Pregenerated sensors for ZDHHC4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001844Ensembl transcript IDs: ENSMUST00000001900.9, ENSMUST00000159813.8, ENSMUST00000159941.8, ENSMUST00000161915.8, ENSMUST00000162066.8, ENSMUST00000162358.8, ENSMUST00000162941.8
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ATCCGGGGCTCAGCTGATGGGGACCAAGCCACCAGAGGCCAGCGCTaGCACCAGGCCCAGTCGCCTTTATACCATTCATTTGTGGTCTGG | + |
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Preference number: 1 (lower is better) Translates to: IRGSADGDQATRGQR*HQAQSPLYHSFVVW Trigger: CCAGACCACAAATGAATGGTATAAAGGCGACTGGGCCTGGTGCCAGCGCTGGCCTCTGGTGGCTTGGTCCCCATCAGCTGAGCCCCGGAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159813.8 |
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| 3UTR TCA 90 bp | AAGCCCAGTAGGAAGACAATCCTTGGAAATGCCAGGAACAGATGCTaGATAAGAAAGACAGTGTCCACAGCCTGGAAATGCCCCACGTCA | + |
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Preference number: 1 (lower is better) Translates to: KPSRKTILGNARNRC*IRKTVSTAWKCPTS Trigger: TGACGTGGGGCATTTCCAGGCTGTGGACACTGTCTTTCTTATTCAGCATCTGTTCCTGGCATTTCCAAGGATTGTCTTCCTACTGGGCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159813.8 |
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| 3UTR-3UTR TCA 90 bp | CAGCCAGGTACAGAGCAAAGCACAAGTAGCCAGCCAGGAGCATGCTCAAAACGAGCGTCAGGAGGTAAATaGGGAAGTACCTGGTGTTCC | + |
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Preference number: 2 (lower is better) Translates to: QPGTEQSTSSQPGACSKRASGGK*GSTWCS Trigger: GGAACACCAGGTACTTCCTCATTTACCTCCTGACGC...TCGTTTTGAGCATGCTCCTGGCTGGCTACTTGTGCTTTGCTCTGTACCTGGCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159813.8 |
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| 3UTR-3UTR CCA 90 bp | ACTGTATTTAAAAGGCAGGGCACTTCCGCTCTATTTCTCCTTTTTCTTGTAACTACCAGAGGCCAGCGCTaGCACCAGGCCCAGTCGCCT | + |
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Preference number: 2 (lower is better) Translates to: TVFKRQGTSALFLLFLVTTRGQR*HQAQSP Trigger: AGGCGACTGGGCCTGGTGCCAGCGCTGGCCTCTGGT...AGTTACAAGAAAAAGGAGAAATAGAGCGGAAGTGCCCTGCCTTTTAAATACAGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000159813.8 |
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| 3UTR-3UTR CCA 90 bp | ACAAATAGGTGTGCACTGTATTTAAAAGGCAGGGCACTTCCGCTCTATTTCTCCCATTTGTGGTCTGGTTaGTGGCAGCCAGGTACAGAG | + |
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Preference number: 2 (lower is better) Translates to: TNRCALYLKGRALPLYFSHLWSG*WQPGTE Trigger: CTCTGTACCTGGCTGCCACCAACCAGACCACAAATG...GGAGAAATAGAGCGGAAGTGCCCTGCCTTTTAAATACAGTGCACACCTATTTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159813.8 |
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| 3UTR-3UTR CCA 90 bp | ACTGTATTTAAAAGGCAGGGCACTTCCGCTCTATTTCTCCTTTTTCTTGTAACTCAGTCACGGTGGCTATaGTGGCAGCAGAAGCCGTCA | + |
|
Preference number: 2 (lower is better) Translates to: TVFKRQGTSALFLLFLVTQSRWL*WQQKPS Trigger: TGACGGCTTCTGCTGCCACCATAGCCACCGTGACTG...AGTTACAAGAAAAAGGAGAAATAGAGCGGAAGTGCCCTGCCTTTTAAATACAGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000159813.8 |
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| 3UTR-3UTR TCA 90 bp | TGTGCACTGTATTTAAAAGGCAGGGCACTTCCGCTCTATTTCTCCTTTTTCTTGGCCAGGAACAGATGCTaGATAAGAAAGACAGTGTCC | + |
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Preference number: 2 (lower is better) Translates to: CALYLKGRALPLYFSFFLARNRC*IRKTVS Trigger: GGACACTGTCTTTCTTATTCAGCATCTGTTCCTGGC...CAAGAAAAAGGAGAAATAGAGCGGAAGTGCCCTGCCTTTTAAATACAGTGCACA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000159813.8 |
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| 3UTR CCA 72 bp | CTGTCACTAGGCGGAGCAGAAAGGCAGCAGTCACGGTaGCTATGGTGGCAGCAGAAGCCGTCAGCGTCAGGA | + |
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Preference number: 3 (lower is better) Translates to: LSLGGAERQQSR*LWWQQKPSASG Trigger: TCCTGACGCTGACGGCTTCTGCTGCCACCATAGCCACCGTGACTGCTGCCTTTCTGCTCCGCCTAGTGACAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159813.8 |
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| 3UTR CCA 72 bp | CTAGGCGGAGCAGAAAGGCAGCAGTCACGGTGGCTATaGTGGCAGCAGAAGCCGTCAGCGTCAGGAGGTAAA | + |
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Preference number: 3 (lower is better) Translates to: LGGAERQQSRWL*WQQKPSASGGK Trigger: TTTACCTCCTGACGCTGACGGCTTCTGCTGCCACCATAGCCACCGTGACTGCTGCCTTTCTGCTCCGCCTAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159813.8 |
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| 3UTR TCA 72 bp | TGGTGGCAGCAGAAGCCGTCAGCGTCAGGAGGTAAATaGGGAAGTACCTGGTGTTCCAGGCCCCGATGCAGT | + |
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Preference number: 3 (lower is better) Translates to: WWQQKPSASGGK*GSTWCSRPRCS Trigger: ACTGCATCGGGGCCTGGAACACCAGGTACTTCCTCATTTACCTCCTGACGCTGACGGCTTCTGCTGCCACCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159813.8 |
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| 3UTR CCA 72 bp | TCAGCTGATGGGGACCAAGCCACCAGAGGCCAGCGCTaGCACCAGGCCCAGTCGCCTTTATACCATTCATTT | + |
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Preference number: 3 (lower is better) Translates to: SADGDQATRGQR*HQAQSPLYHSF Trigger: AAATGAATGGTATAAAGGCGACTGGGCCTGGTGCCAGCGCTGGCCTCTGGTGGCTTGGTCCCCATCAGCTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159813.8 |
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| 3UTR TCA 72 bp | AAGATCTCTCGAAGGTTGCTCCTAAACCCGTGGGAGTaGATGTTCTGGTGGATCCGGGGCTCAGCTGATGGG | + |
|
Preference number: 3 (lower is better) Translates to: KISRRLLLNPWE*MFWWIRGSADG Trigger: CCCATCAGCTGAGCCCCGGATCCACCAGAACATTCACTCCCACGGGTTTAGGAGCAACCTTCGAGAGATCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159813.8 |
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| 3UTR TCA 72 bp | AGCACAAGTAGCCAGCCAGGAGCATGCTCAAAACGATaGCAAAGCCCAGTAGGAAGACAATCCTTGGAAATG | + |
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Preference number: 3 (lower is better) Translates to: STSSQPGACSKR*QSPVGRQSLEM Trigger: CATTTCCAAGGATTGTCTTCCTACTGGGCTTTGTCATCGTTTTGAGCATGCTCCTGGCTGGCTACTTGTGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159813.8 |
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| 3UTR TCA 72 bp | AGGAAGACAATCCTTGGAAATGCCAGGAACAGATGCTaGATAAGAAAGACAGTGTCCACAGCCTGGAAATGC | + |
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Preference number: 3 (lower is better) Translates to: RKTILGNARNRC*IRKTVSTAWKC Trigger: GCATTTCCAGGCTGTGGACACTGTCTTTCTTATTCAGCATCTGTTCCTGGCATTTCCAAGGATTGTCTTCCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159813.8 |
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| CDS-3UTR GCA 90 bp | GGTTGGTGGCAGCCAGGTACAGAGCAAAGCACAAGTAGCCAGCCAGGAGCATGCCCTTGCAAGAGCAGGTaGAAGACGATGAAGGTGGGG | + |
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Preference number: 4 (lower is better) Translates to: GWWQPGTEQSTSSQPGACPCKSR*KTMKVG Trigger: CCCCACCTTCATCGTCTTGCACCTGCTCTTGCAAGG...GCATGCTCCTGGCTGGCTACTTGTGCTTTGCTCTGTACCTGGCTGCCACCAACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159813.8 |
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| CDS-3UTR CCA 90 bp | ACTAGGCGGAGCAGAAAGGCAGCAGTCACGGTGGCTATGGTGGCAGCAGAAGCCACTTACTGCAGTGCTTaGAGCGGGCTGGTTTCCTTA | + |
|
Preference number: 4 (lower is better) Translates to: TRRSRKAAVTVAMVAAEATYCSA*SGLVSL Trigger: TAAGGAAACCAGCCCGCTCCAAGCACTGCAGTAAGT...GGCTTCTGCTGCCACCATAGCCACCGTGACTGCTGCCTTTCTGCTCCGCCTAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159813.8 |
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| CDS-3UTR GCA 90 bp | CCACGTCATCTAGGTAAGTTTCCTGGTAGAGATCAGACACTGTCACTAGGCGGACCTGGAGCACACCTGTaGTCCTCCAAGGACCACGGC | + |
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Preference number: 4 (lower is better) Translates to: PRHLGKFPGRDQTLSLGGPGAHL*SSKDHG Trigger: GCCGTGGTCCTTGGAGGAGCACAGGTGTGCTCCAGG...TCCGCCTAGTGACAGTGTCTGATCTCTACCAGGAAACTTACCTAGATGACGTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159813.8 |
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| CDS-3UTR TCA 90 bp | ACTAGGCGGAGCAGAAAGGCAGCAGTCACGGTGGCTATGGTGGCAGCAGAAGCCAACGCTGGCTTTTTGTaGAGATGCAGATCAGGACAA | + |
|
Preference number: 4 (lower is better) Translates to: TRRSRKAAVTVAMVAAEANAGFL*RCRSGQ Trigger: TTGTCCTGATCTGCATCTTCACAAAAAGCCAGCGTT...GGCTTCTGCTGCCACCATAGCCACCGTGACTGCTGCCTTTCTGCTCCGCCTAGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000159813.8 |
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| CDS-3UTR GCA 90 bp | CCACGTCATCTAGGTAAGTTTCCTGGTAGAGATCAGACACTGTCACTAGGCGGAGTGCACTTACTGCAGTaGTTGGAGCGGGCTGGTTTC | + |
|
Preference number: 4 (lower is better) Translates to: PRHLGKFPGRDQTLSLGGVHLLQ*LERAGF Trigger: GAAACCAGCCCGCTCCAAGCACTGCAGTAAGTGCAC...TCCGCCTAGTGACAGTGTCTGATCTCTACCAGGAAACTTACCTAGATGACGTGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159813.8 |
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| CDS-3UTR TCA 90 bp | CAGAAAGGCAGCAGTCACGGTGGCTATGGTGGCAGCAGAAGCCGTCAGCGTCAGGACTTGCAGAAGAAATaGTTCGTTTGCTTTAGTGAT | + |
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Preference number: 4 (lower is better) Translates to: QKGSSHGGYGGSRSRQRQDLQKK*FVCFSD Trigger: ATCACTAAAGCAAACGAATCATTTCTTCTGCAAGTC...CTGACGCTGACGGCTTCTGCTGCCACCATAGCCACCGTGACTGCTGCCTTTCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159813.8 |
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| CDS-3UTR CCA 90 bp | ACTGTATTTAAAAGGCAGGGCACTTCCGCTCTATTTCTCCTTTTTCTTGTAACTGTCTGCACGGCCCTCTaGAGGCACTGCGGGATTACC | + |
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Preference number: 4 (lower is better) Translates to: TVFKRQGTSALFLLFLVTVCTAL*RHCGIT Trigger: GGTAATCCCGCAGTGCCTCCAGAGGGCCGTGCAGAC...AGTTACAAGAAAAAGGAGAAATAGAGCGGAAGTGCCCTGCCTTTTAAATACAGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000159813.8 |
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| CDS GCA 90 bp | CACGGCCCTCTGGAGGCACTGCGGGATTACCCTGGAGCACACCTGTaGTCCTCCAAGGACCACGGCCTTCAAACGCTGGCTTTTTGTGAA | + |
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Preference number: 5 (lower is better) Translates to: HGPLEALRDYPGAHL*SSKDHGLQTLAFCE Trigger: TTCACAAAAAGCCAGCGTTTGAAGGCCGTGGTCCTTGGAGGAGCACAGGTGTGCTCCAGGGTAATCCCGCAGTGCCTCCAGAGGGCCGTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 7 transcripts: ENSMUST00000001900.9 ENSMUST00000159813.8 ENSMUST00000159941.8 ENSMUST00000161915.8 ENSMUST00000162066.8 ENSMUST00000162358.8 ENSMUST00000162941.8 |
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| CDS GCA 90 bp | CCGGTGCACACAGCGGTCACACAACCTGCAGTGCACTTACTGCAGTaGTTGGAGCGGGCTGGTTTCCTTAAATCGCAAGTGGGGCACCTC | + |
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Preference number: 5 (lower is better) Translates to: PVHTAVTQPAVHLLQ*LERAGFLKSQVGHL Trigger: GAGGTGCCCCACTTGCGATTTAAGGAAACCAGCCCGCTCCAAGCACTGCAGTAAGTGCACTGCAGGTTGTGTGACCGCTGTGTGCACCGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159813.8 |
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| CDS-3UTR CAA 90 bp | GTTGGTGGCAGCCAGGTACAGAGCAAAGCACAAGTAGCCAGCCAGGAGCATGCTGTGATGGTACCAGGATaGGCGGCACAAGTCAGGGTG | + |
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Preference number: 5 (lower is better) Translates to: VGGSQVQSKAQVASQEHAVMVPG*AAQVRV Trigger: CACCCTGACTTGTGCCGCCAATCCTGGTACCATCAC...AGCATGCTCCTGGCTGGCTACTTGTGCTTTGCTCTGTACCTGGCTGCCACCAAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159813.8 |
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| CDS CCA 90 bp | TGCACACAGCGGTCACACAACCTGCAGTGCACTTACTGCAGTGCTTaGAGCGGGCTGGTTTCCTTAAATCGCAAGTGGGGCACCTCGAGT | + |
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Preference number: 5 (lower is better) Translates to: CTQRSHNLQCTYCSA*SGLVSLNRKWGTSS Trigger: ACTCGAGGTGCCCCACTTGCGATTTAAGGAAACCAGCCCGCTCCAAGCACTGCAGTAAGTGCACTGCAGGTTGTGTGACCGCTGTGTGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159813.8 |
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| CDS TCA 90 bp | TGTATTCTGCATACACTAGCCCTTGCAAGAGCAGGTGCAAGACGATaGAGGTGGGGTGGCGTGTGTGGAAGAGCTGATGAAGAAGCGTCT | + |
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Preference number: 5 (lower is better) Translates to: CILHTLALARAGARR*RWGGVCGRADEEAS Trigger: AGACGCTTCTTCATCAGCTCTTCCACACACGCCACCCCACCTTCATCGTCTTGCACCTGCTCTTGCAAGGGCTAGTGTATGCAGAATACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENSMUST00000001900.9 ENSMUST00000159813.8 ENSMUST00000159941.8 ENSMUST00000161915.8 ENSMUST00000162066.8 ENSMUST00000162358.8 ENSMUST00000162941.8 |
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| CDS-3UTR CAA 90 bp | CGTCATCTAGGTAAGTTTCCTGGTAGAGATCAGACACTGTCACTAGGCGGAGCACACTTACTGCAGTGCTaGGAGCGGGCTGGTTTCCTT | + |
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Preference number: 5 (lower is better) Translates to: RHLGKFPGRDQTLSLGGAHLLQC*ERAGFL Trigger: AAGGAAACCAGCCCGCTCCAAGCACTGCAGTAAGTG...TGCTCCGCCTAGTGACAGTGTCTGATCTCTACCAGGAAACTTACCTAGATGACG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159813.8 |
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| CDS CCA 90 bp | CTGGAGCACACCTGTGCTCCTCCAAGGACCACGGCCTTCAAACGCTaGCTTTTTGTGAAGATGCAGATCAGGACAACACAAATCAATAAG | + |
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Preference number: 5 (lower is better) Translates to: LEHTCAPPRTTAFKR*LFVKMQIRTTQINK Trigger: CTTATTGATTTGTGTTGTCCTGATCTGCATCTTCACAAAAAGCCAGCGTTTGAAGGCCGTGGTCCTTGGAGGAGCACAGGTGTGCTCCAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 7 transcripts: ENSMUST00000001900.9 ENSMUST00000159813.8 ENSMUST00000159941.8 ENSMUST00000161915.8 ENSMUST00000162066.8 ENSMUST00000162358.8 ENSMUST00000162941.8 |
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| CDS TCA 90 bp | CCTGTGCTCCTCCAAGGACCACGGCCTTCAAACGCTGGCTTTTTGTaGAGATGCAGATCAGGACAACACAAATCAATAAGAAGGCCAAGT | + |
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Preference number: 5 (lower is better) Translates to: PVLLQGPRPSNAGFL*RCRSGQHKSIRRPS Trigger: ACTTGGCCTTCTTATTGATTTGTGTTGTCCTGATCTGCATCTTCACAAAAAGCCAGCGTTTGAAGGCCGTGGTCCTTGGAGGAGCACAGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 7 transcripts: ENSMUST00000001900.9 ENSMUST00000159813.8 ENSMUST00000159941.8 ENSMUST00000161915.8 ENSMUST00000162066.8 ENSMUST00000162358.8 ENSMUST00000162941.8 |
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| CDS CCA 90 bp | ACAACCTGCAGTGCTTGGAGCGGGCTGGTTTCCTTAAATCGCAAGTaGGGCACCTCGAGTTCTTTGGAAACATCACATCATCGAATTTAT | + |
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Preference number: 5 (lower is better) Translates to: TTCSAWSGLVSLNRK*GTSSSLETSHHRIY Trigger: ATAAATTCGATGATGTGATGTTTCCAAAGAACTCGAGGTGCCCCACTTGCGATTTAAGGAAACCAGCCCGCTCCAAGCACTGCAGGTTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000001900.9 ENSMUST00000159941.8 ENSMUST00000161915.8 ENSMUST00000162941.8 |
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| CDS CCA 90 bp | ACTTACTGCAGTGCTTGGAGCGGGCTGGTTTCCTTAAATCGCAAGTaGGGCACCTCGAGTTCTTTGGAAACATCACATCATCGAATTTAT | + |
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Preference number: 5 (lower is better) Translates to: TYCSAWSGLVSLNRK*GTSSSLETSHHRIY Trigger: ATAAATTCGATGATGTGATGTTTCCAAAGAACTCGAGGTGCCCCACTTGCGATTTAAGGAAACCAGCCCGCTCCAAGCACTGCAGTAAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159813.8 |
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| CDS-3UTR CAA 90 bp | ACTGTATTTAAAAGGCAGGGCACTTCCGCTCTATTTCTCCTTTTTCTTGTAACTGGCACCTCGAGTTCTTaGGAAACATCACATCATCGA | + |
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Preference number: 5 (lower is better) Translates to: TVFKRQGTSALFLLFLVTGTSSS*ETSHHR Trigger: TCGATGATGTGATGTTTCCAAAGAACTCGAGGTGCC...AGTTACAAGAAAAAGGAGAAATAGAGCGGAAGTGCCCTGCCTTTTAAATACAGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000159813.8 |
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| CDS GCA 72 bp | CTGGAGGCACTGCGGGATTACCCTGGAGCACACCTGTaGTCCTCCAAGGACCACGGCCTTCAAACGCTGGCT | + |
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Preference number: 6 (lower is better) Translates to: LEALRDYPGAHL*SSKDHGLQTLA Trigger: AGCCAGCGTTTGAAGGCCGTGGTCCTTGGAGGAGCACAGGTGTGCTCCAGGGTAATCCCGCAGTGCCTCCAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000001900.9 ENSMUST00000159813.8 ENSMUST00000159941.8 ENSMUST00000161915.8 ENSMUST00000162066.8 ENSMUST00000162358.8 ENSMUST00000162941.8 |
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| CDS CCA 72 bp | ACCGGTGCACACAGCGGTCACACAACCTGCAGTGCTTaGAGCGGGCTGGTTTCCTTAAATCGCAAGTGGGGC | + |
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Preference number: 6 (lower is better) Translates to: TGAHSGHTTCSA*SGLVSLNRKWG Trigger: GCCCCACTTGCGATTTAAGGAAACCAGCCCGCTCCAAGCACTGCAGGTTGTGTGACCGCTGTGTGCACCGGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000001900.9 ENSMUST00000159941.8 ENSMUST00000161915.8 ENSMUST00000162941.8 |
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| CDS CAA 90 bp | GTGCACACAGCGGTCACACAACCTGCAGTGCACTTACTGCAGTGCTaGGAGCGGGCTGGTTTCCTTAAATCGCAAGTGGGGCACCTCGAG | + |
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Preference number: 6 (lower is better) Translates to: VHTAVTQPAVHLLQC*ERAGFLKSQVGHLE Trigger: CTCGAGGTGCCCCACTTGCGATTTAAGGAAACCAGCCCGCTCCAAGCACTGCAGTAAGTGCACTGCAGGTTGTGTGACCGCTGTGTGCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159813.8 |
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| CDS CAA 72 bp | AACCGGTGCACACAGCGGTCACACAACCTGCAGTGCTaGGAGCGGGCTGGTTTCCTTAAATCGCAAGTGGGG | + |
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Preference number: 6 (lower is better) Translates to: NRCTQRSHNLQC*ERAGFLKSQVG Trigger: CCCCACTTGCGATTTAAGGAAACCAGCCCGCTCCAAGCACTGCAGGTTGTGTGACCGCTGTGTGCACCGGTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000001900.9 ENSMUST00000159941.8 ENSMUST00000161915.8 ENSMUST00000162941.8 |
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| CDS CCA 72 bp | CGGTCACACAACCTGCAGTGCACTTACTGCAGTGCTTaGAGCGGGCTGGTTTCCTTAAATCGCAAGTGGGGC | + |
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Preference number: 6 (lower is better) Translates to: RSHNLQCTYCSA*SGLVSLNRKWG Trigger: GCCCCACTTGCGATTTAAGGAAACCAGCCCGCTCCAAGCACTGCAGTAAGTGCACTGCAGGTTGTGTGACCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159813.8 |
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| CDS CAA 72 bp | GCGGTCACACAACCTGCAGTGCACTTACTGCAGTGCTaGGAGCGGGCTGGTTTCCTTAAATCGCAAGTGGGG | + |
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Preference number: 6 (lower is better) Translates to: AVTQPAVHLLQC*ERAGFLKSQVG Trigger: CCCCACTTGCGATTTAAGGAAACCAGCCCGCTCCAAGCACTGCAGTAAGTGCACTGCAGGTTGTGTGACCGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159813.8 |
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| CDS GCA 72 bp | TGCACACAGCGGTCACACAACCTGCAGTGCACTTACTaGAGTGCTTGGAGCGGGCTGGTTTCCTTAAATCGC | + |
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Preference number: 6 (lower is better) Translates to: CTQRSHNLQCTY*SAWSGLVSLNR Trigger: GCGATTTAAGGAAACCAGCCCGCTCCAAGCACTGCAGTAAGTGCACTGCAGGTTGTGTGACCGCTGTGTGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159813.8 |
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| CDS GCA 72 bp | ACAGCGGTCACACAACCTGCAGTGCACTTACTGCAGTaGTTGGAGCGGGCTGGTTTCCTTAAATCGCAAGTG | + |
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Preference number: 6 (lower is better) Translates to: TAVTQPAVHLLQ*LERAGFLKSQV Trigger: CACTTGCGATTTAAGGAAACCAGCCCGCTCCAAGCACTGCAGTAAGTGCACTGCAGGTTGTGTGACCGCTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159813.8 |
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| CDS CCA 72 bp | ACCTGTGCTCCTCCAAGGACCACGGCCTTCAAACGCTaGCTTTTTGTGAAGATGCAGATCAGGACAACACAA | + |
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Preference number: 6 (lower is better) Translates to: TCAPPRTTAFKR*LFVKMQIRTTQ Trigger: TTGTGTTGTCCTGATCTGCATCTTCACAAAAAGCCAGCGTTTGAAGGCCGTGGTCCTTGGAGGAGCACAGGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 7 transcripts: ENSMUST00000001900.9 ENSMUST00000159813.8 ENSMUST00000159941.8 ENSMUST00000161915.8 ENSMUST00000162066.8 ENSMUST00000162358.8 ENSMUST00000162941.8 |
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| CDS CCA 72 bp | AGTGCTTGGAGCGGGCTGGTTTCCTTAAATCGCAAGTaGGGCACCTCGAGTTCTTTGGAAACATCACATCAT | + |
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Preference number: 6 (lower is better) Translates to: SAWSGLVSLNRK*GTSSSLETSHH Trigger: ATGATGTGATGTTTCCAAAGAACTCGAGGTGCCCCACTTGCGATTTAAGGAAACCAGCCCGCTCCAAGCACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000001900.9 ENSMUST00000159813.8 ENSMUST00000159941.8 ENSMUST00000161915.8 ENSMUST00000162941.8 |
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| CDS CAA 90 bp | ACTTGCAGAAGAAATGATTCGTTTGCTTTAGTGATGGTACCAGGATaGGCGGCACAAGTCAGGGTGAAGAACACCAGGTTCACGCTTAGC | + |
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Preference number: 6 (lower is better) Translates to: TCRRNDSFALVMVPG*AAQVRVKNTRFTLS Trigger: GCTAAGCGTGAACCTGGTGTTCTTCACCCTGACTTGTGCCGCCAATCCTGGTACCATCACTAAAGCAAACGAATCATTTCTTCTGCAAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000001900.9 ENSMUST00000159813.8 ENSMUST00000159941.8 ENSMUST00000161915.8 ENSMUST00000162941.8 |
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| CDS CAA 72 bp | AGAAATGATTCGTTTGCTTTAGTGATGGTACCAGGATaGGCGGCACAAGTCAGGGTGAAGAACACCAGGTTC | + |
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Preference number: 6 (lower is better) Translates to: RNDSFALVMVPG*AAQVRVKNTRF Trigger: GAACCTGGTGTTCTTCACCCTGACTTGTGCCGCCAATCCTGGTACCATCACTAAAGCAAACGAATCATTTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000001900.9 ENSMUST00000159813.8 ENSMUST00000159941.8 ENSMUST00000161915.8 ENSMUST00000162941.8 |
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| CDS TCA 72 bp | CTCCAAGGACCACGGCCTTCAAACGCTGGCTTTTTGTaGAGATGCAGATCAGGACAACACAAATCAATAAGA | + |
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Preference number: 6 (lower is better) Translates to: LQGPRPSNAGFL*RCRSGQHKSIR Trigger: TCTTATTGATTTGTGTTGTCCTGATCTGCATCTTCACAAAAAGCCAGCGTTTGAAGGCCGTGGTCCTTGGAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 7 transcripts: ENSMUST00000001900.9 ENSMUST00000159813.8 ENSMUST00000159941.8 ENSMUST00000161915.8 ENSMUST00000162066.8 ENSMUST00000162358.8 ENSMUST00000162941.8 |
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| CDS CAA 90 bp | AGCGGGCTGGTTTCCTTAAATCGCAAGTGGGGCACCTCGAGTTCTTaGGAAACATCACATCATCGAATTTATAGACTTGCAGAAGAAATG | + |
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Preference number: 6 (lower is better) Translates to: SGLVSLNRKWGTSSS*ETSHHRIYRLAEEM Trigger: CATTTCTTCTGCAAGTCTATAAATTCGATGATGTGATGTTTCCAAAGAACTCGAGGTGCCCCACTTGCGATTTAAGGAAACCAGCCCGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000001900.9 ENSMUST00000159813.8 ENSMUST00000159941.8 ENSMUST00000161915.8 ENSMUST00000162941.8 |
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| CDS CAA 72 bp | GTTTCCTTAAATCGCAAGTGGGGCACCTCGAGTTCTTaGGAAACATCACATCATCGAATTTATAGACTTGCA | + |
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Preference number: 6 (lower is better) Translates to: VSLNRKWGTSSS*ETSHHRIYRLA Trigger: TGCAAGTCTATAAATTCGATGATGTGATGTTTCCAAAGAACTCGAGGTGCCCCACTTGCGATTTAAGGAAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000001900.9 ENSMUST00000159813.8 ENSMUST00000159941.8 ENSMUST00000161915.8 ENSMUST00000162941.8 |
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