RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZFP143 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000061079

Ensembl transcript IDs: ENSMUST00000084727.11, ENSMUST00000169638.4, ENSMUST00000209505.2, ENSMUST00000211798.2

Found 280 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GAAGAACTGCTGCAGAGCCCTCATTTCATTCTTCCTCGTACACAATaGATCACGTTGGGATTTCATTCCGGGGCTATGTACACAAAAGTG +
Preference number: 1 (lower is better)
Translates to: EELLQSPHFILPRTQ*ITLGFHSGAMYTKV
Trigger: CACTTTTGTGTACATAGCCCCGGAATGAAATCCCAACGTGATTCATTGTGTACGAGGAAGAATGAAATGAGGGCTCTGCAGCAGTTCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
3UTR TCA 90 bp CTTATGGGTGGATTTCAGGAATTTGCCATGTGGTCAAGAGTAGCATaGAGAACTGCTGCAGAGCCCTCATTTCATTCTTCCTCGTACACA +
Preference number: 1 (lower is better)
Translates to: LMGGFQEFAMWSRVA*RTAAEPSFHSSSYT
Trigger: TGTGTACGAGGAAGAATGAAATGAGGGCTCTGCAGCAGTTCTTCATGCTACTCTTGACCACATGGCAAATTCCTGAAATCCACCCATAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
3UTR GCA 90 bp ATTCACTACACAGCCCAGGTTAGTCTCACATTTATGTTCTCCTCCTaGATCAGGACTTTAATGCTGGGATTACAGGCACAAGCTGCCATT +
Preference number: 1 (lower is better)
Translates to: IHYTAQVSLTFMFSS*IRTLMLGLQAQAAI
Trigger: AATGGCAGCTTGTGCCTGTAATCCCAGCATTAAAGTCCTGATGCAGGAGGAGAACATAAATGTGAGACTAACCTGGGCTGTGTAGTGAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
3UTR CCA 90 bp TGCAGAGCCCTCATTTCATTCTTCCTCGTACACAATGAATCACGTTaGGATTTCATTCCGGGGCTATGTACACAAAAGTGTCAAGAAGAA +
Preference number: 1 (lower is better)
Translates to: CRALISFFLVHNESR*DFIPGLCTQKCQEE
Trigger: TTCTTCTTGACACTTTTGTGTACATAGCCCCGGAATGAAATCCCAACGTGATTCATTGTGTACGAGGAAGAATGAAATGAGGGCTCTGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
3UTR-3UTR CCA 90 bp CTGTGTTCAGACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTGCCATGTGGCCAGTGCTTCAGGAATaGAACTTCTGCTCTGCCGGG +
Preference number: 2 (lower is better)
Translates to: LCSDPADLMGGFQEFAMWPVLQE*NFCSAG
Trigger: CCCGGCAGAGCAGAAGTTCCATTCCTGAAGCACTGG...CCACATGGCAAATTCCTGAAATCCACCCATAAGATCAGCAGGGTCTGAACACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
3UTR-3UTR CCA 90 bp CATGTGGTCAAGAGTAGCATGAAGAACTGCTGCAGAGCCCTCATTTCATTCTTCCCAGTGCTTCAGGAATaGAACTTCTGCTCTGCCGGG +
Preference number: 2 (lower is better)
Translates to: HVVKSSMKNCCRALISFFPVLQE*NFCSAG
Trigger: CCCGGCAGAGCAGAAGTTCCATTCCTGAAGCACTGG...GAAGAATGAAATGAGGGCTCTGCAGCAGTTCTTCATGCTACTCTTGACCACATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
3UTR-3UTR TCA 90 bp GTTCTCCTCCTGCATCAGGACTTTAATGCTGGGATTACAGGCACAAGCTGCCATGAGGTCTTCAAACCTTaGAATCCAAGTAAACATGGG +
Preference number: 2 (lower is better)
Translates to: VLLLHQDFNAGITGTSCHEVFKP*NPSKHG
Trigger: CCCATGTTTACTTGGATTTCAAGGTTTGAAGACCTC...ATGGCAGCTTGTGCCTGTAATCCCAGCATTAAAGTCCTGATGCAGGAGGAGAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
3UTR-3UTR CCA 90 bp AATCACGTTGGGATTTCATTCCGGGGCTATGTACACAAAAGTGTCAAGAAGAAACCAGTGCTTCAGGAATaGAACTTCTGCTCTGCCGGG +
Preference number: 2 (lower is better)
Translates to: NHVGISFRGYVHKSVKKKPVLQE*NFCSAG
Trigger: CCCGGCAGAGCAGAAGTTCCATTCCTGAAGCACTGG...TTTCTTCTTGACACTTTTGTGTACATAGCCCCGGAATGAAATCCCAACGTGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
3UTR-3UTR TCA 90 bp TGTGTTCAGACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTGCCATGTGGTCTTCCTCGTACACAATaGATCACGTTGGGATTTCAT +
Preference number: 2 (lower is better)
Translates to: CVQTLLILWVDFRNLPCGLPRTQ*ITLGFH
Trigger: ATGAAATCCCAACGTGATTCATTGTGTACGAGGAAG...ACCACATGGCAAATTCCTGAAATCCACCCATAAGATCAGCAGGGTCTGAACACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
3UTR-3UTR GCA 90 bp TCATTCTTCCTCGTACACAATGAATCACGTTGGGATTTCATTCCGGGGCTATGTAATGTTCTCTACTCTTaGATAAAAATGTGTCCAGTG +
Preference number: 2 (lower is better)
Translates to: SFFLVHNESRWDFIPGLCNVLYS*IKMCPV
Trigger: CACTGGACACATTTTTATGCAAGAGTAGAGAACATT...ACATAGCCCCGGAATGAAATCCCAACGTGATTCATTGTGTACGAGGAAGAATGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
3UTR-3UTR GCA 90 bp ATGAAGAACTGCTGCAGAGCCCTCATTTCATTCTTCCTCGTACACAATGAATCAAATGTTCTCTACTCTTaGATAAAAATGTGTCCAGTG +
Preference number: 2 (lower is better)
Translates to: MKNCCRALISFFLVHNESNVLYS*IKMCPV
Trigger: CACTGGACACATTTTTATGCAAGAGTAGAGAACATT...TGATTCATTGTGTACGAGGAAGAATGAAATGAGGGCTCTGCAGCAGTTCTTCAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
3UTR-3UTR CCA 90 bp TGGCTTTGGAGTTATGATTGTTTCACATGTAGAACCTTCAGCACATTAGATACAACCCTGCTGATCTTATaGGTGGATTTCAGGAATTTG +
Preference number: 2 (lower is better)
Translates to: WLWSYDCFTCRTFSTLDTTLLIL*VDFRNL
Trigger: CAAATTCCTGAAATCCACCCATAAGATCAGCAGGGT...TGTATCTAATGTGCTGAAGGTTCTACATGTGAAACAATCATAACTCCAAAGCCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
3UTR-3UTR CCA 90 bp AATAATCAGCATTTTAGCTTGAAGAAGTGTTATATAACAGGGATGGGGCTCTATACCCTGCTGATCTTATaGGTGGATTTCAGGAATTTG +
Preference number: 2 (lower is better)
Translates to: NNQHFSLKKCYITGMGLYTLLIL*VDFRNL
Trigger: CAAATTCCTGAAATCCACCCATAAGATCAGCAGGGT...ATAGAGCCCCATCCCTGTTATATAACACTTCTTCAAGCTAAAATGCTGATTATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000211798.2
3UTR-3UTR GCA 90 bp TTGCATCCTTTATTCTGTGATGGCTTTGGAGTTATGATTGTTTCACATGTAGAAAATGTTCTCTACTCTTaGATAAAAATGTGTCCAGTG +
Preference number: 2 (lower is better)
Translates to: LHPLFCDGFGVMIVSHVENVLYS*IKMCPV
Trigger: CACTGGACACATTTTTATGCAAGAGTAGAGAACATT...TTCTACATGTGAAACAATCATAACTCCAAAGCCATCACAGAATAAAGGATGCAA
34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
3UTR GCA 72 bp AATGTGTCCAGTGCTTCAGGAATGGAACTTCTGCTCTaGCGGGCAGGGCTTCAGGGATTCTGCCGCCAGAGA +
Preference number: 3 (lower is better)
Translates to: NVSSASGMELLL*RAGLQGFCRQR
Trigger: TCTCTGGCGGCAGAATCCCTGAAGCCCTGCCCGGCAGAGCAGAAGTTCCATTCCTGAAGCACTGGACACATT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
3UTR TCA 72 bp TGCCGGGCAGGGCTTCAGGGATTCTGCCGCCAGAGATaGAAGGCTCCTCCTCCTGTTTTATTGCTCTGTAAT +
Preference number: 3 (lower is better)
Translates to: CRAGLQGFCRQR*KAPPPVLLLCN
Trigger: ATTACAGAGCAATAAAACAGGAGGAGGAGCCTTTCATCTCTGGCGGCAGAATCCCTGAAGCCCTGCCCGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
3UTR CCA 72 bp GCGCATCTTGACTGTGTTCAGACCCTGCTGATCTTATaGGTGGATTTCAGGAATTTGCCATGTGGTCAAGAG +
Preference number: 3 (lower is better)
Translates to: AHLDCVQTLLIL*VDFRNLPCGQE
Trigger: CTCTTGACCACATGGCAAATTCCTGAAATCCACCCATAAGATCAGCAGGGTCTGAACACAGTCAAGATGCGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
3UTR GCA 72 bp ACAGCCCAGGTTAGTCTCACATTTATGTTCTCCTCCTaGATCAGGACTTTAATGCTGGGATTACAGGCACAA +
Preference number: 3 (lower is better)
Translates to: TAQVSLTFMFSS*IRTLMLGLQAQ
Trigger: TTGTGCCTGTAATCCCAGCATTAAAGTCCTGATGCAGGAGGAGAACATAAATGTGAGACTAACCTGGGCTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
3UTR TCA 72 bp CAGGGATGGGGCTCTATAAATGAGGTCTTCAAACCTTaGAATCCAAGTAAACATGGGTGTGTATTAGGACAA +
Preference number: 3 (lower is better)
Translates to: QGWGSINEVFKP*NPSKHGCVLGQ
Trigger: TTGTCCTAATACACACCCATGTTTACTTGGATTTCAAGGTTTGAAGACCTCATTTATAGAGCCCCATCCCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000211798.2
3UTR CCA 72 bp CTCATTTCATTCTTCCTCGTACACAATGAATCACGTTaGGATTTCATTCCGGGGCTATGTACACAAAAGTGT +
Preference number: 3 (lower is better)
Translates to: LISFFLVHNESR*DFIPGLCTQKC
Trigger: ACACTTTTGTGTACATAGCCCCGGAATGAAATCCCAACGTGATTCATTGTGTACGAGGAAGAATGAAATGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp TGTCCAGTGCTTCAGGAATGGAACTTCTGCTCTGCCGGGCAGGGCTTCAGGGATCCCAGTGTGCAGCCCTaGCACTGTCCCATCAGCCTG +
Preference number: 4 (lower is better)
Translates to: CPVLQEWNFCSAGQGFRDPSVQP*HCPISL
Trigger: CAGGCTGATGGGACAGTGGCAGGGCTGCACACTGGG...ATCCCTGAAGCCCTGCCCGGCAGAGCAGAAGTTCCATTCCTGAAGCACTGGACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CCA 90 bp AGTGCTTCAGGAATGGAACTTCTGCTCTGCCGGGCAGGGCTTCAGGGATTCTGCGGCTCTGTGTCGTTGTaGGCTGTCCGTTTGTGCATG +
Preference number: 4 (lower is better)
Translates to: SASGMELLLCRAGLQGFCGSVSL*AVRLCM
Trigger: CATGCACAAACGGACAGCCCACAACGACACAGAGCC...GCAGAATCCCTGAAGCCCTGCCCGGCAGAGCAGAAGTTCCATTCCTGAAGCACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp TTCAGGGATTCTGCCGCCAGAGATGAAAGGCTCCTCCTCCTGTTTTATTGCTCTCGTGAGTGGGGACCGTaGTGGGTGTGCCATCCTGTG +
Preference number: 4 (lower is better)
Translates to: FRDSAARDERLLLLFYCSREWGP*WVCHPV
Trigger: CACAGGATGGCACACCCATCACGGTCCCCACTCACG...AGAGCAATAAAACAGGAGGAGGAGCCTTTCATCTCTGGCGGCAGAATCCCTGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp GCCGCCAGAGATGAAAGGCTCCTCCTCCTGTTTTATTGCTCTGTAATTCCGAGTCCCAGTGTGCAGCCCTaGCACTGTCCCATCAGCCTG +
Preference number: 4 (lower is better)
Translates to: AARDERLLLLFYCSVIPSPSVQP*HCPISL
Trigger: CAGGCTGATGGGACAGTGGCAGGGCTGCACACTGGG...ACTCGGAATTACAGAGCAATAAAACAGGAGGAGGAGCCTTTCATCTCTGGCGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp TGTCCAGTGCTTCAGGAATGGAACTTCTGCTCTGCCGGGCAGGGCTTCAGGGATTGGGCTGTCCGTTTGTaGATGGCCAGTGTGGAAATC +
Preference number: 4 (lower is better)
Translates to: CPVLQEWNFCSAGQGFRDWAVRL*MASVEI
Trigger: GATTTCCACACTGGCCATGCACAAACGGACAGCCCA...ATCCCTGAAGCCCTGCCCGGCAGAGCAGAAGTTCCATTCCTGAAGCACTGGACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp CAGTGCTTCAGGAATGGAACTTCTGCTCTGCCGGGCAGGGCTTCAGGGATTCTGGAACTGCGATCTGGGTaGCGTTGGATGTTGCCACTA +
Preference number: 4 (lower is better)
Translates to: QCFRNGTSALPGRASGILELRSG*RWMLPL
Trigger: TAGTGGCAACATCCAACGGCACCCAGATCGCAGTTC...CAGAATCCCTGAAGCCCTGCCCGGCAGAGCAGAAGTTCCATTCCTGAAGCACTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CCA 90 bp TGTCCAGTGCTTCAGGAATGGAACTTCTGCTCTGCCGGGCAGGGCTTCAGGGATCGATCTGGGTGCCGTTaGATGTTGCCACTAAGGTCA +
Preference number: 4 (lower is better)
Translates to: CPVLQEWNFCSAGQGFRDRSGCR*MLPLRS
Trigger: TGACCTTAGTGGCAACATCCAACGGCACCCAGATCG...ATCCCTGAAGCCCTGCCCGGCAGAGCAGAAGTTCCATTCCTGAAGCACTGGACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp AGTGCTTCAGGAATGGAACTTCTGCTCTGCCGGGCAGGGCTTCAGGGATTCTGCATGAGTGTGACTTGTTaGCTCAGCCCAGACTGGGTT +
Preference number: 4 (lower is better)
Translates to: SASGMELLLCRAGLQGFCMSVTC*LSPDWV
Trigger: AACCCAGTCTGGGCTGAGTCAACAAGTCACACTCAT...GCAGAATCCCTGAAGCCCTGCCCGGCAGAGCAGAAGTTCCATTCCTGAAGCACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp AGTGCTTCAGGAATGGAACTTCTGCTCTGCCGGGCAGGGCTTCAGGGATTCTGCAGAATGTGTTCCTGCTaGGGAGATGACTGCATCGTG +
Preference number: 4 (lower is better)
Translates to: SASGMELLLCRAGLQGFCRMCSC*GDDCIV
Trigger: CACGATGCAGTCATCTCCTCAGCAGGAACACATTCT...GCAGAATCCCTGAAGCCCTGCCCGGCAGAGCAGAAGTTCCATTCCTGAAGCACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CCA 90 bp AGTGCTTCAGGAATGGAACTTCTGCTCTGCCGGGCAGGGCTTCAGGGATTCTGCTCTTTCGAGGTGTGGTaGATAAATGCAGTGGTCCCG +
Preference number: 4 (lower is better)
Translates to: SASGMELLLCRAGLQGFCSFEVW*INAVVP
Trigger: CGGGACCACTGCATTTATCCACCACACCTCGAAAGA...GCAGAATCCCTGAAGCCCTGCCCGGCAGAGCAGAAGTTCCATTCCTGAAGCACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084727.11
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CCA 90 bp GGCAGGGCTTCAGGGATTCTGCCGCCAGAGATGAAAGGCTCCTCCTCCTGTTTTTCTTTCGAGGTGTGGTaGATAAATGCAGTGGTCCCG +
Preference number: 4 (lower is better)
Translates to: GRASGILPPEMKGSSSCFSFEVW*INAVVP
Trigger: CGGGACCACTGCATTTATCCACCACACCTCGAAAGA...AAAACAGGAGGAGGAGCCTTTCATCTCTGGCGGCAGAATCCCTGAAGCCCTGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084727.11
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp GCCGCCAGAGATGAAAGGCTCCTCCTCCTGTTTTATTGCTCTGTAATTCCGAGTCCGGTCTCCTGTGTGTaGGCGCTCATGGACCTTAAG +
Preference number: 4 (lower is better)
Translates to: AARDERLLLLFYCSVIPSPVSCV*ALMDLK
Trigger: CTTAAGGTCCATGAGCGCTCACACACAGGAGACCGG...ACTCGGAATTACAGAGCAATAAAACAGGAGGAGGAGCCTTTCATCTCTGGCGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp TTCAGGGATTCTGCCGCCAGAGATGAAAGGCTCCTCCTCCTGTTTTATTGCTCTGAGATGACTGCATCGTaGGTGGGGACCGTGATGGGT +
Preference number: 4 (lower is better)
Translates to: FRDSAARDERLLLLFYCSEMTAS*VGTVMG
Trigger: ACCCATCACGGTCCCCACTCACGATGCAGTCATCTC...AGAGCAATAAAACAGGAGGAGGAGCCTTTCATCTCTGGCGGCAGAATCCCTGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp AATGTGTCCAGTGCTTCAGGAATGGAACTTCTGCTCTGCCGGGCAGGGCTTCAGAGAATGTGTTCCTGCTaGGGAGATGACTGCATCGTG +
Preference number: 4 (lower is better)
Translates to: NVSSASGMELLLCRAGLQRMCSC*GDDCIV
Trigger: CACGATGCAGTCATCTCCTCAGCAGGAACACATTCT...CTGAAGCCCTGCCCGGCAGAGCAGAAGTTCCATTCCTGAAGCACTGGACACATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp CATGTGGTCAAGAGTAGCATGAAGAACTGCTGCAGAGCCCTCATTTCATTCTTCCCCAGTGTGCAGCCCTaGCACTGTCCCATCAGCCTG +
Preference number: 4 (lower is better)
Translates to: HVVKSSMKNCCRALISFFPSVQP*HCPISL
Trigger: CAGGCTGATGGGACAGTGGCAGGGCTGCACACTGGG...GAAGAATGAAATGAGGGCTCTGCAGCAGTTCTTCATGCTACTCTTGACCACATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp CAGTGCTTCAGGAATGGAACTTCTGCTCTGCCGGGCAGGGCTTCAGGGATTCTGTTTTCTCCACTCTGCTaGGATTTAGGAGTTACCCGA +
Preference number: 4 (lower is better)
Translates to: QCFRNGTSALPGRASGILFSPLC*DLGVTR
Trigger: TCGGGTAACTCCTAAATCTCAGCAGAGTGGAGAAAA...CAGAATCCCTGAAGCCCTGCCCGGCAGAGCAGAAGTTCCATTCCTGAAGCACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp CTGTGTTCAGACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTGCCATGTGGCCGGTCTCCTGTGTGTaGGCGCTCATGGACCTTAAG +
Preference number: 4 (lower is better)
Translates to: LCSDPADLMGGFQEFAMWPVSCV*ALMDLK
Trigger: CTTAAGGTCCATGAGCGCTCACACACAGGAGACCGG...CCACATGGCAAATTCCTGAAATCCACCCATAAGATCAGCAGGGTCTGAACACAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp AGTGCTTCAGGAATGGAACTTCTGCTCTGCCGGGCAGGGCTTCAGGGATTCTGCTTGAGTCCCATCCTGTaGTATGAGTGTGACTTGTTG +
Preference number: 4 (lower is better)
Translates to: SASGMELLLCRAGLQGFCLSPIL*YECDLL
Trigger: CAACAAGTCACACTCATATCACAGGATGGGACTCAA...GCAGAATCCCTGAAGCCCTGCCCGGCAGAGCAGAAGTTCCATTCCTGAAGCACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp TCATTCTTCCTCGTACACAATGAATCACGTTGGGATTTCATTCCGGGGCTATGTCGTGAGTGGGGACCGTaGTGGGTGTGCCATCCTGTG +
Preference number: 4 (lower is better)
Translates to: SFFLVHNESRWDFIPGLCREWGP*WVCHPV
Trigger: CACAGGATGGCACACCCATCACGGTCCCCACTCACG...ACATAGCCCCGGAATGAAATCCCAACGTGATTCATTGTGTACGAGGAAGAATGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp CTCGTACACAATGAATCACGTTGGGATTTCATTCCGGGGCTATGTACACAAAAGCGTGAGTGGGGACCGTaGTGGGTGTGCCATCCTGTG +
Preference number: 4 (lower is better)
Translates to: LVHNESRWDFIPGLCTQKREWGP*WVCHPV
Trigger: CACAGGATGGCACACCCATCACGGTCCCCACTCACG...CTTTTGTGTACATAGCCCCGGAATGAAATCCCAACGTGATTCATTGTGTACGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp AGCATGAAGAACTGCTGCAGAGCCCTCATTTCATTCTTCCTCGTACACAATGAACCCAGTGTGCAGCCCTaGCACTGTCCCATCAGCCTG +
Preference number: 4 (lower is better)
Translates to: SMKNCCRALISFFLVHNEPSVQP*HCPISL
Trigger: CAGGCTGATGGGACAGTGGCAGGGCTGCACACTGGG...TTCATTGTGTACGAGGAAGAATGAAATGAGGGCTCTGCAGCAGTTCTTCATGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp GGCAGGGCTTCAGGGATTCTGCCGCCAGAGATGAAAGGCTCCTCCTCCTGTTTTACCTTTGCTGCGTACTaGTCCAAAGCACTAATGGTA +
Preference number: 4 (lower is better)
Translates to: GRASGILPPEMKGSSSCFTFAAY*SKALMV
Trigger: TACCATTAGTGCTTTGGAGCAGTACGCAGCAAAGGT...AAAACAGGAGGAGGAGCCTTTCATCTCTGGCGGCAGAATCCCTGAAGCCCTGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp GTTCTCCTCCTGCATCAGGACTTTAATGCTGGGATTACAGGCACAAGCTGCCATAGTTGCGCTGGCAAATaGCCTCCCACATCCAGGTTC +
Preference number: 4 (lower is better)
Translates to: VLLLHQDFNAGITGTSCHSCAGK*PPTSRF
Trigger: GAACCTGGATGTGGGAGGGCATTTGCCAGCGCAACT...ATGGCAGCTTGTGCCTGTAATCCCAGCATTAAAGTCCTGATGCAGGAGGAGAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
CDS-3UTR GCA 90 bp TGTCCAGTGCTTCAGGAATGGAACTTCTGCTCTGCCGGGCAGGGCTTCAGGGATATCTTGAGCTACAATTaGGACCTGCTGTCCTTCTGT +
Preference number: 4 (lower is better)
Translates to: CPVLQEWNFCSAGQGFRDILSYN*DLLSFC
Trigger: ACAGAAGGACAGCAGGTCGCAATTGTAGCTCAAGAT...ATCCCTGAAGCCCTGCCCGGCAGAGCAGAAGTTCCATTCCTGAAGCACTGGACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp TGTCCAGTGCTTCAGGAATGGAACTTCTGCTCTGCCGGGCAGGGCTTCAGGGATTGCTGTATGGAACGCTaGCAGATCTTGAGCTACAAT +
Preference number: 4 (lower is better)
Translates to: CPVLQEWNFCSAGQGFRDCCMER*QILSYN
Trigger: ATTGTAGCTCAAGATCTGGCAGCGTTCCATACAGCA...ATCCCTGAAGCCCTGCCCGGCAGAGCAGAAGTTCCATTCCTGAAGCACTGGACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CCA 90 bp CAGTGCTTCAGGAATGGAACTTCTGCTCTGCCGGGCAGGGCTTCAGGGATTCTGTGTGCATGGCCAGTGTaGAAATCTGTTTGTACGTCT +
Preference number: 4 (lower is better)
Translates to: QCFRNGTSALPGRASGILCAWPV*KSVCTS
Trigger: AGACGTACAAACAGATTTCCACACTGGCCATGCACA...CAGAATCCCTGAAGCCCTGCCCGGCAGAGCAGAAGTTCCATTCCTGAAGCACTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CCA 90 bp CTGTGTTCAGACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTGCCATGTGGCCTGCTCCTCCTCAATaGGCTCTGTGTCGTTGTGGG +
Preference number: 4 (lower is better)
Translates to: LCSDPADLMGGFQEFAMWPAPPQ*ALCRCG
Trigger: CCCACAACGACACAGAGCCCATTGAGGAGGAGCAGG...CCACATGGCAAATTCCTGAAATCCACCCATAAGATCAGCAGGGTCTGAACACAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp AGTGCTTCAGGAATGGAACTTCTGCTCTGCCGGGCAGGGCTTCAGGGATTCTGCCACTTTTCTGATATTTaGTGTGGTAAAGGACCGACC +
Preference number: 4 (lower is better)
Translates to: SASGMELLLCRAGLQGFCHFSDI*CGKGPT
Trigger: GGTCGGTCCTTTACCACATCAAATATCAGAAAAGTG...GCAGAATCCCTGAAGCCCTGCCCGGCAGAGCAGAAGTTCCATTCCTGAAGCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp TTCAGGGATTCTGCCGCCAGAGATGAAAGGCTCCTCCTCCTGTTTTATTGCTCTCCTGTGTTACCATGGTaGTGGTGTTGCCAATGGCCT +
Preference number: 4 (lower is better)
Translates to: FRDSAARDERLLLLFYCSPVLPW*WCCQWP
Trigger: AGGCCATTGGCAACACCATCACCATGGTAACACAGG...AGAGCAATAAAACAGGAGGAGGAGCCTTTCATCTCTGGCGGCAGAATCCCTGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp TTCAGGGATTCTGCCGCCAGAGATGAAAGGCTCCTCCTCCTGTTTTATTGCTCTAACGCTGCCAGATCTTaGGCTACAATTGCGACCTGC +
Preference number: 4 (lower is better)
Translates to: FRDSAARDERLLLLFYCSNAARS*ATIATC
Trigger: GCAGGTCGCAATTGTAGCTCAAGATCTGGCAGCGTT...AGAGCAATAAAACAGGAGGAGGAGCCTTTCATCTCTGGCGGCAGAATCCCTGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp GACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTGCCATGTGGTCAAGAGTAGTCCCGTCTTCTAGCTaGACTGCTTGCCCATCCTCC +
Preference number: 4 (lower is better)
Translates to: DPADLMGGFQEFAMWSRVVPSSS*TACPSS
Trigger: GGAGGATGGGCAAGCAGTGCAGCTAGAAGACGGGAC...TACTCTTGACCACATGGCAAATTCCTGAAATCCACCCATAAGATCAGCAGGGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084727.11
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp TGTCCAGTGCTTCAGGAATGGAACTTCTGCTCTGCCGGGCAGGGCTTCAGGGATCACATCCAGGTTCTGTaGAGTAATAAGGTCTTTCTC +
Preference number: 4 (lower is better)
Translates to: CPVLQEWNFCSAGQGFRDHIQVL*SNKVFL
Trigger: GAGAAAGACCTTATTACTGCACAGAACCTGGATGTG...ATCCCTGAAGCCCTGCCCGGCAGAGCAGAAGTTCCATTCCTGAAGCACTGGACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CCA 90 bp AATGTGTCCAGTGCTTCAGGAATGGAACTTCTGCTCTGCCGGGCAGGGCTTCAGCCTGAATTGCCAAGATaGTATCAGACTGTGGGACTT +
Preference number: 4 (lower is better)
Translates to: NVSSASGMELLLCRAGLQPELPR*YQTVGL
Trigger: AAGTCCCACAGTCTGATACCATCTTGGCAATTCAGG...CTGAAGCCCTGCCCGGCAGAGCAGAAGTTCCATTCCTGAAGCACTGGACACATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CCA 90 bp TGTGTTCAGACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTGCCATGTGGTCCTGCTCCTCCTCAATaGGCTCTGTGTCGTTGTGGG +
Preference number: 4 (lower is better)
Translates to: CVQTLLILWVDFRNLPCGPAPPQ*ALCRCG
Trigger: CCCACAACGACACAGAGCCCATTGAGGAGGAGCAGG...ACCACATGGCAAATTCCTGAAATCCACCCATAAGATCAGCAGGGTCTGAACACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CCA 90 bp TTCAGGGATTCTGCCGCCAGAGATGAAAGGCTCCTCCTCCTGTTTTATTGCTCTCGATCTGGGTGCCGTTaGATGTTGCCACTAAGGTCA +
Preference number: 4 (lower is better)
Translates to: FRDSAARDERLLLLFYCSRSGCR*MLPLRS
Trigger: TGACCTTAGTGGCAACATCCAACGGCACCCAGATCG...AGAGCAATAAAACAGGAGGAGGAGCCTTTCATCTCTGGCGGCAGAATCCCTGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp TGTGTTCAGACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTGCCATGTGGTAGAACATCATCACCTTaGCCTGGGGGAGGCTCGAAG +
Preference number: 4 (lower is better)
Translates to: CVQTLLILWVDFRNLPCGRTSSP*PGGGSK
Trigger: CTTCGAGCCTCCCCCAGGTCAAGGTGATGATGTTCT...ACCACATGGCAAATTCCTGAAATCCACCCATAAGATCAGCAGGGTCTGAACACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp GCGCATCTTGACTGTGTTCAGACCCTGCTGATCTTATGGGTGGATTTCAGGAATCCTGTGTTACCATGGTaGTGGTGTTGCCAATGGCCT +
Preference number: 4 (lower is better)
Translates to: AHLDCVQTLLILWVDFRNPVLPW*WCCQWP
Trigger: AGGCCATTGGCAACACCATCACCATGGTAACACAGG...ATTCCTGAAATCCACCCATAAGATCAGCAGGGTCTGAACACAGTCAAGATGCGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp AATCACGTTGGGATTTCATTCCGGGGCTATGTACACAAAAGTGTCAAGAAGAAACGTGAGTGGGGACCGTaGTGGGTGTGCCATCCTGTG +
Preference number: 4 (lower is better)
Translates to: NHVGISFRGYVHKSVKKKREWGP*WVCHPV
Trigger: CACAGGATGGCACACCCATCACGGTCCCCACTCACG...TTTCTTCTTGACACTTTTGTGTACATAGCCCCGGAATGAAATCCCAACGTGATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp TCATTCTTCCTCGTACACAATGAATCACGTTGGGATTTCATTCCGGGGCTATGTGAGATGACTGCATCGTaGGTGGGGACCGTGATGGGT +
Preference number: 4 (lower is better)
Translates to: SFFLVHNESRWDFIPGLCEMTAS*VGTVMG
Trigger: ACCCATCACGGTCCCCACTCACGATGCAGTCATCTC...ACATAGCCCCGGAATGAAATCCCAACGTGATTCATTGTGTACGAGGAAGAATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp CTGTGTTCAGACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTGCCATGTGGAACGCTGCCAGATCTTaGGCTACAATTGCGACCTGC +
Preference number: 4 (lower is better)
Translates to: LCSDPADLMGGFQEFAMWNAARS*ATIATC
Trigger: GCAGGTCGCAATTGTAGCTCAAGATCTGGCAGCGTT...CCACATGGCAAATTCCTGAAATCCACCCATAAGATCAGCAGGGTCTGAACACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp CTCGTACACAATGAATCACGTTGGGATTTCATTCCGGGGCTATGTACACAAAAGGTCCCGTCTTCTAGCTaGACTGCTTGCCCATCCTCC +
Preference number: 4 (lower is better)
Translates to: LVHNESRWDFIPGLCTQKVPSSS*TACPSS
Trigger: GGAGGATGGGCAAGCAGTGCAGCTAGAAGACGGGAC...CTTTTGTGTACATAGCCCCGGAATGAAATCCCAACGTGATTCATTGTGTACGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084727.11
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp GACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTGCCATGTGGTCAAGAGTAAGTTGCGCTGGCAAATaGCCTCCCACATCCAGGTTC +
Preference number: 4 (lower is better)
Translates to: DPADLMGGFQEFAMWSRVSCAGK*PPTSRF
Trigger: GAACCTGGATGTGGGAGGGCATTTGCCAGCGCAACT...TACTCTTGACCACATGGCAAATTCCTGAAATCCACCCATAAGATCAGCAGGGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp AATGTGTCCAGTGCTTCAGGAATGGAACTTCTGCTCTGCCGGGCAGGGCTTCAGGTTTTTATAATTAGTTaGGCTGGCAAATGCCCTCCC +
Preference number: 4 (lower is better)
Translates to: NVSSASGMELLLCRAGLQVFIIS*AGKCPP
Trigger: GGGAGGGCATTTGCCAGCGCAACTAATTATAAAAAC...CTGAAGCCCTGCCCGGCAGAGCAGAAGTTCCATTCCTGAAGCACTGGACACATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CCA 90 bp GACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTGCCATGTGGTCAAGAGTAGGCTCTGTGTCGTTGTaGGCTGTCCGTTTGTGCATG +
Preference number: 4 (lower is better)
Translates to: DPADLMGGFQEFAMWSRVGSVSL*AVRLCM
Trigger: CATGCACAAACGGACAGCCCACAACGACACAGAGCC...TACTCTTGACCACATGGCAAATTCCTGAAATCCACCCATAAGATCAGCAGGGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CCA 90 bp AGCATGAAGAACTGCTGCAGAGCCCTCATTTCATTCTTCCTCGTACACAATGAACCTGCTCCTCCTCAATaGGCTCTGTGTCGTTGTGGG +
Preference number: 4 (lower is better)
Translates to: SMKNCCRALISFFLVHNEPAPPQ*ALCRCG
Trigger: CCCACAACGACACAGAGCCCATTGAGGAGGAGCAGG...TTCATTGTGTACGAGGAAGAATGAAATGAGGGCTCTGCAGCAGTTCTTCATGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp TGTGTTCAGACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTGCCATGTGGTCACAGGGTAACATGTTaGGCCTCCATTCCTCCTCCA +
Preference number: 4 (lower is better)
Translates to: CVQTLLILWVDFRNLPCGHRVTC*ASIPPP
Trigger: TGGAGGAGGAATGGAGGCTCAACATGTTACCCTGTG...ACCACATGGCAAATTCCTGAAATCCACCCATAAGATCAGCAGGGTCTGAACACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp GACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTGCCATGTGGTCAAGAGTACACAGGGTAACATGTTaGGCCTCCATTCCTCCTCCA +
Preference number: 4 (lower is better)
Translates to: DPADLMGGFQEFAMWSRVHRVTC*ASIPPP
Trigger: TGGAGGAGGAATGGAGGCTCAACATGTTACCCTGTG...TACTCTTGACCACATGGCAAATTCCTGAAATCCACCCATAAGATCAGCAGGGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp TGTGTTCAGACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTGCCATGTGGTTGCTTTCCCACAGCCTaGATGCTCACACTGGTAAGG +
Preference number: 4 (lower is better)
Translates to: CVQTLLILWVDFRNLPCGCFPTA*MLTLVR
Trigger: CCTTACCAGTGTGAGCATTCAGGCTGTGGGAAAGCA...ACCACATGGCAAATTCCTGAAATCCACCCATAAGATCAGCAGGGTCTGAACACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp TCTTCCTCGTACACAATGAATCACGTTGGGATTTCATTCCGGGGCTATGTACACTGCTTTCCCACAGCCTaGATGCTCACACTGGTAAGG +
Preference number: 4 (lower is better)
Translates to: SSSYTMNHVGISFRGYVHCFPTA*MLTLVR
Trigger: CCTTACCAGTGTGAGCATTCAGGCTGTGGGAAAGCA...GTGTACATAGCCCCGGAATGAAATCCCAACGTGATTCATTGTGTACGAGGAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp GCCGCCAGAGATGAAAGGCTCCTCCTCCTGTTTTATTGCTCTGTAATTCCGAGTCTCCTGTATGGGTTCTaGTGTGCTTCTGTAGATCTC +
Preference number: 4 (lower is better)
Translates to: AARDERLLLLFYCSVIPSLLYGF*CASVDL
Trigger: GAGATCTACAGAAGCACATCAGAACCCATACAGGAG...ACTCGGAATTACAGAGCAATAAAACAGGAGGAGGAGCCTTTCATCTCTGGCGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp CTCATTTCATTCTTCCTCGTACACAATGAATCACGTTGGGATTTCATTCCGGGGAGAACATCATCACCTTaGCCTGGGGGAGGCTCGAAG +
Preference number: 4 (lower is better)
Translates to: LISFFLVHNESRWDFIPGRTSSP*PGGGSK
Trigger: CTTCGAGCCTCCCCCAGGTCAAGGTGATGATGTTCT...CCCCGGAATGAAATCCCAACGTGATTCATTGTGTACGAGGAAGAATGAAATGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp AGCATGAAGAACTGCTGCAGAGCCCTCATTTCATTCTTCCTCGTACACAATGAAAGAACATCATCACCTTaGCCTGGGGGAGGCTCGAAG +
Preference number: 4 (lower is better)
Translates to: SMKNCCRALISFFLVHNERTSSP*PGGGSK
Trigger: CTTCGAGCCTCCCCCAGGTCAAGGTGATGATGTTCT...TTCATTGTGTACGAGGAAGAATGAAATGAGGGCTCTGCAGCAGTTCTTCATGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp ATGAAGAACTGCTGCAGAGCCCTCATTTCATTCTTCCTCGTACACAATGAATCAGTCCCGTCTTCTAGCTaGACTGCTTGCCCATCCTCC +
Preference number: 4 (lower is better)
Translates to: MKNCCRALISFFLVHNESVPSSS*TACPSS
Trigger: GGAGGATGGGCAAGCAGTGCAGCTAGAAGACGGGAC...TGATTCATTGTGTACGAGGAAGAATGAAATGAGGGCTCTGCAGCAGTTCTTCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084727.11
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp GCAGAGCCCTCATTTCATTCTTCCTCGTACACAATGAATCACGTTGGGATTTCAAGTTGCGCTGGCAAATaGCCTCCCACATCCAGGTTC +
Preference number: 4 (lower is better)
Translates to: AEPSFHSSSYTMNHVGISSCAGK*PPTSRF
Trigger: GAACCTGGATGTGGGAGGGCATTTGCCAGCGCAACT...TGAAATCCCAACGTGATTCATTGTGTACGAGGAAGAATGAAATGAGGGCTCTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp GACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTGCCATGTGGTCAAGAGTAGAACTGCGATCTGGGTaGCGTTGGATGTTGCCACTA +
Preference number: 4 (lower is better)
Translates to: DPADLMGGFQEFAMWSRVELRSG*RWMLPL
Trigger: TAGTGGCAACATCCAACGGCACCCAGATCGCAGTTC...TACTCTTGACCACATGGCAAATTCCTGAAATCCACCCATAAGATCAGCAGGGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp AATGTGTCCAGTGCTTCAGGAATGGAACTTCTGCTCTGCCGGGCAGGGCTTCAGTTGTTGGATCCTCGATaGTATTCTGATAGCTTCTTC +
Preference number: 4 (lower is better)
Translates to: NVSSASGMELLLCRAGLQLLDPR*YSDSFF
Trigger: GAAGAAGCTATCAGAATAGCATCGAGGATCCAACAA...CTGAAGCCCTGCCCGGCAGAGCAGAAGTTCCATTCCTGAAGCACTGGACACATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CCA 90 bp GACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTGCCATGTGGTCAAGAGTATATCTGGGTCAATTGTaGCATCCCCAGTGTGCAGCC +
Preference number: 4 (lower is better)
Translates to: DPADLMGGFQEFAMWSRVYLGQL*HPQCAA
Trigger: GGCTGCACACTGGGGATGCCACAATTGACCCAGATA...TACTCTTGACCACATGGCAAATTCCTGAAATCCACCCATAAGATCAGCAGGGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CCA 90 bp TGTGTTCAGACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTGCCATGTGGTTATCTGGGTCAATTGTaGCATCCCCAGTGTGCAGCC +
Preference number: 4 (lower is better)
Translates to: CVQTLLILWVDFRNLPCGYLGQL*HPQCAA
Trigger: GGCTGCACACTGGGGATGCCACAATTGACCCAGATA...ACCACATGGCAAATTCCTGAAATCCACCCATAAGATCAGCAGGGTCTGAACACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp TTAAAAGCGCATCTTGACTGTGTTCAGACCCTGCTGATCTTATGGGTGGATTTCCACAGGGTAACATGTTaGGCCTCCATTCCTCCTCCA +
Preference number: 4 (lower is better)
Translates to: LKAHLDCVQTLLILWVDFHRVTC*ASIPPP
Trigger: TGGAGGAGGAATGGAGGCTCAACATGTTACCCTGTG...GAAATCCACCCATAAGATCAGCAGGGTCTGAACACAGTCAAGATGCGCTTTTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp GTTAGTCTCACATTTATGTTCTCCTCCTGCATCAGGACTTTAATGCTGGGATTACCGGTCTCCTGTGTGTaGGCGCTCATGGACCTTAAG +
Preference number: 4 (lower is better)
Translates to: VSLTFMFSSCIRTLMLGLPVSCV*ALMDLK
Trigger: CTTAAGGTCCATGAGCGCTCACACACAGGAGACCGG...TAATCCCAGCATTAAAGTCCTGATGCAGGAGGAGAACATAAATGTGAGACTAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
CDS-3UTR TCA 90 bp AATCACGTTGGGATTTCATTCCGGGGCTATGTACACAAAAGTGTCAAGAAGAAACCGGTCTCCTGTGTGTaGGCGCTCATGGACCTTAAG +
Preference number: 4 (lower is better)
Translates to: NHVGISFRGYVHKSVKKKPVSCV*ALMDLK
Trigger: CTTAAGGTCCATGAGCGCTCACACACAGGAGACCGG...TTTCTTCTTGACACTTTTGTGTACATAGCCCCGGAATGAAATCCCAACGTGATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp GCAGAGCCCTCATTTCATTCTTCCTCGTACACAATGAATCACGTTGGGATTTCATGCTTTCCCACAGCCTaGATGCTCACACTGGTAAGG +
Preference number: 4 (lower is better)
Translates to: AEPSFHSSSYTMNHVGISCFPTA*MLTLVR
Trigger: CCTTACCAGTGTGAGCATTCAGGCTGTGGGAAAGCA...TGAAATCCCAACGTGATTCATTGTGTACGAGGAAGAATGAAATGAGGGCTCTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp TTAAAAGCGCATCTTGACTGTGTTCAGACCCTGCTGATCTTATGGGTGGATTTCTGCTTTCCCACAGCCTaGATGCTCACACTGGTAAGG +
Preference number: 4 (lower is better)
Translates to: LKAHLDCVQTLLILWVDFCFPTA*MLTLVR
Trigger: CCTTACCAGTGTGAGCATTCAGGCTGTGGGAAAGCA...GAAATCCACCCATAAGATCAGCAGGGTCTGAACACAGTCAAGATGCGCTTTTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp GACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTGCCATGTGGTCAAGAGTAATGAGTGTGACTTGTTaGCTCAGCCCAGACTGGGTT +
Preference number: 4 (lower is better)
Translates to: DPADLMGGFQEFAMWSRVMSVTC*LSPDWV
Trigger: AACCCAGTCTGGGCTGAGTCAACAAGTCACACTCAT...TACTCTTGACCACATGGCAAATTCCTGAAATCCACCCATAAGATCAGCAGGGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp TTCAGGGATTCTGCCGCCAGAGATGAAAGGCTCCTCCTCCTGTTTTATTGCTCTCAGCTTGAGATATGTTaGCATGTTGAGTCCCATCCT +
Preference number: 4 (lower is better)
Translates to: FRDSAARDERLLLLFYCSQLEIC*HVESHP
Trigger: AGGATGGGACTCAACATGTCAACATATCTCAAGCTG...AGAGCAATAAAACAGGAGGAGGAGCCTTTCATCTCTGGCGGCAGAATCCCTGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp TCATTCTTCCTCGTACACAATGAATCACGTTGGGATTTCATTCCGGGGCTATGTCCTGTGTTACCATGGTaGTGGTGTTGCCAATGGCCT +
Preference number: 4 (lower is better)
Translates to: SFFLVHNESRWDFIPGLCPVLPW*WCCQWP
Trigger: AGGCCATTGGCAACACCATCACCATGGTAACACAGG...ACATAGCCCCGGAATGAAATCCCAACGTGATTCATTGTGTACGAGGAAGAATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp AGCATGAAGAACTGCTGCAGAGCCCTCATTTCATTCTTCCTCGTACACAATGAAAACGCTGCCAGATCTTaGGCTACAATTGCGACCTGC +
Preference number: 4 (lower is better)
Translates to: SMKNCCRALISFFLVHNENAARS*ATIATC
Trigger: GCAGGTCGCAATTGTAGCTCAAGATCTGGCAGCGTT...TTCATTGTGTACGAGGAAGAATGAAATGAGGGCTCTGCAGCAGTTCTTCATGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp TTCAGGGATTCTGCCGCCAGAGATGAAAGGCTCCTCCTCCTGTTTTATTGCTCTACCTTTGCTGCGTACTaGTCCAAAGCACTAATGGTA +
Preference number: 4 (lower is better)
Translates to: FRDSAARDERLLLLFYCSTFAAY*SKALMV
Trigger: TACCATTAGTGCTTTGGAGCAGTACGCAGCAAAGGT...AGAGCAATAAAACAGGAGGAGGAGCCTTTCATCTCTGGCGGCAGAATCCCTGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp GCCCTCATTTCATTCTTCCTCGTACACAATGAATCACGTTGGGATTTCATTCCGTGGGCTGTCCGTTTGTaGATGGCCAGTGTGGAAATC +
Preference number: 4 (lower is better)
Translates to: ALISFFLVHNESRWDFIPWAVRL*MASVEI
Trigger: GATTTCCACACTGGCCATGCACAAACGGACAGCCCA...CGGAATGAAATCCCAACGTGATTCATTGTGTACGAGGAAGAATGAAATGAGGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp CTCATTTCATTCTTCCTCGTACACAATGAATCACGTTGGGATTTCATTCCGGGGTCGAAGAAGGCTTCCTaGTCCTCCTCAATGGGCTCT +
Preference number: 4 (lower is better)
Translates to: LISFFLVHNESRWDFIPGSKKAS*SSSMGS
Trigger: AGAGCCCATTGAGGAGGAGCAGGAAGCCTTCTTCGA...CCCCGGAATGAAATCCCAACGTGATTCATTGTGTACGAGGAAGAATGAAATGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp AGCATGAAGAACTGCTGCAGAGCCCTCATTTCATTCTTCCTCGTACACAATGAATCGAAGAAGGCTTCCTaGTCCTCCTCAATGGGCTCT +
Preference number: 4 (lower is better)
Translates to: SMKNCCRALISFFLVHNESKKAS*SSSMGS
Trigger: AGAGCCCATTGAGGAGGAGCAGGAAGCCTTCTTCGA...TTCATTGTGTACGAGGAAGAATGAAATGAGGGCTCTGCAGCAGTTCTTCATGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp CTCGTACACAATGAATCACGTTGGGATTTCATTCCGGGGCTATGTACACAAAAGTCGAAGAAGGCTTCCTaGTCCTCCTCAATGGGCTCT +
Preference number: 4 (lower is better)
Translates to: LVHNESRWDFIPGLCTQKSKKAS*SSSMGS
Trigger: AGAGCCCATTGAGGAGGAGCAGGAAGCCTTCTTCGA...CTTTTGTGTACATAGCCCCGGAATGAAATCCCAACGTGATTCATTGTGTACGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp TTCAGGGATTCTGCCGCCAGAGATGAAAGGCTCCTCCTCCTGTTTTATTGCTCTTGCTGTATGGAACGCTaGCAGATCTTGAGCTACAAT +
Preference number: 4 (lower is better)
Translates to: FRDSAARDERLLLLFYCSCCMER*QILSYN
Trigger: ATTGTAGCTCAAGATCTGGCAGCGTTCCATACAGCA...AGAGCAATAAAACAGGAGGAGGAGCCTTTCATCTCTGGCGGCAGAATCCCTGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp AGCATGAAGAACTGCTGCAGAGCCCTCATTTCATTCTTCCTCGTACACAATGAAGAACTGCGATCTGGGTaGCGTTGGATGTTGCCACTA +
Preference number: 4 (lower is better)
Translates to: SMKNCCRALISFFLVHNEELRSG*RWMLPL
Trigger: TAGTGGCAACATCCAACGGCACCCAGATCGCAGTTC...TTCATTGTGTACGAGGAAGAATGAAATGAGGGCTCTGCAGCAGTTCTTCATGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CCA 90 bp TCTTCCTCGTACACAATGAATCACGTTGGGATTTCATTCCGGGGCTATGTACACTCTTTCGAGGTGTGGTaGATAAATGCAGTGGTCCCG +
Preference number: 4 (lower is better)
Translates to: SSSYTMNHVGISFRGYVHSFEVW*INAVVP
Trigger: CGGGACCACTGCATTTATCCACCACACCTCGAAAGA...GTGTACATAGCCCCGGAATGAAATCCCAACGTGATTCATTGTGTACGAGGAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084727.11
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CCA 90 bp GCCCTCATTTCATTCTTCCTCGTACACAATGAATCACGTTGGGATTTCATTCCGTATCTGGGTCAATTGTaGCATCCCCAGTGTGCAGCC +
Preference number: 4 (lower is better)
Translates to: ALISFFLVHNESRWDFIPYLGQL*HPQCAA
Trigger: GGCTGCACACTGGGGATGCCACAATTGACCCAGATA...CGGAATGAAATCCCAACGTGATTCATTGTGTACGAGGAAGAATGAAATGAGGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CCA 90 bp CTGTGTTCAGACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTGCCATGTGGCTGTCCGTTTGTGCATaGCCAGTGTGGAAATCTGTT +
Preference number: 4 (lower is better)
Translates to: LCSDPADLMGGFQEFAMWLSVCA*PVWKSV
Trigger: AACAGATTTCCACACTGGCCATGCACAAACGGACAG...CCACATGGCAAATTCCTGAAATCCACCCATAAGATCAGCAGGGTCTGAACACAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CCA 90 bp GCGCATCTTGACTGTGTTCAGACCCTGCTGATCTTATGGGTGGATTTCAGGAATCTGTCCGTTTGTGCATaGCCAGTGTGGAAATCTGTT +
Preference number: 4 (lower is better)
Translates to: AHLDCVQTLLILWVDFRNLSVCA*PVWKSV
Trigger: AACAGATTTCCACACTGGCCATGCACAAACGGACAG...ATTCCTGAAATCCACCCATAAGATCAGCAGGGTCTGAACACAGTCAAGATGCGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CCA 90 bp AATGTGTCCAGTGCTTCAGGAATGGAACTTCTGCTCTGCCGGGCAGGGCTTCAGGTAACATATGTGATCTaGGACCCTTTAAGAACATCA +
Preference number: 4 (lower is better)
Translates to: NVSSASGMELLLCRAGLQVTYVI*DPLRTS
Trigger: TGATGTTCTTAAAGGGTCCCAGATCACATATGTTAC...CTGAAGCCCTGCCCGGCAGAGCAGAAGTTCCATTCCTGAAGCACTGGACACATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CCA 90 bp TTAAAAGCGCATCTTGACTGTGTTCAGACCCTGCTGATCTTATGGGTGGATTTCCGATCTGGGTGCCGTTaGATGTTGCCACTAAGGTCA +
Preference number: 4 (lower is better)
Translates to: LKAHLDCVQTLLILWVDFRSGCR*MLPLRS
Trigger: TGACCTTAGTGGCAACATCCAACGGCACCCAGATCG...GAAATCCACCCATAAGATCAGCAGGGTCTGAACACAGTCAAGATGCGCTTTTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CCA 90 bp TCATTCTTCCTCGTACACAATGAATCACGTTGGGATTTCATTCCGGGGCTATGTCGATCTGGGTGCCGTTaGATGTTGCCACTAAGGTCA +
Preference number: 4 (lower is better)
Translates to: SFFLVHNESRWDFIPGLCRSGCR*MLPLRS
Trigger: TGACCTTAGTGGCAACATCCAACGGCACCCAGATCG...ACATAGCCCCGGAATGAAATCCCAACGTGATTCATTGTGTACGAGGAAGAATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CCA 90 bp GCGCATCTTGACTGTGTTCAGACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTAATCATCCAACCCTaGCGTCTCCCCTTGTTGGAT +
Preference number: 4 (lower is better)
Translates to: AHLDCVQTLLILWVDFRNLIIQP*RLPLLD
Trigger: ATCCAACAAGGGGAGACGCCAGGGTTGGATGATTAA...ATTCCTGAAATCCACCCATAAGATCAGCAGGGTCTGAACACAGTCAAGATGCGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp TGTGTTCAGACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTGCCATGTGGTACTGTCCCATCAGCCTaGATTGCCAAGATGGTATCA +
Preference number: 4 (lower is better)
Translates to: CVQTLLILWVDFRNLPCGTVPSA*IAKMVS
Trigger: TGATACCATCTTGGCAATTCAGGCTGATGGGACAGT...ACCACATGGCAAATTCCTGAAATCCACCCATAAGATCAGCAGGGTCTGAACACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp TCTTCCTCGTACACAATGAATCACGTTGGGATTTCATTCCGGGGCTATGTACACACTGTCCCATCAGCCTaGATTGCCAAGATGGTATCA +
Preference number: 4 (lower is better)
Translates to: SSSYTMNHVGISFRGYVHTVPSA*IAKMVS
Trigger: TGATACCATCTTGGCAATTCAGGCTGATGGGACAGT...GTGTACATAGCCCCGGAATGAAATCCCAACGTGATTCATTGTGTACGAGGAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp TGTGTTCAGACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTGCCATGTGGTCTCCTGTATGGGTTCTaGTGTGCTTCTGTAGATCTC +
Preference number: 4 (lower is better)
Translates to: CVQTLLILWVDFRNLPCGLLYGF*CASVDL
Trigger: GAGATCTACAGAAGCACATCAGAACCCATACAGGAG...ACCACATGGCAAATTCCTGAAATCCACCCATAAGATCAGCAGGGTCTGAACACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp TCTTCCTCGTACACAATGAATCACGTTGGGATTTCATTCCGGGGCTATGTACACCTCCTGTATGGGTTCTaGTGTGCTTCTGTAGATCTC +
Preference number: 4 (lower is better)
Translates to: SSSYTMNHVGISFRGYVHLLYGF*CASVDL
Trigger: GAGATCTACAGAAGCACATCAGAACCCATACAGGAG...GTGTACATAGCCCCGGAATGAAATCCCAACGTGATTCATTGTGTACGAGGAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp TTCAGGGATTCTGCCGCCAGAGATGAAAGGCTCCTCCTCCTGTTTTATTGCTCTCACTTTTCTGATATTTaGTGTGGTAAAGGACCGACC +
Preference number: 4 (lower is better)
Translates to: FRDSAARDERLLLLFYCSHFSDI*CGKGPT
Trigger: GGTCGGTCCTTTACCACATCAAATATCAGAAAAGTG...AGAGCAATAAAACAGGAGGAGGAGCCTTTCATCTCTGGCGGCAGAATCCCTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp GTTAGTCTCACATTTATGTTCTCCTCCTGCATCAGGACTTTAATGCTGGGATTAAGAACATCATCACCTTaGCCTGGGGGAGGCTCGAAG +
Preference number: 4 (lower is better)
Translates to: VSLTFMFSSCIRTLMLGLRTSSP*PGGGSK
Trigger: CTTCGAGCCTCCCCCAGGTCAAGGTGATGATGTTCT...TAATCCCAGCATTAAAGTCCTGATGCAGGAGGAGAACATAAATGTGAGACTAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
CDS-3UTR TCA 90 bp CTCATTTCATTCTTCCTCGTACACAATGAATCACGTTGGGATTTCATTCCGGGGATGAGTGTGACTTGTTaGCTCAGCCCAGACTGGGTT +
Preference number: 4 (lower is better)
Translates to: LISFFLVHNESRWDFIPGMSVTC*LSPDWV
Trigger: AACCCAGTCTGGGCTGAGTCAACAAGTCACACTCAT...CCCCGGAATGAAATCCCAACGTGATTCATTGTGTACGAGGAAGAATGAAATGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp CTGTGTTCAGACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTGCCATGTGGTTGAGTCCCATCCTGTaGTATGAGTGTGACTTGTTG +
Preference number: 4 (lower is better)
Translates to: LCSDPADLMGGFQEFAMWLSPIL*YECDLL
Trigger: CAACAAGTCACACTCATATCACAGGATGGGACTCAA...CCACATGGCAAATTCCTGAAATCCACCCATAAGATCAGCAGGGTCTGAACACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp GGCTTGCATCCTTTATTCTGTGATGGCTTTGGAGTTATGATTGTTTCACATGTAGAGATGACTGCATCGTaGGTGGGGACCGTGATGGGT +
Preference number: 4 (lower is better)
Translates to: GLHPLFCDGFGVMIVSHVEMTAS*VGTVMG
Trigger: ACCCATCACGGTCCCCACTCACGATGCAGTCATCTC...TACATGTGAAACAATCATAACTCCAAAGCCATCACAGAATAAAGGATGCAAGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp TCATTCTTCCTCGTACACAATGAATCACGTTGGGATTTCATTCCGGGGCTATGTAGAATGTGTTCCTGCTaGGGAGATGACTGCATCGTG +
Preference number: 4 (lower is better)
Translates to: SFFLVHNESRWDFIPGLCRMCSC*GDDCIV
Trigger: CACGATGCAGTCATCTCCTCAGCAGGAACACATTCT...ACATAGCCCCGGAATGAAATCCCAACGTGATTCATTGTGTACGAGGAAGAATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp GCGCATCTTGACTGTGTTCAGACCCTGCTGATCTTATGGGTGGATTTCAGGAATACCTTTGCTGCGTACTaGTCCAAAGCACTAATGGTA +
Preference number: 4 (lower is better)
Translates to: AHLDCVQTLLILWVDFRNTFAAY*SKALMV
Trigger: TACCATTAGTGCTTTGGAGCAGTACGCAGCAAAGGT...ATTCCTGAAATCCACCCATAAGATCAGCAGGGTCTGAACACAGTCAAGATGCGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp CTGTGTTCAGACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTGCCATGTGGAATGGATACCTTTGCTaGGTACTGCTCCAAAGCACT +
Preference number: 4 (lower is better)
Translates to: LCSDPADLMGGFQEFAMWNGYLC*VLLQST
Trigger: AGTGCTTTGGAGCAGTACGCAGCAAAGGTATCCATT...CCACATGGCAAATTCCTGAAATCCACCCATAAGATCAGCAGGGTCTGAACACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp TTCAGGGATTCTGCCGCCAGAGATGAAAGGCTCCTCCTCCTGTTTTATTGCTCTGTATGGGTTCTGATGTaGTTCTGTAGATCTCCTGAA +
Preference number: 4 (lower is better)
Translates to: FRDSAARDERLLLLFYCSVWVLM*FCRSPE
Trigger: TTCAGGAGATCTACAGAAGCACATCAGAACCCATAC...AGAGCAATAAAACAGGAGGAGGAGCCTTTCATCTCTGGCGGCAGAATCCCTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp TTCAGGGATTCTGCCGCCAGAGATGAAAGGCTCCTCCTCCTGTTTTATTGCTCTGTTTTTATAATTAGTTaGGCTGGCAAATGCCCTCCC +
Preference number: 4 (lower is better)
Translates to: FRDSAARDERLLLLFYCSVFIIS*AGKCPP
Trigger: GGGAGGGCATTTGCCAGCGCAACTAATTATAAAAAC...AGAGCAATAAAACAGGAGGAGGAGCCTTTCATCTCTGGCGGCAGAATCCCTGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp GCGCATCTTGACTGTGTTCAGACCCTGCTGATCTTATGGGTGGATTTCAGGAATATCTTGAGCTACAATTaGGACCTGCTGTCCTTCTGT +
Preference number: 4 (lower is better)
Translates to: AHLDCVQTLLILWVDFRNILSYN*DLLSFC
Trigger: ACAGAAGGACAGCAGGTCGCAATTGTAGCTCAAGAT...ATTCCTGAAATCCACCCATAAGATCAGCAGGGTCTGAACACAGTCAAGATGCGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp TGTGTTCAGACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTGCCATGTGGTTTTTCTCCACTCTGCTaGGATTTAGGAGTTACCCGA +
Preference number: 4 (lower is better)
Translates to: CVQTLLILWVDFRNLPCGFSPLC*DLGVTR
Trigger: TCGGGTAACTCCTAAATCTCAGCAGAGTGGAGAAAA...ACCACATGGCAAATTCCTGAAATCCACCCATAAGATCAGCAGGGTCTGAACACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp GACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTGCCATGTGGTCAAGAGTATTTTCTCCACTCTGCTaGGATTTAGGAGTTACCCGA +
Preference number: 4 (lower is better)
Translates to: DPADLMGGFQEFAMWSRVFSPLC*DLGVTR
Trigger: TCGGGTAACTCCTAAATCTCAGCAGAGTGGAGAAAA...TACTCTTGACCACATGGCAAATTCCTGAAATCCACCCATAAGATCAGCAGGGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp AGCATGAAGAACTGCTGCAGAGCCCTCATTTCATTCTTCCTCGTACACAATGAACTCCTGTATGGGTTCTaGTGTGCTTCTGTAGATCTC +
Preference number: 4 (lower is better)
Translates to: SMKNCCRALISFFLVHNELLYGF*CASVDL
Trigger: GAGATCTACAGAAGCACATCAGAACCCATACAGGAG...TTCATTGTGTACGAGGAAGAATGAAATGAGGGCTCTGCAGCAGTTCTTCATGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp TGTGTTCAGACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTGCCATGTGGTTTGAGTCCCATCCTGTaGTATGAGTGTGACTTGTTG +
Preference number: 4 (lower is better)
Translates to: CVQTLLILWVDFRNLPCGLSPIL*YECDLL
Trigger: CAACAAGTCACACTCATATCACAGGATGGGACTCAA...ACCACATGGCAAATTCCTGAAATCCACCCATAAGATCAGCAGGGTCTGAACACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp GACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTGCCATGTGGTCAAGAGTACAGCTTGAGATATGTTaGCATGTTGAGTCCCATCCT +
Preference number: 4 (lower is better)
Translates to: DPADLMGGFQEFAMWSRVQLEIC*HVESHP
Trigger: AGGATGGGACTCAACATGTCAACATATCTCAAGCTG...TACTCTTGACCACATGGCAAATTCCTGAAATCCACCCATAAGATCAGCAGGGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp GCTGAAGGCTTGCATCCTTTATTCTGTGATGGCTTTGGAGTTATGATTGTTTCACCTGTGTTACCATGGTaGTGGTGTTGCCAATGGCCT +
Preference number: 4 (lower is better)
Translates to: AEGLHPLFCDGFGVMIVSPVLPW*WCCQWP
Trigger: AGGCCATTGGCAACACCATCACCATGGTAACACAGG...TGAAACAATCATAACTCCAAAGCCATCACAGAATAAAGGATGCAAGCCTTCAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp TGGCTTTGGAGTTATGATTGTTTCACATGTAGAACCTTCAGCACATTAGATACAGAGATGACTGCATCGTaGGTGGGGACCGTGATGGGT +
Preference number: 4 (lower is better)
Translates to: WLWSYDCFTCRTFSTLDTEMTAS*VGTVMG
Trigger: ACCCATCACGGTCCCCACTCACGATGCAGTCATCTC...TGTATCTAATGTGCTGAAGGTTCTACATGTGAAACAATCATAACTCCAAAGCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp AATCACGTTGGGATTTCATTCCGGGGCTATGTACACAAAAGTGTCAAGAAGAAAAACGCTGCCAGATCTTaGGCTACAATTGCGACCTGC +
Preference number: 4 (lower is better)
Translates to: NHVGISFRGYVHKSVKKKNAARS*ATIATC
Trigger: GCAGGTCGCAATTGTAGCTCAAGATCTGGCAGCGTT...TTTCTTCTTGACACTTTTGTGTACATAGCCCCGGAATGAAATCCCAACGTGATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp TGTGTTCAGACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTGCCATGTGGTAATGGATACCTTTGCTaGGTACTGCTCCAAAGCACT +
Preference number: 4 (lower is better)
Translates to: CVQTLLILWVDFRNLPCGNGYLC*VLLQST
Trigger: AGTGCTTTGGAGCAGTACGCAGCAAAGGTATCCATT...ACCACATGGCAAATTCCTGAAATCCACCCATAAGATCAGCAGGGTCTGAACACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp GCGCATCTTGACTGTGTTCAGACCCTGCTGATCTTATGGGTGGATTTCAGGAATCACATCCAGGTTCTGTaGAGTAATAAGGTCTTTCTC +
Preference number: 4 (lower is better)
Translates to: AHLDCVQTLLILWVDFRNHIQVL*SNKVFL
Trigger: GAGAAAGACCTTATTACTGCACAGAACCTGGATGTG...ATTCCTGAAATCCACCCATAAGATCAGCAGGGTCTGAACACAGTCAAGATGCGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp GGCTTGCATCCTTTATTCTGTGATGGCTTTGGAGTTATGATTGTTTCACATGTAAGTTGCGCTGGCAAATaGCCTCCCACATCCAGGTTC +
Preference number: 4 (lower is better)
Translates to: GLHPLFCDGFGVMIVSHVSCAGK*PPTSRF
Trigger: GAACCTGGATGTGGGAGGGCATTTGCCAGCGCAACT...TACATGTGAAACAATCATAACTCCAAAGCCATCACAGAATAAAGGATGCAAGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp CTGTGTTCAGACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTGCCATGTGGGTTTTTATAATTAGTTaGGCTGGCAAATGCCCTCCC +
Preference number: 4 (lower is better)
Translates to: LCSDPADLMGGFQEFAMWVFIIS*AGKCPP
Trigger: GGGAGGGCATTTGCCAGCGCAACTAATTATAAAAAC...CCACATGGCAAATTCCTGAAATCCACCCATAAGATCAGCAGGGTCTGAACACAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp AATCACGTTGGGATTTCATTCCGGGGCTATGTACACAAAAGTGTCAAGAAGAAATGGGCTGTCCGTTTGTaGATGGCCAGTGTGGAAATC +
Preference number: 4 (lower is better)
Translates to: NHVGISFRGYVHKSVKKKWAVRL*MASVEI
Trigger: GATTTCCACACTGGCCATGCACAAACGGACAGCCCA...TTTCTTCTTGACACTTTTGTGTACATAGCCCCGGAATGAAATCCCAACGTGATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp GACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTGCCATGTGGTCAAGAGTATGCTGTATGGAACGCTaGCAGATCTTGAGCTACAAT +
Preference number: 4 (lower is better)
Translates to: DPADLMGGFQEFAMWSRVCCMER*QILSYN
Trigger: ATTGTAGCTCAAGATCTGGCAGCGTTCCATACAGCA...TACTCTTGACCACATGGCAAATTCCTGAAATCCACCCATAAGATCAGCAGGGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp TGTGTTCAGACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTGCCATGTGGTTGCTGTATGGAACGCTaGCAGATCTTGAGCTACAAT +
Preference number: 4 (lower is better)
Translates to: CVQTLLILWVDFRNLPCGCCMER*QILSYN
Trigger: ATTGTAGCTCAAGATCTGGCAGCGTTCCATACAGCA...ACCACATGGCAAATTCCTGAAATCCACCCATAAGATCAGCAGGGTCTGAACACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp GCTGAAGGCTTGCATCCTTTATTCTGTGATGGCTTTGGAGTTATGATTGTTTCAGAACTGCGATCTGGGTaGCGTTGGATGTTGCCACTA +
Preference number: 4 (lower is better)
Translates to: AEGLHPLFCDGFGVMIVSELRSG*RWMLPL
Trigger: TAGTGGCAACATCCAACGGCACCCAGATCGCAGTTC...TGAAACAATCATAACTCCAAAGCCATCACAGAATAAAGGATGCAAGCCTTCAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp GCCGCCAGAGATGAAAGGCTCCTCCTCCTGTTTTATTGCTCTGTAATTCCGAGTTTGTTGGATCCTCGATaGTATTCTGATAGCTTCTTC +
Preference number: 4 (lower is better)
Translates to: AARDERLLLLFYCSVIPSLLDPR*YSDSFF
Trigger: GAAGAAGCTATCAGAATAGCATCGAGGATCCAACAA...ACTCGGAATTACAGAGCAATAAAACAGGAGGAGGAGCCTTTCATCTCTGGCGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CCA 90 bp GCTGAAGGCTTGCATCCTTTATTCTGTGATGGCTTTGGAGTTATGATTGTTTCATATCTGGGTCAATTGTaGCATCCCCAGTGTGCAGCC +
Preference number: 4 (lower is better)
Translates to: AEGLHPLFCDGFGVMIVSYLGQL*HPQCAA
Trigger: GGCTGCACACTGGGGATGCCACAATTGACCCAGATA...TGAAACAATCATAACTCCAAAGCCATCACAGAATAAAGGATGCAAGCCTTCAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CCA 90 bp GCCCTCATTTCATTCTTCCTCGTACACAATGAATCACGTTGGGATTTCATTCCGGGCCTTTCTCCTGTATaGGTTCTGATGTGCTTCTGT +
Preference number: 4 (lower is better)
Translates to: ALISFFLVHNESRWDFIPGLSPV*VLMCFC
Trigger: ACAGAAGCACATCAGAACCCATACAGGAGAAAGGCC...CGGAATGAAATCCCAACGTGATTCATTGTGTACGAGGAAGAATGAAATGAGGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CCA 90 bp GACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTGCCATGTGGTCAAGAGTATGTGCATGGCCAGTGTaGAAATCTGTTTGTACGTCT +
Preference number: 4 (lower is better)
Translates to: DPADLMGGFQEFAMWSRVCAWPV*KSVCTS
Trigger: AGACGTACAAACAGATTTCCACACTGGCCATGCACA...TACTCTTGACCACATGGCAAATTCCTGAAATCCACCCATAAGATCAGCAGGGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CCA 90 bp AGCATGAAGAACTGCTGCAGAGCCCTCATTTCATTCTTCCTCGTACACAATGAACTGTCCGTTTGTGCATaGCCAGTGTGGAAATCTGTT +
Preference number: 4 (lower is better)
Translates to: SMKNCCRALISFFLVHNELSVCA*PVWKSV
Trigger: AACAGATTTCCACACTGGCCATGCACAAACGGACAG...TTCATTGTGTACGAGGAAGAATGAAATGAGGGCTCTGCAGCAGTTCTTCATGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CCA 90 bp GAAGAAAATGTTCTCTACTCTTGCATAAAAATGTGTCCAGTGCTTCAGGAATGGGGCTCTGTGTCGTTGTaGGCTGTCCGTTTGTGCATG +
Preference number: 4 (lower is better)
Translates to: EENVLYSCIKMCPVLQEWGSVSL*AVRLCM
Trigger: CATGCACAAACGGACAGCCCACAACGACACAGAGCC...CCATTCCTGAAGCACTGGACACATTTTTATGCAAGAGTAGAGAACATTTTCTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CCA 90 bp GCAGAGCCCTCATTTCATTCTTCCTCGTACACAATGAATCACGTTGGGATTTCATTAATCATCCAACCCTaGCGTCTCCCCTTGTTGGAT +
Preference number: 4 (lower is better)
Translates to: AEPSFHSSSYTMNHVGISLIIQP*RLPLLD
Trigger: ATCCAACAAGGGGAGACGCCAGGGTTGGATGATTAA...TGAAATCCCAACGTGATTCATTGTGTACGAGGAAGAATGAAATGAGGGCTCTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp GAAGAAAATGTTCTCTACTCTTGCATAAAAATGTGTCCAGTGCTTCAGGAATGGCACAGGGTAACATGTTaGGCCTCCATTCCTCCTCCA +
Preference number: 4 (lower is better)
Translates to: EENVLYSCIKMCPVLQEWHRVTC*ASIPPP
Trigger: TGGAGGAGGAATGGAGGCTCAACATGTTACCCTGTG...CCATTCCTGAAGCACTGGACACATTTTTATGCAAGAGTAGAGAACATTTTCTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp ATGAAGAACTGCTGCAGAGCCCTCATTTCATTCTTCCTCGTACACAATGAATCAACTGTCCCATCAGCCTaGATTGCCAAGATGGTATCA +
Preference number: 4 (lower is better)
Translates to: MKNCCRALISFFLVHNESTVPSA*IAKMVS
Trigger: TGATACCATCTTGGCAATTCAGGCTGATGGGACAGT...TGATTCATTGTGTACGAGGAAGAATGAAATGAGGGCTCTGCAGCAGTTCTTCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp AGCATGAAGAACTGCTGCAGAGCCCTCATTTCATTCTTCCTCGTACACAATGAATTTTCTCCACTCTGCTaGGATTTAGGAGTTACCCGA +
Preference number: 4 (lower is better)
Translates to: SMKNCCRALISFFLVHNEFSPLC*DLGVTR
Trigger: TCGGGTAACTCCTAAATCTCAGCAGAGTGGAGAAAA...TTCATTGTGTACGAGGAAGAATGAAATGAGGGCTCTGCAGCAGTTCTTCATGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp AGCATGAAGAACTGCTGCAGAGCCCTCATTTCATTCTTCCTCGTACACAATGAATTGAGTCCCATCCTGTaGTATGAGTGTGACTTGTTG +
Preference number: 4 (lower is better)
Translates to: SMKNCCRALISFFLVHNELSPIL*YECDLL
Trigger: CAACAAGTCACACTCATATCACAGGATGGGACTCAA...TTCATTGTGTACGAGGAAGAATGAAATGAGGGCTCTGCAGCAGTTCTTCATGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp GCAGAGCCCTCATTTCATTCTTCCTCGTACACAATGAATCACGTTGGGATTTCAAATGGATACCTTTGCTaGGTACTGCTCCAAAGCACT +
Preference number: 4 (lower is better)
Translates to: AEPSFHSSSYTMNHVGISNGYLC*VLLQST
Trigger: AGTGCTTTGGAGCAGTACGCAGCAAAGGTATCCATT...TGAAATCCCAACGTGATTCATTGTGTACGAGGAAGAATGAAATGAGGGCTCTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp GACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTGCCATGTGGTCAAGAGTAGTATGGGTTCTGATGTaGTTCTGTAGATCTCCTGAA +
Preference number: 4 (lower is better)
Translates to: DPADLMGGFQEFAMWSRVVWVLM*FCRSPE
Trigger: TTCAGGAGATCTACAGAAGCACATCAGAACCCATAC...TACTCTTGACCACATGGCAAATTCCTGAAATCCACCCATAAGATCAGCAGGGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp TGTGTTCAGACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTGCCATGTGGTGTTTTTATAATTAGTTaGGCTGGCAAATGCCCTCCC +
Preference number: 4 (lower is better)
Translates to: CVQTLLILWVDFRNLPCGVFIIS*AGKCPP
Trigger: GGGAGGGCATTTGCCAGCGCAACTAATTATAAAAAC...ACCACATGGCAAATTCCTGAAATCCACCCATAAGATCAGCAGGGTCTGAACACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp GAAGAAAATGTTCTCTACTCTTGCATAAAAATGTGTCCAGTGCTTCAGGAATGGTGGGCTGTCCGTTTGTaGATGGCCAGTGTGGAAATC +
Preference number: 4 (lower is better)
Translates to: EENVLYSCIKMCPVLQEWWAVRL*MASVEI
Trigger: GATTTCCACACTGGCCATGCACAAACGGACAGCCCA...CCATTCCTGAAGCACTGGACACATTTTTATGCAAGAGTAGAGAACATTTTCTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CCA 90 bp AATCACGTTGGGATTTCATTCCGGGGCTATGTACACAAAAGTGTCAAGAAGAAAGATGGTATCAGACTGTaGGACTTGCACTGCATGGTG +
Preference number: 4 (lower is better)
Translates to: NHVGISFRGYVHKSVKKKDGIRL*DLHCMV
Trigger: CACCATGCAGTGCAAGTCCCACAGTCTGATACCATC...TTTCTTCTTGACACTTTTGTGTACATAGCCCCGGAATGAAATCCCAACGTGATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CCA 90 bp GTTAGTCTCACATTTATGTTCTCCTCCTGCATCAGGACTTTAATGCTGGGATTAGATGGTATCAGACTGTaGGACTTGCACTGCATGGTG +
Preference number: 4 (lower is better)
Translates to: VSLTFMFSSCIRTLMLGLDGIRL*DLHCMV
Trigger: CACCATGCAGTGCAAGTCCCACAGTCTGATACCATC...TAATCCCAGCATTAAAGTCCTGATGCAGGAGGAGAACATAAATGTGAGACTAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
CDS-3UTR CCA 90 bp AGCATGAAGAACTGCTGCAGAGCCCTCATTTCATTCTTCCTCGTACACAATGAATGTGCATGGCCAGTGTaGAAATCTGTTTGTACGTCT +
Preference number: 4 (lower is better)
Translates to: SMKNCCRALISFFLVHNECAWPV*KSVCTS
Trigger: AGACGTACAAACAGATTTCCACACTGGCCATGCACA...TTCATTGTGTACGAGGAAGAATGAAATGAGGGCTCTGCAGCAGTTCTTCATGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
3UTR CAA 72 bp ACAATCCAGACATTAACTGGAGGGACAGCTGAAGGCTaGCATCCTTTATTCTGTGATGGCTTTGGAGTTATG +
Preference number: 4 (lower is better)
Translates to: TIQTLTGGTAEG*HPLFCDGFGVM
Trigger: CATAACTCCAAAGCCATCACAGAATAAAGGATGCAAGCCTTCAGCTGTCCCTCCAGTTAATGTCTGGATTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp GCTGAAGGCTTGCATCCTTTATTCTGTGATGGCTTTGGAGTTATGATTGTTTCACTGTGGGACTTGCACTaGATGGTGGATATAAGCTGT +
Preference number: 4 (lower is better)
Translates to: AEGLHPLFCDGFGVMIVSLWDLH*MVDISC
Trigger: ACAGCTTATATCCACCATGCAGTGCAAGTCCCACAG...TGAAACAATCATAACTCCAAAGCCATCACAGAATAAAGGATGCAAGCCTTCAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp TGTGTTCAGACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTGCCATGTGGTTTGTTGGATCCTCGATaGTATTCTGATAGCTTCTTC +
Preference number: 4 (lower is better)
Translates to: CVQTLLILWVDFRNLPCGLLDPR*YSDSFF
Trigger: GAAGAAGCTATCAGAATAGCATCGAGGATCCAACAA...ACCACATGGCAAATTCCTGAAATCCACCCATAAGATCAGCAGGGTCTGAACACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CCA 90 bp GCTGAAGGCTTGCATCCTTTATTCTGTGATGGCTTTGGAGTTATGATTGTTTCAGGCCTTTCTCCTGTATaGGTTCTGATGTGCTTCTGT +
Preference number: 4 (lower is better)
Translates to: AEGLHPLFCDGFGVMIVSGLSPV*VLMCFC
Trigger: ACAGAAGCACATCAGAACCCATACAGGAGAAAGGCC...TGAAACAATCATAACTCCAAAGCCATCACAGAATAAAGGATGCAAGCCTTCAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp ATGAAGAACTGCTGCAGAGCCCTCATTTCATTCTTCCTCGTACACAATGAATCAGTATGGGTTCTGATGTaGTTCTGTAGATCTCCTGAA +
Preference number: 4 (lower is better)
Translates to: MKNCCRALISFFLVHNESVWVLM*FCRSPE
Trigger: TTCAGGAGATCTACAGAAGCACATCAGAACCCATAC...TGATTCATTGTGTACGAGGAAGAATGAAATGAGGGCTCTGCAGCAGTTCTTCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp TTGCATCCTTTATTCTGTGATGGCTTTGGAGTTATGATTGTTTCACATGTAGAATCGAAGAAGGCTTCCTaGTCCTCCTCAATGGGCTCT +
Preference number: 4 (lower is better)
Translates to: LHPLFCDGFGVMIVSHVESKKAS*SSSMGS
Trigger: AGAGCCCATTGAGGAGGAGCAGGAAGCCTTCTTCGA...TTCTACATGTGAAACAATCATAACTCCAAAGCCATCACAGAATAAAGGATGCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CCA 90 bp GCTGAAGGCTTGCATCCTTTATTCTGTGATGGCTTTGGAGTTATGATTGTTTCACCTGAATTGCCAAGATaGTATCAGACTGTGGGACTT +
Preference number: 4 (lower is better)
Translates to: AEGLHPLFCDGFGVMIVSPELPR*YQTVGL
Trigger: AAGTCCCACAGTCTGATACCATCTTGGCAATTCAGG...TGAAACAATCATAACTCCAAAGCCATCACAGAATAAAGGATGCAAGCCTTCAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CCA 90 bp GAAGAAAATGTTCTCTACTCTTGCATAAAAATGTGTCCAGTGCTTCAGGAATGGGGCCTTTCTCCTGTATaGGTTCTGATGTGCTTCTGT +
Preference number: 4 (lower is better)
Translates to: EENVLYSCIKMCPVLQEWGLSPV*VLMCFC
Trigger: ACAGAAGCACATCAGAACCCATACAGGAGAAAGGCC...CCATTCCTGAAGCACTGGACACATTTTTATGCAAGAGTAGAGAACATTTTCTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CCA 90 bp GGCTTGCATCCTTTATTCTGTGATGGCTTTGGAGTTATGATTGTTTCACATGTATTAATCATCCAACCCTaGCGTCTCCCCTTGTTGGAT +
Preference number: 4 (lower is better)
Translates to: GLHPLFCDGFGVMIVSHVLIIQP*RLPLLD
Trigger: ATCCAACAAGGGGAGACGCCAGGGTTGGATGATTAA...TACATGTGAAACAATCATAACTCCAAAGCCATCACAGAATAAAGGATGCAAGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp AATAATCAGCATTTTAGCTTGAAGAAGTGTTATATAACAGGGATGGGGCTCTATGAACCATCTTCCAGCTaGATGACCTGGCCATCAATG +
Preference number: 4 (lower is better)
Translates to: NNQHFSLKKCYITGMGLYEPSSS*MTWPSM
Trigger: CATTGATGGCCAGGTCATTCAGCTGGAAGATGGTTC...ATAGAGCCCCATCCCTGTTATATAACACTTCTTCAAGCTAAAATGCTGATTATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp GCTGAAGGCTTGCATCCTTTATTCTGTGATGGCTTTGGAGTTATGATTGTTTCACACTTTTCTGATATTTaGTGTGGTAAAGGACCGACC +
Preference number: 4 (lower is better)
Translates to: AEGLHPLFCDGFGVMIVSHFSDI*CGKGPT
Trigger: GGTCGGTCCTTTACCACATCAAATATCAGAAAAGTG...TGAAACAATCATAACTCCAAAGCCATCACAGAATAAAGGATGCAAGCCTTCAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp AATAATCAGCATTTTAGCTTGAAGAAGTGTTATATAACAGGGATGGGGCTCTATAGAATGTGTTCCTGCTaGGGAGATGACTGCATCGTG +
Preference number: 4 (lower is better)
Translates to: NNQHFSLKKCYITGMGLYRMCSC*GDDCIV
Trigger: CACGATGCAGTCATCTCCTCAGCAGGAACACATTCT...ATAGAGCCCCATCCCTGTTATATAACACTTCTTCAAGCTAAAATGCTGATTATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp GCTGAAGGCTTGCATCCTTTATTCTGTGATGGCTTTGGAGTTATGATTGTTTCAGTATGGGTTCTGATGTaGTTCTGTAGATCTCCTGAA +
Preference number: 4 (lower is better)
Translates to: AEGLHPLFCDGFGVMIVSVWVLM*FCRSPE
Trigger: TTCAGGAGATCTACAGAAGCACATCAGAACCCATAC...TGAAACAATCATAACTCCAAAGCCATCACAGAATAAAGGATGCAAGCCTTCAGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp GCTGAAGGCTTGCATCCTTTATTCTGTGATGGCTTTGGAGTTATGATTGTTTCACACATCCAGGTTCTGTaGAGTAATAAGGTCTTTCTC +
Preference number: 4 (lower is better)
Translates to: AEGLHPLFCDGFGVMIVSHIQVL*SNKVFL
Trigger: GAGAAAGACCTTATTACTGCACAGAACCTGGATGTG...TGAAACAATCATAACTCCAAAGCCATCACAGAATAAAGGATGCAAGCCTTCAGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CCA 90 bp GAAGAAAATGTTCTCTACTCTTGCATAAAAATGTGTCCAGTGCTTCAGGAATGGCCTGAATTGCCAAGATaGTATCAGACTGTGGGACTT +
Preference number: 4 (lower is better)
Translates to: EENVLYSCIKMCPVLQEWPELPR*YQTVGL
Trigger: AAGTCCCACAGTCTGATACCATCTTGGCAATTCAGG...CCATTCCTGAAGCACTGGACACATTTTTATGCAAGAGTAGAGAACATTTTCTTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CCA 90 bp TGGCTTTGGAGTTATGATTGTTTCACATGTAGAACCTTCAGCACATTAGATACACTGTCCGTTTGTGCATaGCCAGTGTGGAAATCTGTT +
Preference number: 4 (lower is better)
Translates to: WLWSYDCFTCRTFSTLDTLSVCA*PVWKSV
Trigger: AACAGATTTCCACACTGGCCATGCACAAACGGACAG...TGTATCTAATGTGCTGAAGGTTCTACATGTGAAACAATCATAACTCCAAAGCCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CCA 90 bp TGGCTTTGGAGTTATGATTGTTTCACATGTAGAACCTTCAGCACATTAGATACATTAATCATCCAACCCTaGCGTCTCCCCTTGTTGGAT +
Preference number: 4 (lower is better)
Translates to: WLWSYDCFTCRTFSTLDTLIIQP*RLPLLD
Trigger: ATCCAACAAGGGGAGACGCCAGGGTTGGATGATTAA...TGTATCTAATGTGCTGAAGGTTCTACATGTGAAACAATCATAACTCCAAAGCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp TTGCATCCTTTATTCTGTGATGGCTTTGGAGTTATGATTGTTTCACATGTAGAAACTGTCCCATCAGCCTaGATTGCCAAGATGGTATCA +
Preference number: 4 (lower is better)
Translates to: LHPLFCDGFGVMIVSHVETVPSA*IAKMVS
Trigger: TGATACCATCTTGGCAATTCAGGCTGATGGGACAGT...TTCTACATGTGAAACAATCATAACTCCAAAGCCATCACAGAATAAAGGATGCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp TGGCTTTGGAGTTATGATTGTTTCACATGTAGAACCTTCAGCACATTAGATACACAGCTTGAGATATGTTaGCATGTTGAGTCCCATCCT +
Preference number: 4 (lower is better)
Translates to: WLWSYDCFTCRTFSTLDTQLEIC*HVESHP
Trigger: AGGATGGGACTCAACATGTCAACATATCTCAAGCTG...TGTATCTAATGTGCTGAAGGTTCTACATGTGAAACAATCATAACTCCAAAGCCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp TTGCATCCTTTATTCTGTGATGGCTTTGGAGTTATGATTGTTTCACATGTAGAACTGTGGGACTTGCACTaGATGGTGGATATAAGCTGT +
Preference number: 4 (lower is better)
Translates to: LHPLFCDGFGVMIVSHVELWDLH*MVDISC
Trigger: ACAGCTTATATCCACCATGCAGTGCAAGTCCCACAG...TTCTACATGTGAAACAATCATAACTCCAAAGCCATCACAGAATAAAGGATGCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp TGGCTTTGGAGTTATGATTGTTTCACATGTAGAACCTTCAGCACATTAGATACAATCTTGAGCTACAATTaGGACCTGCTGTCCTTCTGT +
Preference number: 4 (lower is better)
Translates to: WLWSYDCFTCRTFSTLDTILSYN*DLLSFC
Trigger: ACAGAAGGACAGCAGGTCGCAATTGTAGCTCAAGAT...TGTATCTAATGTGCTGAAGGTTCTACATGTGAAACAATCATAACTCCAAAGCCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CCA 90 bp TGGCTTTGGAGTTATGATTGTTTCACATGTAGAACCTTCAGCACATTAGATACACCTGAATTGCCAAGATaGTATCAGACTGTGGGACTT +
Preference number: 4 (lower is better)
Translates to: WLWSYDCFTCRTFSTLDTPELPR*YQTVGL
Trigger: AAGTCCCACAGTCTGATACCATCTTGGCAATTCAGG...TGTATCTAATGTGCTGAAGGTTCTACATGTGAAACAATCATAACTCCAAAGCCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CCA 90 bp TGGCTTTGGAGTTATGATTGTTTCACATGTAGAACCTTCAGCACATTAGATACATGTGCATGGCCAGTGTaGAAATCTGTTTGTACGTCT +
Preference number: 4 (lower is better)
Translates to: WLWSYDCFTCRTFSTLDTCAWPV*KSVCTS
Trigger: AGACGTACAAACAGATTTCCACACTGGCCATGCACA...TGTATCTAATGTGCTGAAGGTTCTACATGTGAAACAATCATAACTCCAAAGCCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CCA 90 bp ATGAAGAACTGCTGCAGAGCCCTCATTTCATTCTTCCTCGTACACAATGAATCAGTAACATATGTGATCTaGGACCCTTTAAGAACATCA +
Preference number: 4 (lower is better)
Translates to: MKNCCRALISFFLVHNESVTYVI*DPLRTS
Trigger: TGATGTTCTTAAAGGGTCCCAGATCACATATGTTAC...TGATTCATTGTGTACGAGGAAGAATGAAATGAGGGCTCTGCAGCAGTTCTTCAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp TTGCATCCTTTATTCTGTGATGGCTTTGGAGTTATGATTGTTTCACATGTAGAACAGCTTGAGATATGTTaGCATGTTGAGTCCCATCCT +
Preference number: 4 (lower is better)
Translates to: LHPLFCDGFGVMIVSHVEQLEIC*HVESHP
Trigger: AGGATGGGACTCAACATGTCAACATATCTCAAGCTG...TTCTACATGTGAAACAATCATAACTCCAAAGCCATCACAGAATAAAGGATGCAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp AATAATCAGCATTTTAGCTTGAAGAAGTGTTATATAACAGGGATGGGGCTCTATAATGGATACCTTTGCTaGGTACTGCTCCAAAGCACT +
Preference number: 4 (lower is better)
Translates to: NNQHFSLKKCYITGMGLYNGYLC*VLLQST
Trigger: AGTGCTTTGGAGCAGTACGCAGCAAAGGTATCCATT...ATAGAGCCCCATCCCTGTTATATAACACTTCTTCAAGCTAAAATGCTGATTATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000211798.2
CDS-3UTR CCA 90 bp GCTGAAGGCTTGCATCCTTTATTCTGTGATGGCTTTGGAGTTATGATTGTTTCAGTAACATATGTGATCTaGGACCCTTTAAGAACATCA +
Preference number: 4 (lower is better)
Translates to: AEGLHPLFCDGFGVMIVSVTYVI*DPLRTS
Trigger: TGATGTTCTTAAAGGGTCCCAGATCACATATGTTAC...TGAAACAATCATAACTCCAAAGCCATCACAGAATAAAGGATGCAAGCCTTCAGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR TCA 90 bp AATAATCAGCATTTTAGCTTGAAGAAGTGTTATATAACAGGGATGGGGCTCTATCACTTTTCTGATATTTaGTGTGGTAAAGGACCGACC +
Preference number: 4 (lower is better)
Translates to: NNQHFSLKKCYITGMGLYHFSDI*CGKGPT
Trigger: GGTCGGTCCTTTACCACATCAAATATCAGAAAAGTG...ATAGAGCCCCATCCCTGTTATATAACACTTCTTCAAGCTAAAATGCTGATTATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000211798.2
CDS-3UTR GCA 90 bp AATAATCAGCATTTTAGCTTGAAGAAGTGTTATATAACAGGGATGGGGCTCTATCACATCCAGGTTCTGTaGAGTAATAAGGTCTTTCTC +
Preference number: 4 (lower is better)
Translates to: NNQHFSLKKCYITGMGLYHIQVL*SNKVFL
Trigger: GAGAAAGACCTTATTACTGCACAGAACCTGGATGTG...ATAGAGCCCCATCCCTGTTATATAACACTTCTTCAAGCTAAAATGCTGATTATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000211798.2
CDS-3UTR CCA 90 bp GAAGAAAATGTTCTCTACTCTTGCATAAAAATGTGTCCAGTGCTTCAGGAATGGGTAACATATGTGATCTaGGACCCTTTAAGAACATCA +
Preference number: 4 (lower is better)
Translates to: EENVLYSCIKMCPVLQEWVTYVI*DPLRTS
Trigger: TGATGTTCTTAAAGGGTCCCAGATCACATATGTTAC...CCATTCCTGAAGCACTGGACACATTTTTATGCAAGAGTAGAGAACATTTTCTTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS CCA 90 bp CTTGACCTGGGGGAGGCTCGAAGAAGGCTTCCTGCTCCTCCTCAATaGGCTCTGTGTCGTTGTGGGCTGTCCGTTTGTGCATGGCCAGTG +
Preference number: 5 (lower is better)
Translates to: LDLGEARRRLPAPPQ*ALCRCGLSVCAWPV
Trigger: CACTGGCCATGCACAAACGGACAGCCCACAACGACACAGAGCCCATTGAGGAGGAGCAGGAAGCCTTCTTCGAGCCTCCCCCAGGTCAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp CAGTGCTTCAGGAATGGAACTTCTGCTCTGCCGGGCAGGGCTTCAGGGATTCTGATGGGCTCTGTGTCGTaGTGGGCTGTCCGTTTGTGC +
Preference number: 5 (lower is better)
Translates to: QCFRNGTSALPGRASGILMGSVS*WAVRLC
Trigger: GCACAAACGGACAGCCCACAACGACACAGAGCCCAT...CAGAATCCCTGAAGCCCTGCCCGGCAGAGCAGAAGTTCCATTCCTGAAGCACTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp GGCAGGGCTTCAGGGATTCTGCCGCCAGAGATGAAAGGCTCCTCCTCCTGTTTTATGGGCTCTGTGTCGTaGTGGGCTGTCCGTTTGTGC +
Preference number: 5 (lower is better)
Translates to: GRASGILPPEMKGSSSCFMGSVS*WAVRLC
Trigger: GCACAAACGGACAGCCCACAACGACACAGAGCCCAT...AAAACAGGAGGAGGAGCCTTTCATCTCTGGCGGCAGAATCCCTGAAGCCCTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp AGTGCTTCAGGAATGGAACTTCTGCTCTGCCGGGCAGGGCTTCAGGGATTCTGCGGGTGCCGTTGGATGTaGCCACTAAGGTCAGAGGTC +
Preference number: 5 (lower is better)
Translates to: SASGMELLLCRAGLQGFCGCRWM*PLRSEV
Trigger: GACCTCTGACCTTAGTGGCAACATCCAACGGCACCC...GCAGAATCCCTGAAGCCCTGCCCGGCAGAGCAGAAGTTCCATTCCTGAAGCACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS TCA 90 bp TTCTGTGCCCTCCGCGGTAACCATAGCAACAGAATGTGTTCCTGCTaGGGAGATGACTGCATCGTGAGTGGGGACCGTGATGGGTGTGCC +
Preference number: 5 (lower is better)
Translates to: FCALRGNHSNRMCSC*GDDCIVSGDRDGCA
Trigger: GGCACACCCATCACGGTCCCCACTCACGATGCAGTCATCTCCTCAGCAGGAACACATTCTGTTGCTATGGTTACCGCGGAGGGCACAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS GCA 90 bp GGCATCCCCAGTGTGCAGCCCTGCCACTGTCCCATCAGCCTGAATTaGCAAGATGGTATCAGACTGTGGGACTTGCACTGCATGGTGGAT +
Preference number: 5 (lower is better)
Translates to: GIPSVQPCHCPISLN*QDGIRLWDLHCMVD
Trigger: ATCCACCATGCAGTGCAAGTCCCACAGTCTGATACCATCTTGGCAATTCAGGCTGATGGGACAGTGGCAGGGCTGCACACTGGGGATGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS TCA 90 bp ATTGTGGCATCCCCAGTGTGCAGCCCTGCCACTGTCCCATCAGCCTaGATTGCCAAGATGGTATCAGACTGTGGGACTTGCACTGCATGG +
Preference number: 5 (lower is better)
Translates to: IVASPVCSPATVPSA*IAKMVSDCGTCTAW
Trigger: CCATGCAGTGCAAGTCCCACAGTCTGATACCATCTTGGCAATTCAGGCTGATGGGACAGTGGCAGGGCTGCACACTGGGGATGCCACAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp TGTCCAGTGCTTCAGGAATGGAACTTCTGCTCTGCCGGGCAGGGCTTCAGGGATACCATGGTGATGGTGTaGCCAATGGCCTGCATGTCA +
Preference number: 5 (lower is better)
Translates to: CPVLQEWNFCSAGQGFRDTMVMV*PMACMS
Trigger: TGACATGCAGGCCATTGGCAACACCATCACCATGGT...ATCCCTGAAGCCCTGCCCGGCAGAGCAGAAGTTCCATTCCTGAAGCACTGGACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp TGTCCAGTGCTTCAGGAATGGAACTTCTGCTCTGCCGGGCAGGGCTTCAGGGATGAACGCTGCCAGATCTaGAGCTACAATTGCGACCTG +
Preference number: 5 (lower is better)
Translates to: CPVLQEWNFCSAGQGFRDERCQI*SYNCDL
Trigger: CAGGTCGCAATTGTAGCTCAAGATCTGGCAGCGTTC...ATCCCTGAAGCCCTGCCCGGCAGAGCAGAAGTTCCATTCCTGAAGCACTGGACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS GCA 90 bp TCTTTCGAGGTGTGGTGGATAAATGCAGTGGTCCCGTCTTCTAGCTaGACTGCTTGCCCATCCTCCAGCCGCAAACTGTCCCCTGTACTT +
Preference number: 5 (lower is better)
Translates to: SFEVWWINAVVPSSS*TACPSSSRKLSPVL
Trigger: AAGTACAGGGGACAGTTTGCGGCTGGAGGATGGGCAAGCAGTGCAGCTAGAAGACGGGACCACTGCATTTATCCACCACACCTCGAAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084727.11
CDS GCA 90 bp TGCTCCTCCTCAATGGGCTCTGTGTCGTTGTGGGCTGTCCGTTTGTaGATGGCCAGTGTGGAAATCTGTTTGTACGTCTTCCCACAGTGG +
Preference number: 5 (lower is better)
Translates to: CSSSMGSVSLWAVRL*MASVEICLYVFPQW
Trigger: CCACTGTGGGAAGACGTACAAACAGATTTCCACACTGGCCATGCACAAACGGACAGCCCACAACGACACAGAGCCCATTGAGGAGGAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS GCA 90 bp GTGTGGTGGATAAATGCAGTGGTCCCGTCTTCTAGCTGCACTGCTTaGCCATCCTCCAGCCGCAAACTGTCCCTACTTTTAGGTATGGGG +
Preference number: 5 (lower is better)
Translates to: VWWINAVVPSSSCTA*PSSSRKLSLLLGMG
Trigger: CCCCATACCTAAAAGTAGGGACAGTTTGCGGCTGGAGGATGGGCAAGCAGTGCAGCTAGAAGACGGGACCACTGCATTTATCCACCACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS TCA 90 bp ACCATAGCAACAGAATGTGTTCCTGCTGAGGAGATGACTGCATCGTaGGTGGGGACCGTGATGGGTGTGCCATCCTGTGTTACCATGGTG +
Preference number: 5 (lower is better)
Translates to: TIATECVPAEEMTAS*VGTVMGVPSCVTMV
Trigger: CACCATGGTAACACAGGATGGCACACCCATCACGGTCCCCACTCACGATGCAGTCATCTCCTCAGCAGGAACACATTCTGTTGCTATGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS GCA 90 bp GTGTGGTGGATAAATGCAGTGGTCCCGTCTTCTAGCTGCACTGCTTaGCCATCCTCCAGCCGCAAACTGTCCCCTGTACTTTTAGGTATG +
Preference number: 5 (lower is better)
Translates to: VWWINAVVPSSSCTA*PSSSRKLSPVLLGM
Trigger: CATACCTAAAAGTACAGGGGACAGTTTGCGGCTGGAGGATGGGCAAGCAGTGCAGCTAGAAGACGGGACCACTGCATTTATCCACCACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084727.11
CDS CCA 90 bp CCTCCTCAATGGGCTCTGTGTCGTTGTGGGCTGTCCGTTTGTGCATaGCCAGTGTGGAAATCTGTTTGTACGTCTTCCCACAGTGGTTAC +
Preference number: 5 (lower is better)
Translates to: PPQWALCRCGLSVCA*PVWKSVCTSSHSGY
Trigger: GTAACCACTGTGGGAAGACGTACAAACAGATTTCCACACTGGCCATGCACAAACGGACAGCCCACAACGACACAGAGCCCATTGAGGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS CCA 90 bp TCGAAGAAGGCTTCCTGCTCCTCCTCAATGGGCTCTGTGTCGTTGTaGGCTGTCCGTTTGTGCATGGCCAGTGTGGAAATCTGTTTGTAC +
Preference number: 5 (lower is better)
Translates to: SKKASCSSSMGSVSL*AVRLCMASVEICLY
Trigger: GTACAAACAGATTTCCACACTGGCCATGCACAAACGGACAGCCCACAACGACACAGAGCCCATTGAGGAGGAGCAGGAAGCCTTCTTCGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp AGTGCTTCAGGAATGGAACTTCTGCTCTGCCGGGCAGGGCTTCAGGGATTCTGCAGTGTGGAAATCTGTTaGTACGTCTTCCCACAGTGG +
Preference number: 5 (lower is better)
Translates to: SASGMELLLCRAGLQGFCSVEIC*YVFPQW
Trigger: CCACTGTGGGAAGACGTACAAACAGATTTCCACACT...GCAGAATCCCTGAAGCCCTGCCCGGCAGAGCAGAAGTTCCATTCCTGAAGCACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp AGTGCTTCAGGAATGGAACTTCTGCTCTGCCGGGCAGGGCTTCAGGGATTCTGCGGCCTGCATGTCAGCTaGAGATATGTTGACATGTTG +
Preference number: 5 (lower is better)
Translates to: SASGMELLLCRAGLQGFCGLHVS*RYVDML
Trigger: CAACATGTCAACATATCTCAAGCTGACATGCAGGCC...GCAGAATCCCTGAAGCCCTGCCCGGCAGAGCAGAAGTTCCATTCCTGAAGCACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp GGCAGGGCTTCAGGGATTCTGCCGCCAGAGATGAAAGGCTCCTCCTCCTGTTTTGGCCTGCATGTCAGCTaGAGATATGTTGACATGTTG +
Preference number: 5 (lower is better)
Translates to: GRASGILPPEMKGSSSCFGLHVS*RYVDML
Trigger: CAACATGTCAACATATCTCAAGCTGACATGCAGGCC...AAAACAGGAGGAGGAGCCTTTCATCTCTGGCGGCAGAATCCCTGAAGCCCTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS GCA 90 bp ACTAATGGTATCTGGGTCAATTGTGGCATCCCCAGTGTGCAGCCCTaGCACTGTCCCATCAGCCTGAATTGCCAAGATGGTATCAGACTG +
Preference number: 5 (lower is better)
Translates to: TNGIWVNCGIPSVQP*HCPISLNCQDGIRL
Trigger: CAGTCTGATACCATCTTGGCAATTCAGGCTGATGGGACAGTGGCAGGGCTGCACACTGGGGATGCCACAATTGACCCAGATACCATTAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS GCA 90 bp TCTTTCGAGGTGTGGTGGATAAATGCAGTGGTCCCGTCTTCTAGCTaGACTGCTTGCCCATCCTCCAGCCGCAAACTGTCCCTACTTTTA +
Preference number: 5 (lower is better)
Translates to: SFEVWWINAVVPSSS*TACPSSSRKLSLLL
Trigger: TAAAAGTAGGGACAGTTTGCGGCTGGAGGATGGGCAAGCAGTGCAGCTAGAAGACGGGACCACTGCATTTATCCACCACACCTCGAAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp GCGCATCTTGACTGTGTTCAGACCCTGCTGATCTTATGGGTGGATTTCAGGAATGGGTGCCGTTGGATGTaGCCACTAAGGTCAGAGGTC +
Preference number: 5 (lower is better)
Translates to: AHLDCVQTLLILWVDFRNGCRWM*PLRSEV
Trigger: GACCTCTGACCTTAGTGGCAACATCCAACGGCACCC...ATTCCTGAAATCCACCCATAAGATCAGCAGGGTCTGAACACAGTCAAGATGCGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp CTGTGTTCAGACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTGCCATGTGGGCGATCTGGGTGCCGTaGGATGTTGCCACTAAGGTC +
Preference number: 5 (lower is better)
Translates to: LCSDPADLMGGFQEFAMWAIWVP*DVATKV
Trigger: GACCTTAGTGGCAACATCCAACGGCACCCAGATCGC...CCACATGGCAAATTCCTGAAATCCACCCATAAGATCAGCAGGGTCTGAACACAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp GCGCATCTTGACTGTGTTCAGACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTGTGGGCTGTCCGTTaGTGCATGGCCAGTGTGGAA +
Preference number: 5 (lower is better)
Translates to: AHLDCVQTLLILWVDFRNLWAVR*CMASVE
Trigger: TTCCACACTGGCCATGCACAAACGGACAGCCCACAA...ATTCCTGAAATCCACCCATAAGATCAGCAGGGTCTGAACACAGTCAAGATGCGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp AATGTGTCCAGTGCTTCAGGAATGGAACTTCTGCTCTGCCGGGCAGGGCTTCAGGGTTACTGTGGCTACTaGTGTAGATACAATGTCCTC +
Preference number: 5 (lower is better)
Translates to: NVSSASGMELLLCRAGLQGYCGY*CRYNVL
Trigger: GAGGACATTGTATCTACACAAGTAGCCACAGTAACC...CTGAAGCCCTGCCCGGCAGAGCAGAAGTTCCATTCCTGAAGCACTGGACACATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp GCCGCCAGAGATGAAAGGCTCCTCCTCCTGTTTTATTGCTCTGTAATTCCGAGTACCATGGTGATGGTGTaGCCAATGGCCTGCATGTCA +
Preference number: 5 (lower is better)
Translates to: AARDERLLLLFYCSVIPSTMVMV*PMACMS
Trigger: TGACATGCAGGCCATTGGCAACACCATCACCATGGT...ACTCGGAATTACAGAGCAATAAAACAGGAGGAGGAGCCTTTCATCTCTGGCGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp CATGTGGTCAAGAGTAGCATGAAGAACTGCTGCAGAGCCCTCATTTCATTCTTCGCGATCTGGGTGCCGTaGGATGTTGCCACTAAGGTC +
Preference number: 5 (lower is better)
Translates to: HVVKSSMKNCCRALISFFAIWVP*DVATKV
Trigger: GACCTTAGTGGCAACATCCAACGGCACCCAGATCGC...GAAGAATGAAATGAGGGCTCTGCAGCAGTTCTTCATGCTACTCTTGACCACATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS CCA 90 bp TGCCACTGTCCCATCAGCCTGAATTGCCAAGATGGTATCAGACTGTaGGACTTGCACTGCATGGTGGATATAAGCTGTTGTCCCATCTTC +
Preference number: 5 (lower is better)
Translates to: CHCPISLNCQDGIRL*DLHCMVDISCCPIF
Trigger: GAAGATGGGACAACAGCTTATATCCACCATGCAGTGCAAGTCCCACAGTCTGATACCATCTTGGCAATTCAGGCTGATGGGACAGTGGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp AATGTGTCCAGTGCTTCAGGAATGGAACTTCTGCTCTGCCGGGCAGGGCTTCAGTATTCTGTAAACCGTTaGTCACACCCAGGAACTGTA +
Preference number: 5 (lower is better)
Translates to: NVSSASGMELLLCRAGLQYSVNR*SHPGTV
Trigger: TACAGTTCCTGGGTGTGACAAACGGTTTACAGAATA...CTGAAGCCCTGCCCGGCAGAGCAGAAGTTCCATTCCTGAAGCACTGGACACATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp GACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTGCCATGTGGTCAAGAGTATTGTGGGCTGTCCGTTaGTGCATGGCCAGTGTGGAA +
Preference number: 5 (lower is better)
Translates to: DPADLMGGFQEFAMWSRVLWAVR*CMASVE
Trigger: TTCCACACTGGCCATGCACAAACGGACAGCCCACAA...TACTCTTGACCACATGGCAAATTCCTGAAATCCACCCATAAGATCAGCAGGGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp TGTGTTCAGACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTGCCATGTGGTTTGTGGGCTGTCCGTTaGTGCATGGCCAGTGTGGAA +
Preference number: 5 (lower is better)
Translates to: CVQTLLILWVDFRNLPCGLWAVR*CMASVE
Trigger: TTCCACACTGGCCATGCACAAACGGACAGCCCACAA...ACCACATGGCAAATTCCTGAAATCCACCCATAAGATCAGCAGGGTCTGAACACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp CTCATTTCATTCTTCCTCGTACACAATGAATCACGTTGGGATTTCATTCCGGGGATGGGCTCTGTGTCGTaGTGGGCTGTCCGTTTGTGC +
Preference number: 5 (lower is better)
Translates to: LISFFLVHNESRWDFIPGMGSVS*WAVRLC
Trigger: GCACAAACGGACAGCCCACAACGACACAGAGCCCAT...CCCCGGAATGAAATCCCAACGTGATTCATTGTGTACGAGGAAGAATGAAATGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp CTGTGTTCAGACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTGCCATGTGGGAACGCTGCCAGATCTaGAGCTACAATTGCGACCTG +
Preference number: 5 (lower is better)
Translates to: LCSDPADLMGGFQEFAMWERCQI*SYNCDL
Trigger: CAGGTCGCAATTGTAGCTCAAGATCTGGCAGCGTTC...CCACATGGCAAATTCCTGAAATCCACCCATAAGATCAGCAGGGTCTGAACACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp CTCATTTCATTCTTCCTCGTACACAATGAATCACGTTGGGATTTCATTCCGGGGGGGTGCCGTTGGATGTaGCCACTAAGGTCAGAGGTC +
Preference number: 5 (lower is better)
Translates to: LISFFLVHNESRWDFIPGGCRWM*PLRSEV
Trigger: GACCTCTGACCTTAGTGGCAACATCCAACGGCACCC...CCCCGGAATGAAATCCCAACGTGATTCATTGTGTACGAGGAAGAATGAAATGAG
50% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS TCA 90 bp CCACAGCCGTCGTATTTGCACCGAAATGCCTTTTCTCCACTCTGCTaGGATTTAGGAGTTACCCGAGTAGCATGGCCTTGTAAGACAATC +
Preference number: 5 (lower is better)
Translates to: PQPSYLHRNAFSPLC*DLGVTRVAWPCKTI
Trigger: GATTGTCTTACAAGGCCATGCTACTCGGGTAACTCCTAAATCTCAGCAGAGTGGAGAAAAGGCATTTCGGTGCAAATACGACGGCTGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS GCA 90 bp CTTGTTACACCGTCACTGCCATCAATGGATACCTTTGCTGCGTACTaGTCCAAAGCACTAATGGTATCTGGGTCAATTGTGGCATCCCCA +
Preference number: 5 (lower is better)
Translates to: LVTPSLPSMDTFAAY*SKALMVSGSIVASP
Trigger: TGGGGATGCCACAATTGACCCAGATACCATTAGTGCTTTGGAGCAGTACGCAGCAAAGGTATCCATTGATGGCAGTGACGGTGTAACAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp GTTCTCCTCCTGCATCAGGACTTTAATGCTGGGATTACAGGCACAAGCTGCCATAGTGTGGAAATCTGTTaGTACGTCTTCCCACAGTGG +
Preference number: 5 (lower is better)
Translates to: VLLLHQDFNAGITGTSCHSVEIC*YVFPQW
Trigger: CCACTGTGGGAAGACGTACAAACAGATTTCCACACT...ATGGCAGCTTGTGCCTGTAATCCCAGCATTAAAGTCCTGATGCAGGAGGAGAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
CDS-3UTR CAA 90 bp TTCAGGGATTCTGCCGCCAGAGATGAAAGGCTCCTCCTCCTGTTTTATTGCTCTAGTGTGGAAATCTGTTaGTACGTCTTCCCACAGTGG +
Preference number: 5 (lower is better)
Translates to: FRDSAARDERLLLLFYCSSVEIC*YVFPQW
Trigger: CCACTGTGGGAAGACGTACAAACAGATTTCCACACT...AGAGCAATAAAACAGGAGGAGGAGCCTTTCATCTCTGGCGGCAGAATCCCTGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp AGCATGAAGAACTGCTGCAGAGCCCTCATTTCATTCTTCCTCGTACACAATGAATTGTGGGCTGTCCGTTaGTGCATGGCCAGTGTGGAA +
Preference number: 5 (lower is better)
Translates to: SMKNCCRALISFFLVHNELWAVR*CMASVE
Trigger: TTCCACACTGGCCATGCACAAACGGACAGCCCACAA...TTCATTGTGTACGAGGAAGAATGAAATGAGGGCTCTGCAGCAGTTCTTCATGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp ATGAAGAACTGCTGCAGAGCCCTCATTTCATTCTTCCTCGTACACAATGAATCAATGGGCTCTGTGTCGTaGTGGGCTGTCCGTTTGTGC +
Preference number: 5 (lower is better)
Translates to: MKNCCRALISFFLVHNESMGSVS*WAVRLC
Trigger: GCACAAACGGACAGCCCACAACGACACAGAGCCCAT...TGATTCATTGTGTACGAGGAAGAATGAAATGAGGGCTCTGCAGCAGTTCTTCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp TGTGTTCAGACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTGCCATGTGGTACCATGGTGATGGTGTaGCCAATGGCCTGCATGTCA +
Preference number: 5 (lower is better)
Translates to: CVQTLLILWVDFRNLPCGTMVMV*PMACMS
Trigger: TGACATGCAGGCCATTGGCAACACCATCACCATGGT...ACCACATGGCAAATTCCTGAAATCCACCCATAAGATCAGCAGGGTCTGAACACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS GCA 90 bp AGCTGTTGTATAGAGTTTCCCACAGCCGTCGTATTTGCACCGAAATaGCTTTTCTCCACTCTGCTGAGATTTAGGAGTTACCCGAGTAGC +
Preference number: 5 (lower is better)
Translates to: SCCIEFPTAVVFAPK*LFSTLLRFRSYPSS
Trigger: GCTACTCGGGTAACTCCTAAATCTCAGCAGAGTGGAGAAAAGGCATTTCGGTGCAAATACGACGGCTGTGGGAAACTCTATACAACAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp GCGCATCTTGACTGTGTTCAGACCCTGCTGATCTTATGGGTGGATTTCAGGAATATCAGACTGTGGGACTaGCACTGCATGGTGGATATA +
Preference number: 5 (lower is better)
Translates to: AHLDCVQTLLILWVDFRNIRLWD*HCMVDI
Trigger: TATATCCACCATGCAGTGCAAGTCCCACAGTCTGAT...ATTCCTGAAATCCACCCATAAGATCAGCAGGGTCTGAACACAGTCAAGATGCGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp CTCGTACACAATGAATCACGTTGGGATTTCATTCCGGGGCTATGTACACAAAAGTGGTATCTGGGTCAATaGTGGCATCCCCAGTGTGCA +
Preference number: 5 (lower is better)
Translates to: LVHNESRWDFIPGLCTQKWYLGQ*WHPQCA
Trigger: TGCACACTGGGGATGCCACAATTGACCCAGATACCA...CTTTTGTGTACATAGCCCCGGAATGAAATCCCAACGTGATTCATTGTGTACGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp AGCATGAAGAACTGCTGCAGAGCCCTCATTTCATTCTTCCTCGTACACAATGAATGGTATCTGGGTCAATaGTGGCATCCCCAGTGTGCA +
Preference number: 5 (lower is better)
Translates to: SMKNCCRALISFFLVHNEWYLGQ*WHPQCA
Trigger: TGCACACTGGGGATGCCACAATTGACCCAGATACCA...TTCATTGTGTACGAGGAAGAATGAAATGAGGGCTCTGCAGCAGTTCTTCATGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp CTCATTTCATTCTTCCTCGTACACAATGAATCACGTTGGGATTTCATTCCGGGGTGGTATCTGGGTCAATaGTGGCATCCCCAGTGTGCA +
Preference number: 5 (lower is better)
Translates to: LISFFLVHNESRWDFIPGWYLGQ*WHPQCA
Trigger: TGCACACTGGGGATGCCACAATTGACCCAGATACCA...CCCCGGAATGAAATCCCAACGTGATTCATTGTGTACGAGGAAGAATGAAATGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp AGCATGAAGAACTGCTGCAGAGCCCTCATTTCATTCTTCCTCGTACACAATGAAACCATGGTGATGGTGTaGCCAATGGCCTGCATGTCA +
Preference number: 5 (lower is better)
Translates to: SMKNCCRALISFFLVHNETMVMV*PMACMS
Trigger: TGACATGCAGGCCATTGGCAACACCATCACCATGGT...TTCATTGTGTACGAGGAAGAATGAAATGAGGGCTCTGCAGCAGTTCTTCATGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp CTCATTTCATTCTTCCTCGTACACAATGAATCACGTTGGGATTTCATTCCGGGGGAACGCTGCCAGATCTaGAGCTACAATTGCGACCTG +
Preference number: 5 (lower is better)
Translates to: LISFFLVHNESRWDFIPGERCQI*SYNCDL
Trigger: CAGGTCGCAATTGTAGCTCAAGATCTGGCAGCGTTC...CCCCGGAATGAAATCCCAACGTGATTCATTGTGTACGAGGAAGAATGAAATGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp GCAGAGCCCTCATTTCATTCTTCCTCGTACACAATGAATCACGTTGGGATTTCATGGCGTCTCCCCTTGTaGGATCCTCGATGCTATTCT +
Preference number: 5 (lower is better)
Translates to: AEPSFHSSSYTMNHVGISWRLPL*DPRCYS
Trigger: AGAATAGCATCGAGGATCCAACAAGGGGAGACGCCA...TGAAATCCCAACGTGATTCATTGTGTACGAGGAAGAATGAAATGAGGGCTCTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp GACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTGCCATGTGGTCAAGAGTATCCCATCAGCCTGAATaGCCAAGATGGTATCAGACT +
Preference number: 5 (lower is better)
Translates to: DPADLMGGFQEFAMWSRVSHQPE*PRWYQT
Trigger: AGTCTGATACCATCTTGGCAATTCAGGCTGATGGGA...TACTCTTGACCACATGGCAAATTCCTGAAATCCACCCATAAGATCAGCAGGGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp GTTCTCCTCCTGCATCAGGACTTTAATGCTGGGATTACAGGCACAAGCTGCCATTTAATCCATAACCTGTaGCAAATGCTTTCCCACAGC +
Preference number: 5 (lower is better)
Translates to: VLLLHQDFNAGITGTSCHLIHNL*QMLSHS
Trigger: GCTGTGGGAAAGCATTTGCAACAGGTTATGGATTAA...ATGGCAGCTTGTGCCTGTAATCCCAGCATTAAAGTCCTGATGCAGGAGGAGAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
CDS-3UTR CAA 90 bp GCCGCCAGAGATGAAAGGCTCCTCCTCCTGTTTTATTGCTCTGTAATTCCGAGTTATTCTGTAAACCGTTaGTCACACCCAGGAACTGTA +
Preference number: 5 (lower is better)
Translates to: AARDERLLLLFYCSVIPSYSVNR*SHPGTV
Trigger: TACAGTTCCTGGGTGTGACAAACGGTTTACAGAATA...ACTCGGAATTACAGAGCAATAAAACAGGAGGAGGAGCCTTTCATCTCTGGCGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp GAAGAAAATGTTCTCTACTCTTGCATAAAAATGTGTCCAGTGCTTCAGGAATGGGGGTGCCGTTGGATGTaGCCACTAAGGTCAGAGGTC +
Preference number: 5 (lower is better)
Translates to: EENVLYSCIKMCPVLQEWGCRWM*PLRSEV
Trigger: GACCTCTGACCTTAGTGGCAACATCCAACGGCACCC...CCATTCCTGAAGCACTGGACACATTTTTATGCAAGAGTAGAGAACATTTTCTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp ATGAAGAACTGCTGCAGAGCCCTCATTTCATTCTTCCTCGTACACAATGAATCATGGCGTCTCCCCTTGTaGGATCCTCGATGCTATTCT +
Preference number: 5 (lower is better)
Translates to: MKNCCRALISFFLVHNESWRLPL*DPRCYS
Trigger: AGAATAGCATCGAGGATCCAACAAGGGGAGACGCCA...TGATTCATTGTGTACGAGGAAGAATGAAATGAGGGCTCTGCAGCAGTTCTTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp TTAAAAGCGCATCTTGACTGTGTTCAGACCCTGCTGATCTTATGGGTGGATTTCTCCCATCAGCCTGAATaGCCAAGATGGTATCAGACT +
Preference number: 5 (lower is better)
Translates to: LKAHLDCVQTLLILWVDFSHQPE*PRWYQT
Trigger: AGTCTGATACCATCTTGGCAATTCAGGCTGATGGGA...GAAATCCACCCATAAGATCAGCAGGGTCTGAACACAGTCAAGATGCGCTTTTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp GCGCATCTTGACTGTGTTCAGACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTAATCCATAACCTGTaGCAAATGCTTTCCCACAGC +
Preference number: 5 (lower is better)
Translates to: AHLDCVQTLLILWVDFRNLIHNL*QMLSHS
Trigger: GCTGTGGGAAAGCATTTGCAACAGGTTATGGATTAA...ATTCCTGAAATCCACCCATAAGATCAGCAGGGTCTGAACACAGTCAAGATGCGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp AGCATGAAGAACTGCTGCAGAGCCCTCATTTCATTCTTCCTCGTACACAATGAAAGTGTGGAAATCTGTTaGTACGTCTTCCCACAGTGG +
Preference number: 5 (lower is better)
Translates to: SMKNCCRALISFFLVHNESVEIC*YVFPQW
Trigger: CCACTGTGGGAAGACGTACAAACAGATTTCCACACT...TTCATTGTGTACGAGGAAGAATGAAATGAGGGCTCTGCAGCAGTTCTTCATGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp GACCCTGCTGATCTTATGGGTGGATTTCAGGAATTTGCCATGTGGTCAAGAGTAGGTTACTGTGGCTACTaGTGTAGATACAATGTCCTC +
Preference number: 5 (lower is better)
Translates to: DPADLMGGFQEFAMWSRVGYCGY*CRYNVL
Trigger: GAGGACATTGTATCTACACAAGTAGCCACAGTAACC...TACTCTTGACCACATGGCAAATTCCTGAAATCCACCCATAAGATCAGCAGGGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp AGCATGAAGAACTGCTGCAGAGCCCTCATTTCATTCTTCCTCGTACACAATGAAGGCCTGCATGTCAGCTaGAGATATGTTGACATGTTG +
Preference number: 5 (lower is better)
Translates to: SMKNCCRALISFFLVHNEGLHVS*RYVDML
Trigger: CAACATGTCAACATATCTCAAGCTGACATGCAGGCC...TTCATTGTGTACGAGGAAGAATGAAATGAGGGCTCTGCAGCAGTTCTTCATGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp AATCACGTTGGGATTTCATTCCGGGGCTATGTACACAAAAGTGTCAAGAAGAAATGGCGTCTCCCCTTGTaGGATCCTCGATGCTATTCT +
Preference number: 5 (lower is better)
Translates to: NHVGISFRGYVHKSVKKKWRLPL*DPRCYS
Trigger: AGAATAGCATCGAGGATCCAACAAGGGGAGACGCCA...TTTCTTCTTGACACTTTTGTGTACATAGCCCCGGAATGAAATCCCAACGTGATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp GAAGAAAATGTTCTCTACTCTTGCATAAAAATGTGTCCAGTGCTTCAGGAATGGTGGTATCTGGGTCAATaGTGGCATCCCCAGTGTGCA +
Preference number: 5 (lower is better)
Translates to: EENVLYSCIKMCPVLQEWWYLGQ*WHPQCA
Trigger: TGCACACTGGGGATGCCACAATTGACCCAGATACCA...CCATTCCTGAAGCACTGGACACATTTTTATGCAAGAGTAGAGAACATTTTCTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp TCTTCCTCGTACACAATGAATCACGTTGGGATTTCATTCCGGGGCTATGTACACTTAATCCATAACCTGTaGCAAATGCTTTCCCACAGC +
Preference number: 5 (lower is better)
Translates to: SSSYTMNHVGISFRGYVHLIHNL*QMLSHS
Trigger: GCTGTGGGAAAGCATTTGCAACAGGTTATGGATTAA...GTGTACATAGCCCCGGAATGAAATCCCAACGTGATTCATTGTGTACGAGGAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp AGCATGAAGAACTGCTGCAGAGCCCTCATTTCATTCTTCCTCGTACACAATGAAGGTTACTGTGGCTACTaGTGTAGATACAATGTCCTC +
Preference number: 5 (lower is better)
Translates to: SMKNCCRALISFFLVHNEGYCGY*CRYNVL
Trigger: GAGGACATTGTATCTACACAAGTAGCCACAGTAACC...TTCATTGTGTACGAGGAAGAATGAAATGAGGGCTCTGCAGCAGTTCTTCATGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp ATGAAGAACTGCTGCAGAGCCCTCATTTCATTCTTCCTCGTACACAATGAATCAGGCCTGCATGTCAGCTaGAGATATGTTGACATGTTG +
Preference number: 5 (lower is better)
Translates to: MKNCCRALISFFLVHNESGLHVS*RYVDML
Trigger: CAACATGTCAACATATCTCAAGCTGACATGCAGGCC...TGATTCATTGTGTACGAGGAAGAATGAAATGAGGGCTCTGCAGCAGTTCTTCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp AATAATCAGCATTTTAGCTTGAAGAAGTGTTATATAACAGGGATGGGGCTCTATGCGATCTGGGTGCCGTaGGATGTTGCCACTAAGGTC +
Preference number: 5 (lower is better)
Translates to: NNQHFSLKKCYITGMGLYAIWVP*DVATKV
Trigger: GACCTTAGTGGCAACATCCAACGGCACCCAGATCGC...ATAGAGCCCCATCCCTGTTATATAACACTTCTTCAAGCTAAAATGCTGATTATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp GCCCTCATTTCATTCTTCCTCGTACACAATGAATCACGTTGGGATTTCATTCCGTTAATCCATAACCTGTaGCAAATGCTTTCCCACAGC +
Preference number: 5 (lower is better)
Translates to: ALISFFLVHNESRWDFIPLIHNL*QMLSHS
Trigger: GCTGTGGGAAAGCATTTGCAACAGGTTATGGATTAA...CGGAATGAAATCCCAACGTGATTCATTGTGTACGAGGAAGAATGAAATGAGGGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp TTAAAAGCGCATCTTGACTGTGTTCAGACCCTGCTGATCTTATGGGTGGATTTCTATTCTGTAAACCGTTaGTCACACCCAGGAACTGTA +
Preference number: 5 (lower is better)
Translates to: LKAHLDCVQTLLILWVDFYSVNR*SHPGTV
Trigger: TACAGTTCCTGGGTGTGACAAACGGTTTACAGAATA...GAAATCCACCCATAAGATCAGCAGGGTCTGAACACAGTCAAGATGCGCTTTTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp GGCTTGCATCCTTTATTCTGTGATGGCTTTGGAGTTATGATTGTTTCACATGTAATCAGACTGTGGGACTaGCACTGCATGGTGGATATA +
Preference number: 5 (lower is better)
Translates to: GLHPLFCDGFGVMIVSHVIRLWD*HCMVDI
Trigger: TATATCCACCATGCAGTGCAAGTCCCACAGTCTGAT...TACATGTGAAACAATCATAACTCCAAAGCCATCACAGAATAAAGGATGCAAGCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS CCA 90 bp TGTGGAAATCTGTTTGTACGTCTTCCCACAGTGGTTACAGTTGTATaGTTTAGAGTGAGTGTGAACGACATGGTGTTTATACAAACTGGA +
Preference number: 5 (lower is better)
Translates to: CGNLFVRLPTVVTVV*FRVSVNDMVFIQTG
Trigger: TCCAGTTTGTATAAACACCATGTCGTTCACACTCACTCTAAACCATACAACTGTAACCACTGTGGGAAGACGTACAAACAGATTTCCACA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp GAAGAAAATGTTCTCTACTCTTGCATAAAAATGTGTCCAGTGCTTCAGGAATGGGGTTACTGTGGCTACTaGTGTAGATACAATGTCCTC +
Preference number: 5 (lower is better)
Translates to: EENVLYSCIKMCPVLQEWGYCGY*CRYNVL
Trigger: GAGGACATTGTATCTACACAAGTAGCCACAGTAACC...CCATTCCTGAAGCACTGGACACATTTTTATGCAAGAGTAGAGAACATTTTCTTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS-3UTR CAA 90 bp TTGCATCCTTTATTCTGTGATGGCTTTGGAGTTATGATTGTTTCACATGTAGAAATCAGACTGTGGGACTaGCACTGCATGGTGGATATA +
Preference number: 5 (lower is better)
Translates to: LHPLFCDGFGVMIVSHVEIRLWD*HCMVDI
Trigger: TATATCCACCATGCAGTGCAAGTCCCACAGTCTGAT...TTCTACATGTGAAACAATCATAACTCCAAAGCCATCACAGAATAAAGGATGCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS CCA 72 bp GGGGAGGCTCGAAGAAGGCTTCCTGCTCCTCCTCAATaGGCTCTGTGTCGTTGTGGGCTGTCCGTTTGTGCA +
Preference number: 6 (lower is better)
Translates to: GEARRRLPAPPQ*ALCRCGLSVCA
Trigger: TGCACAAACGGACAGCCCACAACGACACAGAGCCCATTGAGGAGGAGCAGGAAGCCTTCTTCGAGCCTCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS GCA 72 bp GAGACGGCTGCTCTCCAAGCTGAACTGCGATCTGGGTaGCGTTGGATGTTGCCACTAAGGTCAGAGGTCTGG +
Preference number: 6 (lower is better)
Translates to: ETAALQAELRSG*RWMLPLRSEVW
Trigger: CCAGACCTCTGACCTTAGTGGCAACATCCAACGGCACCCAGATCGCAGTTCAGCTTGGAGAGCAGCCGTCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS TCA 72 bp TCCCCAGTGTGCAGCCCTGCCACTGTCCCATCAGCCTaGATTGCCAAGATGGTATCAGACTGTGGGACTTGC +
Preference number: 6 (lower is better)
Translates to: SPVCSPATVPSA*IAKMVSDCGTC
Trigger: GCAAGTCCCACAGTCTGATACCATCTTGGCAATTCAGGCTGATGGGACAGTGGCAGGGCTGCACACTGGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS GCA 72 bp GTGTGGTGGATAAATGCAGTGGTCCCGTCTTCTAGCTaGACTGCTTGCCCATCCTCCAGCCGCAAACTGTCC +
Preference number: 6 (lower is better)
Translates to: VWWINAVVPSSS*TACPSSSRKLS
Trigger: GGACAGTTTGCGGCTGGAGGATGGGCAAGCAGTGCAGCTAGAAGACGGGACCACTGCATTTATCCACCACAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084727.11
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS GCA 72 bp ATCTGGGTCAATTGTGGCATCCCCAGTGTGCAGCCCTaGCACTGTCCCATCAGCCTGAATTGCCAAGATGGT +
Preference number: 6 (lower is better)
Translates to: IWVNCGIPSVQP*HCPISLNCQDG
Trigger: ACCATCTTGGCAATTCAGGCTGATGGGACAGTGGCAGGGCTGCACACTGGGGATGCCACAATTGACCCAGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS CCA 72 bp GCTGCTCTCCAAGCTGAACTGCGATCTGGGTGCCGTTaGATGTTGCCACTAAGGTCAGAGGTCTGGTTTCTG +
Preference number: 6 (lower is better)
Translates to: AALQAELRSGCR*MLPLRSEVWFL
Trigger: CAGAAACCAGACCTCTGACCTTAGTGGCAACATCCAACGGCACCCAGATCGCAGTTCAGCTTGGAGAGCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS TCA 72 bp ACAGAATGTGTTCCTGCTGAGGAGATGACTGCATCGTaGGTGGGGACCGTGATGGGTGTGCCATCCTGTGTT +
Preference number: 6 (lower is better)
Translates to: TECVPAEEMTAS*VGTVMGVPSCV
Trigger: AACACAGGATGGCACACCCATCACGGTCCCCACTCACGATGCAGTCATCTCCTCAGCAGGAACACATTCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS GCA 72 bp ATAAATGCAGTGGTCCCGTCTTCTAGCTGCACTGCTTaGCCATCCTCCAGCCGCAAACTGTCCCCTGTACTT +
Preference number: 6 (lower is better)
Translates to: INAVVPSSSCTA*PSSSRKLSPVL
Trigger: AAGTACAGGGGACAGTTTGCGGCTGGAGGATGGGCAAGCAGTGCAGCTAGAAGACGGGACCACTGCATTTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084727.11
CDS CCA 72 bp TGGGCTCTGTGTCGTTGTGGGCTGTCCGTTTGTGCATaGCCAGTGTGGAAATCTGTTTGTACGTCTTCCCAC +
Preference number: 6 (lower is better)
Translates to: WALCRCGLSVCA*PVWKSVCTSSH
Trigger: GTGGGAAGACGTACAAACAGATTTCCACACTGGCCATGCACAAACGGACAGCCCACAACGACACAGAGCCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS CAA 90 bp ACCATCTGCCACGGTTACTGCCTCCGTCAGGCACAGGGTAACATGTaGAGCCTCCATTCCTCCTCCAGGAAATTCTGTCATTCCCTGAGA +
Preference number: 6 (lower is better)
Translates to: TICHGYCLRQAQGNM*SLHSSSRKFCHSLR
Trigger: TCTCAGGGAATGACAGAATTTCCTGGAGGAGGAATGGAGGCTCAACATGTTACCCTGTGCCTGACGGAGGCAGTAACCGTGGCAGATGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS CAA 72 bp TCCTCAATGGGCTCTGTGTCGTTGTGGGCTGTCCGTTaGTGCATGGCCAGTGTGGAAATCTGTTTGTACGTC +
Preference number: 6 (lower is better)
Translates to: SSMGSVSLWAVR*CMASVEICLYV
Trigger: GACGTACAAACAGATTTCCACACTGGCCATGCACAAACGGACAGCCCACAACGACACAGAGCCCATTGAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS TCA 72 bp ATCTCTGAAGATGCTGTATGGAACGCTGCCAGATCTTaGGCTACAATTGCGACCTGCTGTCCTTCTGTGCCC +
Preference number: 6 (lower is better)
Translates to: ISEDAVWNAARS*ATIATCCPSVP
Trigger: GGGCACAGAAGGACAGCAGGTCGCAATTGTAGCTCAAGATCTGGCAGCGTTCCATACAGCATCTTCAGAGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS GCA 72 bp TCAATGGGCTCTGTGTCGTTGTGGGCTGTCCGTTTGTaGATGGCCAGTGTGGAAATCTGTTTGTACGTCTTC +
Preference number: 6 (lower is better)
Translates to: SMGSVSLWAVRL*MASVEICLYVF
Trigger: GAAGACGTACAAACAGATTTCCACACTGGCCATGCACAAACGGACAGCCCACAACGACACAGAGCCCATTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS GCA 72 bp ATAAATGCAGTGGTCCCGTCTTCTAGCTGCACTGCTTaGCCATCCTCCAGCCGCAAACTGTCCCTACTTTTA +
Preference number: 6 (lower is better)
Translates to: INAVVPSSSCTA*PSSSRKLSLLL
Trigger: TAAAAGTAGGGACAGTTTGCGGCTGGAGGATGGGCAAGCAGTGCAGCTAGAAGACGGGACCACTGCATTTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS GCA 72 bp CCGTCACTGCCATCAATGGATACCTTTGCTGCGTACTaGTCCAAAGCACTAATGGTATCTGGGTCAATTGTG +
Preference number: 6 (lower is better)
Translates to: PSLPSMDTFAAY*SKALMVSGSIV
Trigger: CACAATTGACCCAGATACCATTAGTGCTTTGGAGCAGTACGCAGCAAAGGTATCCATTGATGGCAGTGACGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS GCA 72 bp TGTTACACCGTCACTGCCATCAATGGATACCTTTGCTaGGTACTGCTCCAAAGCACTAATGGTATCTGGGTC +
Preference number: 6 (lower is better)
Translates to: CYTVTAINGYLC*VLLQSTNGIWV
Trigger: GACCCAGATACCATTAGTGCTTTGGAGCAGTACGCAGCAAAGGTATCCATTGATGGCAGTGACGGTGTAACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS CAA 72 bp AGCCTGAATTGCCAAGATGGTATCAGACTGTGGGACTaGCACTGCATGGTGGATATAAGCTGTTGTCCCATC +
Preference number: 6 (lower is better)
Translates to: SLNCQDGIRLWD*HCMVDISCCPI
Trigger: GATGGGACAACAGCTTATATCCACCATGCAGTGCAAGTCCCACAGTCTGATACCATCTTGGCAATTCAGGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS TCA 72 bp TCGTATTTGCACCGAAATGCCTTTTCTCCACTCTGCTaGGATTTAGGAGTTACCCGAGTAGCATGGCCTTGT +
Preference number: 6 (lower is better)
Translates to: SYLHRNAFSPLC*DLGVTRVAWPC
Trigger: ACAAGGCCATGCTACTCGGGTAACTCCTAAATCTCAGCAGAGTGGAGAAAAGGCATTTCGGTGCAAATACGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS GCA 72 bp TCTCTCCAATCATTCCTGTACTTGTTACACCGTCACTaGCATCAATGGATACCTTTGCTGCGTACTGCTCCA +
Preference number: 6 (lower is better)
Translates to: SLQSFLYLLHRH*HQWIPLLRTAP
Trigger: TGGAGCAGTACGCAGCAAAGGTATCCATTGATGGCAGTGACGGTGTAACAAGTACAGGAATGATTGGAGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS GCA 72 bp GAGCTGTTGTATAGAGTTTCCCACAGCCGTCGTATTTaGACCGAAATGCCTTTTCTCCACTCTGCTGAGATT +
Preference number: 6 (lower is better)
Translates to: ELLYRVSHSRRI*TEMPFLHSAEI
Trigger: AATCTCAGCAGAGTGGAGAAAAGGCATTTCGGTGCAAATACGACGGCTGTGGGAAACTCTATACAACAGCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS CAA 72 bp TTGTTGACTCAGCCCAGACTGGGTTACTGTGGCTACTaGTGTAGATACAATGTCCTCTCCATCTACACCTGT +
Preference number: 6 (lower is better)
Translates to: LLTQPRLGYCGY*CRYNVLSIYTC
Trigger: ACAGGTGTAGATGGAGAGGACATTGTATCTACACAAGTAGCCACAGTAACCCAGTCTGGGCTGAGTCAACAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS CAA 90 bp GAGTGTGACTTGTTGACTCAGCCCAGACTGGGTTACTGTGGCTACTaGTGTAGATACAATGTCCTCTCCATCTACACCTGTAACATATGT +
Preference number: 6 (lower is better)
Translates to: ECDLLTQPRLGYCGY*CRYNVLSIYTCNIC
Trigger: ACATATGTTACAGGTGTAGATGGAGAGGACATTGTATCTACACAAGTAGCCACAGTAACCCAGTCTGGGCTGAGTCAACAAGTCACACTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS TCA 72 bp AGCTTGAGATATGTTGACATGTTGAGTCCCATCCTGTaGTATGAGTGTGACTTGTTGACTCAGCCCAGACTG +
Preference number: 6 (lower is better)
Translates to: SLRYVDMLSPIL*YECDLLTQPRL
Trigger: CAGTCTGGGCTGAGTCAACAAGTCACACTCATATCACAGGATGGGACTCAACATGTCAACATATCTCAAGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS GCA 72 bp ATAGAGTTTCCCACAGCCGTCGTATTTGCACCGAAATaGCTTTTCTCCACTCTGCTGAGATTTAGGAGTTAC +
Preference number: 6 (lower is better)
Translates to: IEFPTAVVFAPK*LFSTLLRFRSY
Trigger: GTAACTCCTAAATCTCAGCAGAGTGGAGAAAAGGCATTTCGGTGCAAATACGACGGCTGTGGGAAACTCTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS GCA 72 bp CCTCACATGGTTTTTATAATTAGTTGCGCTGGCAAATaGCCTCCCACATCCAGGTTCTGTGCAGTAATAAGG +
Preference number: 6 (lower is better)
Translates to: PHMVFIISCAGK*PPTSRFCAVIR
Trigger: CCTTATTACTGCACAGAACCTGGATGTGGGAGGGCATTTGCCAGCGCAACTAATTATAAAAACCATGTGAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS CCA 72 bp CTGTTTGTACGTCTTCCCACAGTGGTTACAGTTGTATaGTTTAGAGTGAGTGTGAACGACATGGTGTTTATA +
Preference number: 6 (lower is better)
Translates to: LFVRLPTVVTVV*FRVSVNDMVFI
Trigger: TATAAACACCATGTCGTTCACACTCACTCTAAACCATACAACTGTAACCACTGTGGGAAGACGTACAAACAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS CAA 72 bp TTTTCTCTTGCTCATTCTCTCCAATCATTCCTGTACTaGTTACACCGTCACTGCCATCAATGGATACCTTTG +
Preference number: 6 (lower is better)
Translates to: FSLAHSLQSFLY*LHRHCHQWIPL
Trigger: CAAAGGTATCCATTGATGGCAGTGACGGTGTAACAAGTACAGGAATGATTGGAGAGAATGAGCAAGAGAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2
CDS CAA 72 bp TGGTGTTTATACAAACTGGAATATTCTGTAAACCGTTaGTCACACCCAGGAACTGTACAGACATATGGCTTT +
Preference number: 6 (lower is better)
Translates to: WCLYKLEYSVNR*SHPGTVQTYGF
Trigger: AAAGCCATATGTCTGTACAGTTCCTGGGTGTGACAAACGGTTTACAGAATATTCCAGTTTGTATAAACACCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000084727.11
ENSMUST00000169638.4
ENSMUST00000209505.2
ENSMUST00000211798.2