATATGGGTAGAGTGTATAATGCAATTCTGCCAGTGTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079405.15 ENSMUST00000172088.8 |
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| CDS-3UTR GCA 90 bp | GGAAACCGTGTGTGTGTGTGTGTGGGTGGGGGCGTATCAGGGCTCAAACTCAGGTCTCTCCCGTGTGGGTaGACCGGTGGATGTGGAGGT | + |
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Preference number: 4 (lower is better) Translates to: GNRVCVCVGGGVSGLKLRSLPCG*TGGCGG Trigger: ACCTCCACATCCACCGGTGCACCCACACGGGAGAGA...CCTGAGTTTGAGCCCTGATACGCCCCCACCCACACACACACACACACGGTTTCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000079405.15 ENSMUST00000172088.8 |
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| CDS-3UTR CCA 90 bp | AACCGTGTGTGTGTGTGTGTGGGTGGGGGCGTATCAGGGCTCAAACTCAGGGACGTGTGGGTGCACCGGTaGATGTGGAGGTTCGAGCTC | + |
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Preference number: 4 (lower is better) Translates to: NRVCVCVGGGVSGLKLRDVWVHR*MWRFEL Trigger: GAGCTCGAACCTCCACATCCACCGGTGCACCCACAC...GTCCCTGAGTTTGAGCCCTGATACGCCCCCACCCACACACACACACACACGGTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000079405.15 ENSMUST00000172088.8 |
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| CDS-3UTR TCA 90 bp | AGCTGGAAACCGTGTGTGTGTGTGTGTGGGTGGGGGCGTATCAGGGCTCAAACTGTGGATGTGGAGCTTTaGGCTCTGGCTGAAGCCCTT | + |
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Preference number: 4 (lower is better) Translates to: SWKPCVCVCGWGRIRAQTVDVEL*ALAEAL Trigger: AAGGGCTTCAGCCAGAGCTCAAAGCTCCACATCCAC...AGTTTGAGCCCTGATACGCCCCCACCCACACACACACACACACGGTTTCCAGCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000079405.15 ENSMUST00000172088.8 |
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| CDS-3UTR CCA 90 bp | AGCTGGAAACCGTGTGTGTGTGTGTGTGGGTGGGGGCGTATCAGGGCTCAAACTTGGAGGTTCGAGCTCTaGCTGAAGCCTTTTCCGCAC | + |
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Preference number: 4 (lower is better) Translates to: SWKPCVCVCGWGRIRAQTWRFEL*LKPFPH Trigger: GTGCGGAAAAGGCTTCAGCCAGAGCTCGAACCTCCA...AGTTTGAGCCCTGATACGCCCCCACCCACACACACACACACACGGTTTCCAGCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000079405.15 ENSMUST00000172088.8 |
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| CDS-3UTR CCA 90 bp | GCTGGAAACCGTGTGTGTGTGTGTGTGGGTGGGGGCGTATCAGGGCTCAAACTCACTCTCTTGTGGATGTaGAGCTTTGAGCTCTGGCTG | + |
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Preference number: 4 (lower is better) Translates to: AGNRVCVCVGGGVSGLKLTLLWM*SFELWL Trigger: CAGCCAGAGCTCAAAGCTCCACATCCACAAGAGAGT...GAGTTTGAGCCCTGATACGCCCCCACCCACACACACACACACACGGTTTCCAGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000079405.15 ENSMUST00000172088.8 |
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| CDS-3UTR CCA 90 bp | AACCGTGTGTGTGTGTGTGTGGGTGGGGGCGTATCAGGGCTCAAACTCAGGGACACTCTCTTGTGGATGTaGAGCTTTGAGCTCTGGCTG | + |
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Preference number: 4 (lower is better) Translates to: NRVCVCVGGGVSGLKLRDTLLWM*SFELWL Trigger: CAGCCAGAGCTCAAAGCTCCACATCCACAAGAGAGT...GTCCCTGAGTTTGAGCCCTGATACGCCCCCACCCACACACACACACACACGGTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000079405.15 ENSMUST00000172088.8 |
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| CDS-3UTR CCA 90 bp | GCTGCCAGAGAGGAGGGACTGAGTGGACTTTCCACCATAGTAGTATGTGGGGAGGTGTGGACACGTTGGTaGATGTGCAGGTTGGATCGC | + |
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Preference number: 4 (lower is better) Translates to: AAREEGLSGLSTIVVCGEVWTRW*MCRLDR Trigger: GCGATCCAACCTGCACATCCACCAACGTGTCCACAC...CTCCCCACATACTACTATGGTGGAAAGTCCACTCAGTCCCTCCTCTCTGGCAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079405.15 |
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| CDS-3UTR TCA 90 bp | TCCCCCACCCCACCCTCAAATGAACACATTGGACGGTCACAGTTTAAAGAGAGCGACTCGAGCTCCTGGTaGAACCCTTCCCGCACTTGT | + |
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Preference number: 4 (lower is better) Translates to: SPTPPSNEHIGRSQFKESDSSSW*NPSRTC Trigger: ACAAGTGCGGGAAGGGTTTCACCAGGAGCTCGAGTC...GCTCTCTTTAAACTGTGACCGTCCAATGTGTTCATTTGAGGGTGGGGTGGGGGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079405.15 |
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| CDS-3UTR TCA 90 bp | GATCCATGGGACTCTGGCCTGGCTTACTTGGTGACATTACACACCATGTGTGACGACTCGAGCTCCTGGTaGAACCCTTCCCGCACTTGT | + |
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Preference number: 4 (lower is better) Translates to: DPWDSGLAYLVTLHTMCDDSSSW*NPSRTC Trigger: ACAAGTGCGGGAAGGGTTTCACCAGGAGCTCGAGTC...GTCACACATGGTGTGTAATGTCACCAAGTAAGCCAGGCCAGAGTCCCATGGATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079405.15 ENSMUST00000172088.8 |
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| CDS-3UTR CCA 90 bp | CACAAAGTATTAATAAGCTGGAAACCGTGTGTGTGTGTGTGTGGGTGGGGGCGTGTGTGGACACGTTGGTaGATGTGCAGGTTGGATCGC | + |
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Preference number: 4 (lower is better) Translates to: HKVLISWKPCVCVCGWGRVWTRW*MCRLDR Trigger: GCGATCCAACCTGCACATCCACCAACGTGTCCACAC...ACGCCCCCACCCACACACACACACACACGGTTTCCAGCTTATTAATACTTTGTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000079405.15 ENSMUST00000172088.8 |
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| CDS-3UTR GCA 90 bp | AGTCTTAGTATGGTTTCAGAGCCTCTGATTGACAGCCACATGGTTCCCATGTTTTCTCTCCCGTGTGGGTaGACCGGTGGATGTGGAGGT | + |
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Preference number: 4 (lower is better) Translates to: SLSMVSEPLIDSHMVPMFSLPCG*TGGCGG Trigger: ACCTCCACATCCACCGGTGCACCCACACGGGAGAGA...AAACATGGGAACCATGTGGCTGTCAATCAGAGGCTCTGAAACCATACTAAGACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079405.15 |
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| CDS-3UTR TCA 90 bp | CCTAACATGCACAAAGTATTAATAAGCTGGAAACCGTGTGTGTGTGTGTGTGGGGTGGATGTGGAGCTTTaGGCTCTGGCTGAAGCCCTT | + |
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Preference number: 4 (lower is better) Translates to: PNMHKVLISWKPCVCVCGVDVEL*ALAEAL Trigger: AAGGGCTTCAGCCAGAGCTCAAAGCTCCACATCCAC...CCCACACACACACACACACGGTTTCCAGCTTATTAATACTTTGTGCATGTTAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079405.15 ENSMUST00000172088.8 |
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| 3UTR CAA 72 bp | AGACAGTTAGATCCATGGGACTCTGGCCTGGCTTACTaGGTGACATTACACACCATGTGTGACAGACAGATG | + |
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Preference number: 4 (lower is better) Translates to: RQLDPWDSGLAY*VTLHTMCDRQM Trigger: CATCTGTCTGTCACACATGGTGTGTAATGTCACCAAGTAAGCCAGGCCAGAGTCCCATGGATCTAACTGTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079405.15 ENSMUST00000172088.8 |
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| CDS-3UTR CCA 90 bp | TCTCCTATTTTGGCTCTGTTGCTTCAGGATTTCTCCATTGTTTTTATCATGGAAGTGTGGGTGCACCGGTaGATGTGGAGGTTCGAGCTC | + |
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Preference number: 4 (lower is better) Translates to: SPILALLLQDFSIVFIMEVWVHR*MWRFEL Trigger: GAGCTCGAACCTCCACATCCACCGGTGCACCCACAC...TTCCATGATAAAAACAATGGAGAAATCCTGAAGCAACAGAGCCAAAATAGGAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079405.15 |
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| 3UTR CAA 72 bp | GAGCCTCTGATTGACAGCCACATGGTTCCCATGTTTTaGACACCTCTGATTGGCTGCCACATATTCTTCACA | + |
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Preference number: 4 (lower is better) Translates to: EPLIDSHMVPMF*TPLIGCHIFFT Trigger: TGTGAAGAATATGTGGCAGCCAATCAGAGGTGTCAAAAACATGGGAACCATGTGGCTGTCAATCAGAGGCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079405.15 |
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