Pregenerated sensors for ZDHHC20 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021969Ensembl transcript IDs: ENSMUST00000089473.5, ENSMUST00000226057.2
Found 78 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTCATGTCAATAGCTGGTACACTGCAGCTGCTTTGGTTGGCACAGTaGCAGGGTCAGGTGCCGCAGGTACTCAACAGTCAAGTACCTCTG | + |
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Preference number: 1 (lower is better) Translates to: FMSIAGTLQLLWLAQ*QGQVPQVLNSQVPL Trigger: CAGAGGTACTTGACTGTTGAGTACCTGCGGCACCTGACCCTGTCACTGTGCCAACCAAAGCAGCTGCAGTGTACCAGCTATTGACATGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR GCA 90 bp | CCTATAGTCCAACTCCTGCAGGATGCCTTCTCCACAGTCCTATTGTaGACACAGACACTGCATAGCCACATCCTAGACAGCAGCACATCA | + |
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Preference number: 1 (lower is better) Translates to: PIVQLLQDAFSTVLL*TQTLHSHILDSSTS Trigger: TGATGTGCTGCTGTCTAGGATGTGGCTATGCAGTGTCTGTGTGCACAATAGGACTGTGGAGAAGGCATCCTGCAGGAGTTGGACTATAGG 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR GCA 90 bp | CAAGTGCTGAGACGGCCAGCAGGCGCCAGCATGCCTAGCAGTAACTaGTATCTCTTAAGTCACTGTTTTTATAGAATGAAAGTCAAAAGA | + |
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Preference number: 1 (lower is better) Translates to: QVLRRPAGASMPSSN*YLLSHCFYRMKVKR Trigger: TCTTTTGACTTTCATTCTATAAAAACAGTGACTTAAGAGATAGCAGTTACTGCTAGGCATGCTGGCGCCTGCTGGCCGTCTCAGCACTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR TCA 90 bp | AAGCCTGGGACGTCGTGGTTTTGTTTTACATATTTCATCCTTATCTaGACTGCATTTGAGTTGCTGTTGACTCGGCTACAGGATTCCTGT | + |
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Preference number: 1 (lower is better) Translates to: KPGTSWFCFTYFILI*TAFELLLTRLQDSC Trigger: ACAGGAATCCTGTAGCCGAGTCAACAGCAACTCAAATGCAGTTCAGATAAGGATGAAATATGTAAAACAAAACCACGACGTCCCAGGCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR CCA 90 bp | GAATACCAACGTGTAGTTGTTTCCTACCATGTTTCCTTTGAGCCTTaGGCTCACACTACACCACATGGCTGTATTATTCTGTGTTTTAGA | + |
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Preference number: 1 (lower is better) Translates to: EYQRVVVSYHVSFEP*AHTTPHGCIILCFR Trigger: TCTAAAACACAGAATAATACAGCCATGTGGTGTAGTGTGAGCCCAAGGCTCAAAGGAAACATGGTAGGAAACAACTACACGTTGGTATTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089473.5 ENSMUST00000226057.2 |
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| 3UTR CCA 90 bp | ATTTCTGAAAGTAGCATGCACACTACCAAATTGAAGTTGTATTTCTaGTTAGTAATTGATCTTCGTTTCCTCTCGGGCTGTTTAGCACAG | + |
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Preference number: 1 (lower is better) Translates to: ISESSMHTTKLKLYF*LVIDLRFLSGCLAQ Trigger: CTGTGCTAAACAGCCCGAGAGGAAACGAAGATCAATTACTAACCAGAAATACAACTTCAATTTGGTAGTGTGCATGCTACTTTCAGAAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR CAA 90 bp | AACAGCTTCAGCTCGGGCCAGGGATGTAGCTCAGTGGTAGGGGACTaGCCTAGTATGCAGAAGGCCCTGGATTTGATTCCCAGCACTAAA | + |
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Preference number: 2 (lower is better) Translates to: NSFSSGQGCSSVVGD*PSMQKALDLIPSTK Trigger: TTTAGTGCTGGGAATCAAATCCAGGGCCTTCTGCATACTAGGCAAGTCCCCTACCACTGAGCTACATCCCTGGCCCGAGCTGAAGCTGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR-3UTR GCA 90 bp | CACATACTAAACAGCCAGCCTTCCCTGATTCCCATGCTGGTCCCTTGCTGGTCCCCTCAGCCTTCTGAATaGTGGGATTATAGGCATGTG | + |
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Preference number: 2 (lower is better) Translates to: HILNSQPSLIPMLVPCWSPQPSE*WDYRHV Trigger: CACATGCCTATAATCCCAGCATTCAGAAGGCTGAGG...GGACCAGCAAGGGACCAGCATGGGAATCAGGGAAGGCTGGCTGTTTAGTATGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR CAA 90 bp | AGTCCTATAGTCCAACTCCTGCAGGATGCCTTCTCCACAGTCCTATaGTGCACACAGACACTGCATAGCCACATCCTAGACAGCAGCACA | + |
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Preference number: 2 (lower is better) Translates to: SPIVQLLQDAFSTVL*CTQTLHSHILDSST Trigger: TGTGCTGCTGTCTAGGATGTGGCTATGCAGTGTCTGTGTGCACAATAGGACTGTGGAGAAGGCATCCTGCAGGAGTTGGACTATAGGACT 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR-3UTR TCA 90 bp | CACATACTAAACAGCCAGCCTTCCCTGATTCCCATGCTGGTCCCTTGCTGGTCCAAATTAAGTCACTTTTaGGCTGTGAGGCAATGTCAC | + |
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Preference number: 2 (lower is better) Translates to: HILNSQPSLIPMLVPCWSKLSHF*AVRQCH Trigger: GTGACATTGCCTCACAGCTCAAAAGTGACTTAATTT...GGACCAGCAAGGGACCAGCATGGGAATCAGGGAAGGCTGGCTGTTTAGTATGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR-3UTR GCA 90 bp | GTTTCCTACCATGTTTCCTTTGAGCCTTGGGCTCACACTACACCACATGGCTGTCTTTCCGCTCTGCAGTaGTTCTGTGGATCCATCAAA | + |
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Preference number: 2 (lower is better) Translates to: VSYHVSFEPWAHTTPHGCLSALQ*FCGSIK Trigger: TTTGATGGATCCACAGAAGCACTGCAGAGCGGAAAG...ACAGCCATGTGGTGTAGTGTGAGCCCAAGGCTCAAAGGAAACATGGTAGGAAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089473.5 ENSMUST00000226057.2 |
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| 3UTR-3UTR TCA 90 bp | AGAGATCTCTTGACTCATTTCAAGCATTCCTGTAAACAGTCAAAATTTGCTATCCACACTCCCAAGTGCTaGGACGGCCAGCAGGCGCCA | + |
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Preference number: 2 (lower is better) Translates to: RDLLTHFKHSCKQSKFAIHTPKC*DGQQAP Trigger: TGGCGCCTGCTGGCCGTCTCAGCACTTGGGAGTGTG...GATAGCAAATTTTGACTGTTTACAGGAATGCTTGAAATGAGTCAAGAGATCTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR-3UTR CCA 90 bp | CACGTGAACCTCTGTGCTTCCCTGCCCATAAAAACTTCCCTTGAACACTCAACACAGCCTTCTGAATGCTaGGATTATAGGCATGTGCCA | + |
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Preference number: 2 (lower is better) Translates to: HVNLCASLPIKTSLEHSTQPSEC*DYRHVP Trigger: TGGCACATGCCTATAATCCCAGCATTCAGAAGGCTG...TGTTGAGTGTTCAAGGGAAGTTTTTATGGGCAGGGAAGCACAGAGGTTCACGTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000089473.5 ENSMUST00000226057.2 |
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| 3UTR-3UTR CCA 90 bp | CACGTGAACCTCTGTGCTTCCCTGCCCATAAAAACTTCCCTTGAACACTCAACAGTTTCCTTTGAGCCTTaGGCTCACACTACACCACAT | + |
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Preference number: 2 (lower is better) Translates to: HVNLCASLPIKTSLEHSTVSFEP*AHTTPH Trigger: ATGTGGTGTAGTGTGAGCCCAAGGCTCAAAGGAAAC...TGTTGAGTGTTCAAGGGAAGTTTTTATGGGCAGGGAAGCACAGAGGTTCACGTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000089473.5 ENSMUST00000226057.2 |
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| 3UTR-3UTR TCA 90 bp | CACGTGAACCTCTGTGCTTCCCTGCCCATAAAAACTTCCCTTGAACACTCAACAGTCACTTTTGAGCTGTaGGGCAATGTCACACAAATG | + |
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Preference number: 2 (lower is better) Translates to: HVNLCASLPIKTSLEHSTVTFEL*GNVTQM Trigger: CATTTGTGTGACATTGCCTCACAGCTCAAAAGTGAC...TGTTGAGTGTTCAAGGGAAGTTTTTATGGGCAGGGAAGCACAGAGGTTCACGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000089473.5 ENSMUST00000226057.2 |
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| 3UTR-3UTR CCA 90 bp | CACATACTAAACAGCCAGCCTTCCCTGATTCCCATGCTGGTCCCTTGCTGGTCCCCTCAAGCAATCATTTaGGATTGTTTCATTTCTTTC | + |
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Preference number: 2 (lower is better) Translates to: HILNSQPSLIPMLVPCWSPQAII*DCFISF Trigger: GAAAGAAATGAAACAATCCCAAATGATTGCTTGAGG...GGACCAGCAAGGGACCAGCATGGGAATCAGGGAAGGCTGGCTGTTTAGTATGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR-3UTR CCA 90 bp | GACAAAACTCAACTTTGTAAACATGTTCATGTCAATAGCTGGTACACTGCAGCTATGCTGGTCCCTTGCTaGTCCCTAATGAGCGGCCAC | + |
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Preference number: 2 (lower is better) Translates to: DKTQLCKHVHVNSWYTAAMLVPC*SLMSGH Trigger: GTGGCCGCTCATTAGGGACCAGCAAGGGACCAGCAT...AGCTGCAGTGTACCAGCTATTGACATGAACATGTTTACAAAGTTGAGTTTTGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR-3UTR GCA 90 bp | ATACTACATACAACTTTAAACCATGGTGCCAAAGCTGACTCACTCCTTTGGTCCCTTTCCGCTCTGCAGTaGTTCTGTGGATCCATCAAA | + |
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Preference number: 2 (lower is better) Translates to: ILHTTLNHGAKADSLLWSLSALQ*FCGSIK Trigger: TTTGATGGATCCACAGAAGCACTGCAGAGCGGAAAG...GGACCAAAGGAGTGAGTCAGCTTTGGCACCATGGTTTAAAGTTGTATGTAGTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR-3UTR CCA 90 bp | GACTTGCCTAGTATGCAGAAGGCCCTGGATTTGATTCCCAGCACTAAAATGAAATCTTCTTCCAGAATGTaGCTGATGTCAGGTTGTAGG | + |
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Preference number: 2 (lower is better) Translates to: DLPSMQKALDLIPSTKMKSSSRM*LMSGCR Trigger: CCTACAACCTGACATCAGCCACATTCTGGAAGAAGA...TTTCATTTTAGTGCTGGGAATCAAATCCAGGGCCTTCTGCATACTAGGCAAGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR-3UTR TCA 90 bp | GTCTCTATGCAACCAATGCTAGACTCAAAATCACAGAATATTACCTCAGCCTTCGTCACTTTTGAGCTGTaGGGCAATGTCACACAAATG | + |
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Preference number: 2 (lower is better) Translates to: VSMQPMLDSKSQNITSAFVTFEL*GNVTQM Trigger: CATTTGTGTGACATTGCCTCACAGCTCAAAAGTGAC...GAAGGCTGAGGTAATATTCTGTGATTTTGAGTCTAGCATTGGTTGCATAGAGAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000089473.5 ENSMUST00000226057.2 |
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| 3UTR-3UTR GCA 90 bp | GACTTGCCTAGTATGCAGAAGGCCCTGGATTTGATTCCCAGCACTAAAATGAAAATGCCTAGCAGTAACTaGTATCTCTTAAGTCACTGT | + |
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Preference number: 2 (lower is better) Translates to: DLPSMQKALDLIPSTKMKMPSSN*YLLSHC Trigger: ACAGTGACTTAAGAGATAGCAGTTACTGCTAGGCAT...TTTCATTTTAGTGCTGGGAATCAAATCCAGGGCCTTCTGCATACTAGGCAAGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR-3UTR CCA 90 bp | CACGTGAACCTCTGTGCTTCCCTGCCCATAAAAACTTCCCTTGAACACTCAACAGCAATGTCACACAAATaGACACTAAAAATTAAGGCA | + |
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Preference number: 2 (lower is better) Translates to: HVNLCASLPIKTSLEHSTAMSHK*TLKIKA Trigger: TGCCTTAATTTTTAGTGTCCATTTGTGTGACATTGC...TGTTGAGTGTTCAAGGGAAGTTTTTATGGGCAGGGAAGCACAGAGGTTCACGTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000089473.5 ENSMUST00000226057.2 |
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| 3UTR-3UTR GCA 90 bp | GTCTCTATGCAACCAATGCTAGACTCAAAATCACAGAATATTACCTCAGCCTTCGGGATTATAGGCATGTaGCACTTGGCTTTTAAAAGT | + |
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Preference number: 2 (lower is better) Translates to: VSMQPMLDSKSQNITSAFGIIGM*HLAFKS Trigger: ACTTTTAAAAGCCAAGTGGCACATGCCTATAATCCC...GAAGGCTGAGGTAATATTCTGTGATTTTGAGTCTAGCATTGGTTGCATAGAGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000089473.5 ENSMUST00000226057.2 |
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| 3UTR CAA 90 bp | GCAAAAGTACTACTTTATAGAACAAGATGTAAGCGAAACGTAGTTTaGAGTTACTGCCTATCCAATGCCACAAATACACAGGCTCGAACA | + |
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Preference number: 2 (lower is better) Translates to: AKVLLYRTRCKRNVV*SYCLSNATNTQART Trigger: TGTTCGAGCCTGTGTATTTGTGGCATTGGATAGGCAGTAACTCAAAACTACGTTTCGCTTACATCTTGTTCTATAAAGTAGTACTTTTGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR-3UTR TCA 90 bp | CCCTTGAACACTCAACAACTAGTAATTAAAGAGCAGAGAATACCAACGTGTAGTAAATTAAGTCACTTTTaGGCTGTGAGGCAATGTCAC | + |
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Preference number: 2 (lower is better) Translates to: PLNTQQLVIKEQRIPTCSKLSHF*AVRQCH Trigger: GTGACATTGCCTCACAGCTCAAAAGTGACTTAATTT...ACTACACGTTGGTATTCTCTGCTCTTTAATTACTAGTTGTTGAGTGTTCAAGGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089473.5 ENSMUST00000226057.2 |
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| 3UTR CAA 90 bp | TCAGAGACGTCTCTCTGCTGGTCCACCTCAAGCAATCATTTGGGATaGTTTCATTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT | + |
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Preference number: 2 (lower is better) Translates to: SETSLCWSTSSNHLG*FHFFLSFFLSFFLS Trigger: AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAATGAAACAATCCCAAATGATTGCTTGAGGTGGACCAGCAGAGAGACGTCTCTGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR-3UTR CCA 90 bp | AGAGATCTCTTGACTCATTTCAAGCATTCCTGTAAACAGTCAAAATTTGCTATCTTGGTTTTTCAAGACTaGGTTTCTCTGTGTAGCCCT | + |
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Preference number: 2 (lower is better) Translates to: RDLLTHFKHSCKQSKFAILVFQD*VSLCSP Trigger: AGGGCTACACAGAGAAACCCAGTCTTGAAAAACCAA...GATAGCAAATTTTGACTGTTTACAGGAATGCTTGAAATGAGTCAAGAGATCTCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR-3UTR GCA 90 bp | AGAGATCTCTTGACTCATTTCAAGCATTCCTGTAAACAGTCAAAATTTGCTATCGGGATTATAGGCATGTaGCACTTGGCTTTTAAAAGT | + |
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Preference number: 2 (lower is better) Translates to: RDLLTHFKHSCKQSKFAIGIIGM*HLAFKS Trigger: ACTTTTAAAAGCCAAGTGGCACATGCCTATAATCCC...GATAGCAAATTTTGACTGTTTACAGGAATGCTTGAAATGAGTCAAGAGATCTCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR-3UTR CCA 90 bp | AGAGATCTCTTGACTCATTTCAAGCATTCCTGTAAACAGTCAAAATTTGCTATCAAGCCTGGGACGTCGTaGTTTTGTTTTACATATTTC | + |
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Preference number: 2 (lower is better) Translates to: RDLLTHFKHSCKQSKFAIKPGTS*FCFTYF Trigger: GAAATATGTAAAACAAAACCACGACGTCCCAGGCTT...GATAGCAAATTTTGACTGTTTACAGGAATGCTTGAAATGAGTCAAGAGATCTCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR CAA 90 bp | TTTGATAAACGGTATAAACCAAAAATAGCATCTCTACATTGCCTTTaGACAGACCAGTGGACTAATCTCCTCAATACAGCCATTTCTATT | + |
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Preference number: 2 (lower is better) Translates to: FDKRYKPKIASLHCL*TDQWTNLLNTAISI Trigger: AATAGAAATGGCTGTATTGAGGAGATTAGTCCACTGGTCTGTCAAAAGGCAATGTAGAGATGCTATTTTTGGTTTATACCGTTTATCAAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR GCA 72 bp | TGTAGACCAGGCCGGCCTCGAACTCAGAAATCCACCTaGCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTG | + |
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Preference number: 3 (lower is better) Translates to: CRPGRPRTQKST*LCLPSAGIKGV Trigger: CACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCGGCCTGGTCTACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR TCA 72 bp | CAGGTTGTAGGTCTGAGGGCAAGGGCCTTTATCTACTaGGACATTTCTCCAGCCCAAGCCTGGGACGTCGTG | + |
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Preference number: 3 (lower is better) Translates to: QVVGLRARAFIY*DISPAQAWDVV Trigger: CACGACGTCCCAGGCTTGGGCTGGAGAAATGTCTCAGTAGATAAAGGCCCTTGCCCTCAGACCTACAACCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR TCA 72 bp | ATAGCTGGTACACTGCAGCTGCTTTGGTTGGCACAGTaGCAGGGTCAGGTGCCGCAGGTACTCAACAGTCAA | + |
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Preference number: 3 (lower is better) Translates to: IAGTLQLLWLAQ*QGQVPQVLNSQ Trigger: TTGACTGTTGAGTACCTGCGGCACCTGACCCTGTCACTGTGCCAACCAAAGCAGCTGCAGTGTACCAGCTAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR GCA 72 bp | CAACTCCTGCAGGATGCCTTCTCCACAGTCCTATTGTaGACACAGACACTGCATAGCCACATCCTAGACAGC | + |
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Preference number: 3 (lower is better) Translates to: QLLQDAFSTVLL*TQTLHSHILDS Trigger: GCTGTCTAGGATGTGGCTATGCAGTGTCTGTGTGCACAATAGGACTGTGGAGAAGGCATCCTGCAGGAGTTG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR-3UTR CAA 90 bp | TGTAGACCAGGCCGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTACAAGAATCAGTGATTaGGGCATCATTTTTAGCCCC | + |
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Preference number: 3 (lower is better) Translates to: CRPGRPRTQKSTCLCLPSTRISD*GIIFSP Trigger: GGGGCTAAAAATGATGCCCAAATCACTGATTCTTGT...ACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCGGCCTGGTCTACA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR TCA 72 bp | TGTGTGGGAGTTAGGTATCTTCTTCCAGAATGTGGCTaGTGTCAGGTTGTAGGTCTGAGGGCAAGGGCCTTT | + |
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Preference number: 3 (lower is better) Translates to: CVGVRYLLPECG*CQVVGLRARAF Trigger: AAAGGCCCTTGCCCTCAGACCTACAACCTGACATCAGCCACATTCTGGAAGAAGATACCTAACTCCCACACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR CCA 72 bp | AGTCACTCCCACCTATTCATATATGTGTTAGGTCTTTaGATAGCACGTGAACCTCTGTGCTTCCCTGCCCAT | + |
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Preference number: 3 (lower is better) Translates to: SHSHLFIYVLGL*IAREPLCFPAH Trigger: ATGGGCAGGGAAGCACAGAGGTTCACGTGCTATCCAAAGACCTAACACATATATGAATAGGTGGGAGTGACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089473.5 ENSMUST00000226057.2 |
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| 3UTR CCA 72 bp | ATCCTAGACAGCAGCACATCAGAGACGTCTCTCTGCTaGTCCACCTCAAGCAATCATTTGGGATTGTTTCAT | + |
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Preference number: 3 (lower is better) Translates to: ILDSSTSETSLC*STSSNHLGLFH Trigger: ATGAAACAATCCCAAATGATTGCTTGAGGTGGACCAGCAGAGAGACGTCTCTGATGTGCTGCTGTCTAGGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR-3UTR CAA 90 bp | CTGGGTAATGTTGGGAGTCCTATAGTCCAACTCCTGCAGGATGCCTTCTCCACAATAGGCATGTGCCACTaGGCTTTTAAAAGTACTAAT | + |
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Preference number: 3 (lower is better) Translates to: LGNVGSPIVQLLQDAFSTIGMCH*AFKSTN Trigger: ATTAGTACTTTTAAAAGCCAAGTGGCACATGCCTAT...TGTGGAGAAGGCATCCTGCAGGAGTTGGACTATAGGACTCCCAACATTACCCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR TCA 72 bp | ATACCAACGTGTAGTTGTTTCCTACCATGTTTCCTTTaGGCCTTGGGCTCACACTACACCACATGGCTGTAT | + |
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Preference number: 3 (lower is better) Translates to: IPTCSCFLPCFL*ALGSHYTTWLY Trigger: ATACAGCCATGTGGTGTAGTGTGAGCCCAAGGCTCAAAGGAAACATGGTAGGAAACAACTACACGTTGGTAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089473.5 ENSMUST00000226057.2 |
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| 3UTR GCA 72 bp | AGACGGCCAGCAGGCGCCAGCATGCCTAGCAGTAACTaGTATCTCTTAAGTCACTGTTTTTATAGAATGAAA | + |
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Preference number: 3 (lower is better) Translates to: RRPAGASMPSSN*YLLSHCFYRMK Trigger: TTTCATTCTATAAAAACAGTGACTTAAGAGATAGCAGTTACTGCTAGGCATGCTGGCGCCTGCTGGCCGTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR-3UTR CAA 90 bp | GTTTCCTACCATGTTTCCTTTGAGCCTTGGGCTCACACTACACCACATGGCTGTATAGGCATGTGCCACTaGGCTTTTAAAAGTACTAAT | + |
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Preference number: 3 (lower is better) Translates to: VSYHVSFEPWAHTTPHGCIGMCH*AFKSTN Trigger: ATTAGTACTTTTAAAAGCCAAGTGGCACATGCCTAT...ACAGCCATGTGGTGTAGTGTGAGCCCAAGGCTCAAAGGAAACATGGTAGGAAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000089473.5 ENSMUST00000226057.2 |
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| 3UTR-3UTR CAA 90 bp | CCCTTGAACACTCAACAACTAGTAATTAAAGAGCAGAGAATACCAACGTGTAGTCCTACCATGTTTCCTTaGAGCCTTGGGCTCACACTA | + |
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Preference number: 3 (lower is better) Translates to: PLNTQQLVIKEQRIPTCSPTMFP*SLGLTL Trigger: TAGTGTGAGCCCAAGGCTCAAAGGAAACATGGTAGG...ACTACACGTTGGTATTCTCTGCTCTTTAATTACTAGTTGTTGAGTGTTCAAGGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089473.5 ENSMUST00000226057.2 |
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| 3UTR-3UTR CAA 90 bp | AGAGATCTCTTGACTCATTTCAAGCATTCCTGTAAACAGTCAAAATTTGCTATCTACACTGCAGCTGCTTaGGTTGGCACAGTGACAGGG | + |
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Preference number: 3 (lower is better) Translates to: RDLLTHFKHSCKQSKFAIYTAAA*VGTVTG Trigger: CCCTGTCACTGTGCCAACCAAAGCAGCTGCAGTGTA...GATAGCAAATTTTGACTGTTTACAGGAATGCTTGAAATGAGTCAAGAGATCTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR TCA 72 bp | ATTTCATCCTTATCTGAACTGCATTTGAGTTGCTGTTaGCTCGGCTACAGGATTCCTGTAAACGACCACAGT | + |
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Preference number: 3 (lower is better) Translates to: ISSLSELHLSCC*LGYRIPVNDHS Trigger: ACTGTGGTCGTTTACAGGAATCCTGTAGCCGAGTCAACAGCAACTCAAATGCAGTTCAGATAAGGATGAAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR TCA 72 bp | ACTTCCCAAATCGCAAAGTTAGAACAGCAGCGATCTTaGTTTATGCAGGATTTGGAAATCACAGCGCTATCT | + |
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Preference number: 3 (lower is better) Translates to: TSQIAKLEQQRS*FMQDLEITALS Trigger: AGATAGCGCTGTGATTTCCAAATCCTGCATAAATCAAGATCGCTGCTGTTCTAACTTTGCGATTTGGGAAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR TCA 72 bp | CACTACCAAATTGAAGTTGTATTTCTGGTTAGTAATTaGTCTTCGTTTCCTCTCGGGCTGTTTAGCACAGGC | + |
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Preference number: 3 (lower is better) Translates to: HYQIEVVFLVSN*SSFPLGLFSTG Trigger: GCCTGTGCTAAACAGCCCGAGAGGAAACGAAGATCAATTACTAACCAGAAATACAACTTCAATTTGGTAGTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR-3UTR CAA 90 bp | GTCTCTATGCAACCAATGCTAGACTCAAAATCACAGAATATTACCTCAGCCTTCACAAGAATCAGTGATTaGGGCATCATTTTTAGCCCC | + |
|
Preference number: 3 (lower is better) Translates to: VSMQPMLDSKSQNITSAFTRISD*GIIFSP Trigger: GGGGCTAAAAATGATGCCCAAATCACTGATTCTTGT...GAAGGCTGAGGTAATATTCTGTGATTTTGAGTCTAGCATTGGTTGCATAGAGAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000089473.5 ENSMUST00000226057.2 |
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| 3UTR CCA 72 bp | AGTAGCATGCACACTACCAAATTGAAGTTGTATTTCTaGTTAGTAATTGATCTTCGTTTCCTCTCGGGCTGT | + |
|
Preference number: 3 (lower is better) Translates to: SSMHTTKLKLYF*LVIDLRFLSGC Trigger: ACAGCCCGAGAGGAAACGAAGATCAATTACTAACCAGAAATACAACTTCAATTTGGTAGTGTGCATGCTACT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR CCA 72 bp | AGACGTCTCTCTGCTGGTCCACCTCAAGCAATCATTTaGGATTGTTTCATTTCTTTCTTTCTTTCTTTCTTT | + |
|
Preference number: 3 (lower is better) Translates to: RRLSAGPPQAII*DCFISFFLSFF Trigger: AAAGAAAGAAAGAAAGAAAGAAATGAAACAATCCCAAATGATTGCTTGAGGTGGACCAGCAGAGAGACGTCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR-3UTR CAA 90 bp | AGAGATCTCTTGACTCATTTCAAGCATTCCTGTAAACAGTCAAAATTTGCTATCTGGGACGTCGTGGTTTaGTTTTACATATTTCATCCT | + |
|
Preference number: 3 (lower is better) Translates to: RDLLTHFKHSCKQSKFAIWDVVV*FYIFHP Trigger: AGGATGAAATATGTAAAACAAAACCACGACGTCCCA...GATAGCAAATTTTGACTGTTTACAGGAATGCTTGAAATGAGTCAAGAGATCTCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR CCA 72 bp | AAAATAGCATCTCTACATTGCCTTTTGACAGACCAGTaGACTAATCTCCTCAATACAGCCATTTCTATTAAA | + |
|
Preference number: 3 (lower is better) Translates to: KIASLHCLLTDQ*TNLLNTAISIK Trigger: TTTAATAGAAATGGCTGTATTGAGGAGATTAGTCCACTGGTCTGTCAAAAGGCAATGTAGAGATGCTATTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR TCA 72 bp | GTATCAGTTTTGCTTCAGAGAGAATTAGAGATCTCTTaGCTCATTTCAAGCATTCCTGTAAACAGTCAAAAT | + |
|
Preference number: 3 (lower is better) Translates to: VSVLLQRELEIS*LISSIPVNSQN Trigger: ATTTTGACTGTTTACAGGAATGCTTGAAATGAGTCAAGAGATCTCTAATTCTCTCTGAAGCAAAACTGATAC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR CAA 72 bp | AGCTCGGGCCAGGGATGTAGCTCAGTGGTAGGGGACTaGCCTAGTATGCAGAAGGCCCTGGATTTGATTCCC | + |
|
Preference number: 4 (lower is better) Translates to: SSGQGCSSVVGD*PSMQKALDLIP Trigger: GGGAATCAAATCCAGGGCCTTCTGCATACTAGGCAAGTCCCCTACCACTGAGCTACATCCCTGGCCCGAGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR CAA 72 bp | AAACAGCCAGCCTTCCCTGATTCCCATGCTGGTCCCTaGCTGGTCCCTAATGAGCGGCCACTGACACGTATG | + |
|
Preference number: 4 (lower is better) Translates to: KQPAFPDSHAGP*LVPNERPLTRM Trigger: CATACGTGTCAGTGGCCGCTCATTAGGGACCAGCAAGGGACCAGCATGGGAATCAGGGAAGGCTGGCTGTTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| CDS-3UTR TCA 90 bp | TGTAGACCAGGCCGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGTCTTTCTTGGCTaGACTCCTTCTCATAACGCT | + |
|
Preference number: 4 (lower is better) Translates to: CRPGRPRTQKSTCLCLPSAVFLG*TPSHNA Trigger: AGCGTTATGAGAAGGAGTTCAGCCAAGAAAGACAGC...ACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCGGCCTGGTCTACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR CAA 72 bp | CATGTTCATGTCAATAGCTGGTACACTGCAGCTGCTTaGGTTGGCACAGTGACAGGGTCAGGTGCCGCAGGT | + |
|
Preference number: 4 (lower is better) Translates to: HVHVNSWYTAAA*VGTVTGSGAAG Trigger: ACCTGCGGCACCTGACCCTGTCACTGTGCCAACCAAAGCAGCTGCAGTGTACCAGCTATTGACATGAACATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR CAA 72 bp | GTCCAACTCCTGCAGGATGCCTTCTCCACAGTCCTATaGTGCACACAGACACTGCATAGCCACATCCTAGAC | + |
|
Preference number: 4 (lower is better) Translates to: VQLLQDAFSTVL*CTQTLHSHILD Trigger: GTCTAGGATGTGGCTATGCAGTGTCTGTGTGCACAATAGGACTGTGGAGAAGGCATCCTGCAGGAGTTGGAC 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| CDS-3UTR CCA 90 bp | CCCTTGAACACTCAACAACTAGTAATTAAAGAGCAGAGAATACCAACGTGTAGTCAGCCCACCACGCGTTaGCAGCAGCGCCAGAGTGTC | + |
|
Preference number: 4 (lower is better) Translates to: PLNTQQLVIKEQRIPTCSQPTTR*QQRQSV Trigger: GACACTCTGGCGCTGCTGCCAACGCGTGGTGGGCTG...ACTACACGTTGGTATTCTCTGCTCTTTAATTACTAGTTGTTGAGTGTTCAAGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089473.5 ENSMUST00000226057.2 |
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| CDS-3UTR TCA 90 bp | TTCTTTCCCTTATACAGCACAAGAATCAGTGATTTGGGCATCATTTTTAGCCCCGCTGTCTTTCTTGGCTaGACTCCTTCTCATAACGCT | + |
|
Preference number: 4 (lower is better) Translates to: FFPLYSTRISDLGIIFSPAVFLG*TPSHNA Trigger: AGCGTTATGAGAAGGAGTTCAGCCAAGAAAGACAGC...GGGGCTAAAAATGATGCCCAAATCACTGATTCTTGTGCTGTATAAGGGAAAGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000089473.5 ENSMUST00000226057.2 |
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| 3UTR CAA 72 bp | GACATTTCTCCAGCCCAAGCCTGGGACGTCGTGGTTTaGTTTTACATATTTCATCCTTATCTGAACTGCATT | + |
|
Preference number: 4 (lower is better) Translates to: DISPAQAWDVVV*FYIFHPYLNCI Trigger: AATGCAGTTCAGATAAGGATGAAATATGTAAAACAAAACCACGACGTCCCAGGCTTGGGCTGGAGAAATGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR CAA 72 bp | AACTTCCCAAATCGCAAAGTTAGAACAGCAGCGATCTaGATTTATGCAGGATTTGGAAATCACAGCGCTATC | + |
|
Preference number: 4 (lower is better) Translates to: NFPNRKVRTAAI*IYAGFGNHSAI Trigger: GATAGCGCTGTGATTTCCAAATCCTGCATAAATCAAGATCGCTGCTGTTCTAACTTTGCGATTTGGGAAGTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| CDS-3UTR TCA 90 bp | TTCTTTCCCTTATACAGCACAAGAATCAGTGATTTGGGCATCATTTTTAGCCCCATGGTTATTTGTCCCTaGTTTGGTGACTCCTTCTTC | + |
|
Preference number: 4 (lower is better) Translates to: FFPLYSTRISDLGIIFSPMVICP*FGDSFF Trigger: GAAGAAGGAGTCACCAAATCAGGGACAAATAACCAT...GGGGCTAAAAATGATGCCCAAATCACTGATTCTTGTGCTGTATAAGGGAAAGAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000089473.5 ENSMUST00000226057.2 |
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| CDS-3UTR CCA 90 bp | TTCTTTCCCTTATACAGCACAAGAATCAGTGATTTGGGCATCATTTTTAGCCCCCGTGGAACTTTGCGCTaGGGAAATTTAAAACTGTTG | + |
|
Preference number: 4 (lower is better) Translates to: FFPLYSTRISDLGIIFSPRGTLR*GNLKLL Trigger: CAACAGTTTTAAATTTCCCCAGCGCAAAGTTCCACG...GGGGCTAAAAATGATGCCCAAATCACTGATTCTTGTGCTGTATAAGGGAAAGAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000089473.5 ENSMUST00000226057.2 |
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| CDS-3UTR CCA 90 bp | GTCTCTATGCAACCAATGCTAGACTCAAAATCACAGAATATTACCTCAGCCTTCCGTGGAACTTTGCGCTaGGGAAATTTAAAACTGTTG | + |
|
Preference number: 4 (lower is better) Translates to: VSMQPMLDSKSQNITSAFRGTLR*GNLKLL Trigger: CAACAGTTTTAAATTTCCCCAGCGCAAAGTTCCACG...GAAGGCTGAGGTAATATTCTGTGATTTTGAGTCTAGCATTGGTTGCATAGAGAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000089473.5 ENSMUST00000226057.2 |
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| CDS-3UTR TCA 90 bp | CCCTTGAACACTCAACAACTAGTAATTAAAGAGCAGAGAATACCAACGTGTAGTCTCCTTCTCAGAGTTTaGCAAGTAGAACTCTTTGGA | + |
|
Preference number: 4 (lower is better) Translates to: PLNTQQLVIKEQRIPTCSLLLRV*QVELFG Trigger: TCCAAAGAGTTCTACTTGTCAAACTCTGAGAAGGAG...ACTACACGTTGGTATTCTCTGCTCTTTAATTACTAGTTGTTGAGTGTTCAAGGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089473.5 ENSMUST00000226057.2 |
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| CDS-3UTR TCA 90 bp | AGAGATCTCTTGACTCATTTCAAGCATTCCTGTAAACAGTCAAAATTTGCTATCCTCCTTCTCAGAGTTTaGCAAGTAGAACTCTTTGGA | + |
|
Preference number: 4 (lower is better) Translates to: RDLLTHFKHSCKQSKFAILLLRV*QVELFG Trigger: TCCAAAGAGTTCTACTTGTCAAACTCTGAGAAGGAG...GATAGCAAATTTTGACTGTTTACAGGAATGCTTGAAATGAGTCAAGAGATCTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| CDS-3UTR CCA 90 bp | TTCTTTCCCTTATACAGCACAAGAATCAGTGATTTGGGCATCATTTTTAGCCCCTGTTGGTTCATTCTTTaGGCAATTCTCTGTAGATTT | + |
|
Preference number: 4 (lower is better) Translates to: FFPLYSTRISDLGIIFSPCWFIL*AILCRF Trigger: AAATCTACAGAGAATTGCCCAAAGAATGAACCAACA...GGGGCTAAAAATGATGCCCAAATCACTGATTCTTGTGCTGTATAAGGGAAAGAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000226057.2 |
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| 3UTR CAA 72 bp | CTACTTTATAGAACAAGATGTAAGCGAAACGTAGTTTaGAGTTACTGCCTATCCAATGCCACAAATACACAG | + |
|
Preference number: 4 (lower is better) Translates to: LLYRTRCKRNVV*SYCLSNATNTQ Trigger: CTGTGTATTTGTGGCATTGGATAGGCAGTAACTCAAAACTACGTTTCGCTTACATCTTGTTCTATAAAGTAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| 3UTR CAA 72 bp | ATTTCTGAAAGTAGCATGCACACTACCAAATTGAAGTaGTATTTCTGGTTAGTAATTGATCTTCGTTTCCTC | + |
|
Preference number: 4 (lower is better) Translates to: ISESSMHTTKLK*YFWLVIDLRFL Trigger: GAGGAAACGAAGATCAATTACTAACCAGAAATACAACTTCAATTTGGTAGTGTGCATGCTACTTTCAGAAAT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| CDS-3UTR CAA 90 bp | GTTTCCTACCATGTTTCCTTTGAGCCTTGGGCTCACACTACACCACATGGCTGTCCAGCCCACCACGCGTaGGCAGCAGCGCCAGAGTGT | + |
|
Preference number: 5 (lower is better) Translates to: VSYHVSFEPWAHTTPHGCPAHHA*AAAPEC Trigger: ACACTCTGGCGCTGCTGCCAACGCGTGGTGGGCTGG...ACAGCCATGTGGTGTAGTGTGAGCCCAAGGCTCAAAGGAAACATGGTAGGAAAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089473.5 ENSMUST00000226057.2 |
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| CDS-3UTR CAA 90 bp | GTCTCTATGCAACCAATGCTAGACTCAAAATCACAGAATATTACCTCAGCCTTCCCAGCCCACCACGCGTaGGCAGCAGCGCCAGAGTGT | + |
|
Preference number: 5 (lower is better) Translates to: VSMQPMLDSKSQNITSAFPAHHA*AAAPEC Trigger: ACACTCTGGCGCTGCTGCCAACGCGTGGTGGGCTGG...GAAGGCTGAGGTAATATTCTGTGATTTTGAGTCTAGCATTGGTTGCATAGAGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089473.5 ENSMUST00000226057.2 |
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| CDS-3UTR CAA 90 bp | GTTTCCTACCATGTTTCCTTTGAGCCTTGGGCTCACACTACACCACATGGCTGTAACCATCACCCAAACTaGAGAATATTGGAACTAGCC | + |
|
Preference number: 5 (lower is better) Translates to: VSYHVSFEPWAHTTPHGCNHHPN*RILELA Trigger: GGCTAGTTCCAATATTCTCAAGTTTGGGTGATGGTT...ACAGCCATGTGGTGTAGTGTGAGCCCAAGGCTCAAAGGAAACATGGTAGGAAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089473.5 ENSMUST00000226057.2 |
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| CDS-3UTR CAA 90 bp | GACTTGCCTAGTATGCAGAAGGCCCTGGATTTGATTCCCAGCACTAAAATGAAAGTTTGCAACAGAAGCTaGTTCTGGATCCATCCCCAC | + |
|
Preference number: 5 (lower is better) Translates to: DLPSMQKALDLIPSTKMKVCNRS*FWIHPH Trigger: GTGGGGATGGATCCAGAACAAGCTTCTGTTGCAAAC...TTTCATTTTAGTGCTGGGAATCAAATCCAGGGCCTTCTGCATACTAGGCAAGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| CDS-3UTR CAA 90 bp | GTTTCCTACCATGTTTCCTTTGAGCCTTGGGCTCACACTACACCACATGGCTGTTTATTTGTCCCTGATTaGGTGACTCCTTCTTCAGCT | + |
|
Preference number: 5 (lower is better) Translates to: VSYHVSFEPWAHTTPHGCLFVPD*VTPSSA Trigger: AGCTGAAGAAGGAGTCACCAAATCAGGGACAAATAA...ACAGCCATGTGGTGTAGTGTGAGCCCAAGGCTCAAAGGAAACATGGTAGGAAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089473.5 ENSMUST00000226057.2 |
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| CDS-3UTR CAA 90 bp | CCCTTGAACACTCAACAACTAGTAATTAAAGAGCAGAGAATACCAACGTGTAGTTTATTTGTCCCTGATTaGGTGACTCCTTCTTCAGCT | + |
|
Preference number: 5 (lower is better) Translates to: PLNTQQLVIKEQRIPTCSLFVPD*VTPSSA Trigger: AGCTGAAGAAGGAGTCACCAAATCAGGGACAAATAA...ACTACACGTTGGTATTCTCTGCTCTTTAATTACTAGTTGTTGAGTGTTCAAGGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089473.5 ENSMUST00000226057.2 |
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| CDS-3UTR CAA 90 bp | AGAGATCTCTTGACTCATTTCAAGCATTCCTGTAAACAGTCAAAATTTGCTATCAACCATCACCCAAACTaGAGAATATTGGAACTAGCC | + |
|
Preference number: 5 (lower is better) Translates to: RDLLTHFKHSCKQSKFAINHHPN*RILELA Trigger: GGCTAGTTCCAATATTCTCAAGTTTGGGTGATGGTT...GATAGCAAATTTTGACTGTTTACAGGAATGCTTGAAATGAGTCAAGAGATCTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089473.5 |
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| CDS TCA 72 bp | GCTGAACTCCTTCTCATAACGCTCCTTCTCAGAGTTTaGCAAGTAGAACTCTTTGGAAGGGCTAGCAGGAGA | + |
|
Preference number: 6 (lower is better) Translates to: AELLLITLLLRV*QVELFGRASRR Trigger: TCTCCTGCTAGCCCTTCCAAAGAGTTCTACTTGTCAAACTCTGAGAAGGAGCGTTATGAGAAGGAGTTCAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089473.5 ENSMUST00000226057.2 |
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