RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZFP217 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000052056

Ensembl transcript IDs: ENSMUST00000063710.13, ENSMUST00000109155.8

Found 347 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TGGGAAACAAACAATGGAGAGGCCCAGGCGTCTTCTCTCCCTGCCTaGCAGGAGGGCTCAGCCAGCAGCAACTCACCCAGACTCAAGGTG +
Preference number: 1 (lower is better)
Translates to: WETNNGEAQASSLPA*QEGSASSNSPRLKV
Trigger: CACCTTGAGTCTGGGTGAGTTGCTGCTGGCTGAGCCCTCCTGGCAGGCAGGGAGAGAAGACGCCTGGGCCTCTCCATTGTTTGTTTCCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
3UTR TCA 90 bp GCTAGTTGGTGGCTGTCCTCCCTCCATCTCGAGCTGCCTGTGCACTaGGGAAATCACCCTGGGAAACAAACAATGGAGAGGCCCAGGCGT +
Preference number: 1 (lower is better)
Translates to: ASWWLSSLHLELPVH*GNHPGKQTMERPRR
Trigger: ACGCCTGGGCCTCTCCATTGTTTGTTTCCCAGGGTGATTTCCTCAGTGCACAGGCAGCTCGAGATGGAGGGAGGACAGCCACCAACTAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
3UTR GCA 90 bp GGTACAAAGGTTAACAGAACGTTAGAGAATGTAGTGTTCCTTCTCTaGTCCTCTCAGGTCTATGTACAGTTCAGTCACAGCTTGTTCAGT +
Preference number: 1 (lower is better)
Translates to: GTKVNRTLENVVFLL*SSQVYVQFSHSLFS
Trigger: ACTGAACAAGCTGTGACTGAACTGTACATAGACCTGAGAGGAGCAGAGAAGGAACACTACATTCTCTAACGTTCTGTTAACCTTTGTACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
3UTR GCA 90 bp CCAAATACAAACGATTTCCCTAAGCTTTCCACTCCCTTTAAAAATTaGTTCCAAGCACGCAATTCACACAAGGAGATATGGCAACTCTCC +
Preference number: 1 (lower is better)
Translates to: PNTNDFPKLSTPFKN*FQARNSHKEIWQLS
Trigger: GGAGAGTTGCCATATCTCCTTGTGTGAATTGCGTGCTTGGAAGCAATTTTTAAAGGGAGTGGAAAGCTTAGGGAAATCGTTTGTATTTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
3UTR-3UTR CCA 90 bp AGCTTATGTACATATGGCTCAGCTTGTGGACGGGAACAGGGCCTAGTGTACATGGCTCCCCATGGAGCCTaGCTCTCTGTGACATCGGCC +
Preference number: 2 (lower is better)
Translates to: SLCTYGSACGREQGLVYMAPHGA*LSVTSA
Trigger: GGCCGATGTCACAGAGAGCCAGGCTCCATGGGGAGC...CATGTACACTAGGCCCTGTTCCCGTCCACAAGCTGAGCCATATGTACATAAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
3UTR-3UTR CCA 90 bp GGTCTCCATTCAACACAAGAGGTAAGACATTTCCCAAGGACCCCTCATGGTACACCCCAGGCAGCAAGCTaGGGCTCCAGGACACCTGTA +
Preference number: 2 (lower is better)
Translates to: GLHSTQEVRHFPRTPHGTPQAAS*GSRTPV
Trigger: TACAGGTGTCCTGGAGCCCCAGCTTGCTGCCTGGGG...TGTACCATGAGGGGTCCTTGGGAAATGTCTTACCTCTTGTGTTGAATGGAGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
3UTR-3UTR GCA 90 bp AAAAGATCTTCCTACAAGAGCAGACACATCTCAACCCAGGTCTCCATTCAACACGGCGTCTTCTCTCCCTaGCTGCCAGGAGGGCTCAGC +
Preference number: 2 (lower is better)
Translates to: KRSSYKSRHISTQVSIQHGVFSP*LPGGLS
Trigger: GCTGAGCCCTCCTGGCAGGCAGGGAGAGAAGACGCC...GTGTTGAATGGAGACCTGGGTTGAGATGTGTCTGCTCTTGTAGGAAGATCTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
3UTR-3UTR GCA 90 bp GTCCTCCCTCCATCTCGAGCTGCCTGTGCACTGAGGAAATCACCCTGGGAAACAGTAGTGTTCCTTCTCTaGTCCTCTCAGGTCTATGTA +
Preference number: 2 (lower is better)
Translates to: VLPPSRAACALRKSPWETVVFLL*SSQVYV
Trigger: TACATAGACCTGAGAGGAGCAGAGAAGGAACACTAC...TGTTTCCCAGGGTGATTTCCTCAGTGCACAGGCAGCTCGAGATGGAGGGAGGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
3UTR-3UTR TCA 90 bp TGGCAACTCTCCGAGACACCCAATCTTCCAAAAGAAAAGAACTTAGATGGCTCCCAGGTTAGTGCCTGCTaGCCTCAAGATGCACAGCAC +
Preference number: 2 (lower is better)
Translates to: WQLSETPNLPKEKNLDGSQVSAC*PQDAQH
Trigger: GTGCTGTGCATCTTGAGGTCAGCAGGCACTAACCTG...GGAGCCATCTAAGTTCTTTTCTTTTGGAAGATTGGGTGTCTCGGAGAGTTGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
3UTR-3UTR GCA 90 bp CCAGGTCTCCATTCAACACAAGAGGTAAGACATTTCCCAAGGACCCCTCATGGTGTGGAAGTGTGTACTTaGATCCAGGGACCTTTTCCC +
Preference number: 2 (lower is better)
Translates to: PGLHSTQEVRHFPRTPHGVEVCT*IQGPFP
Trigger: GGGAAAAGGTCCCTGGATGCAAGTACACACTTCCAC...ACCATGAGGGGTCCTTGGGAAATGTCTTACCTCTTGTGTTGAATGGAGACCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
3UTR-3UTR GCA 90 bp GTCCTCCCTCCATCTCGAGCTGCCTGTGCACTGAGGAAATCACCCTGGGAAACAACTCCCTTTAAAAATTaGTTCCAAGCACGCAATTCA +
Preference number: 2 (lower is better)
Translates to: VLPPSRAACALRKSPWETTPFKN*FQARNS
Trigger: TGAATTGCGTGCTTGGAAGCAATTTTTAAAGGGAGT...TGTTTCCCAGGGTGATTTCCTCAGTGCACAGGCAGCTCGAGATGGAGGGAGGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
3UTR-3UTR CCA 90 bp AGCTTATGTACATATGGCTCAGCTTGTGGACGGGAACAGGGCCTAGTGTACATGTCTAGCTCTACCAGCTaGAGTAAAAGGTGCCAGGTT +
Preference number: 2 (lower is better)
Translates to: SLCTYGSACGREQGLVYMSSSTS*SKRCQV
Trigger: AACCTGGCACCTTTTACTCCAGCTGGTAGAGCTAGA...CATGTACACTAGGCCCTGTTCCCGTCCACAAGCTGAGCCATATGTACATAAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
3UTR-3UTR TCA 90 bp TCTCGAGAACGAGCTTCCTGTACACTCACTGCATTTAGGCAAAGATGGTGTCAACCACCCTACCCCAAATaGTTTCTTTTCAGCAGCGCT +
Preference number: 2 (lower is better)
Translates to: SRERASCTLTAFRQRWCQPPYPK*FLFSSA
Trigger: AGCGCTGCTGAAAAGAAATCATTTGGGGTAGGGTGG...TTGACACCATCTTTGCCTAAATGCAGTGAGTGTACAGGAAGCTCGTTCTCGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
3UTR-3UTR GCA 90 bp TCTCGAGAACGAGCTTCCTGTACACTCACTGCATTTAGGCAAAGATGGTGTCAAGTGGAAGTGTGTACTTaGATCCAGGGACCTTTTCCC +
Preference number: 2 (lower is better)
Translates to: SRERASCTLTAFRQRWCQVEVCT*IQGPFP
Trigger: GGGAAAAGGTCCCTGGATGCAAGTACACACTTCCAC...TTGACACCATCTTTGCCTAAATGCAGTGAGTGTACAGGAAGCTCGTTCTCGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
3UTR-3UTR GCA 90 bp AGCTTATGTACATATGGCTCAGCTTGTGGACGGGAACAGGGCCTAGTGTACATGTACAGTTACCTGAGGTaGAAGCTTTACAACATCCCC +
Preference number: 2 (lower is better)
Translates to: SLCTYGSACGREQGLVYMYSYLR*KLYNIP
Trigger: GGGGATGTTGTAAAGCTTGCACCTCAGGTAACTGTA...CATGTACACTAGGCCCTGTTCCCGTCCACAAGCTGAGCCATATGTACATAAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
3UTR-3UTR CCA 90 bp AAGACTCCAAATACAAACGATTTCCCTAAGCTTTCCACTCCCTTTAAAAATTGCGCTCCCCATGGAGCCTaGCTCTCTGTGACATCGGCC +
Preference number: 2 (lower is better)
Translates to: KTPNTNDFPKLSTPFKNCAPHGA*LSVTSA
Trigger: GGCCGATGTCACAGAGAGCCAGGCTCCATGGGGAGC...GCAATTTTTAAAGGGAGTGGAAAGCTTAGGGAAATCGTTTGTATTTGGAGTCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
3UTR-3UTR CCA 90 bp CTAAGAAAACAGTCTAGCTTATGTACATATGGCTCAGCTTGTGGACGGGAACAGCTGGGAAACAAACAATaGAGAGGCCCAGGCGTCTTC +
Preference number: 2 (lower is better)
Translates to: LRKQSSLCTYGSACGREQLGNKQ*RGPGVF
Trigger: GAAGACGCCTGGGCCTCTCCATTGTTTGTTTCCCAG...CTGTTCCCGTCCACAAGCTGAGCCATATGTACATAAGCTAGACTGTTTTCTTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
3UTR-3UTR CCA 90 bp AGCTTATGTACATATGGCTCAGCTTGTGGACGGGAACAGGGCCTAGTGTACATGCAATGTATGATTCCGTaGAAGTGTGTACTTGCATCC +
Preference number: 2 (lower is better)
Translates to: SLCTYGSACGREQGLVYMQCMIP*KCVLAS
Trigger: GGATGCAAGTACACACTTCCACGGAATCATACATTG...CATGTACACTAGGCCCTGTTCCCGTCCACAAGCTGAGCCATATGTACATAAGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
3UTR-3UTR CCA 90 bp TCTCGAGAACGAGCTTCCTGTACACTCACTGCATTTAGGCAAAGATGGTGTCAATCTAGCTCTACCAGCTaGAGTAAAAGGTGCCAGGTT +
Preference number: 2 (lower is better)
Translates to: SRERASCTLTAFRQRWCQSSSTS*SKRCQV
Trigger: AACCTGGCACCTTTTACTCCAGCTGGTAGAGCTAGA...TTGACACCATCTTTGCCTAAATGCAGTGAGTGTACAGGAAGCTCGTTCTCGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
3UTR-3UTR TCA 90 bp CTAAGAAAACAGTCTAGCTTATGTACATATGGCTCAGCTTGTGGACGGGAACAGTGCACAGCACATCACTaGGTGTCAACATTTCGTTCC +
Preference number: 2 (lower is better)
Translates to: LRKQSSLCTYGSACGREQCTAHH*VSTFRS
Trigger: GGAACGAAATGTTGACACTCAGTGATGTGCTGTGCA...CTGTTCCCGTCCACAAGCTGAGCCATATGTACATAAGCTAGACTGTTTTCTTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
3UTR-3UTR TCA 90 bp CTCCAAATACAAACGATTTCCCTAAGCTTTCCACTCCCTTTAAAAATTGCTTCCCAGGTTAGTGCCTGCTaGCCTCAAGATGCACAGCAC +
Preference number: 2 (lower is better)
Translates to: LQIQTISLSFPLPLKIASQVSAC*PQDAQH
Trigger: GTGCTGTGCATCTTGAGGTCAGCAGGCACTAACCTG...GGAAGCAATTTTTAAAGGGAGTGGAAAGCTTAGGGAAATCGTTTGTATTTGGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
3UTR-3UTR GCA 90 bp AAAAGATCTTCCTACAAGAGCAGACACATCTCAACCCAGGTCTCCATTCAACACGTAGTGTTCCTTCTCTaGTCCTCTCAGGTCTATGTA +
Preference number: 2 (lower is better)
Translates to: KRSSYKSRHISTQVSIQHVVFLL*SSQVYV
Trigger: TACATAGACCTGAGAGGAGCAGAGAAGGAACACTAC...GTGTTGAATGGAGACCTGGGTTGAGATGTGTCTGCTCTTGTAGGAAGATCTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
3UTR-3UTR GCA 90 bp CCAGGTCTCCATTCAACACAAGAGGTAAGACATTTCCCAAGGACCCCTCATGGTCCCACTCGTTTTTATTaGTATTTGGTACAAAGGTTA +
Preference number: 2 (lower is better)
Translates to: PGLHSTQEVRHFPRTPHGPTRFY*YLVQRL
Trigger: TAACCTTTGTACCAAATAGCAATAAAAACGAGTGGG...ACCATGAGGGGTCCTTGGGAAATGTCTTACCTCTTGTGTTGAATGGAGACCTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
3UTR-3UTR GCA 90 bp GGTCTCCATTCAACACAAGAGGTAAGACATTTCCCAAGGACCCCTCATGGTACAACTCCCTTTAAAAATTaGTTCCAAGCACGCAATTCA +
Preference number: 2 (lower is better)
Translates to: GLHSTQEVRHFPRTPHGTTPFKN*FQARNS
Trigger: TGAATTGCGTGCTTGGAAGCAATTTTTAAAGGGAGT...TGTACCATGAGGGGTCCTTGGGAAATGTCTTACCTCTTGTGTTGAATGGAGACC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
3UTR-3UTR CCA 90 bp AAAAGATCTTCCTACAAGAGCAGACACATCTCAACCCAGGTCTCCATTCAACACCAATGTATGATTCCGTaGAAGTGTGTACTTGCATCC +
Preference number: 2 (lower is better)
Translates to: KRSSYKSRHISTQVSIQHQCMIP*KCVLAS
Trigger: GGATGCAAGTACACACTTCCACGGAATCATACATTG...GTGTTGAATGGAGACCTGGGTTGAGATGTGTCTGCTCTTGTAGGAAGATCTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
3UTR GCA 72 bp AACAATGGAGAGGCCCAGGCGTCTTCTCTCCCTGCCTaGCAGGAGGGCTCAGCCAGCAGCAACTCACCCAGA +
Preference number: 3 (lower is better)
Translates to: NNGEAQASSLPA*QEGSASSNSPR
Trigger: TCTGGGTGAGTTGCTGCTGGCTGAGCCCTCCTGGCAGGCAGGGAGAGAAGACGCCTGGGCCTCTCCATTGTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
3UTR GCA 72 bp AACAAACAATGGAGAGGCCCAGGCGTCTTCTCTCCCTaGCTGCCAGGAGGGCTCAGCCAGCAGCAACTCACC +
Preference number: 3 (lower is better)
Translates to: NKQWRGPGVFSP*LPGGLSQQQLT
Trigger: GGTGAGTTGCTGCTGGCTGAGCCCTCCTGGCAGGCAGGGAGAGAAGACGCCTGGGCCTCTCCATTGTTTGTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
3UTR TCA 72 bp GAACTTAGATGGCTCCCCATGGAGCCTGGCTCTCTGTaGCATCGGCCACTCTACAGAGGCAGCTTCTCTGTA +
Preference number: 3 (lower is better)
Translates to: ELRWLPMEPGSL*HRPLYRGSFSV
Trigger: TACAGAGAAGCTGCCTCTGTAGAGTGGCCGATGTCACAGAGAGCCAGGCTCCATGGGGAGCCATCTAAGTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
3UTR TCA 72 bp TGGCTGTCCTCCCTCCATCTCGAGCTGCCTGTGCACTaGGGAAATCACCCTGGGAAACAAACAATGGAGAGG +
Preference number: 3 (lower is better)
Translates to: WLSSLHLELPVH*GNHPGKQTMER
Trigger: CCTCTCCATTGTTTGTTTCCCAGGGTGATTTCCTCAGTGCACAGGCAGCTCGAGATGGAGGGAGGACAGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
3UTR GCA 72 bp GTTGGTGGCTGTCCTCCCTCCATCTCGAGCTGCCTGTaGACTGAGGAAATCACCCTGGGAAACAAACAATGG +
Preference number: 3 (lower is better)
Translates to: VGGCPPSISSCL*TEEITLGNKQW
Trigger: CCATTGTTTGTTTCCCAGGGTGATTTCCTCAGTGCACAGGCAGCTCGAGATGGAGGGAGGACAGCCACCAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
3UTR CCA 72 bp CCATCTCGAGCTGCCTGTGCACTGAGGAAATCACCCTaGGAAACAAACAATGGAGAGGCCCAGGCGTCTTCT +
Preference number: 3 (lower is better)
Translates to: PSRAACALRKSP*ETNNGEAQASS
Trigger: AGAAGACGCCTGGGCCTCTCCATTGTTTGTTTCCCAGGGTGATTTCCTCAGTGCACAGGCAGCTCGAGATGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
3UTR GCA 72 bp CAAGTTTACCACGTCGGTATTTACAGTTACCTGAGGTaGAAGCTTTACAACATCCCCTGCCCACCCCACCCC +
Preference number: 3 (lower is better)
Translates to: QVYHVGIYSYLR*KLYNIPCPPHP
Trigger: GGGGTGGGGTGGGCAGGGGATGTTGTAAAGCTTGCACCTCAGGTAACTGTAAATACCGACGTGGTAAACTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
3UTR CCA 72 bp GTGCGCTCTCAGAAGATGAACCAATGTATGATTCCGTaGAAGTGTGTACTTGCATCCAGGGACCTTTTCCCC +
Preference number: 3 (lower is better)
Translates to: VRSQKMNQCMIP*KCVLASRDLFP
Trigger: GGGGAAAAGGTCCCTGGATGCAAGTACACACTTCCACGGAATCATACATTGGTTCATCTTCTGAGAGCGCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
3UTR-3UTR CAA 90 bp CCAGGTCTCCATTCAACACAAGAGGTAAGACATTTCCCAAGGACCCCTCATGGTCAGTTCAGTCACAGCTaGTTCAGTAGCTATTGTGCG +
Preference number: 3 (lower is better)
Translates to: PGLHSTQEVRHFPRTPHGQFSHS*FSSYCA
Trigger: CGCACAATAGCTACTGAACAAGCTGTGACTGAACTG...ACCATGAGGGGTCCTTGGGAAATGTCTTACCTCTTGTGTTGAATGGAGACCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
3UTR-3UTR CAA 90 bp TGGCAACTCTCCGAGACACCCAATCTTCCAAAAGAAAAGAACTTAGATGGCTCCCAGTTCAGTCACAGCTaGTTCAGTAGCTATTGTGCG +
Preference number: 3 (lower is better)
Translates to: WQLSETPNLPKEKNLDGSQFSHS*FSSYCA
Trigger: CGCACAATAGCTACTGAACAAGCTGTGACTGAACTG...GGAGCCATCTAAGTTCTTTTCTTTTGGAAGATTGGGTGTCTCGGAGAGTTGCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
3UTR-3UTR CAA 90 bp GGTCTCCATTCAACACAAGAGGTAAGACATTTCCCAAGGACCCCTCATGGTACATCCCACTCGTTTTTATaGCTATTTGGTACAAAGGTT +
Preference number: 3 (lower is better)
Translates to: GLHSTQEVRHFPRTPHGTSHSFL*LFGTKV
Trigger: AACCTTTGTACCAAATAGCAATAAAAACGAGTGGGA...TGTACCATGAGGGGTCCTTGGGAAATGTCTTACCTCTTGTGTTGAATGGAGACC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
3UTR-3UTR CAA 90 bp CTAAGAAAACAGTCTAGCTTATGTACATATGGCTCAGCTTGTGGACGGGAACAGTCCCACTCGTTTTTATaGCTATTTGGTACAAAGGTT +
Preference number: 3 (lower is better)
Translates to: LRKQSSLCTYGSACGREQSHSFL*LFGTKV
Trigger: AACCTTTGTACCAAATAGCAATAAAAACGAGTGGGA...CTGTTCCCGTCCACAAGCTGAGCCATATGTACATAAGCTAGACTGTTTTCTTAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
3UTR TCA 72 bp ATCACTGAGTGTCAACATTTCGTTCCATCAGCAATGTaGAGACAAACAATAGACTCAGTGAGAATATGCTTT +
Preference number: 3 (lower is better)
Translates to: ITECQHFVPSAM*RQTIDSVRICF
Trigger: AAAGCATATTCTCACTGAGTCTATTGTTTGTCTTCACATTGCTGATGGAACGAAATGTTGACACTCAGTGAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp GGCTGTCCTCCCTCCATCTCGAGCTGCCTGTGCACTGAGGAAATCACCCTGGGAAGGAAACGGGCTTTGTaGGGCAGCACAGGCGGTGGG +
Preference number: 4 (lower is better)
Translates to: GCPPSISSCLCTEEITLGRKRAL*GSTGGG
Trigger: CCCACCGCCTGTGCTGCCCCACAAAGCCCGTTTCCT...TCCCAGGGTGATTTCCTCAGTGCACAGGCAGCTCGAGATGGAGGGAGGACAGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp GGCTGTCCTCCCTCCATCTCGAGCTGCCTGTGCACTGAGGAAATCACCCTGGGAGAGCAGGTCCCAGGCTaGCTTGCATCCACAGCCATG +
Preference number: 4 (lower is better)
Translates to: GCPPSISSCLCTEEITLGEQVPG*LASTAM
Trigger: CATGGCTGTGGATGCAAGGCAGCCTGGGACCTGCTC...TCCCAGGGTGATTTCCTCAGTGCACAGGCAGCTCGAGATGGAGGGAGGACAGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp GGCTGTCCTCCCTCCATCTCGAGCTGCCTGTGCACTGAGGAAATCACCCTGGGACAACCCCCTCTAGTCTaGAGACAGGGCTGCTGGCCT +
Preference number: 4 (lower is better)
Translates to: GCPPSISSCLCTEEITLGQPPLV*RQGCWP
Trigger: AGGCCAGCAGCCCTGTCTGCAGACTAGAGGGGGTTG...TCCCAGGGTGATTTCCTCAGTGCACAGGCAGCTCGAGATGGAGGGAGGACAGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp GGCTGTCCTCCCTCCATCTCGAGCTGCCTGTGCACTGAGGAAATCACCCTGGGACTTTCCTTCAAGGGCTaGGCTGCCTCCTGCGTGTCC +
Preference number: 4 (lower is better)
Translates to: GCPPSISSCLCTEEITLGLSFKG*AASCVS
Trigger: GGACACGCAGGAGGCAGCCCAGCCCTTGAAGGAAAG...TCCCAGGGTGATTTCCTCAGTGCACAGGCAGCTCGAGATGGAGGGAGGACAGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR TCA 90 bp GTCCTCCCTCCATCTCGAGCTGCCTGTGCACTGAGGAAATCACCCTGGGAAACACTTCCAGAGTGGTGCTaGGGTCTGGGGAGCAGGTCC +
Preference number: 4 (lower is better)
Translates to: VLPPSRAACALRKSPWETLPEWC*GLGSRS
Trigger: GGACCTGCTCCCCAGACCTCAGCACCACTCTGGAAG...TGTTTCCCAGGGTGATTTCCTCAGTGCACAGGCAGCTCGAGATGGAGGGAGGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp GGCTGTCCTCCCTCCATCTCGAGCTGCCTGTGCACTGAGGAAATCACCCTGGGAGGCATCTCCTTAAGCTaGTTGGCAGGTGGGCTTCCC +
Preference number: 4 (lower is better)
Translates to: GCPPSISSCLCTEEITLGGISLS*LAGGLP
Trigger: GGGAAGCCCACCTGCCAAGCAGCTTAAGGAGATGCC...TCCCAGGGTGATTTCCTCAGTGCACAGGCAGCTCGAGATGGAGGGAGGACAGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp GTCCTCCCTCCATCTCGAGCTGCCTGTGCACTGAGGAAATCACCCTGGGAAACAAGGAAACGGGCTTTGTaGGGCAGCACAGGCGGTGGG +
Preference number: 4 (lower is better)
Translates to: VLPPSRAACALRKSPWETRKRAL*GSTGGG
Trigger: CCCACCGCCTGTGCTGCCCCACAAAGCCCGTTTCCT...TGTTTCCCAGGGTGATTTCCTCAGTGCACAGGCAGCTCGAGATGGAGGGAGGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR TCA 90 bp GTCCTCCCTCCATCTCGAGCTGCCTGTGCACTGAGGAAATCACCCTGGGAAACAACAGGGCTGCTGGCCTaGGGCTCCCCTGCTTTCTTT +
Preference number: 4 (lower is better)
Translates to: VLPPSRAACALRKSPWETTGLLA*GSPAFF
Trigger: AAAGAAAGCAGGGGAGCCTCAGGCCAGCAGCCCTGT...TGTTTCCCAGGGTGATTTCCTCAGTGCACAGGCAGCTCGAGATGGAGGGAGGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp GTCCTCCCTCCATCTCGAGCTGCCTGTGCACTGAGGAAATCACCCTGGGAAACATTGGCCTTGGGCTTGTaGAGGCCAGACAAGGGAGGG +
Preference number: 4 (lower is better)
Translates to: VLPPSRAACALRKSPWETLALGL*RPDKGG
Trigger: CCCTCCCTTGTCTGGCCTGCACAAGCCCAAGGCCAA...TGTTTCCCAGGGTGATTTCCTCAGTGCACAGGCAGCTCGAGATGGAGGGAGGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp GGCTGTCCTCCCTCCATCTCGAGCTGCCTGTGCACTGAGGAAATCACCCTGGGAAACAACTCTGACTGCTaGTGCCTGGTGGCACTGGTG +
Preference number: 4 (lower is better)
Translates to: GCPPSISSCLCTEEITLGNNSDC*CLVALV
Trigger: CACCAGTGCCACCAGGCAGCAGCAGTCAGAGTTGTT...TCCCAGGGTGATTTCCTCAGTGCACAGGCAGCTCGAGATGGAGGGAGGACAGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR TCA 90 bp GGCTGTCCTCCCTCCATCTCGAGCTGCCTGTGCACTGAGGAAATCACCCTGGGAGTTGCTGTGTGCTGGTaGGAGAACACTCTGGAAGAC +
Preference number: 4 (lower is better)
Translates to: GCPPSISSCLCTEEITLGVAVCW*ENTLED
Trigger: GTCTTCCAGAGTGTTCTCTCACCAGCACACAGCAAC...TCCCAGGGTGATTTCCTCAGTGCACAGGCAGCTCGAGATGGAGGGAGGACAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp GGCTGTCCTCCCTCCATCTCGAGCTGCCTGTGCACTGAGGAAATCACCCTGGGAGAAGCTTGCTCCTGGTaGCAGACTTGCCATTGTGTG +
Preference number: 4 (lower is better)
Translates to: GCPPSISSCLCTEEITLGEACSW*QTCHCV
Trigger: CACACAATGGCAAGTCTGGCACCAGGAGCAAGCTTC...TCCCAGGGTGATTTCCTCAGTGCACAGGCAGCTCGAGATGGAGGGAGGACAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp GTCCTCCCTCCATCTCGAGCTGCCTGTGCACTGAGGAAATCACCCTGGGAAACAGTCTCTCCCTTGCTGTaGCCATGGGCCGTCAACCTT +
Preference number: 4 (lower is better)
Translates to: VLPPSRAACALRKSPWETVSPLL*PWAVNL
Trigger: AAGGTTGACGGCCCATGGGCACAGCAAGGGAGAGAC...TGTTTCCCAGGGTGATTTCCTCAGTGCACAGGCAGCTCGAGATGGAGGGAGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp TGTACATATGGCTCAGCTTGTGGACGGGAACAGGGCCTAGTGTACATGTTCCTGCTTCAAGGGCTGGGCTaGCTCCTGCGTGTCCCACGG +
Preference number: 4 (lower is better)
Translates to: CTYGSACGREQGLVYMFLLQGLG*LLRVPR
Trigger: CCGTGGGACACGCAGGAGGCAGCCCAGCCCTTGAAG...CAGGAACATGTACACTAGGCCCTGTTCCCGTCCACAAGCTGAGCCATATGTACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp ATTTACAGTTACCTGAGGTGCAAGCTTTACAACATCCCCTGCCCACCCCACCCCCAATCCAGGGGCATGTaGCCCTCTGCCACGGCCATG +
Preference number: 4 (lower is better)
Translates to: IYSYLRCKLYNIPCPPHPQSRGM*PSATAM
Trigger: CATGGCCGTGGCAGAGGGCCACATGCCCCTGGATTG...GGGGTGGGGTGGGCAGGGGATGTTGTAAAGCTTGCACCTCAGGTAACTGTAAAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp CCAGGTCTCCATTCAACACAAGAGGTAAGACATTTCCCAAGGACCCCTCATGGTCTGGCTCGCAGAGGGTaGGCCGGTGCTGCAGCAGCA +
Preference number: 4 (lower is better)
Translates to: PGLHSTQEVRHFPRTPHGLARRG*AGAAAA
Trigger: TGCTGCTGCAGCACCGGCCCACCCTCTGCGAGCCAG...ACCATGAGGGGTCCTTGGGAAATGTCTTACCTCTTGTGTTGAATGGAGACCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp ATTTACAGTTACCTGAGGTGCAAGCTTTACAACATCCCCTGCCCACCCCACCCCAGTGGTGCTGAGGTCTaGGGAGCAGGTCCCAGGCTG +
Preference number: 4 (lower is better)
Translates to: IYSYLRCKLYNIPCPPHPSGAEV*GAGPRL
Trigger: CAGCCTGGGACCTGCTCCCCAGACCTCAGCACCACT...GGGGTGGGGTGGGCAGGGGATGTTGTAAAGCTTGCACCTCAGGTAACTGTAAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR TCA 90 bp GGCTGTCCTCCCTCCATCTCGAGCTGCCTGTGCACTGAGGAAATCACCCTGGGAGGCTGCTTGTCTTTGTaGTGTCTCTCCAAGTGGTAC +
Preference number: 4 (lower is better)
Translates to: GCPPSISSCLCTEEITLGGCLSL*CLSKWY
Trigger: GTACCACTTGGAGAGACATCACAAAGACAAGCAGCC...TCCCAGGGTGATTTCCTCAGTGCACAGGCAGCTCGAGATGGAGGGAGGACAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp GTCCTCCCTCCATCTCGAGCTGCCTGTGCACTGAGGAAATCACCCTGGGAAACAGCCACTGGGAATGTCTaGCCACACACATCACAGCTC +
Preference number: 4 (lower is better)
Translates to: VLPPSRAACALRKSPWETATGNV*PHTSQL
Trigger: GAGCTGTGATGTGTGTGGGCAGACATTCCCAGTGGC...TGTTTCCCAGGGTGATTTCCTCAGTGCACAGGCAGCTCGAGATGGAGGGAGGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp ATTTACAGTTACCTGAGGTGCAAGCTTTACAACATCCCCTGCCCACCCCACCCCATGCTCCCAGGGGCGTaGGGCTGGACCACTTCATTG +
Preference number: 4 (lower is better)
Translates to: IYSYLRCKLYNIPCPPHPMLPGA*GWTTSL
Trigger: CAATGAAGTGGTCCAGCCGCACGCCCCTGGGAGCAT...GGGGTGGGGTGGGCAGGGGATGTTGTAAAGCTTGCACCTCAGGTAACTGTAAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp GTCCTCCCTCCATCTCGAGCTGCCTGTGCACTGAGGAAATCACCCTGGGAAACACTTGCTCAAAGAGATTaGAGGACAGGCGTGGAGCGG +
Preference number: 4 (lower is better)
Translates to: VLPPSRAACALRKSPWETLAQRD*RTGVER
Trigger: CCGCTCCACGCCTGTCCTGCAATCTCTTTGAGCAAG...TGTTTCCCAGGGTGATTTCCTCAGTGCACAGGCAGCTCGAGATGGAGGGAGGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp AGCTTATGTACATATGGCTCAGCTTGTGGACGGGAACAGGGCCTAGTGTACATGCTTCAAGGGCTGGGCTaGCTCCTGCGTGTCCCACGG +
Preference number: 4 (lower is better)
Translates to: SLCTYGSACGREQGLVYMLQGLG*LLRVPR
Trigger: CCGTGGGACACGCAGGAGGCAGCCCAGCCCTTGAAG...CATGTACACTAGGCCCTGTTCCCGTCCACAAGCTGAGCCATATGTACATAAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp GTCCTCCCTCCATCTCGAGCTGCCTGTGCACTGAGGAAATCACCCTGGGAAACATTGCATCCACAGCCATaGTGGGTGACAGGGCATCAG +
Preference number: 4 (lower is better)
Translates to: VLPPSRAACALRKSPWETLHPQP*WVTGHQ
Trigger: CTGATGCCCTGTCACCCACCATGGCTGTGGATGCAA...TGTTTCCCAGGGTGATTTCCTCAGTGCACAGGCAGCTCGAGATGGAGGGAGGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR TCA 90 bp TGTACATATGGCTCAGCTTGTGGACGGGAACAGGGCCTAGTGTACATGTTCCTGGCCATGCTCTTCTCCTaGGCAGCTCGGAAGGGGACT +
Preference number: 4 (lower is better)
Translates to: CTYGSACGREQGLVYMFLAMLFS*AARKGT
Trigger: AGTCCCCTTCCGAGCTGCTCAGGAGAAGAGCATGGC...CAGGAACATGTACACTAGGCCCTGTTCCCGTCCACAAGCTGAGCCATATGTACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR TCA 90 bp AGCTTATGTACATATGGCTCAGCTTGTGGACGGGAACAGGGCCTAGTGTACATGCTTCCAGAGTGGTGCTaGGGTCTGGGGAGCAGGTCC +
Preference number: 4 (lower is better)
Translates to: SLCTYGSACGREQGLVYMLPEWC*GLGSRS
Trigger: GGACCTGCTCCCCAGACCTCAGCACCACTCTGGAAG...CATGTACACTAGGCCCTGTTCCCGTCCACAAGCTGAGCCATATGTACATAAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp GGCTGTCCTCCCTCCATCTCGAGCTGCCTGTGCACTGAGGAAATCACCCTGGGACTCAAGTTCAAAAACTaGAGCAACTCTTCCCTCGGG +
Preference number: 4 (lower is better)
Translates to: GCPPSISSCLCTEEITLGLKFKN*SNSSLG
Trigger: CCCGAGGGAAGAGTTGCTGCAGTTTTTGAACTTGAG...TCCCAGGGTGATTTCCTCAGTGCACAGGCAGCTCGAGATGGAGGGAGGACAGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp ATTTACAGTTACCTGAGGTGCAAGCTTTACAACATCCCCTGCCCACCCCACCCCGGTAGCCAACTGCCATaGCTGGTAGGTGGTGAACGG +
Preference number: 4 (lower is better)
Translates to: IYSYLRCKLYNIPCPPHPGSQLP*LVGGER
Trigger: CCGTTCACCACCTACCAGGCATGGCAGTTGGCTACC...GGGGTGGGGTGGGCAGGGGATGTTGTAAAGCTTGCACCTCAGGTAACTGTAAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp ATTTACAGTTACCTGAGGTGCAAGCTTTACAACATCCCCTGCCCACCCCACCCCGTCTCTCCCTTGCTGTaGCCATGGGCCGTCAACCTT +
Preference number: 4 (lower is better)
Translates to: IYSYLRCKLYNIPCPPHPVSPLL*PWAVNL
Trigger: AAGGTTGACGGCCCATGGGCACAGCAAGGGAGAGAC...GGGGTGGGGTGGGCAGGGGATGTTGTAAAGCTTGCACCTCAGGTAACTGTAAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp GTCCTCCCTCCATCTCGAGCTGCCTGTGCACTGAGGAAATCACCCTGGGAAACAGAGGCTCTGCTTATTTaGGAAGAGGAAGCCGCAGAC +
Preference number: 4 (lower is better)
Translates to: VLPPSRAACALRKSPWETEALLI*EEEAAD
Trigger: GTCTGCGGCTTCCTCTTCCCAAATAAGCAGAGCCTC...TGTTTCCCAGGGTGATTTCCTCAGTGCACAGGCAGCTCGAGATGGAGGGAGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp AGCTTATGTACATATGGCTCAGCTTGTGGACGGGAACAGGGCCTAGTGTACATGTGCAGACAGGGCTGCTaGCCTGAGGCTCCCCTGCTT +
Preference number: 4 (lower is better)
Translates to: SLCTYGSACGREQGLVYMCRQGC*PEAPLL
Trigger: AAGCAGGGGAGCCTCAGGCCAGCAGCCCTGTCTGCA...CATGTACACTAGGCCCTGTTCCCGTCCACAAGCTGAGCCATATGTACATAAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp TGGCAACTCTCCGAGACACCCAATCTTCCAAAAGAAAAGAACTTAGATGGCTCCGTCTGCAGACAGGGCTaGTGGCCTGAGGCTCCCCTG +
Preference number: 4 (lower is better)
Translates to: WQLSETPNLPKEKNLDGSVCRQG*WPEAPL
Trigger: CAGGGGAGCCTCAGGCCAGCAGCCCTGTCTGCAGAC...GGAGCCATCTAAGTTCTTTTCTTTTGGAAGATTGGGTGTCTCGGAGAGTTGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp ATTTACAGTTACCTGAGGTGCAAGCTTTACAACATCCCCTGCCCACCCCACCCCGCTCAAAGCCCCTTCTaGCATTGGTCCCTGCATGCT +
Preference number: 4 (lower is better)
Translates to: IYSYLRCKLYNIPCPPHPAQSPF*HWSLHA
Trigger: AGCATGCAGGGACCAATGGCAGAAGGGGCTTTGAGC...GGGGTGGGGTGGGCAGGGGATGTTGTAAAGCTTGCACCTCAGGTAACTGTAAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp TGTACATATGGCTCAGCTTGTGGACGGGAACAGGGCCTAGTGTACATGTTCCTGAGGCAGTCTTGGCCTTaGGCTTGTGCAGGCCAGACA +
Preference number: 4 (lower is better)
Translates to: CTYGSACGREQGLVYMFLRQSWP*ACAGQT
Trigger: TGTCTGGCCTGCACAAGCCCAAGGCCAAGACTGCCT...CAGGAACATGTACACTAGGCCCTGTTCCCGTCCACAAGCTGAGCCATATGTACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR TCA 90 bp TGTACATATGGCTCAGCTTGTGGACGGGAACAGGGCCTAGTGTACATGTTCCTGTTTGGGAAACAACTCTaGCTGCTGCTGCCTGGTGGC +
Preference number: 4 (lower is better)
Translates to: CTYGSACGREQGLVYMFLFGKQL*LLLPGG
Trigger: GCCACCAGGCAGCAGCAGTCAGAGTTGTTTCCCAAA...CAGGAACATGTACACTAGGCCCTGTTCCCGTCCACAAGCTGAGCCATATGTACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR TCA 90 bp TCTCGAGAACGAGCTTCCTGTACACTCACTGCATTTAGGCAAAGATGGTGTCAAAGCCAACACACTGGGTaGCTCCACCTCCCCAGGGCT +
Preference number: 4 (lower is better)
Translates to: SRERASCTLTAFRQRWCQSQHTG*LHLPRA
Trigger: AGCCCTGGGGAGGTGGAGTCACCCAGTGTGTTGGCT...TTGACACCATCTTTGCCTAAATGCAGTGAGTGTACAGGAAGCTCGTTCTCGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp GGCTGTCCTCCCTCCATCTCGAGCTGCCTGTGCACTGAGGAAATCACCCTGGGACTCAGCACTATCAGCTaGATGTTTATGGAAATCCTG +
Preference number: 4 (lower is better)
Translates to: GCPPSISSCLCTEEITLGLSTIS*MFMEIL
Trigger: CAGGATTTCCATAAACATGCAGCTGATAGTGCTGAG...TCCCAGGGTGATTTCCTCAGTGCACAGGCAGCTCGAGATGGAGGGAGGACAGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp GGTCTCCATTCAACACAAGAGGTAAGACATTTCCCAAGGACCCCTCATGGTACATTGGCCTTGGGCTTGTaGAGGCCAGACAAGGGAGGG +
Preference number: 4 (lower is better)
Translates to: GLHSTQEVRHFPRTPHGTLALGL*RPDKGG
Trigger: CCCTCCCTTGTCTGGCCTGCACAAGCCCAAGGCCAA...TGTACCATGAGGGGTCCTTGGGAAATGTCTTACCTCTTGTGTTGAATGGAGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp TGGCAACTCTCCGAGACACCCAATCTTCCAAAAGAAAAGAACTTAGATGGCTCCGCCTGGTGGCACTGGTaGCCCCAGCATTGGGTTGTG +
Preference number: 4 (lower is better)
Translates to: WQLSETPNLPKEKNLDGSAWWHW*PQHWVV
Trigger: CACAACCCAATGCTGGGGGCACCAGTGCCACCAGGC...GGAGCCATCTAAGTTCTTTTCTTTTGGAAGATTGGGTGTCTCGGAGAGTTGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp ATTTACAGTTACCTGAGGTGCAAGCTTTACAACATCCCCTGCCCACCCCACCCCACTCAGAACAGTGCGTaGGCTTCTCCTTGCTACTGG +
Preference number: 4 (lower is better)
Translates to: IYSYLRCKLYNIPCPPHPTQNSA*ASPCYW
Trigger: CCAGTAGCAAGGAGAAGCCCACGCACTGTTCTGAGT...GGGGTGGGGTGGGCAGGGGATGTTGTAAAGCTTGCACCTCAGGTAACTGTAAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp CCAGGTCTCCATTCAACACAAGAGGTAAGACATTTCCCAAGGACCCCTCATGGTGTGAGAAGGCAGTCTTaGCCTTGGGCTTGTGCAGGC +
Preference number: 4 (lower is better)
Translates to: PGLHSTQEVRHFPRTPHGVRRQS*PWACAG
Trigger: GCCTGCACAAGCCCAAGGCCAAGACTGCCTTCTCAC...ACCATGAGGGGTCCTTGGGAAATGTCTTACCTCTTGTGTTGAATGGAGACCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR TCA 90 bp GTGCGCTCTCAGAAGATGAACCAATGTATGATTCCGTGGAAGTGTGTACTTGCACACAGCCATGGTGGGTaGCAGGGCATCAGTCCTCCT +
Preference number: 4 (lower is better)
Translates to: VRSQKMNQCMIPWKCVLAHSHGG*QGISPP
Trigger: AGGAGGACTGATGCCCTGTCACCCACCATGGCTGTG...TGCAAGTACACACTTCCACGGAATCATACATTGGTTCATCTTCTGAGAGCGCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR TCA 90 bp TGTACATATGGCTCAGCTTGTGGACGGGAACAGGGCCTAGTGTACATGTTCCTGGTTGCTGTGTGCTGGTaGGAGAACACTCTGGAAGAC +
Preference number: 4 (lower is better)
Translates to: CTYGSACGREQGLVYMFLVAVCW*ENTLED
Trigger: GTCTTCCAGAGTGTTCTCTCACCAGCACACAGCAAC...CAGGAACATGTACACTAGGCCCTGTTCCCGTCCACAAGCTGAGCCATATGTACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR TCA 90 bp CCAGGTCTCCATTCAACACAAGAGGTAAGACATTTCCCAAGGACCCCTCATGGTGCTGTTGTCTGGTCCTaGAGTCTGGGGTGCTTTGCT +
Preference number: 4 (lower is better)
Translates to: PGLHSTQEVRHFPRTPHGAVVWS*SLGCFA
Trigger: AGCAAAGCACCCCAGACTTCAGGACCAGACAACAGC...ACCATGAGGGGTCCTTGGGAAATGTCTTACCTCTTGTGTTGAATGGAGACCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR TCA 90 bp AAAAGATCTTCCTACAAGAGCAGACACATCTCAACCCAGGTCTCCATTCAACACAGCCAACACACTGGGTaGCTCCACCTCCCCAGGGCT +
Preference number: 4 (lower is better)
Translates to: KRSSYKSRHISTQVSIQHSQHTG*LHLPRA
Trigger: AGCCCTGGGGAGGTGGAGTCACCCAGTGTGTTGGCT...GTGTTGAATGGAGACCTGGGTTGAGATGTGTCTGCTCTTGTAGGAAGATCTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp AGCTTATGTACATATGGCTCAGCTTGTGGACGGGAACAGGGCCTAGTGTACATGGGAAACAACTCTGACTaGTGCTGCCTGGTGGCACTG +
Preference number: 4 (lower is better)
Translates to: SLCTYGSACGREQGLVYMGNNSD*CCLVAL
Trigger: CAGTGCCACCAGGCAGCAGCAGTCAGAGTTGTTTCC...CATGTACACTAGGCCCTGTTCCCGTCCACAAGCTGAGCCATATGTACATAAGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp AGCTTATGTACATATGGCTCAGCTTGTGGACGGGAACAGGGCCTAGTGTACATGTCTGCCATTGGTCCCTaGATGCTCTGTGTCCAGGGA +
Preference number: 4 (lower is better)
Translates to: SLCTYGSACGREQGLVYMSAIGP*MLCVQG
Trigger: TCCCTGGACACAGAGCATGCAGGGACCAATGGCAGA...CATGTACACTAGGCCCTGTTCCCGTCCACAAGCTGAGCCATATGTACATAAGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp AAAAGATCTTCCTACAAGAGCAGACACATCTCAACCCAGGTCTCCATTCAACACCAATCCAGGGGCATGTaGCCCTCTGCCACGGCCATG +
Preference number: 4 (lower is better)
Translates to: KRSSYKSRHISTQVSIQHQSRGM*PSATAM
Trigger: CATGGCCGTGGCAGAGGGCCACATGCCCCTGGATTG...GTGTTGAATGGAGACCTGGGTTGAGATGTGTCTGCTCTTGTAGGAAGATCTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp CTAAGAAAACAGTCTAGCTTATGTACATATGGCTCAGCTTGTGGACGGGAACAGAGTGGTGCTGAGGTCTaGGGAGCAGGTCCCAGGCTG +
Preference number: 4 (lower is better)
Translates to: LRKQSSLCTYGSACGREQSGAEV*GAGPRL
Trigger: CAGCCTGGGACCTGCTCCCCAGACCTCAGCACCACT...CTGTTCCCGTCCACAAGCTGAGCCATATGTACATAAGCTAGACTGTTTTCTTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp CTAAGAAAACAGTCTAGCTTATGTACATATGGCTCAGCTTGTGGACGGGAACAGTGCAGACAGGGCTGCTaGCCTGAGGCTCCCCTGCTT +
Preference number: 4 (lower is better)
Translates to: LRKQSSLCTYGSACGREQCRQGC*PEAPLL
Trigger: AAGCAGGGGAGCCTCAGGCCAGCAGCCCTGTCTGCA...CTGTTCCCGTCCACAAGCTGAGCCATATGTACATAAGCTAGACTGTTTTCTTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp GGTCTCCATTCAACACAAGAGGTAAGACATTTCCCAAGGACCCCTCATGGTACAATTGCAGGACAGGCGTaGAGCGGCCCAAGGGATAGA +
Preference number: 4 (lower is better)
Translates to: GLHSTQEVRHFPRTPHGTIAGQA*SGPRDR
Trigger: TCTATCCCTTGGGCCGCTCCACGCCTGTCCTGCAAT...TGTACCATGAGGGGTCCTTGGGAAATGTCTTACCTCTTGTGTTGAATGGAGACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp AGCTTATGTACATATGGCTCAGCTTGTGGACGGGAACAGGGCCTAGTGTACATGAGGGGCAGGCAATGCTaGGGATCAGACACTTGCTCA +
Preference number: 4 (lower is better)
Translates to: SLCTYGSACGREQGLVYMRGRQC*GSDTCS
Trigger: TGAGCAAGTGTCTGATCCCCAGCATTGCCTGCCCCT...CATGTACACTAGGCCCTGTTCCCGTCCACAAGCTGAGCCATATGTACATAAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp TCTCGAGAACGAGCTTCCTGTACACTCACTGCATTTAGGCAAAGATGGTGTCAACTTTCCTTCAAGGGCTaGGCTGCCTCCTGCGTGTCC +
Preference number: 4 (lower is better)
Translates to: SRERASCTLTAFRQRWCQLSFKG*AASCVS
Trigger: GGACACGCAGGAGGCAGCCCAGCCCTTGAAGGAAAG...TTGACACCATCTTTGCCTAAATGCAGTGAGTGTACAGGAAGCTCGTTCTCGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR TCA 90 bp TCTCGAGAACGAGCTTCCTGTACACTCACTGCATTTAGGCAAAGATGGTGTCAACTCTCCATGCCTTGCTaGAGCTTGCTCCTGGTGCCA +
Preference number: 4 (lower is better)
Translates to: SRERASCTLTAFRQRWCQLSMPC*SLLLVP
Trigger: TGGCACCAGGAGCAAGCTTCAGCAAGGCATGGAGAG...TTGACACCATCTTTGCCTAAATGCAGTGAGTGTACAGGAAGCTCGTTCTCGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR TCA 90 bp AAAAGATCTTCCTACAAGAGCAGACACATCTCAACCCAGGTCTCCATTCAACACCTGCCGAGCCTTCTCTaGGTGCAGGGACTTCGAGTG +
Preference number: 4 (lower is better)
Translates to: KRSSYKSRHISTQVSIQHLPSLL*VQGLRV
Trigger: CACTCGAAGTCCCTGCACTCAGAGAAGGCTCGGCAG...GTGTTGAATGGAGACCTGGGTTGAGATGTGTCTGCTCTTGTAGGAAGATCTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp GACTCAAGGTGTCCACACCTCCAATACCAGACACAGCAAGACTCCAAATACAAACCTGGCTGCAGAACATaGAATCCAGGGGCATGTGGC +
Preference number: 4 (lower is better)
Translates to: DSRCPHLQYQTQQDSKYKPGCRT*NPGACG
Trigger: GCCACATGCCCCTGGATTGCATGTTCTGCAGCCAGG...TTTGTATTTGGAGTCTTGCTGTGTCTGGTATTGGAGGTGTGGACACCTTGAGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp AAAAGATCTTCCTACAAGAGCAGACACATCTCAACCCAGGTCTCCATTCAACACATGCTCCCAGGGGCGTaGGGCTGGACCACTTCATTG +
Preference number: 4 (lower is better)
Translates to: KRSSYKSRHISTQVSIQHMLPGA*GWTTSL
Trigger: CAATGAAGTGGTCCAGCCGCACGCCCCTGGGAGCAT...GTGTTGAATGGAGACCTGGGTTGAGATGTGTCTGCTCTTGTAGGAAGATCTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp TCTCGAGAACGAGCTTCCTGTACACTCACTGCATTTAGGCAAAGATGGTGTCAAGGCATCTCCTTAAGCTaGTTGGCAGGTGGGCTTCCC +
Preference number: 4 (lower is better)
Translates to: SRERASCTLTAFRQRWCQGISLS*LAGGLP
Trigger: GGGAAGCCCACCTGCCAAGCAGCTTAAGGAGATGCC...TTGACACCATCTTTGCCTAAATGCAGTGAGTGTACAGGAAGCTCGTTCTCGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp ATTTACAGTTACCTGAGGTGCAAGCTTTACAACATCCCCTGCCCACCCCACCCCTACTTGGGGCTAAAGTaGTGTTGTCTGGTCCTGAAG +
Preference number: 4 (lower is better)
Translates to: IYSYLRCKLYNIPCPPHPYLGLK*CCLVLK
Trigger: CTTCAGGACCAGACAACAGCACTTTAGCCCCAAGTA...GGGGTGGGGTGGGCAGGGGATGTTGTAAAGCTTGCACCTCAGGTAACTGTAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp CTAAGAAAACAGTCTAGCTTATGTACATATGGCTCAGCTTGTGGACGGGAACAGAACTCTGACTGCTGCTaGCTGGTGGCACTGGTGCCC +
Preference number: 4 (lower is better)
Translates to: LRKQSSLCTYGSACGREQNSDCC*LVALVP
Trigger: GGGCACCAGTGCCACCAGGCAGCAGCAGTCAGAGTT...CTGTTCCCGTCCACAAGCTGAGCCATATGTACATAAGCTAGACTGTTTTCTTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp CTCCAAATACAAACGATTTCCCTAAGCTTTCCACTCCCTTTAAAAATTGCTTCCCTGGCTCGCAGAGGGTaGGCCGGTGCTGCAGCAGCA +
Preference number: 4 (lower is better)
Translates to: LQIQTISLSFPLPLKIASLARRG*AGAAAA
Trigger: TGCTGCTGCAGCACCGGCCCACCCTCTGCGAGCCAG...GGAAGCAATTTTTAAAGGGAGTGGAAAGCTTAGGGAAATCGTTTGTATTTGGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp ATTTACAGTTACCTGAGGTGCAAGCTTTACAACATCCCCTGCCCACCCCACCCCGCTTCTCCTTGCTACTaGACAACTTGGGGTCACTAT +
Preference number: 4 (lower is better)
Translates to: IYSYLRCKLYNIPCPPHPASPCY*TTWGHY
Trigger: ATAGTGACCCCAAGTTGTCCAGTAGCAAGGAGAAGC...GGGGTGGGGTGGGCAGGGGATGTTGTAAAGCTTGCACCTCAGGTAACTGTAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp CCAGGTCTCCATTCAACACAAGAGGTAAGACATTTCCCAAGGACCCCTCATGGTCTCAGAGATGTCTTCTaGGCTGCGGCATACTCACAG +
Preference number: 4 (lower is better)
Translates to: PGLHSTQEVRHFPRTPHGLRDVF*AAAYSQ
Trigger: CTGTGAGTATGCCGCAGCCCAGAAGACATCTCTGAG...ACCATGAGGGGTCCTTGGGAAATGTCTTACCTCTTGTGTTGAATGGAGACCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp AGCTTATGTACATATGGCTCAGCTTGTGGACGGGAACAGGGCCTAGTGTACATGCTCAGAGATGTCTTCTaGGCTGCGGCATACTCACAG +
Preference number: 4 (lower is better)
Translates to: SLCTYGSACGREQGLVYMLRDVF*AAAYSQ
Trigger: CTGTGAGTATGCCGCAGCCCAGAAGACATCTCTGAG...CATGTACACTAGGCCCTGTTCCCGTCCACAAGCTGAGCCATATGTACATAAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp CTAAGAAAACAGTCTAGCTTATGTACATATGGCTCAGCTTGTGGACGGGAACAGGCATCCTGCGGCTCCTaGCTCCGGCCTTCACTTTTG +
Preference number: 4 (lower is better)
Translates to: LRKQSSLCTYGSACGREQASCGS*LRPSLL
Trigger: CAAAAGTGAAGGCCGGAGCCAGGAGCCGCAGGATGC...CTGTTCCCGTCCACAAGCTGAGCCATATGTACATAAGCTAGACTGTTTTCTTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp GACTCAAGGTGTCCACACCTCCAATACCAGACACAGCAAGACTCCAAATACAAAAGGCAGTCTTGGCCTTaGGCTTGTGCAGGCCAGACA +
Preference number: 4 (lower is better)
Translates to: DSRCPHLQYQTQQDSKYKRQSWP*ACAGQT
Trigger: TGTCTGGCCTGCACAAGCCCAAGGCCAAGACTGCCT...TTTGTATTTGGAGTCTTGCTGTGTCTGGTATTGGAGGTGTGGACACCTTGAGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp TGTACATATGGCTCAGCTTGTGGACGGGAACAGGGCCTAGTGTACATGTTCCTGATGCTCCTGACCACATaGTACTTGGGGAGCTCAAAG +
Preference number: 4 (lower is better)
Translates to: CTYGSACGREQGLVYMFLMLLTT*YLGSSK
Trigger: CTTTGAGCTCCCCAAGTACCATGTGGTCAGGAGCAT...CAGGAACATGTACACTAGGCCCTGTTCCCGTCCACAAGCTGAGCCATATGTACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp TCTCGAGAACGAGCTTCCTGTACACTCACTGCATTTAGGCAAAGATGGTGTCAATGCCTTGCTGAAGCTTaGTCCTGGTGCCAGACTTGC +
Preference number: 4 (lower is better)
Translates to: SRERASCTLTAFRQRWCQCLAEA*SWCQTC
Trigger: GCAAGTCTGGCACCAGGAGCAAGCTTCAGCAAGGCA...TTGACACCATCTTTGCCTAAATGCAGTGAGTGTACAGGAAGCTCGTTCTCGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp AAAAGATCTTCCTACAAGAGCAGACACATCTCAACCCAGGTCTCCATTCAACACGGTAGCCAACTGCCATaGCTGGTAGGTGGTGAACGG +
Preference number: 4 (lower is better)
Translates to: KRSSYKSRHISTQVSIQHGSQLP*LVGGER
Trigger: CCGTTCACCACCTACCAGGCATGGCAGTTGGCTACC...GTGTTGAATGGAGACCTGGGTTGAGATGTGTCTGCTCTTGTAGGAAGATCTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp TGGCAACTCTCCGAGACACCCAATCTTCCAAAAGAAAAGAACTTAGATGGCTCCGCGTGGGCTTCTCCTTaGTACTGGACAACTTGGGGT +
Preference number: 4 (lower is better)
Translates to: WQLSETPNLPKEKNLDGSAWASP*YWTTWG
Trigger: ACCCCAAGTTGTCCAGTAGCAAGGAGAAGCCCACGC...GGAGCCATCTAAGTTCTTTTCTTTTGGAAGATTGGGTGTCTCGGAGAGTTGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp CTAAGAAAACAGTCTAGCTTATGTACATATGGCTCAGCTTGTGGACGGGAACAGCTGTGCACCCTCGAGTaGAGGACGAGCTGGTGGTAT +
Preference number: 4 (lower is better)
Translates to: LRKQSSLCTYGSACGREQLCTLE*RTSWWY
Trigger: ATACCACCAGCTCGTCCTGCACTCGAGGGTGCACAG...CTGTTCCCGTCCACAAGCTGAGCCATATGTACATAAGCTAGACTGTTTTCTTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp GTGTCAACATTTCGTTCCATCAGCAATGTGAAGACAAACAATAGACTCAGTGAGGCCTGGTGGCACTGGTaGCCCCAGCATTGGGTTGTG +
Preference number: 4 (lower is better)
Translates to: VSTFRSISNVKTNNRLSEAWWHW*PQHWVV
Trigger: CACAACCCAATGCTGGGGGCACCAGTGCCACCAGGC...CTCACTGAGTCTATTGTTTGTCTTCACATTGCTGATGGAACGAAATGTTGACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp TGGCAACTCTCCGAGACACCCAATCTTCCAAAAGAAAAGAACTTAGATGGCTCCAACAACTCTGACTGCTaGTGCCTGGTGGCACTGGTG +
Preference number: 4 (lower is better)
Translates to: WQLSETPNLPKEKNLDGSNNSDC*CLVALV
Trigger: CACCAGTGCCACCAGGCAGCAGCAGTCAGAGTTGTT...GGAGCCATCTAAGTTCTTTTCTTTTGGAAGATTGGGTGTCTCGGAGAGTTGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp CGCCCAACGGCTCCCACTCGTTTTTATTGCTATTTGGTACAAAGGTTAACAGAACCATTGGTCCCTGCATaGTCTGTGTCCAGGGACACC +
Preference number: 4 (lower is better)
Translates to: RPTAPTRFYCYLVQRLTEPLVPA*SVSRDT
Trigger: GGTGTCCCTGGACACAGAGCATGCAGGGACCAATGG...TTCTGTTAACCTTTGTACCAAATAGCAATAAAAACGAGTGGGAGCCGTTGGGCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp GACTCAAGGTGTCCACACCTCCAATACCAGACACAGCAAGACTCCAAATACAAAGCTCAAAGCCCCTTCTaGCATTGGTCCCTGCATGCT +
Preference number: 4 (lower is better)
Translates to: DSRCPHLQYQTQQDSKYKAQSPF*HWSLHA
Trigger: AGCATGCAGGGACCAATGGCAGAAGGGGCTTTGAGC...TTTGTATTTGGAGTCTTGCTGTGTCTGGTATTGGAGGTGTGGACACCTTGAGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp GTCCTCCCTCCATCTCGAGCTGCCTGTGCACTGAGGAAATCACCCTGGGAAACATACCTGCAGTTGATCTaGGTCTCAAGTTCAAAAACT +
Preference number: 4 (lower is better)
Translates to: VLPPSRAACALRKSPWETYLQLI*VSSSKT
Trigger: AGTTTTTGAACTTGAGACCCAGATCAACTGCAGGTA...TGTTTCCCAGGGTGATTTCCTCAGTGCACAGGCAGCTCGAGATGGAGGGAGGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp AGCTTATGTACATATGGCTCAGCTTGTGGACGGGAACAGGGCCTAGTGTACATGGGCTTCTCTTTGTCTTaGGAGAGACCTGGACAACTG +
Preference number: 4 (lower is better)
Translates to: SLCTYGSACGREQGLVYMGFSLS*ERPGQL
Trigger: CAGTTGTCCAGGTCTCTCCCAAGACAAAGAGAAGCC...CATGTACACTAGGCCCTGTTCCCGTCCACAAGCTGAGCCATATGTACATAAGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp TCTCGAGAACGAGCTTCCTGTACACTCACTGCATTTAGGCAAAGATGGTGTCAATTCAAAGGCCTGTCCTaGCAGTCAGCACCGGGCTTA +
Preference number: 4 (lower is better)
Translates to: SRERASCTLTAFRQRWCQFKGLS*QSAPGL
Trigger: TAAGCCCGGTGCTGACTGCCAGGACAGGCCTTTGAA...TTGACACCATCTTTGCCTAAATGCAGTGAGTGTACAGGAAGCTCGTTCTCGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp AAAAGATCTTCCTACAAGAGCAGACACATCTCAACCCAGGTCTCCATTCAACACATTGCAGGACAGGCGTaGAGCGGCCCAAGGGATAGA +
Preference number: 4 (lower is better)
Translates to: KRSSYKSRHISTQVSIQHIAGQA*SGPRDR
Trigger: TCTATCCCTTGGGCCGCTCCACGCCTGTCCTGCAAT...GTGTTGAATGGAGACCTGGGTTGAGATGTGTCTGCTCTTGTAGGAAGATCTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp GACTCAAGGTGTCCACACCTCCAATACCAGACACAGCAAGACTCCAAATACAAAAGGGGCAGGCAATGCTaGGGATCAGACACTTGCTCA +
Preference number: 4 (lower is better)
Translates to: DSRCPHLQYQTQQDSKYKRGRQC*GSDTCS
Trigger: TGAGCAAGTGTCTGATCCCCAGCATTGCCTGCCCCT...TTTGTATTTGGAGTCTTGCTGTGTCTGGTATTGGAGGTGTGGACACCTTGAGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp AAAAGATCTTCCTACAAGAGCAGACACATCTCAACCCAGGTCTCCATTCAACACGTGAGAAGGCAGTCTTaGCCTTGGGCTTGTGCAGGC +
Preference number: 4 (lower is better)
Translates to: KRSSYKSRHISTQVSIQHVRRQS*PWACAG
Trigger: GCCTGCACAAGCCCAAGGCCAAGACTGCCTTCTCAC...GTGTTGAATGGAGACCTGGGTTGAGATGTGTCTGCTCTTGTAGGAAGATCTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR TCA 90 bp CTAAGAAAACAGTCTAGCTTATGTACATATGGCTCAGCTTGTGGACGGGAACAGGCTGTTGTCTGGTCCTaGAGTCTGGGGTGCTTTGCT +
Preference number: 4 (lower is better)
Translates to: LRKQSSLCTYGSACGREQAVVWS*SLGCFA
Trigger: AGCAAAGCACCCCAGACTTCAGGACCAGACAACAGC...CTGTTCCCGTCCACAAGCTGAGCCATATGTACATAAGCTAGACTGTTTTCTTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR TCA 90 bp CGCCCAACGGCTCCCACTCGTTTTTATTGCTATTTGGTACAAAGGTTAACAGAATTTGGGAAACAACTCTaGCTGCTGCTGCCTGGTGGC +
Preference number: 4 (lower is better)
Translates to: RPTAPTRFYCYLVQRLTEFGKQL*LLLPGG
Trigger: GCCACCAGGCAGCAGCAGTCAGAGTTGTTTCCCAAA...TTCTGTTAACCTTTGTACCAAATAGCAATAAAAACGAGTGGGAGCCGTTGGGCG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR TCA 90 bp AGCTTATGTACATATGGCTCAGCTTGTGGACGGGAACAGGGCCTAGTGTACATGCTGTTAGATAGGTGCTaGTGTGACACAGGCCTCTTT +
Preference number: 4 (lower is better)
Translates to: SLCTYGSACGREQGLVYMLLDRC*CDTGLF
Trigger: AAAGAGGCCTGTGTCACATCAGCACCTATCTAACAG...CATGTACACTAGGCCCTGTTCCCGTCCACAAGCTGAGCCATATGTACATAAGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp TCTCGAGAACGAGCTTCCTGTACACTCACTGCATTTAGGCAAAGATGGTGTCAAGAGAGAAGACCTGGCTaGAGAACATGCAATCCAGGG +
Preference number: 4 (lower is better)
Translates to: SRERASCTLTAFRQRWCQERRPG*RTCNPG
Trigger: CCCTGGATTGCATGTTCTGCAGCCAGGTCTTCTCTC...TTGACACCATCTTTGCCTAAATGCAGTGAGTGTACAGGAAGCTCGTTCTCGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp GACTCAAGGTGTCCACACCTCCAATACCAGACACAGCAAGACTCCAAATACAAAGAAGCTTGCTCCTGGTaGCAGACTTGCCATTGTGTG +
Preference number: 4 (lower is better)
Translates to: DSRCPHLQYQTQQDSKYKEACSW*QTCHCV
Trigger: CACACAATGGCAAGTCTGGCACCAGGAGCAAGCTTC...TTTGTATTTGGAGTCTTGCTGTGTCTGGTATTGGAGGTGTGGACACCTTGAGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp AAAAGATCTTCCTACAAGAGCAGACACATCTCAACCCAGGTCTCCATTCAACACTGCCTTGCTGAAGCTTaGTCCTGGTGCCAGACTTGC +
Preference number: 4 (lower is better)
Translates to: KRSSYKSRHISTQVSIQHCLAEA*SWCQTC
Trigger: GCAAGTCTGGCACCAGGAGCAAGCTTCAGCAAGGCA...GTGTTGAATGGAGACCTGGGTTGAGATGTGTCTGCTCTTGTAGGAAGATCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp AAAAGATCTTCCTACAAGAGCAGACACATCTCAACCCAGGTCTCCATTCAACACGGCCTGAGGCTCCCCTaGTTTCTTTCTCTGCATGTC +
Preference number: 4 (lower is better)
Translates to: KRSSYKSRHISTQVSIQHGLRLP*FLSLHV
Trigger: GACATGCAGAGAAAGAAAGCAGGGGAGCCTCAGGCC...GTGTTGAATGGAGACCTGGGTTGAGATGTGTCTGCTCTTGTAGGAAGATCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp AAGACTCCAAATACAAACGATTTCCCTAAGCTTTCCACTCCCTTTAAAAATTGCGTCTGCAGACAGGGCTaGTGGCCTGAGGCTCCCCTG +
Preference number: 4 (lower is better)
Translates to: KTPNTNDFPKLSTPFKNCVCRQG*WPEAPL
Trigger: CAGGGGAGCCTCAGGCCAGCAGCCCTGTCTGCAGAC...GCAATTTTTAAAGGGAGTGGAAAGCTTAGGGAAATCGTTTGTATTTGGAGTCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp AAAAGATCTTCCTACAAGAGCAGACACATCTCAACCCAGGTCTCCATTCAACACCTTGCTCAAAGAGATTaGAGGACAGGCGTGGAGCGG +
Preference number: 4 (lower is better)
Translates to: KRSSYKSRHISTQVSIQHLAQRD*RTGVER
Trigger: CCGCTCCACGCCTGTCCTGCAATCTCTTTGAGCAAG...GTGTTGAATGGAGACCTGGGTTGAGATGTGTCTGCTCTTGTAGGAAGATCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp CGCCCAACGGCTCCCACTCGTTTTTATTGCTATTTGGTACAAAGGTTAACAGAACTCACTGTACTCTGCTaGGGCACTGCCAGAATTCCG +
Preference number: 4 (lower is better)
Translates to: RPTAPTRFYCYLVQRLTELTVLC*GTARIP
Trigger: CGGAATTCTGGCAGTGCCGCAGCAGAGTACAGTGAG...TTCTGTTAACCTTTGTACCAAATAGCAATAAAAACGAGTGGGAGCCGTTGGGCG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp CTAAGAAAACAGTCTAGCTTATGTACATATGGCTCAGCTTGTGGACGGGAACAGCTCACTGTACTCTGCTaGGGCACTGCCAGAATTCCG +
Preference number: 4 (lower is better)
Translates to: LRKQSSLCTYGSACGREQLTVLC*GTARIP
Trigger: CGGAATTCTGGCAGTGCCGCAGCAGAGTACAGTGAG...CTGTTCCCGTCCACAAGCTGAGCCATATGTACATAAGCTAGACTGTTTTCTTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp TCTCGAGAACGAGCTTCCTGTACACTCACTGCATTTAGGCAAAGATGGTGTCAAACTCTTCTCCAATGCTaGCTCTGTTGGCTCCAGAGC +
Preference number: 4 (lower is better)
Translates to: SRERASCTLTAFRQRWCQTLLQC*LCWLQS
Trigger: GCTCTGGAGCCAACAGAGCCAGCATTGGAGAAGAGT...TTGACACCATCTTTGCCTAAATGCAGTGAGTGTACAGGAAGCTCGTTCTCGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp CTAAGAAAACAGTCTAGCTTATGTACATATGGCTCAGCTTGTGGACGGGAACAGTTGCATCCACAGCCATaGTGGGTGACAGGGCATCAG +
Preference number: 4 (lower is better)
Translates to: LRKQSSLCTYGSACGREQLHPQP*WVTGHQ
Trigger: CTGATGCCCTGTCACCCACCATGGCTGTGGATGCAA...CTGTTCCCGTCCACAAGCTGAGCCATATGTACATAAGCTAGACTGTTTTCTTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR TCA 90 bp TGGCAACTCTCCGAGACACCCAATCTTCCAAAAGAAAAGAACTTAGATGGCTCCCCTTGCTGTGCTCAATaGGGCTCTGCTTATTTGGGA +
Preference number: 4 (lower is better)
Translates to: WQLSETPNLPKEKNLDGSPCCAQ*GSAYLG
Trigger: TCCCAAATAAGCAGAGCCTCATTGAGCACAGCAAGG...GGAGCCATCTAAGTTCTTTTCTTTTGGAAGATTGGGTGTCTCGGAGAGTTGCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR TCA 90 bp CCAGGTCTCCATTCAACACAAGAGGTAAGACATTTCCCAAGGACCCCTCATGGTTGTACTACCTGCAGTTaGTCTGGGTCTCAAGTTCAA +
Preference number: 4 (lower is better)
Translates to: PGLHSTQEVRHFPRTPHGCTTCS*SGSQVQ
Trigger: TTGAACTTGAGACCCAGATCAACTGCAGGTAGTACA...ACCATGAGGGGTCCTTGGGAAATGTCTTACCTCTTGTGTTGAATGGAGACCTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR TCA 90 bp GTGCGCTCTCAGAAGATGAACCAATGTATGATTCCGTGGAAGTGTGTACTTGCAGGCTGCTTGTCTTTGTaGTGTCTCTCCAAGTGGTAC +
Preference number: 4 (lower is better)
Translates to: VRSQKMNQCMIPWKCVLAGCLSL*CLSKWY
Trigger: GTACCACTTGGAGAGACATCACAAAGACAAGCAGCC...TGCAAGTACACACTTCCACGGAATCATACATTGGTTCATCTTCTGAGAGCGCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR TCA 90 bp CTCCAAATACAAACGATTTCCCTAAGCTTTCCACTCCCTTTAAAAATTGCTTCCACAGGGCTGCTGGCCTaGGGCTCCCCTGCTTTCTTT +
Preference number: 4 (lower is better)
Translates to: LQIQTISLSFPLPLKIASTGLLA*GSPAFF
Trigger: AAAGAAAGCAGGGGAGCCTCAGGCCAGCAGCCCTGT...GGAAGCAATTTTTAAAGGGAGTGGAAAGCTTAGGGAAATCGTTTGTATTTGGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp AAAAGATCTTCCTACAAGAGCAGACACATCTCAACCCAGGTCTCCATTCAACACGGTCAAGCTGAGGTATaGAGGTCATGGGCTTCACTG +
Preference number: 4 (lower is better)
Translates to: KRSSYKSRHISTQVSIQHGQAEV*RSWASL
Trigger: CAGTGAAGCCCATGACCTGCATACCTCAGCTTGACC...GTGTTGAATGGAGACCTGGGTTGAGATGTGTCTGCTCTTGTAGGAAGATCTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp GTGTCAACATTTCGTTCCATCAGCAATGTGAAGACAAACAATAGACTCAGTGAGCTGTGCACCCTCGAGTaGAGGACGAGCTGGTGGTAT +
Preference number: 4 (lower is better)
Translates to: VSTFRSISNVKTNNRLSELCTLE*RTSWWY
Trigger: ATACCACCAGCTCGTCCTGCACTCGAGGGTGCACAG...CTCACTGAGTCTATTGTTTGTCTTCACATTGCTGATGGAACGAAATGTTGACAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp CTCCAAATACAAACGATTTCCCTAAGCTTTCCACTCCCTTTAAAAATTGCTTCCGAGCAGGTCCCAGGCTaGCTTGCATCCACAGCCATG +
Preference number: 4 (lower is better)
Translates to: LQIQTISLSFPLPLKIASEQVPG*LASTAM
Trigger: CATGGCTGTGGATGCAAGGCAGCCTGGGACCTGCTC...GGAAGCAATTTTTAAAGGGAGTGGAAAGCTTAGGGAAATCGTTTGTATTTGGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp GGTCTCCATTCAACACAAGAGGTAAGACATTTCCCAAGGACCCCTCATGGTACAAGATGTCTTCTGGGCTaGGGCATACTCACAGAATTC +
Preference number: 4 (lower is better)
Translates to: GLHSTQEVRHFPRTPHGTRCLLG*GILTEF
Trigger: GAATTCTGTGAGTATGCCGCAGCCCAGAAGACATCT...TGTACCATGAGGGGTCCTTGGGAAATGTCTTACCTCTTGTGTTGAATGGAGACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp CTCCAAATACAAACGATTTCCCTAAGCTTTCCACTCCCTTTAAAAATTGCTTCCCAACCCCCTCTAGTCTaGAGACAGGGCTGCTGGCCT +
Preference number: 4 (lower is better)
Translates to: LQIQTISLSFPLPLKIASQPPLV*RQGCWP
Trigger: AGGCCAGCAGCCCTGTCTGCAGACTAGAGGGGGTTG...GGAAGCAATTTTTAAAGGGAGTGGAAAGCTTAGGGAAATCGTTTGTATTTGGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp CTCCAAATACAAACGATTTCCCTAAGCTTTCCACTCCCTTTAAAAATTGCTTCCAACTCTGACTGCTGCTaGCTGGTGGCACTGGTGCCC +
Preference number: 4 (lower is better)
Translates to: LQIQTISLSFPLPLKIASNSDCC*LVALVP
Trigger: GGGCACCAGTGCCACCAGGCAGCAGCAGTCAGAGTT...GGAAGCAATTTTTAAAGGGAGTGGAAAGCTTAGGGAAATCGTTTGTATTTGGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp GTGTCAACATTTCGTTCCATCAGCAATGTGAAGACAAACAATAGACTCAGTGAGCCATTGGTCCCTGCATaGTCTGTGTCCAGGGACACC +
Preference number: 4 (lower is better)
Translates to: VSTFRSISNVKTNNRLSEPLVPA*SVSRDT
Trigger: GGTGTCCCTGGACACAGAGCATGCAGGGACCAATGG...CTCACTGAGTCTATTGTTTGTCTTCACATTGCTGATGGAACGAAATGTTGACAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp TGGCAACTCTCCGAGACACCCAATCTTCCAAAAGAAAAGAACTTAGATGGCTCCGGCTTCTCTTTGTCTTaGGAGAGACCTGGACAACTG +
Preference number: 4 (lower is better)
Translates to: WQLSETPNLPKEKNLDGSGFSLS*ERPGQL
Trigger: CAGTTGTCCAGGTCTCTCCCAAGACAAAGAGAAGCC...GGAGCCATCTAAGTTCTTTTCTTTTGGAAGATTGGGTGTCTCGGAGAGTTGCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp CTCCAAATACAAACGATTTCCCTAAGCTTTCCACTCCCTTTAAAAATTGCTTCCGCATCCTGCGGCTCCTaGCTCCGGCCTTCACTTTTG +
Preference number: 4 (lower is better)
Translates to: LQIQTISLSFPLPLKIASASCGS*LRPSLL
Trigger: CAAAAGTGAAGGCCGGAGCCAGGAGCCGCAGGATGC...GGAAGCAATTTTTAAAGGGAGTGGAAAGCTTAGGGAAATCGTTTGTATTTGGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp GACTCAAGGTGTCCACACCTCCAATACCAGACACAGCAAGACTCCAAATACAAAGGTGAGAGAACACTCTaGAAGACAGAAGGCATCTCC +
Preference number: 4 (lower is better)
Translates to: DSRCPHLQYQTQQDSKYKGERTL*KTEGIS
Trigger: GGAGATGCCTTCTGTCTTCCAGAGTGTTCTCTCACC...TTTGTATTTGGAGTCTTGCTGTGTCTGGTATTGGAGGTGTGGACACCTTGAGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp TGGCAACTCTCCGAGACACCCAATCTTCCAAAAGAAAAGAACTTAGATGGCTCCATGCTCCTGACCACATaGTACTTGGGGAGCTCAAAG +
Preference number: 4 (lower is better)
Translates to: WQLSETPNLPKEKNLDGSMLLTT*YLGSSK
Trigger: CTTTGAGCTCCCCAAGTACCATGTGGTCAGGAGCAT...GGAGCCATCTAAGTTCTTTTCTTTTGGAAGATTGGGTGTCTCGGAGAGTTGCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR TCA 90 bp AAGACTCCAAATACAAACGATTTCCCTAAGCTTTCCACTCCCTTTAAAAATTGCGCCATGCTCTTCTCCTaGGCAGCTCGGAAGGGGACT +
Preference number: 4 (lower is better)
Translates to: KTPNTNDFPKLSTPFKNCAMLFS*AARKGT
Trigger: AGTCCCCTTCCGAGCTGCTCAGGAGAAGAGCATGGC...GCAATTTTTAAAGGGAGTGGAAAGCTTAGGGAAATCGTTTGTATTTGGAGTCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR TCA 90 bp CTCCAAATACAAACGATTTCCCTAAGCTTTCCACTCCCTTTAAAAATTGCTTCCCTCTCCATGCCTTGCTaGAGCTTGCTCCTGGTGCCA +
Preference number: 4 (lower is better)
Translates to: LQIQTISLSFPLPLKIASLSMPC*SLLLVP
Trigger: TGGCACCAGGAGCAAGCTTCAGCAAGGCATGGAGAG...GGAAGCAATTTTTAAAGGGAGTGGAAAGCTTAGGGAAATCGTTTGTATTTGGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR TCA 90 bp AAGACTCCAAATACAAACGATTTCCCTAAGCTTTCCACTCCCTTTAAAAATTGCCACAGCCATGGTGGGTaGCAGGGCATCAGTCCTCCT +
Preference number: 4 (lower is better)
Translates to: KTPNTNDFPKLSTPFKNCHSHGG*QGISPP
Trigger: AGGAGGACTGATGCCCTGTCACCCACCATGGCTGTG...GCAATTTTTAAAGGGAGTGGAAAGCTTAGGGAAATCGTTTGTATTTGGAGTCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp CTCCAAATACAAACGATTTCCCTAAGCTTTCCACTCCCTTTAAAAATTGCTTCCCCTGGCTGCAGAACATaGAATCCAGGGGCATGTGGC +
Preference number: 4 (lower is better)
Translates to: LQIQTISLSFPLPLKIASPGCRT*NPGACG
Trigger: GCCACATGCCCCTGGATTGCATGTTCTGCAGCCAGG...GGAAGCAATTTTTAAAGGGAGTGGAAAGCTTAGGGAAATCGTTTGTATTTGGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp TCTCGAGAACGAGCTTCCTGTACACTCACTGCATTTAGGCAAAGATGGTGTCAACTCAAGTTCAAAAACTaGAGCAACTCTTCCCTCGGG +
Preference number: 4 (lower is better)
Translates to: SRERASCTLTAFRQRWCQLKFKN*SNSSLG
Trigger: CCCGAGGGAAGAGTTGCTGCAGTTTTTGAACTTGAG...TTGACACCATCTTTGCCTAAATGCAGTGAGTGTACAGGAAGCTCGTTCTCGAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp GTGTCAACATTTCGTTCCATCAGCAATGTGAAGACAAACAATAGACTCAGTGAGGCGTGGGCTTCTCCTTaGTACTGGACAACTTGGGGT +
Preference number: 4 (lower is better)
Translates to: VSTFRSISNVKTNNRLSEAWASP*YWTTWG
Trigger: ACCCCAAGTTGTCCAGTAGCAAGGAGAAGCCCACGC...CTCACTGAGTCTATTGTTTGTCTTCACATTGCTGATGGAACGAAATGTTGACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp GACTCAAGGTGTCCACACCTCCAATACCAGACACAGCAAGACTCCAAATACAAAAGATGTCTTCTGGGCTaGGGCATACTCACAGAATTC +
Preference number: 4 (lower is better)
Translates to: DSRCPHLQYQTQQDSKYKRCLLG*GILTEF
Trigger: GAATTCTGTGAGTATGCCGCAGCCCAGAAGACATCT...TTTGTATTTGGAGTCTTGCTGTGTCTGGTATTGGAGGTGTGGACACCTTGAGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp AGCTTATGTACATATGGCTCAGCTTGTGGACGGGAACAGGGCCTAGTGTACATGTTTAAATTTTTGGTCTaGGCACTGTCAGCAGCCGTT +
Preference number: 4 (lower is better)
Translates to: SLCTYGSACGREQGLVYMFKFLV*ALSAAV
Trigger: AACGGCTGCTGACAGTGCGCAGACCAAAAATTTAAA...CATGTACACTAGGCCCTGTTCCCGTCCACAAGCTGAGCCATATGTACATAAGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp GTGTCAACATTTCGTTCCATCAGCAATGTGAAGACAAACAATAGACTCAGTGAGGGCCTGAGGCTCCCCTaGTTTCTTTCTCTGCATGTC +
Preference number: 4 (lower is better)
Translates to: VSTFRSISNVKTNNRLSEGLRLP*FLSLHV
Trigger: GACATGCAGAGAAAGAAAGCAGGGGAGCCTCAGGCC...CTCACTGAGTCTATTGTTTGTCTTCACATTGCTGATGGAACGAAATGTTGACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp GTGTCAACATTTCGTTCCATCAGCAATGTGAAGACAAACAATAGACTCAGTGAGGGAAACAACTCTGACTaGTGCTGCCTGGTGGCACTG +
Preference number: 4 (lower is better)
Translates to: VSTFRSISNVKTNNRLSEGNNSD*CCLVAL
Trigger: CAGTGCCACCAGGCAGCAGCAGTCAGAGTTGTTTCC...CTCACTGAGTCTATTGTTTGTCTTCACATTGCTGATGGAACGAAATGTTGACAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp GTGTCAACATTTCGTTCCATCAGCAATGTGAAGACAAACAATAGACTCAGTGAGTCTGCCATTGGTCCCTaGATGCTCTGTGTCCAGGGA +
Preference number: 4 (lower is better)
Translates to: VSTFRSISNVKTNNRLSESAIGP*MLCVQG
Trigger: TCCCTGGACACAGAGCATGCAGGGACCAATGGCAGA...CTCACTGAGTCTATTGTTTGTCTTCACATTGCTGATGGAACGAAATGTTGACAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp GACTCAAGGTGTCCACACCTCCAATACCAGACACAGCAAGACTCCAAATACAAACAATGCTGGCTCTGTTaGCTCCAGAGCTTTATCAAG +
Preference number: 4 (lower is better)
Translates to: DSRCPHLQYQTQQDSKYKQCWLC*LQSFIK
Trigger: CTTGATAAAGCTCTGGAGCCAACAGAGCCAGCATTG...TTTGTATTTGGAGTCTTGCTGTGTCTGGTATTGGAGGTGTGGACACCTTGAGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp TGGCAACTCTCCGAGACACCCAATCTTCCAAAAGAAAAGAACTTAGATGGCTCCAACATCAAAAGCCACTaGGAATGTCTGCCCACACAC +
Preference number: 4 (lower is better)
Translates to: WQLSETPNLPKEKNLDGSNIKSH*ECLPTH
Trigger: GTGTGTGGGCAGACATTCCCAGTGGCTTTTGATGTT...GGAGCCATCTAAGTTCTTTTCTTTTGGAAGATTGGGTGTCTCGGAGAGTTGCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp TGTACATATGGCTCAGCTTGTGGACGGGAACAGGGCCTAGTGTACATGTTCCTGTTATGCTTCTTCATGTaGCTCTCAACATCAAAAGCC +
Preference number: 4 (lower is better)
Translates to: CTYGSACGREQGLVYMFLLCFFM*LSTSKA
Trigger: GGCTTTTGATGTTGAGAGCCACATGAAGAAGCATAA...CAGGAACATGTACACTAGGCCCTGTTCCCGTCCACAAGCTGAGCCATATGTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp CGCCCAACGGCTCCCACTCGTTTTTATTGCTATTTGGTACAAAGGTTAACAGAAGGTGAGAGAACACTCTaGAAGACAGAAGGCATCTCC +
Preference number: 4 (lower is better)
Translates to: RPTAPTRFYCYLVQRLTEGERTL*KTEGIS
Trigger: GGAGATGCCTTCTGTCTTCCAGAGTGTTCTCTCACC...TTCTGTTAACCTTTGTACCAAATAGCAATAAAAACGAGTGGGAGCCGTTGGGCG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR TCA 90 bp GTGCGCTCTCAGAAGATGAACCAATGTATGATTCCGTGGAAGTGTGTACTTGCATGTACTACCTGCAGTTaGTCTGGGTCTCAAGTTCAA +
Preference number: 4 (lower is better)
Translates to: VRSQKMNQCMIPWKCVLACTTCS*SGSQVQ
Trigger: TTGAACTTGAGACCCAGATCAACTGCAGGTAGTACA...TGCAAGTACACACTTCCACGGAATCATACATTGGTTCATCTTCTGAGAGCGCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR TCA 90 bp GTGTCAACATTTCGTTCCATCAGCAATGTGAAGACAAACAATAGACTCAGTGAGGCTTCCTTCTTGGCCTaGCTCTTTCACCTCTTCCTG +
Preference number: 4 (lower is better)
Translates to: VSTFRSISNVKTNNRLSEASFLA*LFHLFL
Trigger: CAGGAAGAGGTGAAAGAGTCAGGCCAAGAAGGAAGC...CTCACTGAGTCTATTGTTTGTCTTCACATTGCTGATGGAACGAAATGTTGACAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp GTGTCAACATTTCGTTCCATCAGCAATGTGAAGACAAACAATAGACTCAGTGAGGAGAGAAGACCTGGCTaGAGAACATGCAATCCAGGG +
Preference number: 4 (lower is better)
Translates to: VSTFRSISNVKTNNRLSEERRPG*RTCNPG
Trigger: CCCTGGATTGCATGTTCTGCAGCCAGGTCTTCTCTC...CTCACTGAGTCTATTGTTTGTCTTCACATTGCTGATGGAACGAAATGTTGACAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp GTGCGCTCTCAGAAGATGAACCAATGTATGATTCCGTGGAAGTGTGTACTTGCAAATCCTGAGTATCGTTaGTGTGTGCTGGTGAGAGAA +
Preference number: 4 (lower is better)
Translates to: VRSQKMNQCMIPWKCVLANPEYR*CVLVRE
Trigger: TTCTCTCACCAGCACACAGCAACGATACTCAGGATT...TGCAAGTACACACTTCCACGGAATCATACATTGGTTCATCTTCTGAGAGCGCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp AAAAGATCTTCCTACAAGAGCAGACACATCTCAACCCAGGTCTCCATTCAACACAACATCAAAAGCCACTaGGAATGTCTGCCCACACAC +
Preference number: 4 (lower is better)
Translates to: KRSSYKSRHISTQVSIQHNIKSH*ECLPTH
Trigger: GTGTGTGGGCAGACATTCCCAGTGGCTTTTGATGTT...GTGTTGAATGGAGACCTGGGTTGAGATGTGTCTGCTCTTGTAGGAAGATCTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp AGCTTATGTACATATGGCTCAGCTTGTGGACGGGAACAGGGCCTAGTGTACATGTTATGCTTCTTCATGTaGCTCTCAACATCAAAAGCC +
Preference number: 4 (lower is better)
Translates to: SLCTYGSACGREQGLVYMLCFFM*LSTSKA
Trigger: GGCTTTTGATGTTGAGAGCCACATGAAGAAGCATAA...CATGTACACTAGGCCCTGTTCCCGTCCACAAGCTGAGCCATATGTACATAAGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
3UTR CAA 72 bp TGCTCCTCTCAGGTCTATGTACAGTTCAGTCACAGCTaGTTCAGTAGCTATTGTGCGCTCTCAGAAGATGAA +
Preference number: 4 (lower is better)
Translates to: CSSQVYVQFSHS*FSSYCALSEDE
Trigger: TTCATCTTCTGAGAGCGCACAATAGCTACTGAACAAGCTGTGACTGAACTGTACATAGACCTGAGAGGAGCA
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp TCTCGAGAACGAGCTTCCTGTACACTCACTGCATTTAGGCAAAGATGGTGTCAATTTAAATTTTTGGTCTaGGCACTGTCAGCAGCCGTT +
Preference number: 4 (lower is better)
Translates to: SRERASCTLTAFRQRWCQFKFLV*ALSAAV
Trigger: AACGGCTGCTGACAGTGCGCAGACCAAAAATTTAAA...TTGACACCATCTTTGCCTAAATGCAGTGAGTGTACAGGAAGCTCGTTCTCGAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp AAAAGATCTTCCTACAAGAGCAGACACATCTCAACCCAGGTCTCCATTCAACACAATCCTGAGTATCGTTaGTGTGTGCTGGTGAGAGAA +
Preference number: 4 (lower is better)
Translates to: KRSSYKSRHISTQVSIQHNPEYR*CVLVRE
Trigger: TTCTCTCACCAGCACACAGCAACGATACTCAGGATT...GTGTTGAATGGAGACCTGGGTTGAGATGTGTCTGCTCTTGTAGGAAGATCTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp CTCCAAATACAAACGATTTCCCTAAGCTTTCCACTCCCTTTAAAAATTGCTTCCACTCTTCTCCAATGCTaGCTCTGTTGGCTCCAGAGC +
Preference number: 4 (lower is better)
Translates to: LQIQTISLSFPLPLKIASTLLQC*LCWLQS
Trigger: GCTCTGGAGCCAACAGAGCCAGCATTGGAGAAGAGT...GGAAGCAATTTTTAAAGGGAGTGGAAAGCTTAGGGAAATCGTTTGTATTTGGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp CTCCAAATACAAACGATTTCCCTAAGCTTTCCACTCCCTTTAAAAATTGCTTCCGAGGCTCTGCTTATTTaGGAAGAGGAAGCCGCAGAC +
Preference number: 4 (lower is better)
Translates to: LQIQTISLSFPLPLKIASEALLI*EEEAAD
Trigger: GTCTGCGGCTTCCTCTTCCCAAATAAGCAGAGCCTC...GGAAGCAATTTTTAAAGGGAGTGGAAAGCTTAGGGAAATCGTTTGTATTTGGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp GACTCAAGGTGTCCACACCTCCAATACCAGACACAGCAAGACTCCAAATACAAATGCTTTTACTTGTTTTaGACTTTCCAGACCCTTCCG +
Preference number: 4 (lower is better)
Translates to: DSRCPHLQYQTQQDSKYKCFYLF*TFQTLP
Trigger: CGGAAGGGTCTGGAAAGTCCAAAACAAGTAAAAGCA...TTTGTATTTGGAGTCTTGCTGTGTCTGGTATTGGAGGTGTGGACACCTTGAGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp TGGCAACTCTCCGAGACACCCAATCTTCCAAAAGAAAAGAACTTAGATGGCTCCTGCTTTTACTTGTTTTaGACTTTCCAGACCCTTCCG +
Preference number: 4 (lower is better)
Translates to: WQLSETPNLPKEKNLDGSCFYLF*TFQTLP
Trigger: CGGAAGGGTCTGGAAAGTCCAAAACAAGTAAAAGCA...GGAGCCATCTAAGTTCTTTTCTTTTGGAAGATTGGGTGTCTCGGAGAGTTGCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp CTCCAAATACAAACGATTTCCCTAAGCTTTCCACTCCCTTTAAAAATTGCTTCCACTCAGAACAGTGCGTaGGCTTCTCCTTGCTACTGG +
Preference number: 4 (lower is better)
Translates to: LQIQTISLSFPLPLKIASTQNSA*ASPCYW
Trigger: CCAGTAGCAAGGAGAAGCCCACGCACTGTTCTGAGT...GGAAGCAATTTTTAAAGGGAGTGGAAAGCTTAGGGAAATCGTTTGTATTTGGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR TCA 90 bp AAGACTCCAAATACAAACGATTTCCCTAAGCTTTCCACTCCCTTTAAAAATTGCGCTTCCTTCTTGGCCTaGCTCTTTCACCTCTTCCTG +
Preference number: 4 (lower is better)
Translates to: KTPNTNDFPKLSTPFKNCASFLA*LFHLFL
Trigger: CAGGAAGAGGTGAAAGAGTCAGGCCAAGAAGGAAGC...GCAATTTTTAAAGGGAGTGGAAAGCTTAGGGAAATCGTTTGTATTTGGAGTCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR TCA 90 bp GTGTCAACATTTCGTTCCATCAGCAATGTGAAGACAAACAATAGACTCAGTGAGCTGTTAGATAGGTGCTaGTGTGACACAGGCCTCTTT +
Preference number: 4 (lower is better)
Translates to: VSTFRSISNVKTNNRLSELLDRC*CDTGLF
Trigger: AAAGAGGCCTGTGTCACATCAGCACCTATCTAACAG...CTCACTGAGTCTATTGTTTGTCTTCACATTGCTGATGGAACGAAATGTTGACAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp AAGACTCCAAATACAAACGATTTCCCTAAGCTTTCCACTCCCTTTAAAAATTGCGGTCAAGCTGAGGTATaGAGGTCATGGGCTTCACTG +
Preference number: 4 (lower is better)
Translates to: KTPNTNDFPKLSTPFKNCGQAEV*RSWASL
Trigger: CAGTGAAGCCCATGACCTGCATACCTCAGCTTGACC...GCAATTTTTAAAGGGAGTGGAAAGCTTAGGGAAATCGTTTGTATTTGGAGTCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp TCTCGAGAACGAGCTTCCTGTACACTCACTGCATTTAGGCAAAGATGGTGTCAATTGAACGGAAAAACTTaGCACAGTAACTACACTCTC +
Preference number: 4 (lower is better)
Translates to: SRERASCTLTAFRQRWCQLNGKT*HSNYTL
Trigger: GAGAGTGTAGTTACTGTGGCAAGTTTTTCCGTTCAA...TTGACACCATCTTTGCCTAAATGCAGTGAGTGTACAGGAAGCTCGTTCTCGAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp TGGCAACTCTCCGAGACACCCAATCTTCCAAAAGAAAAGAACTTAGATGGCTCCATCTCTTTAAATTTTTaGTCTGCGCACTGTCAGCAG +
Preference number: 4 (lower is better)
Translates to: WQLSETPNLPKEKNLDGSISLNF*SAHCQQ
Trigger: CTGCTGACAGTGCGCAGACCAAAAATTTAAAGAGAT...GGAGCCATCTAAGTTCTTTTCTTTTGGAAGATTGGGTGTCTCGGAGAGTTGCCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR TCA 90 bp GACTCAAGGTGTCCACACCTCCAATACCAGACACAGCAAGACTCCAAATACAAAATTGAGGTAATAGTTTaGACGGAAAAACTTGCCACA +
Preference number: 4 (lower is better)
Translates to: DSRCPHLQYQTQQDSKYKIEVIV*TEKLAT
Trigger: TGTGGCAAGTTTTTCCGTTCAAACTATTACCTCAAT...TTTGTATTTGGAGTCTTGCTGTGTCTGGTATTGGAGGTGTGGACACCTTGAGTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp GTGTCAACATTTCGTTCCATCAGCAATGTGAAGACAAACAATAGACTCAGTGAGTCATTTTTATCCAAATaGAGCCCGTCAGGGAGTCCA +
Preference number: 4 (lower is better)
Translates to: VSTFRSISNVKTNNRLSESFLSK*SPSGSP
Trigger: TGGACTCCCTGACGGGCTCCATTTGGATAAAAATGA...CTCACTGAGTCTATTGTTTGTCTTCACATTGCTGATGGAACGAAATGTTGACAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp CGCCCAACGGCTCCCACTCGTTTTTATTGCTATTTGGTACAAAGGTTAACAGAAATCTCTTTAAATTTTTaGTCTGCGCACTGTCAGCAG +
Preference number: 4 (lower is better)
Translates to: RPTAPTRFYCYLVQRLTEISLNF*SAHCQQ
Trigger: CTGCTGACAGTGCGCAGACCAAAAATTTAAAGAGAT...TTCTGTTAACCTTTGTACCAAATAGCAATAAAAACGAGTGGGAGCCGTTGGGCG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp AAGACTCCAAATACAAACGATTTCCCTAAGCTTTCCACTCCCTTTAAAAATTGCTACTTGGGGCTAAAGTaGTGTTGTCTGGTCCTGAAG +
Preference number: 4 (lower is better)
Translates to: KTPNTNDFPKLSTPFKNCYLGLK*CCLVLK
Trigger: CTTCAGGACCAGACAACAGCACTTTAGCCCCAAGTA...GCAATTTTTAAAGGGAGTGGAAAGCTTAGGGAAATCGTTTGTATTTGGAGTCTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp AAGACTCCAAATACAAACGATTTCCCTAAGCTTTCCACTCCCTTTAAAAATTGCGCTTCTCCTTGCTACTaGACAACTTGGGGTCACTAT +
Preference number: 4 (lower is better)
Translates to: KTPNTNDFPKLSTPFKNCASPCY*TTWGHY
Trigger: ATAGTGACCCCAAGTTGTCCAGTAGCAAGGAGAAGC...GCAATTTTTAAAGGGAGTGGAAAGCTTAGGGAAATCGTTTGTATTTGGAGTCTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp GTGTCAACATTTCGTTCCATCAGCAATGTGAAGACAAACAATAGACTCAGTGAGTTGAACGGAAAAACTTaGCACAGTAACTACACTCTC +
Preference number: 4 (lower is better)
Translates to: VSTFRSISNVKTNNRLSELNGKT*HSNYTL
Trigger: GAGAGTGTAGTTACTGTGGCAAGTTTTTCCGTTCAA...CTCACTGAGTCTATTGTTTGTCTTCACATTGCTGATGGAACGAAATGTTGACAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR GCA 90 bp AAGACTCCAAATACAAACGATTTCCCTAAGCTTTCCACTCCCTTTAAAAATTGCCTCAGCACTATCAGCTaGATGTTTATGGAAATCCTG +
Preference number: 4 (lower is better)
Translates to: KTPNTNDFPKLSTPFKNCLSTIS*MFMEIL
Trigger: CAGGATTTCCATAAACATGCAGCTGATAGTGCTGAG...GCAATTTTTAAAGGGAGTGGAAAGCTTAGGGAAATCGTTTGTATTTGGAGTCTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CCA 90 bp AAGACTCCAAATACAAACGATTTCCCTAAGCTTTCCACTCCCTTTAAAAATTGCTACCTGCAGTTGATCTaGGTCTCAAGTTCAAAAACT +
Preference number: 4 (lower is better)
Translates to: KTPNTNDFPKLSTPFKNCYLQLI*VSSSKT
Trigger: AGTTTTTGAACTTGAGACCCAGATCAACTGCAGGTA...GCAATTTTTAAAGGGAGTGGAAAGCTTAGGGAAATCGTTTGTATTTGGAGTCTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR TCA 90 bp AAGACTCCAAATACAAACGATTTCCCTAAGCTTTCCACTCCCTTTAAAAATTGCATTGAGGTAATAGTTTaGACGGAAAAACTTGCCACA +
Preference number: 4 (lower is better)
Translates to: KTPNTNDFPKLSTPFKNCIEVIV*TEKLAT
Trigger: TGTGGCAAGTTTTTCCGTTCAAACTATTACCTCAAT...GCAATTTTTAAAGGGAGTGGAAAGCTTAGGGAAATCGTTTGTATTTGGAGTCTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 90 bp GGTGCTTTGCTTGGCCCCGAGGCCCCCTGCCGAGCCTTCTCTGAGTaGAGGGACTTCGAGTGTGGTGAGAAGGCAGTCTTGGCCTTGGGC +
Preference number: 5 (lower is better)
Translates to: GALLGPEAPCRAFSE*RDFECGEKAVLALG
Trigger: GCCCAAGGCCAAGACTGCCTTCTCACCACACTCGAAGTCCCTGCACTCAGAGAAGGCTCGGCAGGGGGCCTCGGGGCCAAGCAAAGCACC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CCA 90 bp ACACTGGGTGACTCCACCTCCCCAGGGCTCAGGAAACGGGCTTTGTaGGGCAGCACAGGCGGTGGGCGCACACACTCTGGTGGTAGCAAG +
Preference number: 5 (lower is better)
Translates to: TLGDSTSPGLRKRAL*GSTGGGRTHSGGSK
Trigger: CTTGCTACCACCAGAGTGTGTGCGCCCACCGCCTGTGCTGCCCCACAAAGCCCGTTTCCTGAGCCCTGGGGAGGTGGAGTCACCCAGTGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 90 bp TGCAGAACATGCAATCCAGGGGCATGTGGCCCTCTGCCACGGCCATaGTCTTCTCCTGAGCAGCTCGGAAGGGGACTGCCACCGGCCCTT +
Preference number: 5 (lower is better)
Translates to: CRTCNPGACGPLPRP*SSPEQLGRGLPPAL
Trigger: AAGGGCCGGTGGCAGTCCCCTTCCGAGCTGCTCAGGAGAAGAGCATGGCCGTGGCAGAGGGCCACATGCCCCTGGATTGCATGTTCTGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS TCA 90 bp CTGGCTCGCAGAGGGTGGGCCGGTGCTGCAGCAGCACGTGCTGACTaGGATCCTCCGCCTGAGAGAAGACCTGGCTGCAGAACATGCAAT +
Preference number: 5 (lower is better)
Translates to: LARRGWAGAAAARAD*DPPPERRPGCRTCN
Trigger: ATTGCATGTTCTGCAGCCAGGTCTTCTCTCAGGCGGAGGATCTCAGTCAGCACGTGCTGCTGCAGCACCGGCCCACCCTCTGCGAGCCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 90 bp GAAGACCTGGCTGCAGAACATGCAATCCAGGGGCATGTGGCCCTCTaGCACGGCCATGCTCTTCTCCTGAGCAGCTCGGAAGGGGACTGC +
Preference number: 5 (lower is better)
Translates to: EDLAAEHAIQGHVAL*HGHALLLSSSEGDC
Trigger: GCAGTCCCCTTCCGAGCTGCTCAGGAGAAGAGCATGGCCGTGGCAGAGGGCCACATGCCCCTGGATTGCATGTTCTGCAGCCAGGTCTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 90 bp CTGTCTTCCAGAGTGGTGCTGAGGTCTGGGGAGCAGGTCCCAGGCTaGCTTGCATCCACAGCCATGGTGGGTGACAGGGCATCAGTCCTC +
Preference number: 5 (lower is better)
Translates to: LSSRVVLRSGEQVPG*LASTAMVGDRASVL
Trigger: GAGGACTGATGCCCTGTCACCCACCATGGCTGTGGATGCAAGGCAGCCTGGGACCTGCTCCCCAGACCTCAGCACCACTCTGGAAGACAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CCA 90 bp ACAGGGGTCCAGAGGCACTGTAGGGCTTCTGCACAGCCAACACACTaGGTGACTCCACCTCCCCAGGGCTCAGGAAACGGGCTTTGTGGG +
Preference number: 5 (lower is better)
Translates to: TGVQRHCRASAQPTH*VTPPPQGSGNGLCG
Trigger: CCCACAAAGCCCGTTTCCTGAGCCCTGGGGAGGTGGAGTCACCCAGTGTGTTGGCTGTGCAGAAGCCCTACAGTGCCTCTGGACCCCTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CAA 90 bp GGCTGTCCTCCCTCCATCTCGAGCTGCCTGTGCACTGAGGAAATCACCCTGGGACTCAGGAAACGGGCTTaGTGGGGCAGCACAGGCGGT +
Preference number: 5 (lower is better)
Translates to: GCPPSISSCLCTEEITLGLRKRA*WGSTGG
Trigger: ACCGCCTGTGCTGCCCCACAAAGCCCGTTTCCTGAG...TCCCAGGGTGATTTCCTCAGTGCACAGGCAGCTCGAGATGGAGGGAGGACAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 90 bp CTCTGCCACGGCCATGCTCTTCTCCTGAGCAGCTCGGAAGGGGACTaGCACCGGCCCTTTTATGGGCACAGCATCATCCACCTCCATCTG +
Preference number: 5 (lower is better)
Translates to: LCHGHALLLSSSEGD*HRPFYGHSIIHLHL
Trigger: CAGATGGAGGTGGATGATGCTGTGCCCATAAAAGGGCCGGTGGCAGTCCCCTTCCGAGCTGCTCAGGAGAAGAGCATGGCCGTGGCAGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 90 bp ACAGCCATGGTGGGTGACAGGGCATCAGTCCTCCTGTCCTTCCTGTaGACCCTCGAGTGCAGGACGAGCTGGTGGTATGTCCTGAAGGCT +
Preference number: 5 (lower is better)
Translates to: TAMVGDRASVLLSFL*TLECRTSWWYVLKA
Trigger: AGCCTTCAGGACATACCACCAGCTCGTCCTGCACTCGAGGGTGCACAGGAAGGACAGGAGGACTGATGCCCTGTCACCCACCATGGCTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CCA 90 bp GTCCTCCTGTCCTTCCTGTGCACCCTCGAGTGCAGGACGAGCTGGTaGTATGTCCTGAAGGCTTTGCTGCACTCAGAACAGTGCGTGGGC +
Preference number: 5 (lower is better)
Translates to: VLLSFLCTLECRTSW*YVLKALLHSEQCVG
Trigger: GCCCACGCACTGTTCTGAGTGCAGCAAAGCCTTCAGGACATACCACCAGCTCGTCCTGCACTCGAGGGTGCACAGGAAGGACAGGAGGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CCA 90 bp CAGCAGGGACGCCACCTTTGGGAAACAACTCTGACTGCTGCTGCCTaGTGGCACTGGTGCCCCCAGCATTGGGTTGTGACCTGTGTGACT +
Preference number: 5 (lower is better)
Translates to: QQGRHLWETTLTAAA*WHWCPQHWVVTCVT
Trigger: AGTCACACAGGTCACAACCCAATGCTGGGGGCACCAGTGCCACCAGGCAGCAGCAGTCAGAGTTGTTTCCCAAAGGTGGCGTCCCTGCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS TCA 90 bp CCTTCCTGTGCACCCTCGAGTGCAGGACGAGCTGGTGGTATGTCCTaGAGGCTTTGCTGCACTCAGAACAGTGCGTGGGCTTCTCCTTGC +
Preference number: 5 (lower is better)
Translates to: PSCAPSSAGRAGGMS*RLCCTQNSAWASPC
Trigger: GCAAGGAGAAGCCCACGCACTGTTCTGAGTGCAGCAAAGCCTTCAGGACATACCACCAGCTCGTCCTGCACTCGAGGGTGCACAGGAAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 90 bp GGTGACAGGGCATCAGTCCTCCTGTCCTTCCTGTGCACCCTCGAGTaGAGGACGAGCTGGTGGTATGTCCTGAAGGCTTTGCTGCACTCA +
Preference number: 5 (lower is better)
Translates to: GDRASVLLSFLCTLE*RTSWWYVLKALLHS
Trigger: TGAGTGCAGCAAAGCCTTCAGGACATACCACCAGCTCGTCCTGCACTCGAGGGTGCACAGGAAGGACAGGAGGACTGATGCCCTGTCACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 90 bp CTTCCCGTGCTAAGGACCCAACCCCCTCTAGTCTGCAGACAGGGCTaGTGGCCTGAGGCTCCCCTGCTTTCTTTCTCTGCATGTCCAGAT +
Preference number: 5 (lower is better)
Translates to: LPVLRTQPPLVCRQG*WPEAPLLSFSACPD
Trigger: ATCTGGACATGCAGAGAAAGAAAGCAGGGGAGCCTCAGGCCAGCAGCCCTGTCTGCAGACTAGAGGGGGTTGGGTCCTTAGCACGGGAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 90 bp ATAGCAGCAGGGACGCCACCTTTGGGAAACAACTCTGACTGCTGCTaGCTGGTGGCACTGGTGCCCCCAGCATTGGGTTGTGACCTGTGT +
Preference number: 5 (lower is better)
Translates to: IAAGTPPLGNNSDCC*LVALVPPALGCDLC
Trigger: ACACAGGTCACAACCCAATGCTGGGGGCACCAGTGCCACCAGGCAGCAGCAGTCAGAGTTGTTTCCCAAAGGTGGCGTCCCTGCTGCTAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CCA 90 bp CAGGGACGCCACCTTTGGGAAACAACTCTGACTGCTGCTGCCTGGTaGCACTGGTGCCCCCAGCATTGGGTTGTGACCTGTGTGACTTCA +
Preference number: 5 (lower is better)
Translates to: QGRHLWETTLTAAAW*HWCPQHWVVTCVTS
Trigger: TGAAGTCACACAGGTCACAACCCAATGCTGGGGGCACCAGTGCCACCAGGCAGCAGCAGTCAGAGTTGTTTCCCAAAGGTGGCGTCCCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CAA 90 bp GTCCTCCCTCCATCTCGAGCTGCCTGTGCACTGAGGAAATCACCCTGGGAAACAGTCTTGGCCTTGGGCTaGTGCAGGCCAGACAAGGGA +
Preference number: 5 (lower is better)
Translates to: VLPPSRAACALRKSPWETVLALG*CRPDKG
Trigger: TCCCTTGTCTGGCCTGCACAAGCCCAAGGCCAAGAC...TGTTTCCCAGGGTGATTTCCTCAGTGCACAGGCAGCTCGAGATGGAGGGAGGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CAA 90 bp GGCTGTCCTCCCTCCATCTCGAGCTGCCTGTGCACTGAGGAAATCACCCTGGGAGGGGCTAAAGTGCTGTaGTCTGGTCCTGAAGTCTGG +
Preference number: 5 (lower is better)
Translates to: GCPPSISSCLCTEEITLGGAKVL*SGPEVW
Trigger: CCAGACTTCAGGACCAGACAACAGCACTTTAGCCCC...TCCCAGGGTGATTTCCTCAGTGCACAGGCAGCTCGAGATGGAGGGAGGACAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CAA 90 bp GTCCTCCCTCCATCTCGAGCTGCCTGTGCACTGAGGAAATCACCCTGGGAAACAGTAGTAGTCTCTCCCTaGCTGTGCCCATGGGCCGTC +
Preference number: 5 (lower is better)
Translates to: VLPPSRAACALRKSPWETVVVSP*LCPWAV
Trigger: GACGGCCCATGGGCACAGCAAGGGAGAGACTACTAC...TGTTTCCCAGGGTGATTTCCTCAGTGCACAGGCAGCTCGAGATGGAGGGAGGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS TCA 90 bp CATTGGTCCCTGCATGCTCTGTGTCCAGGGACACCGCACTGGACTTaGGTCTTTTGGGATGTGGCTCACTGTACTCTGCTGCGGCACTGC +
Preference number: 5 (lower is better)
Translates to: HWSLHALCPGTPHWT*VFWDVAHCTLLRHC
Trigger: GCAGTGCCGCAGCAGAGTACAGTGAGCCACATCCCAAAAGACTCAAGTCCAGTGCGGTGTCCCTGGACACAGAGCATGCAGGGACCAATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 90 bp AAATTTTTGGTCTGCGCACTGTCAGCAGCCGTTAGTAGCGCATCCTaGGGCTCCTGGCTCCGGCCTTCACTTTTGGACTCAGCGGCAGCA +
Preference number: 5 (lower is better)
Translates to: KFLVCALSAAVSSAS*GSWLRPSLLDSAAA
Trigger: TGCTGCCGCTGAGTCCAAAAGTGAAGGCCGGAGCCAGGAGCCGCAGGATGCGCTACTAACGGCTGCTGACAGTGCGCAGACCAAAAATTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 90 bp AGGGACTTCGAGTGTGGTGAGAAGGCAGTCTTGGCCTTGGGCTTGTaGAGGCCAGACAAGGGAGGGACATCTTTTCCCAGCAAAGCCGGA +
Preference number: 5 (lower is better)
Translates to: RDFECGEKAVLALGL*RPDKGGTSFPSKAG
Trigger: TCCGGCTTTGCTGGGAAAAGATGTCCCTCCCTTGTCTGGCCTGCACAAGCCCAAGGCCAAGACTGCCTTCTCACCACACTCGAAGTCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CCA 90 bp TCAGTCCTCCTGTCCTTCCTGTGCACCCTCGAGTGCAGGACGAGCTaGTGGTATGTCCTGAAGGCTTTGCTGCACTCAGAACAGTGCGTG +
Preference number: 5 (lower is better)
Translates to: SVLLSFLCTLECRTS*WYVLKALLHSEQCV
Trigger: CACGCACTGTTCTGAGTGCAGCAAAGCCTTCAGGACATACCACCAGCTCGTCCTGCACTCGAGGGTGCACAGGAAGGACAGGAGGACTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CCA 90 bp CTGAGTGCAGGGACTTCGAGTGTGGTGAGAAGGCAGTCTTGGCCTTaGGCTTGTGCAGGCCAGACAAGGGAGGGACATCTTTTCCCAGCA +
Preference number: 5 (lower is better)
Translates to: LSAGTSSVVRRQSWP*ACAGQTREGHLFPA
Trigger: TGCTGGGAAAAGATGTCCCTCCCTTGTCTGGCCTGCACAAGCCCAAGGCCAAGACTGCCTTCTCACCACACTCGAAGTCCCTGCACTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CCA 90 bp CGCCACCTTTGGGAAACAACTCTGACTGCTGCTGCCTGGTGGCACTaGTGCCCCCAGCATTGGGTTGTGACCTGTGTGACTTCAGGTTAC +
Preference number: 5 (lower is better)
Translates to: RHLWETTLTAAAWWH*CPQHWVVTCVTSGY
Trigger: GTAACCTGAAGTCACACAGGTCACAACCCAATGCTGGGGGCACCAGTGCCACCAGGCAGCAGCAGTCAGAGTTGTTTCCCAAAGGTGGCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CAA 90 bp GTCCTCCCTCCATCTCGAGCTGCCTGTGCACTGAGGAAATCACCCTGGGAAACATGCGTGGGCTTCTCCTaGCTACTGGACAACTTGGGG +
Preference number: 5 (lower is better)
Translates to: VLPPSRAACALRKSPWETCVGFS*LLDNLG
Trigger: CCCCAAGTTGTCCAGTAGCAAGGAGAAGCCCACGCA...TGTTTCCCAGGGTGATTTCCTCAGTGCACAGGCAGCTCGAGATGGAGGGAGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 90 bp CCGGTACGCCTGTTCCTCAGCACAGACTTGCTGCTGCCGTTCTTGTaGGGGTCAGGGTTGTACCTGTGCTCAAGTCTCTGGTGCATCATA +
Preference number: 5 (lower is better)
Translates to: PVRLFLSTDLLLPFL*GSGLYLCSSLWCII
Trigger: TATGATGCACCAGAGACTTGAGCACAGGTACAACCCTGACCCGCACAAGAACGGCAGCAGCAAGTCTGTGCTGAGGAACAGGCGTACCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CCA 90 bp CTCTGTGTCCAGGGACACCGCACTGGACTTGAGTCTTTTGGGATGTaGCTCACTGTACTCTGCTGCGGCACTGCCAGAATTCCGATGGCA +
Preference number: 5 (lower is better)
Translates to: LCVQGHRTGLESFGM*LTVLCCGTARIPMA
Trigger: TGCCATCGGAATTCTGGCAGTGCCGCAGCAGAGTACAGTGAGCCACATCCCAAAAGACTCAAGTCCAGTGCGGTGTCCCTGGACACAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CAA 90 bp ATTTACAGTTACCTGAGGTGCAAGCTTTACAACATCCCCTGCCCACCCCACCCCGTCTTGGCCTTGGGCTaGTGCAGGCCAGACAAGGGA +
Preference number: 5 (lower is better)
Translates to: IYSYLRCKLYNIPCPPHPVLALG*CRPDKG
Trigger: TCCCTTGTCTGGCCTGCACAAGCCCAAGGCCAAGAC...GGGGTGGGGTGGGCAGGGGATGTTGTAAAGCTTGCACCTCAGGTAACTGTAAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS TCA 90 bp GGCTGGACCACTTCATTGATGGTGACTGGACTCTCCATGCCTTGCTaGAGCTTGCTCCTGGTGCCAGACTTGCCATTGTGTGTCCGCATG +
Preference number: 5 (lower is better)
Translates to: GWTTSLMVTGLSMPC*SLLLVPDLPLCVRM
Trigger: CATGCGGACACACAATGGCAAGTCTGGCACCAGGAGCAAGCTTCAGCAAGGCATGGAGAGTCCAGTCACCATCAATGAAGTGGTCCAGCC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 90 bp CTCTTCCTGGGCAACGGCCACTTTTCCTTTGGTAGCCAACTGCCATaGCTGGTAGGTGGTGAACGGGTCAAGCTGAGGTATGCAGGTCAT +
Preference number: 5 (lower is better)
Translates to: LFLGNGHFSFGSQLP*LVGGERVKLRYAGH
Trigger: ATGACCTGCATACCTCAGCTTGACCCGTTCACCACCTACCAGGCATGGCAGTTGGCTACCAAAGGAAAAGTGGCCGTTGCCCAGGAAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 90 bp CACCGCACTGGACTTGAGTCTTTTGGGATGTGGCTCACTGTACTCTaGTGCGGCACTGCCAGAATTCCGATGGCAGTAGTAGTCTCTCCC +
Preference number: 5 (lower is better)
Translates to: HRTGLESFGMWLTVL*CGTARIPMAVVVSP
Trigger: GGGAGAGACTACTACTGCCATCGGAATTCTGGCAGTGCCGCAGCAGAGTACAGTGAGCCACATCCCAAAAGACTCAAGTCCAGTGCGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 90 bp CACATGGTACTTGGGGAGCTCAAAGCCCCTTCTGCCATTGGTCCCTaGATGCTCTGTGTCCAGGGACACCGCACTGGACTTGAGTCTTTT +
Preference number: 5 (lower is better)
Translates to: HMVLGELKAPSAIGP*MLCVQGHRTGLESF
Trigger: AAAAGACTCAAGTCCAGTGCGGTGTCCCTGGACACAGAGCATGCAGGGACCAATGGCAGAAGGGGCTTTGAGCTCCCCAAGTACCATGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CCA 90 bp ATGCTGGGGATCAGACACTTGCTCAAAGAGATTGCAGGACAGGCGTaGAGCGGCCCAAGGGATAGATTCAAAGGCCTGTCCTGGCAGTCA +
Preference number: 5 (lower is better)
Translates to: MLGIRHLLKEIAGQA*SGPRDRFKGLSWQS
Trigger: TGACTGCCAGGACAGGCCTTTGAATCTATCCCTTGGGCCGCTCCACGCCTGTCCTGCAATCTCTTTGAGCAAGTGTCTGATCCCCAGCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CAA 90 bp TGGCAACTCTCCGAGACACCCAATCTTCCAAAAGAAAAGAACTTAGATGGCTCCGAAGTCTGGGGTGCTTaGCTTGGCCCCGAGGCCCCC +
Preference number: 5 (lower is better)
Translates to: WQLSETPNLPKEKNLDGSEVWGA*LGPEAP
Trigger: GGGGGCCTCGGGGCCAAGCAAAGCACCCCAGACTTC...GGAGCCATCTAAGTTCTTTTCTTTTGGAAGATTGGGTGTCTCGGAGAGTTGCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CAA 90 bp GGCTGTCCTCCCTCCATCTCGAGCTGCCTGTGCACTGAGGAAATCACCCTGGGAGTGACTTCAGGTTACTaGGGGCTAAAGTGCTGTTGT +
Preference number: 5 (lower is better)
Translates to: GCPPSISSCLCTEEITLGVTSGY*GLKCCC
Trigger: ACAACAGCACTTTAGCCCCAAGTAACCTGAAGTCAC...TCCCAGGGTGATTTCCTCAGTGCACAGGCAGCTCGAGATGGAGGGAGGACAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS TCA 90 bp TCACTTTTGGACTCAGCGGCAGCATCCACCGGCTGCTTGTCTTTGTaGTGTCTCTCCAAGTGGTACCTCAGAGATGTCTTCTGGGCTGCG +
Preference number: 5 (lower is better)
Translates to: SLLDSAAASTGCLSL*CLSKWYLRDVFWAA
Trigger: CGCAGCCCAGAAGACATCTCTGAGGTACCACTTGGAGAGACATCACAAAGACAAGCAGCCGGTGGATGCTGCCGCTGAGTCCAAAAGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 90 bp CGCACTGGACTTGAGTCTTTTGGGATGTGGCTCACTGTACTCTGCTaGGGCACTGCCAGAATTCCGATGGCAGTAGTAGTCTCTCCCTTG +
Preference number: 5 (lower is better)
Translates to: RTGLESFGMWLTVLC*GTARIPMAVVVSPL
Trigger: CAAGGGAGAGACTACTACTGCCATCGGAATTCTGGCAGTGCCGCAGCAGAGTACAGTGAGCCACATCCCAAAAGACTCAAGTCCAGTGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CAA 90 bp GTCCTCCCTCCATCTCGAGCTGCCTGTGCACTGAGGAAATCACCCTGGGAAACAGAGCATGAGTCGTCATaGTCTGTGCTTCCTTCTTGG +
Preference number: 5 (lower is better)
Translates to: VLPPSRAACALRKSPWETEHESS*SVLPSW
Trigger: CCAAGAAGGAAGCACAGACAATGACGACTCATGCTC...TGTTTCCCAGGGTGATTTCCTCAGTGCACAGGCAGCTCGAGATGGAGGGAGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CAA 90 bp GTCCTCCCTCCATCTCGAGCTGCCTGTGCACTGAGGAAATCACCCTGGGAAACACTGGGGATCAGACACTaGCTCAAAGAGATTGCAGGA +
Preference number: 5 (lower is better)
Translates to: VLPPSRAACALRKSPWETLGIRH*LKEIAG
Trigger: TCCTGCAATCTCTTTGAGCAAGTGTCTGATCCCCAG...TGTTTCCCAGGGTGATTTCCTCAGTGCACAGGCAGCTCGAGATGGAGGGAGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS TCA 90 bp TGGCACTGGGGACAGTTTCTTTGGCGTGAACCTTGCTGTGCTCAATaGGGCTCTGCTTATTTGGGAAGAGGAAGCCGCAGACCATGCAGA +
Preference number: 5 (lower is better)
Translates to: WHWGQFLWREPCCAQ*GSAYLGRGSRRPCR
Trigger: TCTGCATGGTCTGCGGCTTCCTCTTCCCAAATAAGCAGAGCCTCATTGAGCACAGCAAGGTTCACGCCAAAGAAACTGTCCCCAGTGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS TCA 90 bp TCATCAGGGGCAACGTTGCTGGCACTGGGGACAGTTTCTTTGGCGTaGACCTTGCTGTGCTCAATGAGGCTCTGCTTATTTGGGAAGAGG +
Preference number: 5 (lower is better)
Translates to: SSGATLLALGTVSLA*TLLCSMRLCLFGKR
Trigger: CCTCTTCCCAAATAAGCAGAGCCTCATTGAGCACAGCAAGGTTCACGCCAAAGAAACTGTCCCCAGTGCCAGCAACGTTGCCCCTGATGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CAA 90 bp TGTACATATGGCTCAGCTTGTGGACGGGAACAGGGCCTAGTGTACATGTTCCTGGGCTGGACCACTTCATaGATGGTGACTGGACTCTCC +
Preference number: 5 (lower is better)
Translates to: CTYGSACGREQGLVYMFLGWTTS*MVTGLS
Trigger: GGAGAGTCCAGTCACCATCAATGAAGTGGTCCAGCC...CAGGAACATGTACACTAGGCCCTGTTCCCGTCCACAAGCTGAGCCATATGTACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CAA 90 bp AGCTTATGTACATATGGCTCAGCTTGTGGACGGGAACAGGGCCTAGTGTACATGAAGCCCCTTCTGCCATaGGTCCCTGCATGCTCTGTG +
Preference number: 5 (lower is better)
Translates to: SLCTYGSACGREQGLVYMKPLLP*VPACSV
Trigger: CACAGAGCATGCAGGGACCAATGGCAGAAGGGGCTT...CATGTACACTAGGCCCTGTTCCCGTCCACAAGCTGAGCCATATGTACATAAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CAA 90 bp GTGCGCTCTCAGAAGATGAACCAATGTATGATTCCGTGGAAGTGTGTACTTGCACTCAGGAAACGGGCTTaGTGGGGCAGCACAGGCGGT +
Preference number: 5 (lower is better)
Translates to: VRSQKMNQCMIPWKCVLALRKRA*WGSTGG
Trigger: ACCGCCTGTGCTGCCCCACAAAGCCCGTTTCCTGAG...TGCAAGTACACACTTCCACGGAATCATACATTGGTTCATCTTCTGAGAGCGCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 90 bp TTCACTGTACTACCTGCAGTTGATCTGGGTCTCAAGTTCAAAAACTaGAGCAACTCTTCCCTCGGGGACGTGGGTTCCTCTCGGTGGTCA +
Preference number: 5 (lower is better)
Translates to: FTVLPAVDLGLKFKN*SNSSLGDVGSSRWS
Trigger: TGACCACCGAGAGGAACCCACGTCCCCGAGGGAAGAGTTGCTGCAGTTTTTGAACTTGAGACCCAGATCAACTGCAGGTAGTACAGTGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CCA 90 bp GGAGTCCTTATGCTTCTTCATGTGGCTCTCAACATCAAAAGCCACTaGGAATGTCTGCCCACACACATCACAGCTCAACTCCTCGGGGTC +
Preference number: 5 (lower is better)
Translates to: GVLMLLHVALNIKSH*ECLPTHITAQLLGV
Trigger: GACCCCGAGGAGTTGAGCTGTGATGTGTGTGGGCAGACATTCCCAGTGGCTTTTGATGTTGAGAGCCACATGAAGAAGCATAAGGACTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CCA 90 bp GAGGTATGCAGGTCATGGGCTTCACTGTACTACCTGCAGTTGATCTaGGTCTCAAGTTCAAAAACTGCAGCAACTCTTCCCTCGGGGACG +
Preference number: 5 (lower is better)
Translates to: EVCRSWASLYYLQLI*VSSSKTAATLPSGT
Trigger: CGTCCCCGAGGGAAGAGTTGCTGCAGTTTTTGAACTTGAGACCCAGATCAACTGCAGGTAGTACAGTGAAGCCCATGACCTGCATACCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CAA 90 bp GGCTGTCCTCCCTCCATCTCGAGCTGCCTGTGCACTGAGGAAATCACCCTGGGAAATCTCTTTAAATTTTaGGTCTGCGCACTGTCAGCA +
Preference number: 5 (lower is better)
Translates to: GCPPSISSCLCTEEITLGNLFKF*VCALSA
Trigger: TGCTGACAGTGCGCAGACCAAAAATTTAAAGAGATT...TCCCAGGGTGATTTCCTCAGTGCACAGGCAGCTCGAGATGGAGGGAGGACAGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CAA 90 bp CCAGGTCTCCATTCAACACAAGAGGTAAGACATTTCCCAAGGACCCCTCATGGTGGGGCTAAAGTGCTGTaGTCTGGTCCTGAAGTCTGG +
Preference number: 5 (lower is better)
Translates to: PGLHSTQEVRHFPRTPHGGAKVL*SGPEVW
Trigger: CCAGACTTCAGGACCAGACAACAGCACTTTAGCCCC...ACCATGAGGGGTCCTTGGGAAATGTCTTACCTCTTGTGTTGAATGGAGACCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CAA 90 bp TGTACATATGGCTCAGCTTGTGGACGGGAACAGGGCCTAGTGTACATGTTCCTGAGGCTTCTCTTTGTCTaGGGAGAGACCTGGACAACT +
Preference number: 5 (lower is better)
Translates to: CTYGSACGREQGLVYMFLRLLFV*GETWTT
Trigger: AGTTGTCCAGGTCTCTCCCAAGACAAAGAGAAGCCT...CAGGAACATGTACACTAGGCCCTGTTCCCGTCCACAAGCTGAGCCATATGTACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CAA 90 bp CCAGGTCTCCATTCAACACAAGAGGTAAGACATTTCCCAAGGACCCCTCATGGTATCTCCTTAAGCTGCTaGGCAGGTGGGCTTCCCTTA +
Preference number: 5 (lower is better)
Translates to: PGLHSTQEVRHFPRTPHGISLSC*AGGLPL
Trigger: TAAGGGAAGCCCACCTGCCAAGCAGCTTAAGGAGAT...ACCATGAGGGGTCCTTGGGAAATGTCTTACCTCTTGTGTTGAATGGAGACCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CAA 90 bp GGTCTCCATTCAACACAAGAGGTAAGACATTTCCCAAGGACCCCTCATGGTACATTCCTCAGCACAGACTaGCTGCTGCCGTTCTTGTGC +
Preference number: 5 (lower is better)
Translates to: GLHSTQEVRHFPRTPHGTFLSTD*LLPFLC
Trigger: GCACAAGAACGGCAGCAGCAAGTCTGTGCTGAGGAA...TGTACCATGAGGGGTCCTTGGGAAATGTCTTACCTCTTGTGTTGAATGGAGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS TCA 90 bp AAGCTGAGGTATGCAGGTCATGGGCTTCACTGTACTACCTGCAGTTaGTCTGGGTCTCAAGTTCAAAAACTGCAGCAACTCTTCCCTCGG +
Preference number: 5 (lower is better)
Translates to: KLRYAGHGLHCTTCS*SGSQVQKLQQLFPR
Trigger: CCGAGGGAAGAGTTGCTGCAGTTTTTGAACTTGAGACCCAGATCAACTGCAGGTAGTACAGTGAAGCCCATGACCTGCATACCTCAGCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 90 bp AATCTCCTCCCGCACATGCTGCACCCATACGTGAAGGAGTCCTTATaGTTCTTCATGTGGCTCTCAACATCAAAAGCCACTGGGAATGTC +
Preference number: 5 (lower is better)
Translates to: NLLPHMLHPYVKESL*FFMWLSTSKATGNV
Trigger: GACATTCCCAGTGGCTTTTGATGTTGAGAGCCACATGAAGAAGCATAAGGACTCCTTCACGTATGGGTGCAGCATGTGCGGGAGGAGATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CCA 90 bp CACATGCTGCACCCATACGTGAAGGAGTCCTTATGCTTCTTCATGTaGCTCTCAACATCAAAAGCCACTGGGAATGTCTGCCCACACACA +
Preference number: 5 (lower is better)
Translates to: HMLHPYVKESLCFFM*LSTSKATGNVCPHT
Trigger: TGTGTGTGGGCAGACATTCCCAGTGGCTTTTGATGTTGAGAGCCACATGAAGAAGCATAAGGACTCCTTCACGTATGGGTGCAGCATGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CAA 90 bp TCTCGAGAACGAGCTTCCTGTACACTCACTGCATTTAGGCAAAGATGGTGTCAAGTGCCAGACTTGCCATaGTGTGTCCGCATGTGGTTC +
Preference number: 5 (lower is better)
Translates to: SRERASCTLTAFRQRWCQVPDLP*CVRMWF
Trigger: GAACCACATGCGGACACACAATGGCAAGTCTGGCAC...TTGACACCATCTTTGCCTAAATGCAGTGAGTGTACAGGAAGCTCGTTCTCGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CAA 90 bp GTGCGCTCTCAGAAGATGAACCAATGTATGATTCCGTGGAAGTGTGTACTTGCAGTGCCAGACTTGCCATaGTGTGTCCGCATGTGGTTC +
Preference number: 5 (lower is better)
Translates to: VRSQKMNQCMIPWKCVLAVPDLP*CVRMWF
Trigger: GAACCACATGCGGACACACAATGGCAAGTCTGGCAC...TGCAAGTACACACTTCCACGGAATCATACATTGGTTCATCTTCTGAGAGCGCAC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CAA 90 bp TCTCGAGAACGAGCTTCCTGTACACTCACTGCATTTAGGCAAAGATGGTGTCAATTCCTCAGCACAGACTaGCTGCTGCCGTTCTTGTGC +
Preference number: 5 (lower is better)
Translates to: SRERASCTLTAFRQRWCQFLSTD*LLPFLC
Trigger: GCACAAGAACGGCAGCAGCAAGTCTGTGCTGAGGAA...TTGACACCATCTTTGCCTAAATGCAGTGAGTGTACAGGAAGCTCGTTCTCGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CAA 90 bp TGTACATATGGCTCAGCTTGTGGACGGGAACAGGGCCTAGTGTACATGTTCCTGCTGCTTTTACTTGTTTaGGACTTTCCAGACCCTTCC +
Preference number: 5 (lower is better)
Translates to: CTYGSACGREQGLVYMFLLLLLV*DFPDPS
Trigger: GGAAGGGTCTGGAAAGTCCAAAACAAGTAAAAGCAG...CAGGAACATGTACACTAGGCCCTGTTCCCGTCCACAAGCTGAGCCATATGTACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CAA 90 bp TCTCGAGAACGAGCTTCCTGTACACTCACTGCATTTAGGCAAAGATGGTGTCAAATCTCCTTAAGCTGCTaGGCAGGTGGGCTTCCCTTA +
Preference number: 5 (lower is better)
Translates to: SRERASCTLTAFRQRWCQISLSC*AGGLPL
Trigger: TAAGGGAAGCCCACCTGCCAAGCAGCTTAAGGAGAT...TTGACACCATCTTTGCCTAAATGCAGTGAGTGTACAGGAAGCTCGTTCTCGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 90 bp TTAACATCTTTGGCACCATCAAGAAATCTCTTTAAATTTTTGGTCTaGGCACTGTCAGCAGCCGTTAGTAGCGCATCCTGCGGCTCCTGG +
Preference number: 5 (lower is better)
Translates to: LTSLAPSRNLFKFLV*ALSAAVSSASCGSW
Trigger: CCAGGAGCCGCAGGATGCGCTACTAACGGCTGCTGACAGTGCGCAGACCAAAAATTTAAAGAGATTTCTTGATGGTGCCAAAGATGTTAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CAA 90 bp GGTCTCCATTCAACACAAGAGGTAAGACATTTCCCAAGGACCCCTCATGGTACAGTGACTTCAGGTTACTaGGGGCTAAAGTGCTGTTGT +
Preference number: 5 (lower is better)
Translates to: GLHSTQEVRHFPRTPHGTVTSGY*GLKCCC
Trigger: ACAACAGCACTTTAGCCCCAAGTAACCTGAAGTCAC...TGTACCATGAGGGGTCCTTGGGAAATGTCTTACCTCTTGTGTTGAATGGAGACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CAA 90 bp TGTACATATGGCTCAGCTTGTGGACGGGAACAGGGCCTAGTGTACATGTTCCTGTACTCAACAGAACCGTaGCTATTATTACTGCTGAGG +
Preference number: 5 (lower is better)
Translates to: CTYGSACGREQGLVYMFLYSTEP*LLLLLR
Trigger: CCTCAGCAGTAATAATAGCAACGGTTCTGTTGAGTA...CAGGAACATGTACACTAGGCCCTGTTCCCGTCCACAAGCTGAGCCATATGTACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CAA 90 bp GTGCGCTCTCAGAAGATGAACCAATGTATGATTCCGTGGAAGTGTGTACTTGCACTGGACTTGAGTCTTTaGGGATGTGGCTCACTGTAC +
Preference number: 5 (lower is better)
Translates to: VRSQKMNQCMIPWKCVLALDLSL*GCGSLY
Trigger: GTACAGTGAGCCACATCCCAAAAGACTCAAGTCCAG...TGCAAGTACACACTTCCACGGAATCATACATTGGTTCATCTTCTGAGAGCGCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CAA 90 bp GTGTCAACATTTCGTTCCATCAGCAATGTGAAGACAAACAATAGACTCAGTGAGAAGCCCCTTCTGCCATaGGTCCCTGCATGCTCTGTG +
Preference number: 5 (lower is better)
Translates to: VSTFRSISNVKTNNRLSEKPLLP*VPACSV
Trigger: CACAGAGCATGCAGGGACCAATGGCAGAAGGGGCTT...CTCACTGAGTCTATTGTTTGTCTTCACATTGCTGATGGAACGAAATGTTGACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS TCA 90 bp AGCTGCATGTTTATGGAAATCCTGAGTATCGTTGCTGTGTGCTGGTaGGAGAACACTCTGGAAGACAGAAGGCATCTCCTTAAGCTGCTT +
Preference number: 5 (lower is better)
Translates to: SCMFMEILSIVAVCW*ENTLEDRRHLLKLL
Trigger: AAGCAGCTTAAGGAGATGCCTTCTGTCTTCCAGAGTGTTCTCTCACCAGCACACAGCAACGATACTCAGGATTTCCATAAACATGCAGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS TCA 90 bp TTCCTCGCTTTCTCAGCACTATCAGCTGCATGTTTATGGAAATCCTaGGTATCGTTGCTGTGTGCTGGTGAGAGAACACTCTGGAAGACA +
Preference number: 5 (lower is better)
Translates to: FLAFSALSAACLWKS*VSLLCAGERTLWKT
Trigger: TGTCTTCCAGAGTGTTCTCTCACCAGCACACAGCAACGATACTCAGGATTTCCATAAACATGCAGCTGATAGTGCTGAGAAAGCGAGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 90 bp TCTCAGCACTATCAGCTGCATGTTTATGGAAATCCTGAGTATCGTTaGTGTGTGCTGGTGAGAGAACACTCTGGAAGACAGAAGGCATCT +
Preference number: 5 (lower is better)
Translates to: SQHYQLHVYGNPEYR*CVLVREHSGRQKAS
Trigger: AGATGCCTTCTGTCTTCCAGAGTGTTCTCTCACCAGCACACAGCAACGATACTCAGGATTTCCATAAACATGCAGCTGATAGTGCTGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CAA 90 bp CTAAGAAAACAGTCTAGCTTATGTACATATGGCTCAGCTTGTGGACGGGAACAGCCAATGCTGGCTCTGTaGGCTCCAGAGCTTTATCAA +
Preference number: 5 (lower is better)
Translates to: LRKQSSLCTYGSACGREQPMLAL*APELYQ
Trigger: TTGATAAAGCTCTGGAGCCAACAGAGCCAGCATTGG...CTGTTCCCGTCCACAAGCTGAGCCATATGTACATAAGCTAGACTGTTTTCTTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CAA 90 bp CGCCCAACGGCTCCCACTCGTTTTTATTGCTATTTGGTACAAAGGTTAACAGAAGAGCATGAGTCGTCATaGTCTGTGCTTCCTTCTTGG +
Preference number: 5 (lower is better)
Translates to: RPTAPTRFYCYLVQRLTEEHESS*SVLPSW
Trigger: CCAAGAAGGAAGCACAGACAATGACGACTCATGCTC...TTCTGTTAACCTTTGTACCAAATAGCAATAAAAACGAGTGGGAGCCGTTGGGCG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CAA 90 bp AAAAGATCTTCCTACAAGAGCAGACACATCTCAACCCAGGTCTCCATTCAACACCTGGGGATCAGACACTaGCTCAAAGAGATTGCAGGA +
Preference number: 5 (lower is better)
Translates to: KRSSYKSRHISTQVSIQHLGIRH*LKEIAG
Trigger: TCCTGCAATCTCTTTGAGCAAGTGTCTGATCCCCAG...GTGTTGAATGGAGACCTGGGTTGAGATGTGTCTGCTCTTGTAGGAAGATCTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CAA 90 bp AAGACTCCAAATACAAACGATTTCCCTAAGCTTTCCACTCCCTTTAAAAATTGCGTAGTAGTCTCTCCCTaGCTGTGCCCATGGGCCGTC +
Preference number: 5 (lower is better)
Translates to: KTPNTNDFPKLSTPFKNCVVVSP*LCPWAV
Trigger: GACGGCCCATGGGCACAGCAAGGGAGAGACTACTAC...GCAATTTTTAAAGGGAGTGGAAAGCTTAGGGAAATCGTTTGTATTTGGAGTCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CCA 90 bp TTCACTATTAGCATGTCTAGGCTTCTCTTTGTCTTGGGAGAGACCTaGACAACTGCTTTTACTTGTTTTGGACTTTCCAGACCCTTCCGC +
Preference number: 5 (lower is better)
Translates to: FTISMSRLLFVLGET*TTAFTCFGLSRPFR
Trigger: GCGGAAGGGTCTGGAAAGTCCAAAACAAGTAAAAGCAGTTGTCCAGGTCTCTCCCAAGACAAAGAGAAGCCTAGACATGCTAATAGTGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CAA 90 bp GGTCTCCATTCAACACAAGAGGTAAGACATTTCCCAAGGACCCCTCATGGTACAGACAACTGCTTTTACTaGTTTTGGACTTTCCAGACC +
Preference number: 5 (lower is better)
Translates to: GLHSTQEVRHFPRTPHGTDNCFY*FWTFQT
Trigger: GGTCTGGAAAGTCCAAAACAAGTAAAAGCAGTTGTC...TGTACCATGAGGGGTCCTTGGGAAATGTCTTACCTCTTGTGTTGAATGGAGACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CCA 90 bp CCAGAAGGCACTTCACTATTAGCATGTCTAGGCTTCTCTTTGTCTTaGGAGAGACCTGGACAACTGCTTTTACTTGTTTTGGACTTTCCA +
Preference number: 5 (lower is better)
Translates to: PEGTSLLACLGFSLS*ERPGQLLLLVLDFP
Trigger: TGGAAAGTCCAAAACAAGTAAAAGCAGTTGTCCAGGTCTCTCCCAAGACAAAGAGAAGCCTAGACATGCTAATAGTGAAGTGCCTTCTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CAA 90 bp GTGTCAACATTTCGTTCCATCAGCAATGTGAAGACAAACAATAGACTCAGTGAGCTGGACTTGAGTCTTTaGGGATGTGGCTCACTGTAC +
Preference number: 5 (lower is better)
Translates to: VSTFRSISNVKTNNRLSELDLSL*GCGSLY
Trigger: GTACAGTGAGCCACATCCCAAAAGACTCAAGTCCAG...CTCACTGAGTCTATTGTTTGTCTTCACATTGCTGATGGAACGAAATGTTGACAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CAA 90 bp AAAAGATCTTCCTACAAGAGCAGACACATCTCAACCCAGGTCTCCATTCAACACGACAACTGCTTTTACTaGTTTTGGACTTTCCAGACC +
Preference number: 5 (lower is better)
Translates to: KRSSYKSRHISTQVSIQHDNCFY*FWTFQT
Trigger: GGTCTGGAAAGTCCAAAACAAGTAAAAGCAGTTGTC...GTGTTGAATGGAGACCTGGGTTGAGATGTGTCTGCTCTTGTAGGAAGATCTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CAA 90 bp CTCCAAATACAAACGATTTCCCTAAGCTTTCCACTCCCTTTAAAAATTGCTTCCAGGCTTCTCTTTGTCTaGGGAGAGACCTGGACAACT +
Preference number: 5 (lower is better)
Translates to: LQIQTISLSFPLPLKIASRLLFV*GETWTT
Trigger: AGTTGTCCAGGTCTCTCCCAAGACAAAGAGAAGCCT...GGAAGCAATTTTTAAAGGGAGTGGAAAGCTTAGGGAAATCGTTTGTATTTGGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CAA 90 bp CGCCCAACGGCTCCCACTCGTTTTTATTGCTATTTGGTACAAAGGTTAACAGAATACTCAACAGAACCGTaGCTATTATTACTGCTGAGG +
Preference number: 5 (lower is better)
Translates to: RPTAPTRFYCYLVQRLTEYSTEP*LLLLLR
Trigger: CCTCAGCAGTAATAATAGCAACGGTTCTGTTGAGTA...TTCTGTTAACCTTTGTACCAAATAGCAATAAAAACGAGTGGGAGCCGTTGGGCG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CAA 90 bp AAGACTCCAAATACAAACGATTTCCCTAAGCTTTCCACTCCCTTTAAAAATTGCCCAATGCTGGCTCTGTaGGCTCCAGAGCTTTATCAA +
Preference number: 5 (lower is better)
Translates to: KTPNTNDFPKLSTPFKNCPMLAL*APELYQ
Trigger: TTGATAAAGCTCTGGAGCCAACAGAGCCAGCATTGG...GCAATTTTTAAAGGGAGTGGAAAGCTTAGGGAAATCGTTTGTATTTGGAGTCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS-3UTR CAA 90 bp CGCCCAACGGCTCCCACTCGTTTTTATTGCTATTTGGTACAAAGGTTAACAGAAAATCTCTTTAAATTTTaGGTCTGCGCACTGTCAGCA +
Preference number: 5 (lower is better)
Translates to: RPTAPTRFYCYLVQRLTENLFKF*VCALSA
Trigger: TGCTGACAGTGCGCAGACCAAAAATTTAAAGAGATT...TTCTGTTAACCTTTGTACCAAATAGCAATAAAAACGAGTGGGAGCCGTTGGGCG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS TCA 72 bp GGCATGTGGCCCTCTGCCACGGCCATGCTCTTCTCCTaGGCAGCTCGGAAGGGGACTGCCACCGGCCCTTTT +
Preference number: 6 (lower is better)
Translates to: GMWPSATAMLFS*AARKGTATGPF
Trigger: AAAAGGGCCGGTGGCAGTCCCCTTCCGAGCTGCTCAGGAGAAGAGCATGGCCGTGGCAGAGGGCCACATGCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 72 bp TGCAATCCAGGGGCATGTGGCCCTCTGCCACGGCCATaGTCTTCTCCTGAGCAGCTCGGAAGGGGACTGCCA +
Preference number: 6 (lower is better)
Translates to: CNPGACGPLPRP*SSPEQLGRGLP
Trigger: TGGCAGTCCCCTTCCGAGCTGCTCAGGAGAAGAGCATGGCCGTGGCAGAGGGCCACATGCCCCTGGATTGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 72 bp AGAGTGGTGCTGAGGTCTGGGGAGCAGGTCCCAGGCTaGCTTGCATCCACAGCCATGGTGGGTGACAGGGCA +
Preference number: 6 (lower is better)
Translates to: RVVLRSGEQVPG*LASTAMVGDRA
Trigger: TGCCCTGTCACCCACCATGGCTGTGGATGCAAGGCAGCCTGGGACCTGCTCCCCAGACCTCAGCACCACTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 72 bp CTTGGCCCCGAGGCCCCCTGCCGAGCCTTCTCTGAGTaGAGGGACTTCGAGTGTGGTGAGAAGGCAGTCTTG +
Preference number: 6 (lower is better)
Translates to: LGPEAPCRAFSE*RDFECGEKAVL
Trigger: CAAGACTGCCTTCTCACCACACTCGAAGTCCCTGCACTCAGAGAAGGCTCGGCAGGGGGCCTCGGGGCCAAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 72 bp CACAGGCCTCTTTCCTTCAAGGGCTGGGCTGCCTCCTaGGTGTCCCACGGGTCCACAGGTATACAGGGGTCC +
Preference number: 6 (lower is better)
Translates to: HRPLSFKGWAAS*VSHGSTGIQGS
Trigger: GGACCCCTGTATACCTGTGGACCCGTGGGACACGCAGGAGGCAGCCCAGCCCTTGAAGGAAAGAGGCCTGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS TCA 72 bp GGTCCCAGGCTGCCTTGCATCCACAGCCATGGTGGGTaGCAGGGCATCAGTCCTCCTGTCCTTCCTGTGCAC +
Preference number: 6 (lower is better)
Translates to: GPRLPCIHSHGG*QGISPPVLPVH
Trigger: GTGCACAGGAAGGACAGGAGGACTGATGCCCTGTCACCCACCATGGCTGTGGATGCAAGGCAGCCTGGGACC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CCA 72 bp CAGAGGCACTGTAGGGCTTCTGCACAGCCAACACACTaGGTGACTCCACCTCCCCAGGGCTCAGGAAACGGG +
Preference number: 6 (lower is better)
Translates to: QRHCRASAQPTH*VTPPPQGSGNG
Trigger: CCCGTTTCCTGAGCCCTGGGGAGGTGGAGTCACCCAGTGTGTTGGCTGTGCAGAAGCCCTACAGTGCCTCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 72 bp GTGGGTGACAGGGCATCAGTCCTCCTGTCCTTCCTGTaGACCCTCGAGTGCAGGACGAGCTGGTGGTATGTC +
Preference number: 6 (lower is better)
Translates to: VGDRASVLLSFL*TLECRTSWWYV
Trigger: GACATACCACCAGCTCGTCCTGCACTCGAGGGTGCACAGGAAGGACAGGAGGACTGATGCCCTGTCACCCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CCA 72 bp AGCAGGTCCCAGGCTGCCTTGCATCCACAGCCATGGTaGGTGACAGGGCATCAGTCCTCCTGTCCTTCCTGT +
Preference number: 6 (lower is better)
Translates to: SRSQAALHPQPW*VTGHQSSCPSC
Trigger: ACAGGAAGGACAGGAGGACTGATGCCCTGTCACCCACCATGGCTGTGGATGCAAGGCAGCCTGGGACCTGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CCA 72 bp CGCCACCTTTGGGAAACAACTCTGACTGCTGCTGCCTaGTGGCACTGGTGCCCCCAGCATTGGGTTGTGACC +
Preference number: 6 (lower is better)
Translates to: RHLWETTLTAAA*WHWCPQHWVVT
Trigger: GGTCACAACCCAATGCTGGGGGCACCAGTGCCACCAGGCAGCAGCAGTCAGAGTTGTTTCCCAAAGGTGGCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS TCA 72 bp GCACCCTCGAGTGCAGGACGAGCTGGTGGTATGTCCTaGAGGCTTTGCTGCACTCAGAACAGTGCGTGGGCT +
Preference number: 6 (lower is better)
Translates to: APSSAGRAGGMS*RLCCTQNSAWA
Trigger: AGCCCACGCACTGTTCTGAGTGCAGCAAAGCCTTCAGGACATACCACCAGCTCGTCCTGCACTCGAGGGTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS TCA 72 bp CCAACCCCCTCTAGTCTGCAGACAGGGCTGCTGGCCTaGGGCTCCCCTGCTTTCTTTCTCTGCATGTCCAGA +
Preference number: 6 (lower is better)
Translates to: PTPSSLQTGLLA*GSPAFFLCMSR
Trigger: TCTGGACATGCAGAGAAAGAAAGCAGGGGAGCCTCAGGCCAGCAGCCCTGTCTGCAGACTAGAGGGGGTTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 72 bp CTAAGGACCCAACCCCCTCTAGTCTGCAGACAGGGCTaGTGGCCTGAGGCTCCCCTGCTTTCTTTCTCTGCA +
Preference number: 6 (lower is better)
Translates to: LRTQPPLVCRQG*WPEAPLLSFSA
Trigger: TGCAGAGAAAGAAAGCAGGGGAGCCTCAGGCCAGCAGCCCTGTCTGCAGACTAGAGGGGGTTGGGTCCTTAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 72 bp GATGTGACACAGGCCTCTTTCCTTCAAGGGCTGGGCTaGCTCCTGCGTGTCCCACGGGTCCACAGGTATACA +
Preference number: 6 (lower is better)
Translates to: DVTQASFLQGLG*LLRVPRVHRYT
Trigger: TGTATACCTGTGGACCCGTGGGACACGCAGGAGGCAGCCCAGCCCTTGAAGGAAAGAGGCCTGTGTCACATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CCA 72 bp AGTGCAGGGACTTCGAGTGTGGTGAGAAGGCAGTCTTaGCCTTGGGCTTGTGCAGGCCAGACAAGGGAGGGA +
Preference number: 6 (lower is better)
Translates to: SAGTSSVVRRQS*PWACAGQTREG
Trigger: TCCCTCCCTTGTCTGGCCTGCACAAGCCCAAGGCCAAGACTGCCTTCTCACCACACTCGAAGTCCCTGCACT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CAA 90 bp CACCCGGTACGCCTGTTCCTCAGCACAGACTTGCTGCTGCCGTTCTaGTGCGGGTCAGGGTTGTACCTGTGCTCAAGTCTCTGGTGCATC +
Preference number: 6 (lower is better)
Translates to: HPVRLFLSTDLLLPF*CGSGLYLCSSLWCI
Trigger: GATGCACCAGAGACTTGAGCACAGGTACAACCCTGACCCGCACAAGAACGGCAGCAGCAAGTCTGTGCTGAGGAACAGGCGTACCGGGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CAA 90 bp GGCTCAGGTCTCTTCACCTTATCCATAGCAGCAGGGACGCCACCTTaGGGAAACAACTCTGACTGCTGCTGCCTGGTGGCACTGGTGCCC +
Preference number: 6 (lower is better)
Translates to: GSGLFTLSIAAGTPP*GNNSDCCCLVALVP
Trigger: GGGCACCAGTGCCACCAGGCAGCAGCAGTCAGAGTTGTTTCCCAAAGGTGGCGTCCCTGCTGCTATGGATAAGGTGAAGAGACCTGAGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CAA 90 bp TGCAGGGACTTCGAGTGTGGTGAGAAGGCAGTCTTGGCCTTGGGCTaGTGCAGGCCAGACAAGGGAGGGACATCTTTTCCCAGCAAAGCC +
Preference number: 6 (lower is better)
Translates to: CRDFECGEKAVLALG*CRPDKGGTSFPSKA
Trigger: GGCTTTGCTGGGAAAAGATGTCCCTCCCTTGTCTGGCCTGCACAAGCCCAAGGCCAAGACTGCCTTCTCACCACACTCGAAGTCCCTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CAA 90 bp TCTGAGTGCAGGGACTTCGAGTGTGGTGAGAAGGCAGTCTTGGCCTaGGGCTTGTGCAGGCCAGACAAGGGAGGGACATCTTTTCCCAGC +
Preference number: 6 (lower is better)
Translates to: SECRDFECGEKAVLA*GLCRPDKGGTSFPS
Trigger: GCTGGGAAAAGATGTCCCTCCCTTGTCTGGCCTGCACAAGCCCAAGGCCAAGACTGCCTTCTCACCACACTCGAAGTCCCTGCACTCAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CAA 90 bp CCATTGGTCCCTGCATGCTCTGTGTCCAGGGACACCGCACTGGACTaGAGTCTTTTGGGATGTGGCTCACTGTACTCTGCTGCGGCACTG +
Preference number: 6 (lower is better)
Translates to: PLVPACSVSRDTALD*SLLGCGSLYSAAAL
Trigger: CAGTGCCGCAGCAGAGTACAGTGAGCCACATCCCAAAAGACTCAAGTCCAGTGCGGTGTCCCTGGACACAGAGCATGCAGGGACCAATGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 72 bp GGCTCTGCTTATTTGGGAAGAGGAAGCCGCAGACCATaGAGATCTTGTAGGGCGTGGAGATGCTCCCAGGGG +
Preference number: 6 (lower is better)
Translates to: GSAYLGRGSRRP*RSCRAWRCSQG
Trigger: CCCCTGGGAGCATCTCCACGCCCTACAAGATCTGCATGGTCTGCGGCTTCCTCTTCCCAAATAAGCAGAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 72 bp GCATCAGTCCTCCTGTCCTTCCTGTGCACCCTCGAGTaGAGGACGAGCTGGTGGTATGTCCTGAAGGCTTTG +
Preference number: 6 (lower is better)
Translates to: ASVLLSFLCTLE*RTSWWYVLKAL
Trigger: CAAAGCCTTCAGGACATACCACCAGCTCGTCCTGCACTCGAGGGTGCACAGGAAGGACAGGAGGACTGATGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 72 bp GAGTGTGGTGAGAAGGCAGTCTTGGCCTTGGGCTTGTaGAGGCCAGACAAGGGAGGGACATCTTTTCCCAGC +
Preference number: 6 (lower is better)
Translates to: ECGEKAVLALGL*RPDKGGTSFPS
Trigger: GCTGGGAAAAGATGTCCCTCCCTTGTCTGGCCTGCACAAGCCCAAGGCCAAGACTGCCTTCTCACCACACTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CCA 72 bp GGGACTTCGAGTGTGGTGAGAAGGCAGTCTTGGCCTTaGGCTTGTGCAGGCCAGACAAGGGAGGGACATCTT +
Preference number: 6 (lower is better)
Translates to: GTSSVVRRQSWP*ACAGQTREGHL
Trigger: AAGATGTCCCTCCCTTGTCTGGCCTGCACAAGCCCAAGGCCAAGACTGCCTTCTCACCACACTCGAAGTCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CCA 72 bp TGGGAAACAACTCTGACTGCTGCTGCCTGGTGGCACTaGTGCCCCCAGCATTGGGTTGTGACCTGTGTGACT +
Preference number: 6 (lower is better)
Translates to: WETTLTAAAWWH*CPQHWVVTCVT
Trigger: AGTCACACAGGTCACAACCCAATGCTGGGGGCACCAGTGCCACCAGGCAGCAGCAGTCAGAGTTGTTTCCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CCA 72 bp CACCTTTGGGAAACAACTCTGACTGCTGCTGCCTGGTaGCACTGGTGCCCCCAGCATTGGGTTGTGACCTGT +
Preference number: 6 (lower is better)
Translates to: HLWETTLTAAAW*HWCPQHWVVTC
Trigger: ACAGGTCACAACCCAATGCTGGGGGCACCAGTGCCACCAGGCAGCAGCAGTCAGAGTTGTTTCCCAAAGGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CAA 90 bp CCTGCATGCTCTGTGTCCAGGGACACCGCACTGGACTTGAGTCTTTaGGGATGTGGCTCACTGTACTCTGCTGCGGCACTGCCAGAATTC +
Preference number: 6 (lower is better)
Translates to: PACSVSRDTALDLSL*GCGSLYSAAALPEF
Trigger: GAATTCTGGCAGTGCCGCAGCAGAGTACAGTGAGCCACATCCCAAAAGACTCAAGTCCAGTGCGGTGTCCCTGGACACAGAGCATGCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CAA 90 bp CACTCTGGTGGTAGCAAGGAGGTGATGCTCCTGACCACATGGTACTaGGGGAGCTCAAAGCCCCTTCTGCCATTGGTCCCTGCATGCTCT +
Preference number: 6 (lower is better)
Translates to: HSGGSKEVMLLTTWY*GSSKPLLPLVPACS
Trigger: AGAGCATGCAGGGACCAATGGCAGAAGGGGCTTTGAGCTCCCCAAGTACCATGTGGTCAGGAGCATCACCTCCTTGCTACCACCAGAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 72 bp GCTCAACTCCTCGGGGTCTTCGCCACTCTTCTCCAATaGTGGCTCTGTTGGCTCCAGAGCTTTATCAAGGGG +
Preference number: 6 (lower is better)
Translates to: AQLLGVFATLLQ*WLCWLQSFIKG
Trigger: CCCCTTGATAAAGCTCTGGAGCCAACAGAGCCAGCATTGGAGAAGAGTGGCGAAGACCCCGAGGAGTTGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CCA 72 bp TCCTTCCTGTGCACCCTCGAGTGCAGGACGAGCTGGTaGTATGTCCTGAAGGCTTTGCTGCACTCAGAACAG +
Preference number: 6 (lower is better)
Translates to: SFLCTLECRTSW*YVLKALLHSEQ
Trigger: CTGTTCTGAGTGCAGCAAAGCCTTCAGGACATACCACCAGCTCGTCCTGCACTCGAGGGTGCACAGGAAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CCA 72 bp CTGTCCTTCCTGTGCACCCTCGAGTGCAGGACGAGCTaGTGGTATGTCCTGAAGGCTTTGCTGCACTCAGAA +
Preference number: 6 (lower is better)
Translates to: LSFLCTLECRTS*WYVLKALLHSE
Trigger: TTCTGAGTGCAGCAAAGCCTTCAGGACATACCACCAGCTCGTCCTGCACTCGAGGGTGCACAGGAAGGACAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CAA 72 bp TTCGAGTGTGGTGAGAAGGCAGTCTTGGCCTTGGGCTaGTGCAGGCCAGACAAGGGAGGGACATCTTTTCCC +
Preference number: 6 (lower is better)
Translates to: FECGEKAVLALG*CRPDKGGTSFP
Trigger: GGGAAAAGATGTCCCTCCCTTGTCTGGCCTGCACAAGCCCAAGGCCAAGACTGCCTTCTCACCACACTCGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CAA 72 bp TCTGTGTCCAGGGACACCGCACTGGACTTGAGTCTTTaGGGATGTGGCTCACTGTACTCTGCTGCGGCACTG +
Preference number: 6 (lower is better)
Translates to: SVSRDTALDLSL*GCGSLYSAAAL
Trigger: CAGTGCCGCAGCAGAGTACAGTGAGCCACATCCCAAAAGACTCAAGTCCAGTGCGGTGTCCCTGGACACAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 72 bp CCATGCCTTGCTGAAGCTTGCTCCTGGTGCCAGACTTaGCATTGTGTGTCCGCATGTGGTTCTTCAGGAACC +
Preference number: 6 (lower is better)
Translates to: PCLAEACSWCQT*HCVSACGSSGT
Trigger: GGTTCCTGAAGAACCACATGCGGACACACAATGGCAAGTCTGGCACCAGGAGCAAGCTTCAGCAAGGCATGG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 72 bp GGCAACGGCCACTTTTCCTTTGGTAGCCAACTGCCATaGCTGGTAGGTGGTGAACGGGTCAAGCTGAGGTAT +
Preference number: 6 (lower is better)
Translates to: GNGHFSFGSQLP*LVGGERVKLRY
Trigger: ATACCTCAGCTTGACCCGTTCACCACCTACCAGGCATGGCAGTTGGCTACCAAAGGAAAAGTGGCCGTTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 72 bp CTGCTGCCGTTCTTGTGCGGGTCAGGGTTGTACCTGTaGTCAAGTCTCTGGTGCATCATAAGGACTTCCGGA +
Preference number: 6 (lower is better)
Translates to: LLPFLCGSGLYL*SSLWCIIRTSG
Trigger: TCCGGAAGTCCTTATGATGCACCAGAGACTTGAGCACAGGTACAACCCTGACCCGCACAAGAACGGCAGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CCA 72 bp CAACTCCTCGGGGTCTTCGCCACTCTTCTCCAATGCTaGCTCTGTTGGCTCCAGAGCTTTATCAAGGGGACT +
Preference number: 6 (lower is better)
Translates to: QLLGVFATLLQC*LCWLQSFIKGT
Trigger: AGTCCCCTTGATAAAGCTCTGGAGCCAACAGAGCCAGCATTGGAGAAGAGTGGCGAAGACCCCGAGGAGTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CCA 72 bp CAGGGACACCGCACTGGACTTGAGTCTTTTGGGATGTaGCTCACTGTACTCTGCTGCGGCACTGCCAGAATT +
Preference number: 6 (lower is better)
Translates to: QGHRTGLESFGM*LTVLCCGTARI
Trigger: AATTCTGGCAGTGCCGCAGCAGAGTACAGTGAGCCACATCCCAAAAGACTCAAGTCCAGTGCGGTGTCCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CAA 72 bp CCTGCATGCTCTGTGTCCAGGGACACCGCACTGGACTaGAGTCTTTTGGGATGTGGCTCACTGTACTCTGCT +
Preference number: 6 (lower is better)
Translates to: PACSVSRDTALD*SLLGCGSLYSA
Trigger: AGCAGAGTACAGTGAGCCACATCCCAAAAGACTCAAGTCCAGTGCGGTGTCCCTGGACACAGAGCATGCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CAA 90 bp GTCCTGAAGGCTTTGCTGCACTCAGAACAGTGCGTGGGCTTCTCCTaGCTACTGGACAACTTGGGGTCACTATCCCCAGAAGGCACTTCA +
Preference number: 6 (lower is better)
Translates to: VLKALLHSEQCVGFS*LLDNLGSLSPEGTS
Trigger: TGAAGTGCCTTCTGGGGATAGTGACCCCAAGTTGTCCAGTAGCAAGGAGAAGCCCACGCACTGTTCTGAGTGCAGCAAAGCCTTCAGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CAA 90 bp TTCCTCAGCACAGACTTGCTGCTGCCGTTCTTGTGCGGGTCAGGGTaGTACCTGTGCTCAAGTCTCTGGTGCATCATAAGGACTTCCGGA +
Preference number: 6 (lower is better)
Translates to: FLSTDLLLPFLCGSG*YLCSSLWCIIRTSG
Trigger: TCCGGAAGTCCTTATGATGCACCAGAGACTTGAGCACAGGTACAACCCTGACCCGCACAAGAACGGCAGCAGCAAGTCTGTGCTGAGGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS TCA 72 bp GACTCAGCGGCAGCATCCACCGGCTGCTTGTCTTTGTaGTGTCTCTCCAAGTGGTACCTCAGAGATGTCTTC +
Preference number: 6 (lower is better)
Translates to: DSAAASTGCLSL*CLSKWYLRDVF
Trigger: GAAGACATCTCTGAGGTACCACTTGGAGAGACATCACAAAGACAAGCAGCCGGTGGATGCTGCCGCTGAGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 72 bp CTTTGCTGCACTCAGAACAGTGCGTGGGCTTCTCCTTaGTACTGGACAACTTGGGGTCACTATCCCCAGAAG +
Preference number: 6 (lower is better)
Translates to: LCCTQNSAWASP*YWTTWGHYPQK
Trigger: CTTCTGGGGATAGTGACCCCAAGTTGTCCAGTAGCAAGGAGAAGCCCACGCACTGTTCTGAGTGCAGCAAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CCA 72 bp TGCACTCAGAACAGTGCGTGGGCTTCTCCTTGCTACTaGACAACTTGGGGTCACTATCCCCAGAAGGCACTT +
Preference number: 6 (lower is better)
Translates to: CTQNSAWASPCY*TTWGHYPQKAL
Trigger: AAGTGCCTTCTGGGGATAGTGACCCCAAGTTGTCCAGTAGCAAGGAGAAGCCCACGCACTGTTCTGAGTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CAA 72 bp GCTTTGCTGCACTCAGAACAGTGCGTGGGCTTCTCCTaGCTACTGGACAACTTGGGGTCACTATCCCCAGAA +
Preference number: 6 (lower is better)
Translates to: ALLHSEQCVGFS*LLDNLGSLSPE
Trigger: TTCTGGGGATAGTGACCCCAAGTTGTCCAGTAGCAAGGAGAAGCCCACGCACTGTTCTGAGTGCAGCAAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CAA 72 bp ACAGACTTGCTGCTGCCGTTCTTGTGCGGGTCAGGGTaGTACCTGTGCTCAAGTCTCTGGTGCATCATAAGG +
Preference number: 6 (lower is better)
Translates to: TDLLLPFLCGSG*YLCSSLWCIIR
Trigger: CCTTATGATGCACCAGAGACTTGAGCACAGGTACAACCCTGACCCGCACAAGAACGGCAGCAGCAAGTCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 72 bp GTGACCTGTGTGACTTCAGGTTACTTGGGGCTAAAGTaGTGTTGTCTGGTCCTGAAGTCTGGGGTGCTTTGC +
Preference number: 6 (lower is better)
Translates to: VTCVTSGYLGLK*CCLVLKSGVLC
Trigger: GCAAAGCACCCCAGACTTCAGGACCAGACAACAGCACTTTAGCCCCAAGTAACCTGAAGTCACACAGGTCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 72 bp TTTTGGGATGTGGCTCACTGTACTCTGCTGCGGCACTaGCAGAATTCCGATGGCAGTAGTAGTCTCTCCCTT +
Preference number: 6 (lower is better)
Translates to: FWDVAHCTLLRH*QNSDGSSSLSL
Trigger: AAGGGAGAGACTACTACTGCCATCGGAATTCTGGCAGTGCCGCAGCAGAGTACAGTGAGCCACATCCCAAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 72 bp CTTGAGTCTTTTGGGATGTGGCTCACTGTACTCTGCTaGGGCACTGCCAGAATTCCGATGGCAGTAGTAGTC +
Preference number: 6 (lower is better)
Translates to: LESFGMWLTVLC*GTARIPMAVVV
Trigger: GACTACTACTGCCATCGGAATTCTGGCAGTGCCGCAGCAGAGTACAGTGAGCCACATCCCAAAAGACTCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 72 bp GGACTTGAGTCTTTTGGGATGTGGCTCACTGTACTCTaGTGCGGCACTGCCAGAATTCCGATGGCAGTAGTA +
Preference number: 6 (lower is better)
Translates to: GLESFGMWLTVL*CGTARIPMAVV
Trigger: TACTACTGCCATCGGAATTCTGGCAGTGCCGCAGCAGAGTACAGTGAGCCACATCCCAAAAGACTCAAGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CAA 72 bp CTGTGTGACTTCAGGTTACTTGGGGCTAAAGTGCTGTaGTCTGGTCCTGAAGTCTGGGGTGCTTTGCTTGGC +
Preference number: 6 (lower is better)
Translates to: LCDFRLLGAKVL*SGPEVWGALLG
Trigger: GCCAAGCAAAGCACCCCAGACTTCAGGACCAGACAACAGCACTTTAGCCCCAAGTAACCTGAAGTCACACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CAA 90 bp CTGCACTCAGAACAGTGCGTGGGCTTCTCCTTGCTACTGGACAACTaGGGGTCACTATCCCCAGAAGGCACTTCACTATTAGCATGTCTA +
Preference number: 6 (lower is better)
Translates to: LHSEQCVGFSLLLDN*GSLSPEGTSLLACL
Trigger: TAGACATGCTAATAGTGAAGTGCCTTCTGGGGATAGTGACCCCAAGTTGTCCAGTAGCAAGGAGAAGCCCACGCACTGTTCTGAGTGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS TCA 72 bp ACTTCATTGATGGTGACTGGACTCTCCATGCCTTGCTaGAGCTTGCTCCTGGTGCCAGACTTGCCATTGTGT +
Preference number: 6 (lower is better)
Translates to: TSLMVTGLSMPC*SLLLVPDLPLC
Trigger: ACACAATGGCAAGTCTGGCACCAGGAGCAAGCTTCAGCAAGGCATGGAGAGTCCAGTCACCATCAATGAAGT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS TCA 72 bp GCAACGTTGCTGGCACTGGGGACAGTTTCTTTGGCGTaGACCTTGCTGTGCTCAATGAGGCTCTGCTTATTT +
Preference number: 6 (lower is better)
Translates to: ATLLALGTVSLA*TLLCSMRLCLF
Trigger: AAATAAGCAGAGCCTCATTGAGCACAGCAAGGTTCACGCCAAAGAAACTGTCCCCAGTGCCAGCAACGTTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CAA 72 bp GAACAGTGCGTGGGCTTCTCCTTGCTACTGGACAACTaGGGGTCACTATCCCCAGAAGGCACTTCACTATTA +
Preference number: 6 (lower is better)
Translates to: EQCVGFSLLLDN*GSLSPEGTSLL
Trigger: TAATAGTGAAGTGCCTTCTGGGGATAGTGACCCCAAGTTGTCCAGTAGCAAGGAGAAGCCCACGCACTGTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CAA 90 bp CAAGCTGAGGTATGCAGGTCATGGGCTTCACTGTACTACCTGCAGTaGATCTGGGTCTCAAGTTCAAAAACTGCAGCAACTCTTCCCTCG +
Preference number: 6 (lower is better)
Translates to: QAEVCRSWASLYYLQ*IWVSSSKTAATLPS
Trigger: CGAGGGAAGAGTTGCTGCAGTTTTTGAACTTGAGACCCAGATCAACTGCAGGTAGTACAGTGAAGCCCATGACCTGCATACCTCAGCTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 72 bp CCGCACATGCTGCACCCATACGTGAAGGAGTCCTTATaGTTCTTCATGTGGCTCTCAACATCAAAAGCCACT +
Preference number: 6 (lower is better)
Translates to: PHMLHPYVKESL*FFMWLSTSKAT
Trigger: AGTGGCTTTTGATGTTGAGAGCCACATGAAGAAGCATAAGGACTCCTTCACGTATGGGTGCAGCATGTGCGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 72 bp AGAACACTCTGGAAGACAGAAGGCATCTCCTTAAGCTaGTTGGCAGGTGGGCTTCCCTTAACATCTTTGGCA +
Preference number: 6 (lower is better)
Translates to: RTLWKTEGISLS*LAGGLPLTSLA
Trigger: TGCCAAAGATGTTAAGGGAAGCCCACCTGCCAAGCAGCTTAAGGAGATGCCTTCTGTCTTCCAGAGTGTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 72 bp GGCAGGGCTCTTCCTCGCTTTCTCAGCACTATCAGCTaGATGTTTATGGAAATCCTGAGTATCGTTGCTGTG +
Preference number: 6 (lower is better)
Translates to: GRALPRFLSTIS*MFMEILSIVAV
Trigger: CACAGCAACGATACTCAGGATTTCCATAAACATGCAGCTGATAGTGCTGAGAAAGCGAGGAAGAGCCCTGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CAA 72 bp TCCCCTAGTTCCTCTTTCTCTGAGCATGAGTCGTCATaGTCTGTGCTTCCTTCTTGGCCTGACTCTTTCACC +
Preference number: 6 (lower is better)
Translates to: SPSSSFSEHESS*SVLPSWPDSFT
Trigger: GGTGAAAGAGTCAGGCCAAGAAGGAAGCACAGACAATGACGACTCATGCTCAGAGAAAGAGGAACTAGGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CAA 72 bp CAGCATTGGGTTGTGACCTGTGTGACTTCAGGTTACTaGGGGCTAAAGTGCTGTTGTCTGGTCCTGAAGTCT +
Preference number: 6 (lower is better)
Translates to: QHWVVTCVTSGY*GLKCCCLVLKS
Trigger: AGACTTCAGGACCAGACAACAGCACTTTAGCCCCAAGTAACCTGAAGTCACACAGGTCACAACCCAATGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CAA 90 bp ACCCATATTTCCCCTAGTTCCTCTTTCTCTGAGCATGAGTCGTCATaGTCTGTGCTTCCTTCTTGGCCTGACTCTTTCACCTCTTCCTGG +
Preference number: 6 (lower is better)
Translates to: THISPSSSFSEHESS*SVLPSWPDSFTSSW
Trigger: CCAGGAAGAGGTGAAAGAGTCAGGCCAAGAAGGAAGCACAGACAATGACGACTCATGCTCAGAGAAAGAGGAACTAGGGGAAATATGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 72 bp GTTCCTCTTTCTCTGAGCATGAGTCGTCATTGTCTGTaGTTCCTTCTTGGCCTGACTCTTTCACCTCTTCCT +
Preference number: 6 (lower is better)
Translates to: VPLSLSMSRHCL*FLLGLTLSPLP
Trigger: AGGAAGAGGTGAAAGAGTCAGGCCAAGAAGGAAGCACAGACAATGACGACTCATGCTCAGAGAAAGAGGAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CCA 72 bp ATGCTTCTTCATGTGGCTCTCAACATCAAAAGCCACTaGGAATGTCTGCCCACACACATCACAGCTCAACTC +
Preference number: 6 (lower is better)
Translates to: MLLHVALNIKSH*ECLPTHITAQL
Trigger: GAGTTGAGCTGTGATGTGTGTGGGCAGACATTCCCAGTGGCTTTTGATGTTGAGAGCCACATGAAGAAGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CCA 72 bp CACCCATACGTGAAGGAGTCCTTATGCTTCTTCATGTaGCTCTCAACATCAAAAGCCACTGGGAATGTCTGC +
Preference number: 6 (lower is better)
Translates to: HPYVKESLCFFM*LSTSKATGNVC
Trigger: GCAGACATTCCCAGTGGCTTTTGATGTTGAGAGCCACATGAAGAAGCATAAGGACTCCTTCACGTATGGGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CCA 72 bp AGGTCATGGGCTTCACTGTACTACCTGCAGTTGATCTaGGTCTCAAGTTCAAAAACTGCAGCAACTCTTCCC +
Preference number: 6 (lower is better)
Translates to: RSWASLYYLQLI*VSSSKTAATLP
Trigger: GGGAAGAGTTGCTGCAGTTTTTGAACTTGAGACCCAGATCAACTGCAGGTAGTACAGTGAAGCCCATGACCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CAA 90 bp GGCATCTCCTTAAGCTGCTTGGCAGGTGGGCTTCCCTTAACATCTTaGGCACCATCAAGAAATCTCTTTAAATTTTTGGTCTGCGCACTG +
Preference number: 6 (lower is better)
Translates to: GISLSCLAGGLPLTS*APSRNLFKFLVCAL
Trigger: CAGTGCGCAGACCAAAAATTTAAAGAGATTTCTTGATGGTGCCAAAGATGTTAAGGGAAGCCCACCTGCCAAGCAGCTTAAGGAGATGCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS TCA 72 bp TATGCAGGTCATGGGCTTCACTGTACTACCTGCAGTTaGTCTGGGTCTCAAGTTCAAAAACTGCAGCAACTC +
Preference number: 6 (lower is better)
Translates to: YAGHGLHCTTCS*SGSQVQKLQQL
Trigger: GAGTTGCTGCAGTTTTTGAACTTGAGACCCAGATCAACTGCAGGTAGTACAGTGAAGCCCATGACCTGCATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS GCA 72 bp TTGGCACCATCAAGAAATCTCTTTAAATTTTTGGTCTaGGCACTGTCAGCAGCCGTTAGTAGCGCATCCTGC +
Preference number: 6 (lower is better)
Translates to: LAPSRNLFKFLV*ALSAAVSSASC
Trigger: GCAGGATGCGCTACTAACGGCTGCTGACAGTGCGCAGACCAAAAATTTAAAGAGATTTCTTGATGGTGCCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CAA 72 bp GTATGCAGGTCATGGGCTTCACTGTACTACCTGCAGTaGATCTGGGTCTCAAGTTCAAAAACTGCAGCAACT +
Preference number: 6 (lower is better)
Translates to: VCRSWASLYYLQ*IWVSSSKTAAT
Trigger: AGTTGCTGCAGTTTTTGAACTTGAGACCCAGATCAACTGCAGGTAGTACAGTGAAGCCCATGACCTGCATAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CAA 90 bp CCCAGAAGGCACTTCACTATTAGCATGTCTAGGCTTCTCTTTGTCTaGGGAGAGACCTGGACAACTGCTTTTACTTGTTTTGGACTTTCC +
Preference number: 6 (lower is better)
Translates to: PRRHFTISMSRLLFV*GETWTTAFTCFGLS
Trigger: GGAAAGTCCAAAACAAGTAAAAGCAGTTGTCCAGGTCTCTCCCAAGACAAAGAGAAGCCTAGACATGCTAATAGTGAAGTGCCTTCTGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS TCA 72 bp TTCTCAGCACTATCAGCTGCATGTTTATGGAAATCCTaGGTATCGTTGCTGTGTGCTGGTGAGAGAACACTC +
Preference number: 6 (lower is better)
Translates to: FSALSAACLWKS*VSLLCAGERTL
Trigger: GAGTGTTCTCTCACCAGCACACAGCAACGATACTCAGGATTTCCATAAACATGCAGCTGATAGTGCTGAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CCA 72 bp AGCATGTCTAGGCTTCTCTTTGTCTTGGGAGAGACCTaGACAACTGCTTTTACTTGTTTTGGACTTTCCAGA +
Preference number: 6 (lower is better)
Translates to: SMSRLLFVLGET*TTAFTCFGLSR
Trigger: TCTGGAAAGTCCAAAACAAGTAAAAGCAGTTGTCCAGGTCTCTCCCAAGACAAAGAGAAGCCTAGACATGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CAA 72 bp ACATCTTTGGCACCATCAAGAAATCTCTTTAAATTTTaGGTCTGCGCACTGTCAGCAGCCGTTAGTAGCGCA +
Preference number: 6 (lower is better)
Translates to: TSLAPSRNLFKF*VCALSAAVSSA
Trigger: TGCGCTACTAACGGCTGCTGACAGTGCGCAGACCAAAAATTTAAAGAGATTTCTTGATGGTGCCAAAGATGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8
CDS CCA 72 bp ACTTCACTATTAGCATGTCTAGGCTTCTCTTTGTCTTaGGAGAGACCTGGACAACTGCTTTTACTTGTTTTG +
Preference number: 6 (lower is better)
Translates to: TSLLACLGFSLS*ERPGQLLLLVL
Trigger: CAAAACAAGTAAAAGCAGTTGTCCAGGTCTCTCCCAAGACAAAGAGAAGCCTAGACATGCTAATAGTGAAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063710.13
ENSMUST00000109155.8