RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZDHHC17 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000035798

Ensembl transcript IDs: ENSMUST00000041723.15, ENSMUST00000218895.2, ENSMUST00000219307.2, ENSMUST00000220247.2

Found 210 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TCTGACCCCGCCCCCAGTCCCTCCCACAGGTTGCGAACCACAGTTTaGATGAGGGCTAACCAGAGTCTCCCTGTAAACAATATTCATGGA +
Preference number: 1 (lower is better)
Translates to: SDPAPSPSHRLRTTV*MRANQSLPVNNIHG
Trigger: TCCATGAATATTGTTTACAGGGAGACTCTGGTTAGCCCTCATCCAAACTGTGGTTCGCAACCTGTGGGAGGGACTGGGGGCGGGGTCAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
3UTR GCA 90 bp CCGACCAGCCAGATCACCAGGAATGGGGTTCCCAGCATTACTTTCTaGCGAAATTCCTTGTCAGCCTTCAGCTTTCTGAGGAAGGATGGG +
Preference number: 1 (lower is better)
Translates to: PTSQITRNGVPSITF*RNSLSAFSFLRKDG
Trigger: CCCATCCTTCCTCAGAAAGCTGAAGGCTGACAAGGAATTTCGGCAGAAAGTAATGCTGGGAACCCCATTCCTGGTGATCTGGCTGGTCGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000218895.2
ENSMUST00000220247.2
3UTR TCA 90 bp CCTGGCATCCGGACGCTGCTGCTACACAAGCTGGTACCCAGATCCTaGTATTTGGTCATATTCTATAGTGTACTGCCTGGTCCAGTCCAC +
Preference number: 1 (lower is better)
Translates to: PGIRTLLLHKLVPRS*YLVIFYSVLPGPVH
Trigger: GTGGACTGGACCAGGCAGTACACTATAGAATATGACCAAATATCAGGATCTGGGTACCAGCTTGTGTAGCAGCAGCGTCCGGATGCCAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR GCA 90 bp CCTCAGGCACCACTCAGTAACACTGAGTTCCTGGCATCCGGACGCTaGTGCTACACAAGCTGGTACCCAGATCCTGATATTTGGTCATAT +
Preference number: 1 (lower is better)
Translates to: PQAPLSNTEFLASGR*CYTSWYPDPDIWSY
Trigger: ATATGACCAAATATCAGGATCTGGGTACCAGCTTGTGTAGCAGCAGCGTCCGGATGCCAGGAACTCAGTGTTACTGAGTGGTGCCTGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR TCA 90 bp TTATATACAGATACACAGTCTTTACACTGGTCTAGGATGTCAGTCTaGCCCCGCCCCCAGTCCCTCCCACAGGTTGCGAACCACAGTTTG +
Preference number: 1 (lower is better)
Translates to: LYTDTQSLHWSRMSV*PRPQSLPQVANHSL
Trigger: CAAACTGTGGTTCGCAACCTGTGGGAGGGACTGGGGGCGGGGTCAGACTGACATCCTAGACCAGTGTAAAGACTGTGTATCTGTATATAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
3UTR GCA 90 bp CAGGCACCACTCAGTAACACTGAGTTCCTGGCATCCGGACGCTGCTaGTACACAAGCTGGTACCCAGATCCTGATATTTGGTCATATTCT +
Preference number: 1 (lower is better)
Translates to: QAPLSNTEFLASGRC*YTSWYPDPDIWSYS
Trigger: AGAATATGACCAAATATCAGGATCTGGGTACCAGCTTGTGTAGCAGCAGCGTCCGGATGCCAGGAACTCAGTGTTACTGAGTGGTGCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR CCA 90 bp GGGAGCATGTGGCGATCTGAGTTATGTATGTCCAAAACCCATCCTTaGTGTACGTGGTCTCACAGTGAAGGCCCCAGTAAGAGACACAAC +
Preference number: 1 (lower is better)
Translates to: GSMWRSELCMSKTHP*CTWSHSEGPSKRHN
Trigger: GTTGTGTCTCTTACTGGGGCCTTCACTGTGAGACCACGTACACCAAGGATGGGTTTTGGACATACATAACTCAGATCGCCACATGCTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR TCA 90 bp CCAGCATTACTTTCTGCCGAAATTCCTTGTCAGCCTTCAGCTTTCTaGGGAAGGATGGGTTGTCATACCCTTTCGCTTGCCTTGCCTCCT +
Preference number: 1 (lower is better)
Translates to: PALLSAEIPCQPSAF*GRMGCHTLSLALPP
Trigger: AGGAGGCAAGGCAAGCGAAAGGGTATGACAACCCATCCTTCCTCAGAAAGCTGAAGGCTGACAAGGAATTTCGGCAGAAAGTAATGCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000218895.2
ENSMUST00000220247.2
3UTR TCA 90 bp CTATGGTTGCCTGCACCTACACAGTTACCCACCCATGGGCAATGGTaGTCAAATTTCGCTATACAGCGGTTGCACACACCACAGTGTTTG +
Preference number: 1 (lower is better)
Translates to: LWLPAPTQLPTHGQW*SNFAIQRLHTPQCL
Trigger: CAAACACTGTGGTGTGTGCAACCGCTGTATAGCGAAATTTGATCACCATTGCCCATGGGTGGGTAACTGTGTAGGTGCAGGCAACCATAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR TCA 90 bp CTGTTGAGAAACATCCAGAACATCCACGGGGAGCATGTGGCGATCTaGGTTATGTATGTCCAAAACCCATCCTTGGTGTACGTGGTCTCA +
Preference number: 1 (lower is better)
Translates to: LLRNIQNIHGEHVAI*VMYVQNPSLVYVVS
Trigger: TGAGACCACGTACACCAAGGATGGGTTTTGGACATACATAACTCAGATCGCCACATGCTCCCCGTGGATGTTCTGGATGTTTCTCAACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR CCA 90 bp TTTCTGCCGAAATTCCTTGTCAGCCTTCAGCTTTCTGAGGAAGGATaGGTTGTCATACCCTTTCGCTTGCCTTGCCTCCTGCAAATGGTT +
Preference number: 1 (lower is better)
Translates to: FLPKFLVSLQLSEEG*VVIPFRLPCLLQMV
Trigger: AACCATTTGCAGGAGGCAAGGCAAGCGAAAGGGTATGACAACCCATCCTTCCTCAGAAAGCTGAAGGCTGACAAGGAATTTCGGCAGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000218895.2
ENSMUST00000220247.2
3UTR CCA 90 bp TCCGGACGCTGCTGCTACACAAGCTGGTACCCAGATCCTGATATTTaGTCATATTCTATAGTGTACTGCCTGGTCCAGTCCACGATAACA +
Preference number: 1 (lower is better)
Translates to: SGRCCYTSWYPDPDI*SYSIVYCLVQSTIT
Trigger: TGTTATCGTGGACTGGACCAGGCAGTACACTATAGAATATGACCAAATATCAGGATCTGGGTACCAGCTTGTGTAGCAGCAGCGTCCGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR CCA 90 bp GGTGATCAAATTTCGCTATACAGCGGTTGCACACACCACAGTGTTTaGACCTCACTGGCTTCCGAATCAAGCAGGTACTGCAGAATATAC +
Preference number: 1 (lower is better)
Translates to: GDQISLYSGCTHHSV*TSLASESSRYCRIY
Trigger: GTATATTCTGCAGTACCTGCTTGATTCGGAAGCCAGTGAGGTCCAAACACTGTGGTGTGTGCAACCGCTGTATAGCGAAATTTGATCACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR CCA 90 bp TGGCGATCTGAGTTATGTATGTCCAAAACCCATCCTTGGTGTACGTaGTCTCACAGTGAAGGCCCCAGTAAGAGACACAACCATAGATCA +
Preference number: 1 (lower is better)
Translates to: WRSELCMSKTHPWCT*SHSEGPSKRHNHRS
Trigger: TGATCTATGGTTGTGTCTCTTACTGGGGCCTTCACTGTGAGACCACGTACACCAAGGATGGGTTTTGGACATACATAACTCAGATCGCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR CCA 90 bp AGTAACACTGAGTTCCTGGCATCCGGACGCTGCTGCTACACAAGCTaGTACCCAGATCCTGATATTTGGTCATATTCTATAGTGTACTGC +
Preference number: 1 (lower is better)
Translates to: SNTEFLASGRCCYTS*YPDPDIWSYSIVYC
Trigger: GCAGTACACTATAGAATATGACCAAATATCAGGATCTGGGTACCAGCTTGTGTAGCAGCAGCGTCCGGATGCCAGGAACTCAGTGTTACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR TCA 90 bp TGGACCTCACTGGCTTCCGAATCAAGCAGGTACTGCAGAATATACTaGGGTCCAGACTTCCAGTCTCTGCAAGTTCAACTATCGTCTTTT +
Preference number: 1 (lower is better)
Translates to: WTSLASESSRYCRIY*GPDFQSLQVQLSSF
Trigger: AAAAGACGATAGTTGAACTTGCAGAGACTGGAAGTCTGGACCTCAGTATATTCTGCAGTACCTGCTTGATTCGGAAGCCAGTGAGGTCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR TCA 90 bp ACATCTACAGGGGTTGCCTGCTTTACGGAGAAGCATCTCTTGCACTaGAAGGATACTGTACCACAAAGAAAGAACATGGTAACAACATTC +
Preference number: 1 (lower is better)
Translates to: TSTGVACFTEKHLLH*KDTVPQRKNMVTTF
Trigger: GAATGTTGTTACCATGTTCTTTCTTTGTGGTACAGTATCCTTTCAGTGCAAGAGATGCTTCTCCGTAAAGCAGGCAACCCCTGTAGATGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
3UTR GCA 90 bp ATCCAGAATTTGGTTGCCAAATATATCCCAAGGGGCAATGCGCTGTaGATTGAATGGTCAAAGAAGGACTTGGAAAGAAATTGCACTGTA +
Preference number: 1 (lower is better)
Translates to: IQNLVAKYIPRGNAL*IEWSKKDLERNCTV
Trigger: TACAGTGCAATTTCTTTCCAAGTCCTTCTTTGACCATTCAATGCACAGCGCATTGCCCCTTGGGATATATTTGGCAACCAAATTCTGGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000218895.2
ENSMUST00000220247.2
3UTR TCA 90 bp GCAACACAACGTGATCAGTGCATCACATTTAACAGTAAGATCTGCTaGGAAGGCTTCAGAAAGGGTTACCAATGTCAAAACATACTCAAT +
Preference number: 1 (lower is better)
Translates to: ATQRDQCITFNSKIC*EGFRKGYQCQNILN
Trigger: ATTGAGTATGTTTTGACATTGGTAACCCTTTCTGAAGCCTTCTCAGCAGATCTTACTGTTAAATGTGATGCACTGATCACGTTGTGTTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
3UTR GCA 90 bp TCCATTAGCTTTTCAGTTATTCACATGTGCTATGTACAGAGGTCATaGCCCATCTTTAGCCTAGACGCCATTATTTTGTCTACAATTTAT +
Preference number: 1 (lower is better)
Translates to: SISFSVIHMCYVQRS*PIFSLDAIILSTIY
Trigger: ATAAATTGTAGACAAAATAATGGCGTCTAGGCTAAAGATGGGGCATGACCTCTGTACATAGCACATGTGAATAACTGAAAAGCTAATGGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
3UTR GCA 90 bp CCATGGTTGAATGGGCTTTCAATAGATGTTGTCGTAACTTTAAAGTaGTTGTATCTCCTGGCGTTCATTCTTTCATTTGTAGTAATACCT +
Preference number: 1 (lower is better)
Translates to: PWLNGLSIDVVVTLK*LYLLAFILSFVVIP
Trigger: AGGTATTACTACAAATGAAAGAATGAACGCCAGGAGATACAAGCACTTTAAAGTTACGACAACATCTATTGAAAGCCCATTCAACCATGG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR-3UTR TCA 90 bp ACTGAGCATCAACTATGTACATGTCCGCTGCTCCTCCTCCTAAGGCAGGGCGGGTCTAGGATGTCAGTCTaGCCCCGCCCCCAGTCCCTC +
Preference number: 2 (lower is better)
Translates to: TEHQLCTCPLLLLLRQGGSRMSV*PRPQSL
Trigger: GAGGGACTGGGGGCGGGGTCAGACTGACATCCTAGA...CCCGCCCTGCCTTAGGAGGAGGAGCAGCGGACATGTACATAGTTGATGCTCAGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
3UTR CAA 90 bp GCCAAATCAAGTGCTGACTCACCCTTGACGTTCTGGGCGTCCACATaGCCTCCGGCTTCCAGAAGAAGACTAATGACTGTGGTGTTCCCT +
Preference number: 2 (lower is better)
Translates to: AKSSADSPLTFWAST*PPASRRRLMTVVFP
Trigger: AGGGAACACCACAGTCATTAGTCTTCTTCTGGAAGCCGGAGGCAATGTGGACGCCCAGAACGTCAAGGGTGAGTCAGCACTTGATTTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR-3UTR TCA 90 bp TTCCTGGCATCCGGACGCTGCTGCTACACAAGCTGGTACCCAGATCCTGATATTCAGCCTTCAGCTTTCTaGGGAAGGATGGGTTGTCAT +
Preference number: 2 (lower is better)
Translates to: FLASGRCCYTSWYPDPDIQPSAF*GRMGCH
Trigger: ATGACAACCCATCCTTCCTCAGAAAGCTGAAGGCTG...AATATCAGGATCTGGGTACCAGCTTGTGTAGCAGCAGCGTCCGGATGCCAGGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR-3UTR GCA 90 bp GTACAGCTGACACATGAGCAGCACGGCCACCCACAGGAAGTGAAACACACTGTTGCTTGCCTTGCCTCCTaGAAATGGTTGATCATCCAC +
Preference number: 2 (lower is better)
Translates to: VQLTHEQHGHPQEVKHTVACLAS*KWLIIH
Trigger: GTGGATGATCAACCATTTGCAGGAGGCAAGGCAAGC...AACAGTGTGTTTCACTTCCTGTGGGTGGCCGTGCTGCTCATGTGTCAGCTGTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR-3UTR CCA 90 bp ATCCTAAGTTTGCCTAGCACTGGACATGCAGTGAACTTGCAGGGGCGAGTGCCTTATTCCCCGTGCCTTTaGGGACACAGTACAGTAGAC +
Preference number: 2 (lower is better)
Translates to: ILSLPSTGHAVNLQGRVPYSPCL*GHSTVD
Trigger: GTCTACTGTACTGTGTCCCCAAAGGCACGGGGAATA...AGGCACTCGCCCCTGCAAGTTCACTGCATGTCCAGTGCTAGGCAAACTTAGGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
3UTR CAA 90 bp TTACAGGGAATCCTAAGTTTGCCTAGCACTGGACATGCAGTGAACTaGCAGGGGCGAGTGCCTATTAACAGCGGTATGGAACGTCACGAG +
Preference number: 2 (lower is better)
Translates to: LQGILSLPSTGHAVN*QGRVPINSGMERHE
Trigger: CTCGTGACGTTCCATACCGCTGTTAATAGGCACTCGCCCCTGCAAGTTCACTGCATGTCCAGTGCTAGGCAAACTTAGGATTCCCTGTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
3UTR-3UTR TCA 90 bp AGGCACCACTCAGTAACACTGAGTTCCTGGCATCCGGACGCTGCTGCTACACAAAACAGTAAGATCTGCTaGGAAGGCTTCAGAAAGGGT +
Preference number: 2 (lower is better)
Translates to: RHHSVTLSSWHPDAAATQNSKIC*EGFRKG
Trigger: ACCCTTTCTGAAGCCTTCTCAGCAGATCTTACTGTT...TTGTGTAGCAGCAGCGTCCGGATGCCAGGAACTCAGTGTTACTGAGTGGTGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR-3UTR GCA 90 bp GCTATTGTTCCAAGGACGTGGATTCGAGGGAGAGAGAGACAGGGACAGACGCAAGAACATTATTCCCCGTaGCTTTGGGGACACAGTACA +
Preference number: 2 (lower is better)
Translates to: AIVPRTWIRGRERQGQTQEHYSP*LWGHST
Trigger: TGTACTGTGTCCCCAAAGGCACGGGGAATAATGTTC...TTGCGTCTGTCCCTGTCTCTCTCTCCCTCGAATCCACGTCCTTGGAACAATAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
3UTR-3UTR GCA 90 bp TTCGAGGGAGAGAGAGACAGGGACAGACGCAATCCTCAGGCACCACTCAGTAACTATGTACAGAGGTCATaGCCCATCTTTAGCCTAGAC +
Preference number: 2 (lower is better)
Translates to: FEGERDRDRRNPQAPLSNYVQRS*PIFSLD
Trigger: GTCTAGGCTAAAGATGGGGCATGACCTCTGTACATA...GTTACTGAGTGGTGCCTGAGGATTGCGTCTGTCCCTGTCTCTCTCTCCCTCGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
3UTR-3UTR GCA 90 bp GAAGGGGAGGTGGATGAACAGGAAGTTGAGATCATTCCAGAACCAGAAGAACCATCTGGGCGTCCACATTaGCTCCGGCTTCCAGAAGAA +
Preference number: 2 (lower is better)
Translates to: EGEVDEQEVEIIPEPEEPSGRPH*LRLPEE
Trigger: TTCTTCTGGAAGCCGGAGGCAATGTGGACGCCCAGA...TGGTTCTTCTGGTTCTGGAATGATCTCAACTTCCTGTTCATCCACCTCCCCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR CAA 90 bp AACAAGGCTGTCGAGTTCACGGTTAGCCCTACATATAGCATGCTATaGTTCCAAGGACGTGGATTCGAGGGAGAGAGAGACAGGGACAGA +
Preference number: 2 (lower is better)
Translates to: NKAVEFTVSPTYSML*FQGRGFEGERDRDR
Trigger: TCTGTCCCTGTCTCTCTCTCCCTCGAATCCACGTCCTTGGAACAATAGCATGCTATATGTAGGGCTAACCGTGAACTCGACAGCCTTGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
3UTR-3UTR GCA 90 bp AGGAATGGGGTTCCCAGCATTACTTTCTGCCGAAATTCCTTGTCAGCCTTCAGCGCTTGCCTTGCCTCCTaGAAATGGTTGATCATCCAC +
Preference number: 2 (lower is better)
Translates to: RNGVPSITFCRNSLSAFSACLAS*KWLIIH
Trigger: GTGGATGATCAACCATTTGCAGGAGGCAAGGCAAGC...GCTGAAGGCTGACAAGGAATTTCGGCAGAAAGTAATGCTGGGAACCCCATTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000218895.2
ENSMUST00000220247.2
3UTR-3UTR GCA 90 bp GGGAGCATGTGGCGATCTGAGTTATGTATGTCCAAAACCCATCCTTGGTGTACGTCGCTATACAGCGGTTaGACACACCACAGTGTTTGG +
Preference number: 2 (lower is better)
Translates to: GSMWRSELCMSKTHPWCTSLYSG*THHSVW
Trigger: CCAAACACTGTGGTGTGTGCAACCGCTGTATAGCGA...CGTACACCAAGGATGGGTTTTGGACATACATAACTCAGATCGCCACATGCTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR CAA 90 bp ATCACCAGGAATGGGGTTCCCAGCATTACTTTCTGCCGAAATTCCTaGTCAGCCTTCAGCTTTCTGAGGAAGGATGGGTTGTCATACCCT +
Preference number: 2 (lower is better)
Translates to: ITRNGVPSITFCRNS*SAFSFLRKDGLSYP
Trigger: AGGGTATGACAACCCATCCTTCCTCAGAAAGCTGAAGGCTGACAAGGAATTTCGGCAGAAAGTAATGCTGGGAACCCCATTCCTGGTGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000218895.2
ENSMUST00000220247.2
3UTR-3UTR GCA 90 bp CAGCATTACTTTCTGCCGAAATTCCTTGTCAGCCTTCAGCTTTCTGAGGAAGGAAGAATATCCTGCAGTTaGCTCGGTCCAGCTGAGCAC +
Preference number: 2 (lower is better)
Translates to: QHYFLPKFLVSLQLSEEGRISCS*LGPAEH
Trigger: GTGCTCAGCTGGACCGAGGCAACTGCAGGATATTCT...TCCTTCCTCAGAAAGCTGAAGGCTGACAAGGAATTTCGGCAGAAAGTAATGCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218895.2
3UTR-3UTR CCA 90 bp TTCGAGGGAGAGAGAGACAGGGACAGACGCAATCCTCAGGCACCACTCAGTAACTGTAAACAATATTCATaGAAGCAGTGGCAAGTCGAC +
Preference number: 2 (lower is better)
Translates to: FEGERDRDRRNPQAPLSNCKQYS*KQWQVD
Trigger: GTCGACTTGCCACTGCTTCCATGAATATTGTTTACA...GTTACTGAGTGGTGCCTGAGGATTGCGTCTGTCCCTGTCTCTCTCTCCCTCGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
3UTR CAA 90 bp ATTGCTTTAATACCTGTAGCCAGCAATTTACAGGGAATCCTAAGTTaGCCTAGCACTGGACATGCAGTGAACTTGCAGGGGCGAGTGCCT +
Preference number: 2 (lower is better)
Translates to: IALIPVASNLQGILS*PSTGHAVNLQGRVP
Trigger: AGGCACTCGCCCCTGCAAGTTCACTGCATGTCCAGTGCTAGGCAAACTTAGGATTCCCTGTAAATTGCTGGCTACAGGTATTAAAGCAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
3UTR-3UTR TCA 90 bp GACCCTGAGGGTGTGGAAACGCTGCAACACAACGTGATCAGTGCATCACATTTAAACAGTAAGATCTGCTaGGAAGGCTTCAGAAAGGGT +
Preference number: 2 (lower is better)
Translates to: DPEGVETLQHNVISASHLNSKIC*EGFRKG
Trigger: ACCCTTTCTGAAGCCTTCTCAGCAGATCTTACTGTT...TAAATGTGATGCACTGATCACGTTGTGTTGCAGCGTTTCCACACCCTCAGGGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
3UTR-3UTR GCA 90 bp GAGTCTCCCTGTAAACAATATTCATGGAAGCAGTGGCAAGTCGACCCTGAGGGTGACTTGGAAAGAAATTaGACTGTAGCCCAAACGCCA +
Preference number: 2 (lower is better)
Translates to: ESPCKQYSWKQWQVDPEGDLERN*TVAQTP
Trigger: TGGCGTTTGGGCTACAGTGCAATTTCTTTCCAAGTC...ACCCTCAGGGTCGACTTGCCACTGCTTCCATGAATATTGTTTACAGGGAGACTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR-3UTR CCA 90 bp CAGCCAGATCACCAGGAATGGGGTTCCCAGCATTACTTTCTGCCGAAATTCCTTCTTGCCTCCTGCAAATaGTTGATCATCCACACGTTT +
Preference number: 2 (lower is better)
Translates to: QPDHQEWGSQHYFLPKFLLASCK*LIIHTF
Trigger: AAACGTGTGGATGATCAACCATTTGCAGGAGGCAAG...AAGGAATTTCGGCAGAAAGTAATGCTGGGAACCCCATTCCTGGTGATCTGGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000218895.2
ENSMUST00000220247.2
3UTR-3UTR CCA 90 bp GAAACGCTGCAACACAACGTGATCAGTGCATCACATTTAACAGTAAGATCTGCTCATCCTTGGTGTACGTaGTCTCACAGTGAAGGCCCC +
Preference number: 2 (lower is better)
Translates to: ETLQHNVISASHLTVRSAHPWCT*SHSEGP
Trigger: GGGGCCTTCACTGTGAGACCACGTACACCAAGGATG...AGCAGATCTTACTGTTAAATGTGATGCACTGATCACGTTGTGTTGCAGCGTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR-3UTR TCA 90 bp GACCCTGAGGGTGTGGAAACGCTGCAACACAACGTGATCAGTGCATCACATTTAAAGCATCTCTTGCACTaGAAGGATACTGTACCACAA +
Preference number: 2 (lower is better)
Translates to: DPEGVETLQHNVISASHLKHLLH*KDTVPQ
Trigger: TTGTGGTACAGTATCCTTTCAGTGCAAGAGATGCTT...TAAATGTGATGCACTGATCACGTTGTGTTGCAGCGTTTCCACACCCTCAGGGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
3UTR-3UTR TCA 90 bp AAATATATCCCAAGGGGCAATGCGCTGTGCATTGAATGGTCAAAGAAGGACTTGCAGCCTTCAGCTTTCTaGGGAAGGATGGGTTGTCAT +
Preference number: 2 (lower is better)
Translates to: KYIPRGNALCIEWSKKDLQPSAF*GRMGCH
Trigger: ATGACAACCCATCCTTCCTCAGAAAGCTGAAGGCTG...CAAGTCCTTCTTTGACCATTCAATGCACAGCGCATTGCCCCTTGGGATATATTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000218895.2
ENSMUST00000220247.2
3UTR-3UTR GCA 90 bp AACCCTTTAATGAGCCAAGAATCAATGTCTAGGTCTGCTATAAACCCGACCAGCCCCTTTCGCTTGCCTTaGCTCCTGCAAATGGTTGAT +
Preference number: 2 (lower is better)
Translates to: NPLMSQESMSRSAINPTSPFRLP*LLQMVD
Trigger: ATCAACCATTTGCAGGAGGCAAGGCAAGCGAAAGGG...GCTGGTCGGGTTTATAGCAGACCTAGACATTGATTCTTGGCTCATTAAAGGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000218895.2
ENSMUST00000220247.2
3UTR-3UTR GCA 90 bp TCTCCCTGTAAACAATATTCATGGAAGCAGTGGCAAGTCGACCCTGAGGGTGTGCATCCAGAATTTGGTTaGCAAATATATCCCAAGGGG +
Preference number: 2 (lower is better)
Translates to: SPCKQYSWKQWQVDPEGVHPEFG*QIYPKG
Trigger: CCCCTTGGGATATATTTGGCAACCAAATTCTGGATG...CACACCCTCAGGGTCGACTTGCCACTGCTTCCATGAATATTGTTTACAGGGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR-3UTR CCA 90 bp TCTCCCTGTAAACAATATTCATGGAAGCAGTGGCAAGTCGACCCTGAGGGTGTGACAGTTACCCACCCATaGGCAATGGTGATCAAATTT +
Preference number: 2 (lower is better)
Translates to: SPCKQYSWKQWQVDPEGVTVTHP*AMVIKF
Trigger: AAATTTGATCACCATTGCCCATGGGTGGGTAACTGT...CACACCCTCAGGGTCGACTTGCCACTGCTTCCATGAATATTGTTTACAGGGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR CAA 90 bp CATTCCAGAACCAGAAGAACCATGTCACATACATCCAGAATTTGGTaGCCAAATATATCCCAAGGGGCAATGCGCTGTGCATTGAATGGT +
Preference number: 2 (lower is better)
Translates to: HSRTRRTMSHTSRIW*PNISQGAMRCALNG
Trigger: ACCATTCAATGCACAGCGCATTGCCCCTTGGGATATATTTGGCAACCAAATTCTGGATGTATGTGACATGGTTCTTCTGGTTCTGGAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000218895.2
ENSMUST00000220247.2
3UTR-3UTR TCA 90 bp CAGAGTCTCCCTGTAAACAATATTCATGGAAGCAGTGGCAAGTCGACCCTGAGGCATTCTTACTCAAACTaGGAAAACCATCGTACTCTA +
Preference number: 2 (lower is better)
Translates to: QSLPVNNIHGSSGKSTLRHSYSN*ENHRTL
Trigger: TAGAGTACGATGGTTTTCTCAGTTTGAGTAAGAATG...CCTCAGGGTCGACTTGCCACTGCTTCCATGAATATTGTTTACAGGGAGACTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
3UTR-3UTR GCA 90 bp GAACCAGAAGAACCATGTCACATACATCCAGAATTTGGTTGCCAAATATATCCCCCCTTTCGCTTGCCTTaGCTCCTGCAAATGGTTGAT +
Preference number: 2 (lower is better)
Translates to: EPEEPCHIHPEFGCQIYPPFRLP*LLQMVD
Trigger: ATCAACCATTTGCAGGAGGCAAGGCAAGCGAAAGGG...GGGATATATTTGGCAACCAAATTCTGGATGTATGTGACATGGTTCTTCTGGTTC
44% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000218895.2
ENSMUST00000220247.2
3UTR CAA 90 bp TCTTCTCTTCCTAGGCGTGGCAGTGTGTTCTGTCTATGTTTGCTTTaGTTAATAAAAGTACTGAACAAGGCTGTCGAGTTCACGGTTAGC +
Preference number: 2 (lower is better)
Translates to: SSLPRRGSVFCLCLL*LIKVLNKAVEFTVS
Trigger: GCTAACCGTGAACTCGACAGCCTTGTTCAGTACTTTTATTAACAAAAGCAAACATAGACAGAACACACTGCCACGCCTAGGAAGAGAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
3UTR CAA 90 bp AGATCATTCCAGAACCAGAAGAACCATGTCACATACATCCAGAATTaGGTTGCCAAATATATCCCAAGGGGCAATGCGCTGTGCATTGAA +
Preference number: 2 (lower is better)
Translates to: RSFQNQKNHVTYIQN*VAKYIPRGNALCIE
Trigger: TTCAATGCACAGCGCATTGCCCCTTGGGATATATTTGGCAACCAAATTCTGGATGTATGTGACATGGTTCTTCTGGTTCTGGAATGATCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR-3UTR GCA 90 bp GAAACGCTGCAACACAACGTGATCAGTGCATCACATTTAACAGTAAGATCTGCTTATGTACAGAGGTCATaGCCCATCTTTAGCCTAGAC +
Preference number: 2 (lower is better)
Translates to: ETLQHNVISASHLTVRSAYVQRS*PIFSLD
Trigger: GTCTAGGCTAAAGATGGGGCATGACCTCTGTACATA...AGCAGATCTTACTGTTAAATGTGATGCACTGATCACGTTGTGTTGCAGCGTTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
3UTR-3UTR GCA 90 bp GTCCACGATAACAGGACGAAAGAGGCCACAGCATCGAAATTCAAAGAAGTCTATCAGACTTCCAGTCTCTaGAAGTTCAACTATCGTCTT +
Preference number: 2 (lower is better)
Translates to: VHDNRTKEATASKFKEVYQTSSL*KFNYRL
Trigger: AAGACGATAGTTGAACTTGCAGAGACTGGAAGTCTG...ATAGACTTCTTTGAATTTCGATGCTGTGGCCTCTTTCGTCCTGTTATCGTGGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR-3UTR TCA 90 bp GTGGAGGTGACTTACGGTCACAGAGATTACTATAAAATGGTAGTACTTGGAAACGAGCATGTGGCGATCTaGGTTATGTATGTCCAAAAC +
Preference number: 2 (lower is better)
Translates to: VEVTYGHRDYYKMVVLGNEHVAI*VMYVQN
Trigger: GTTTTGGACATACATAACTCAGATCGCCACATGCTC...GTTTCCAAGTACTACCATTTTATAGTAATCTCTGTGACCGTAAGTCACCTCCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR-3UTR CCA 90 bp ATTTATATACAGATACACAGTCTTTACACTGGTCTAGGATGTCAGTCTGACCCCTGCTGCTACACAAGCTaGTACCCAGATCCTGATATT +
Preference number: 2 (lower is better)
Translates to: IYIQIHSLYTGLGCQSDPCCYTS*YPDPDI
Trigger: AATATCAGGATCTGGGTACCAGCTTGTGTAGCAGCA...GGGGTCAGACTGACATCCTAGACCAGTGTAAAGACTGTGTATCTGTATATAAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR-3UTR TCA 90 bp ACCAGAAGAACCATGTCACATACATCCAGAATTTGGTTGCCAAATATATCCCAATGCCAAATCAAGTGCTaGCTCACCCTGAATAATAGC +
Preference number: 2 (lower is better)
Translates to: TRRTMSHTSRIWLPNISQCQIKC*LTLNNS
Trigger: GCTATTATTCAGGGTGAGTCAGCACTTGATTTGGCA...TTGGGATATATTTGGCAACCAAATTCTGGATGTATGTGACATGGTTCTTCTGGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218895.2
3UTR-3UTR GCA 90 bp CATTTAACAGTAAGATCTGCTGAGAAGGCTTCAGAAAGGGTTACCAATGTCAAAGACAAAATGGTACAATaGTATTACCACCCCACACCC +
Preference number: 2 (lower is better)
Translates to: HLTVRSAEKASERVTNVKDKMVQ*YYHPTP
Trigger: GGGTGTGGGGTGGTAATAGCATTGTACCATTTTGTC...TTTGACATTGGTAACCCTTTCTGAAGCCTTCTCAGCAGATCTTACTGTTAAATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
3UTR-3UTR CCA 90 bp CCACCATACATTAACCCTTTAATGAGCCAAGAATCAATGTCTAGGTCTGCTATACTTGCCTCCTGCAAATaGTTGATCATCCACACGTTT +
Preference number: 2 (lower is better)
Translates to: PPYINPLMSQESMSRSAILASCK*LIIHTF
Trigger: AAACGTGTGGATGATCAACCATTTGCAGGAGGCAAG...TATAGCAGACCTAGACATTGATTCTTGGCTCATTAAAGGGTTAATGTATGGTGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000218895.2
ENSMUST00000220247.2
3UTR-3UTR CCA 90 bp CAGAACCAGAAGAACCATGTCACATACATCCAGAATTTGGTTGCCAAATATATCGCGCTGTGCATTGAATaGTCAAAGAAGGACTTGGAA +
Preference number: 2 (lower is better)
Translates to: QNQKNHVTYIQNLVAKYIALCIE*SKKDLE
Trigger: TTCCAAGTCCTTCTTTGACCATTCAATGCACAGCGC...GATATATTTGGCAACCAAATTCTGGATGTATGTGACATGGTTCTTCTGGTTCTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000218895.2
ENSMUST00000220247.2
3UTR-3UTR TCA 90 bp CATTTAACAGTAAGATCTGCTGAGAAGGCTTCAGAAAGGGTTACCAATGTCAAAAGTACTTGGAAACACTaGGCATCAACTATGTACATG +
Preference number: 2 (lower is better)
Translates to: HLTVRSAEKASERVTNVKSTWKH*ASTMYM
Trigger: CATGTACATAGTTGATGCTCAGTGTTTCCAAGTACT...TTTGACATTGGTAACCCTTTCTGAAGCCTTCTCAGCAGATCTTACTGTTAAATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
3UTR-3UTR TCA 90 bp GTTATTTATATACAGATACACAGTCTTTACACTGGTCTAGGATGTCAGTCTGACTCATCCAGCAGATCATaGAAAGCAAGAAGAACAGGT +
Preference number: 2 (lower is better)
Translates to: VIYIQIHSLYTGLGCQSDSSSRS*KARRTG
Trigger: ACCTGTTCTTCTTGCTTTTCATGATCTGCTGGATGA...GTCAGACTGACATCCTAGACCAGTGTAAAGACTGTGTATCTGTATATAAATAAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR-3UTR GCA 90 bp GAAACGCTGCAACACAACGTGATCAGTGCATCACATTTAACAGTAAGATCTGCTAACACTCTTAAGTACTaGATAATACAATGTAGCCGT +
Preference number: 2 (lower is better)
Translates to: ETLQHNVISASHLTVRSANTLKY*IIQCSR
Trigger: ACGGCTACATTGTATTATGCAGTACTTAAGAGTGTT...AGCAGATCTTACTGTTAAATGTGATGCACTGATCACGTTGTGTTGCAGCGTTTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
3UTR CAA 90 bp TGGTTGAATGGGCTTTCAATAGATGTTGTCGTAACTTTAAAGTGCTaGTATCTCCTGGCGTTCATTCTTTCATTTGTAGTAATACCTAAA +
Preference number: 2 (lower is better)
Translates to: WLNGLSIDVVVTLKC*YLLAFILSFVVIPK
Trigger: TTTAGGTATTACTACAAATGAAAGAATGAACGCCAGGAGATACAAGCACTTTAAAGTTACGACAACATCTATTGAAAGCCCATTCAACCA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR TCA 72 bp CAGAGCCGGCGGCTACACAAGAGCGAGCCGCTTCCATaGACATTATTCCCCGTGCCTTTGGGGACACAGTAC +
Preference number: 3 (lower is better)
Translates to: QSRRLHKSEPLP*TLFPVPLGTQY
Trigger: GTACTGTGTCCCCAAAGGCACGGGGAATAATGTTCATGGAAGCGGCTCGCTCTTGTGTAGCCGCCGGCTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
3UTR TCA 72 bp GATACACAGTCTTTACACTGGTCTAGGATGTCAGTCTaGCCCCGCCCCCAGTCCCTCCCACAGGTTGCGAAC +
Preference number: 3 (lower is better)
Translates to: DTQSLHWSRMSV*PRPQSLPQVAN
Trigger: GTTCGCAACCTGTGGGAGGGACTGGGGGCGGGGTCAGACTGACATCCTAGACCAGTGTAAAGACTGTGTATC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
3UTR CCA 72 bp GCAATCCTCAGGCACCACTCAGTAACACTGAGTTCCTaGCATCCGGACGCTGCTGCTACACAAGCTGGTACC +
Preference number: 3 (lower is better)
Translates to: AILRHHSVTLSS*HPDAAATQAGT
Trigger: GGTACCAGCTTGTGTAGCAGCAGCGTCCGGATGCCAGGAACTCAGTGTTACTGAGTGGTGCCTGAGGATTGC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR TCA 72 bp GCAGCACGGCCACCCACAGGAAGTGAAACACACTGTTaGGAAACATCCAGAACATCCACGGGGAGCATGTGG +
Preference number: 3 (lower is better)
Translates to: AARPPTGSETHC*ETSRTSTGSMW
Trigger: CCACATGCTCCCCGTGGATGTTCTGGATGTTTCTCAACAGTGTGTTTCACTTCCTGTGGGTGGCCGTGCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR CCA 72 bp GCCCCCAGTCCCTCCCACAGGTTGCGAACCACAGTTTaGATGAGGGCTAACCAGAGTCTCCCTGTAAACAAT +
Preference number: 3 (lower is better)
Translates to: APSPSHRLRTTV*MRANQSLPVNN
Trigger: ATTGTTTACAGGGAGACTCTGGTTAGCCCTCATCCAAACTGTGGTTCGCAACCTGTGGGAGGGACTGGGGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
3UTR-3UTR CAA 90 bp ACTGAGCATCAACTATGTACATGTCCGCTGCTCCTCCTCCTAAGGCAGGGCGGGTTCGCTATACAGCGGTaGCACACACCACAGTGTTTG +
Preference number: 3 (lower is better)
Translates to: TEHQLCTCPLLLLLRQGGFAIQR*HTPQCL
Trigger: CAAACACTGTGGTGTGTGCAACCGCTGTATAGCGAA...CCCGCCCTGCCTTAGGAGGAGGAGCAGCGGACATGTACATAGTTGATGCTCAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR CCA 72 bp TTCCAGACTCGCGGAGACCCAAACAAGCCGTCAGTCTaGAACGCATCTCCTTGCCAATATCTTCCGTGGAGT +
Preference number: 3 (lower is better)
Translates to: FQTRGDPNKPSV*NASPCQYLPWS
Trigger: ACTCCACGGAAGATATTGGCAAGGAGATGCGTTCCAGACTGACGGCTTGTTTGGGTCTCCGCGAGTCTGGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
3UTR-3UTR CAA 90 bp GGAAACACTGAGCATCAACTATGTACATGTCCGCTGCTCCTCCTCCTAAGGCAGAGTCCCTCCCACAGGTaGCGAACCACAGTTTGGATG +
Preference number: 3 (lower is better)
Translates to: GNTEHQLCTCPLLLLLRQSPSHR*RTTVWM
Trigger: CATCCAAACTGTGGTTCGCAACCTGTGGGAGGGACT...CTGCCTTAGGAGGAGGAGCAGCGGACATGTACATAGTTGATGCTCAGTGTTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
3UTR-3UTR CAA 90 bp ATTGTTCCAAGGACGTGGATTCGAGGGAGAGAGAGACAGGGACAGACGCAATCCGTCCAAAACCCATCCTaGGTGTACGTGGTCTCACAG +
Preference number: 3 (lower is better)
Translates to: IVPRTWIRGRERQGQTQSVQNPS*VYVVSQ
Trigger: CTGTGAGACCACGTACACCAAGGATGGGTTTTGGAC...GGATTGCGTCTGTCCCTGTCTCTCTCTCCCTCGAATCCACGTCCTTGGAACAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR TCA 72 bp TTCTTTGCTTTGCCAAATCAAGTGCTGACTCACCCTTaGCGTTCTGGGCGTCCACATTGCCTCCGGCTTCCA +
Preference number: 3 (lower is better)
Translates to: FFALPNQVLTHP*RSGRPHCLRLP
Trigger: TGGAAGCCGGAGGCAATGTGGACGCCCAGAACGTCAAGGGTGAGTCAGCACTTGATTTGGCAAAGCAAAGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR-3UTR CAA 90 bp CAGGAATGGGGTTCCCAGCATTACTTTCTGCCGAAATTCCTTGTCAGCCTTCAGCTGAGGAAGGATGGGTaGTCATACCCTTTCGCTTGC +
Preference number: 3 (lower is better)
Translates to: QEWGSQHYFLPKFLVSLQLRKDG*SYPFAC
Trigger: GCAAGCGAAAGGGTATGACAACCCATCCTTCCTCAG...CTGAAGGCTGACAAGGAATTTCGGCAGAAAGTAATGCTGGGAACCCCATTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000218895.2
ENSMUST00000220247.2
3UTR-3UTR CAA 90 bp ATTGTTCCAAGGACGTGGATTCGAGGGAGAGAGAGACAGGGACAGACGCAATCCTTCTGCCGAAATTCCTaGTCAGCCTTCAGCTTTCTG +
Preference number: 3 (lower is better)
Translates to: IVPRTWIRGRERQGQTQSFCRNS*SAFSFL
Trigger: CAGAAAGCTGAAGGCTGACAAGGAATTTCGGCAGAA...GGATTGCGTCTGTCCCTGTCTCTCTCTCCCTCGAATCCACGTCCTTGGAACAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR TCA 72 bp CCTGCACCTACACAGTTACCCACCCATGGGCAATGGTaGTCAAATTTCGCTATACAGCGGTTGCACACACCA +
Preference number: 3 (lower is better)
Translates to: PAPTQLPTHGQW*SNFAIQRLHTP
Trigger: TGGTGTGTGCAACCGCTGTATAGCGAAATTTGATCACCATTGCCCATGGGTGGGTAACTGTGTAGGTGCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR CCA 72 bp CCAGAGTCTCCCTGTAAACAATATTCATGGAAGCAGTaGCAAGTCGACCCTGAGGGTGTGGAAACGCTGCAA +
Preference number: 3 (lower is better)
Translates to: PESPCKQYSWKQ*QVDPEGVETLQ
Trigger: TTGCAGCGTTTCCACACCCTCAGGGTCGACTTGCCACTGCTTCCATGAATATTGTTTACAGGGAGACTCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
3UTR CCA 72 bp ATTTCGCTATACAGCGGTTGCACACACCACAGTGTTTaGACCTCACTGGCTTCCGAATCAAGCAGGTACTGC +
Preference number: 3 (lower is better)
Translates to: ISLYSGCTHHSV*TSLASESSRYC
Trigger: GCAGTACCTGCTTGATTCGGAAGCCAGTGAGGTCCAAACACTGTGGTGTGTGCAACCGCTGTATAGCGAAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR-3UTR CAA 90 bp AGGTGGATGAACAGGAAGTTGAGATCATTCCAGAACCAGAAGAACCATGTCACATTCTGGGCGTCCACATaGCCTCCGGCTTCCAGAAGA +
Preference number: 3 (lower is better)
Translates to: RWMNRKLRSFQNQKNHVTFWAST*PPASRR
Trigger: TCTTCTGGAAGCCGGAGGCAATGTGGACGCCCAGAA...TGTGACATGGTTCTTCTGGTTCTGGAATGATCTCAACTTCCTGTTCATCCACCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR TCA 72 bp CTTTCTGCCGAAATTCCTTGTCAGCCTTCAGCTTTCTaGGGAAGGATGGGTTGTCATACCCTTTCGCTTGCC +
Preference number: 3 (lower is better)
Translates to: LSAEIPCQPSAF*GRMGCHTLSLA
Trigger: GGCAAGCGAAAGGGTATGACAACCCATCCTTCCTCAGAAAGCTGAAGGCTGACAAGGAATTTCGGCAGAAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000218895.2
ENSMUST00000220247.2
3UTR GCA 72 bp AGGCTGTCGAGTTCACGGTTAGCCCTACATATAGCATaGTATTGTTCCAAGGACGTGGATTCGAGGGAGAGA +
Preference number: 3 (lower is better)
Translates to: RLSSSRLALHIA*YCSKDVDSRER
Trigger: TCTCTCCCTCGAATCCACGTCCTTGGAACAATAGCATGCTATATGTAGGGCTAACCGTGAACTCGACAGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
3UTR GCA 72 bp TTTCTGAGGAAGGATGGGTTGTCATACCCTTTCGCTTaGCTTGCCTCCTGCAAATGGTTGATCATCCACACG +
Preference number: 3 (lower is better)
Translates to: FLRKDGLSYPFA*LASCKWLIIHT
Trigger: CGTGTGGATGATCAACCATTTGCAGGAGGCAAGGCAAGCGAAAGGGTATGACAACCCATCCTTCCTCAGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000218895.2
ENSMUST00000220247.2
3UTR GCA 72 bp CAGATCACCAGGAATGGGGTTCCCAGCATTACTTTCTaGCGAAATTCCTTGTCAGCCTTCAGCTTTCTGAGG +
Preference number: 3 (lower is better)
Translates to: QITRNGVPSITF*RNSLSAFSFLR
Trigger: CCTCAGAAAGCTGAAGGCTGACAAGGAATTTCGGCAGAAAGTAATGCTGGGAACCCCATTCCTGGTGATCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000218895.2
ENSMUST00000220247.2
3UTR CCA 72 bp GTCTGCTATAAACCCGACCAGCCAGATCACCAGGAATaGGGTTCCCAGCATTACTTTCTGCCGAAATTCCTT +
Preference number: 3 (lower is better)
Translates to: VCYKPDQPDHQE*GSQHYFLPKFL
Trigger: AAGGAATTTCGGCAGAAAGTAATGCTGGGAACCCCATTCCTGGTGATCTGGCTGGTCGGGTTTATAGCAGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000218895.2
ENSMUST00000220247.2
3UTR CCA 72 bp ACAGCGGTTGCACACACCACAGTGTTTGGACCTCACTaGCTTCCGAATCAAGCAGGTACTGCAGAATATACT +
Preference number: 3 (lower is better)
Translates to: TAVAHTTVFGPH*LPNQAGTAEYT
Trigger: AGTATATTCTGCAGTACCTGCTTGATTCGGAAGCCAGTGAGGTCCAAACACTGTGGTGTGTGCAACCGCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR CCA 72 bp TGGCGATCTGAGTTATGTATGTCCAAAACCCATCCTTaGTGTACGTGGTCTCACAGTGAAGGCCCCAGTAAG +
Preference number: 3 (lower is better)
Translates to: WRSELCMSKTHP*CTWSHSEGPSK
Trigger: CTTACTGGGGCCTTCACTGTGAGACCACGTACACCAAGGATGGGTTTTGGACATACATAACTCAGATCGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR-3UTR CAA 90 bp ATCCTGTTCCAGACTCGCGGAGACCCAAACAAGCCGTCAGTCTGGAACGCATCTATCTCCCTTTGCTTTTaGGTTGGACAAAATGAACTG +
Preference number: 3 (lower is better)
Translates to: ILFQTRGDPNKPSVWNASISLCF*VGQNEL
Trigger: CAGTTCATTTTGTCCAACCAAAAAGCAAAGGGAGAT...AGATGCGTTCCAGACTGACGGCTTGTTTGGGTCTCCGCGAGTCTGGAACAGGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
3UTR TCA 72 bp AACATCCAGAACATCCACGGGGAGCATGTGGCGATCTaGGTTATGTATGTCCAAAACCCATCCTTGGTGTAC +
Preference number: 3 (lower is better)
Translates to: NIQNIHGEHVAI*VMYVQNPSLVY
Trigger: GTACACCAAGGATGGGTTTTGGACATACATAACTCAGATCGCCACATGCTCCCCGTGGATGTTCTGGATGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR TCA 72 bp CGGACGCTGCTGCTACACAAGCTGGTACCCAGATCCTaGTATTTGGTCATATTCTATAGTGTACTGCCTGGT +
Preference number: 3 (lower is better)
Translates to: RTLLLHKLVPRS*YLVIFYSVLPG
Trigger: ACCAGGCAGTACACTATAGAATATGACCAAATATCAGGATCTGGGTACCAGCTTGTGTAGCAGCAGCGTCCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR GCA 72 bp GAGGAAGGATGGGTTGTCATACCCTTTCGCTTGCCTTaGCTCCTGCAAATGGTTGATCATCCACACGTTTTT +
Preference number: 3 (lower is better)
Translates to: EEGWVVIPFRLP*LLQMVDHPHVF
Trigger: AAAAACGTGTGGATGATCAACCATTTGCAGGAGGCAAGGCAAGCGAAAGGGTATGACAACCCATCCTTCCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000218895.2
ENSMUST00000220247.2
3UTR CCA 72 bp GAGTTATGTATGTCCAAAACCCATCCTTGGTGTACGTaGTCTCACAGTGAAGGCCCCAGTAAGAGACACAAC +
Preference number: 3 (lower is better)
Translates to: ELCMSKTHPWCT*SHSEGPSKRHN
Trigger: GTTGTGTCTCTTACTGGGGCCTTCACTGTGAGACCACGTACACCAAGGATGGGTTTTGGACATACATAACTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR CCA 72 bp GAGTTCCTGGCATCCGGACGCTGCTGCTACACAAGCTaGTACCCAGATCCTGATATTTGGTCATATTCTATA +
Preference number: 3 (lower is better)
Translates to: EFLASGRCCYTS*YPDPDIWSYSI
Trigger: TATAGAATATGACCAAATATCAGGATCTGGGTACCAGCTTGTGTAGCAGCAGCGTCCGGATGCCAGGAACTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR TCA 72 bp CTGGCTTCCGAATCAAGCAGGTACTGCAGAATATACTaGGGTCCAGACTTCCAGTCTCTGCAAGTTCAACTA +
Preference number: 3 (lower is better)
Translates to: LASESSRYCRIY*GPDFQSLQVQL
Trigger: TAGTTGAACTTGCAGAGACTGGAAGTCTGGACCTCAGTATATTCTGCAGTACCTGCTTGATTCGGAAGCCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR-3UTR CAA 90 bp GTGGAGGTGACTTACGGTCACAGAGATTACTATAAAATGGTAGTACTTGGAAACCTGAGGAAGGATGGGTaGTCATACCCTTTCGCTTGC +
Preference number: 3 (lower is better)
Translates to: VEVTYGHRDYYKMVVLGNLRKDG*SYPFAC
Trigger: GCAAGCGAAAGGGTATGACAACCCATCCTTCCTCAG...GTTTCCAAGTACTACCATTTTATAGTAATCTCTGTGACCGTAAGTCACCTCCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR TCA 72 bp GGGGTTGCCTGCTTTACGGAGAAGCATCTCTTGCACTaGAAGGATACTGTACCACAAAGAAAGAACATGGTA +
Preference number: 3 (lower is better)
Translates to: GVACFTEKHLLH*KDTVPQRKNMV
Trigger: TACCATGTTCTTTCTTTGTGGTACAGTATCCTTTCAGTGCAAGAGATGCTTCTCCGTAAAGCAGGCAACCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
3UTR GCA 72 bp CTACAGGGGTTGCCTGCTTTACGGAGAAGCATCTCTTaGACTGAAAGGATACTGTACCACAAAGAAAGAACA +
Preference number: 3 (lower is better)
Translates to: LQGLPALRRSIS*TERILYHKERT
Trigger: TGTTCTTTCTTTGTGGTACAGTATCCTTTCAGTGCAAGAGATGCTTCTCCGTAAAGCAGGCAACCCCTGTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
3UTR GCA 72 bp CCAGATCCTGATATTTGGTCATATTCTATAGTGTACTaGCTGGTCCAGTCCACGATAACAGGACGAAAGAGG +
Preference number: 3 (lower is better)
Translates to: PDPDIWSYSIVY*LVQSTITGRKR
Trigger: CCTCTTTCGTCCTGTTATCGTGGACTGGACCAGGCAGTACACTATAGAATATGACCAAATATCAGGATCTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR TCA 72 bp TGCCAAATATATCCCAAGGGGCAATGCGCTGTGCATTaGATGGTCAAAGAAGGACTTGGAAAGAAATTGCAC +
Preference number: 3 (lower is better)
Translates to: CQIYPKGQCAVH*MVKEGLGKKLH
Trigger: GTGCAATTTCTTTCCAAGTCCTTCTTTGACCATTCAATGCACAGCGCATTGCCCCTTGGGATATATTTGGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000218895.2
ENSMUST00000220247.2
3UTR-3UTR CAA 90 bp CATTTAACAGTAAGATCTGCTGAGAAGGCTTCAGAAAGGGTTACCAATGTCAAACAGGGAATCCTAAGTTaGCCTAGCACTGGACATGCA +
Preference number: 3 (lower is better)
Translates to: HLTVRSAEKASERVTNVKQGILS*PSTGHA
Trigger: TGCATGTCCAGTGCTAGGCAAACTTAGGATTCCCTG...TTTGACATTGGTAACCCTTTCTGAAGCCTTCTCAGCAGATCTTACTGTTAAATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
3UTR-3UTR CAA 90 bp GTCCACGATAACAGGACGAAAGAGGCCACAGCATCGAAATTCAAAGAAGTCTATACATCCAGAATTTGGTaGCCAAATATATCCCAAGGG +
Preference number: 3 (lower is better)
Translates to: VHDNRTKEATASKFKEVYTSRIW*PNISQG
Trigger: CCCTTGGGATATATTTGGCAACCAAATTCTGGATGT...ATAGACTTCTTTGAATTTCGATGCTGTGGCCTCTTTCGTCCTGTTATCGTGGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
3UTR GCA 72 bp ATGGAACGTCACGAGAAGCTCATTCATATCTCCCTTTaGTTTTTGGTTGGACAAAATGAACTGAGCAGCTGT +
Preference number: 3 (lower is better)
Translates to: MERHEKLIHISL*FLVGQNELSSC
Trigger: ACAGCTGCTCAGTTCATTTTGTCCAACCAAAAAGCAAAGGGAGATATGAATGAGCTTCTCGTGACGTTCCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
3UTR GCA 72 bp TTGGTTGCCAAATATATCCCAAGGGGCAATGCGCTGTaGATTGAATGGTCAAAGAAGGACTTGGAAAGAAAT +
Preference number: 3 (lower is better)
Translates to: LVAKYIPRGNAL*IEWSKKDLERN
Trigger: ATTTCTTTCCAAGTCCTTCTTTGACCATTCAATGCACAGCGCATTGCCCCTTGGGATATATTTGGCAACCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000218895.2
ENSMUST00000220247.2
3UTR-3UTR CAA 90 bp TACATTAACCCTTTAATGAGCCAAGAATCAATGTCTAGGTCTGCTATAAACCCGTTCTGCCGAAATTCCTaGTCAGCCTTCAGCTTTCTG +
Preference number: 3 (lower is better)
Translates to: YINPLMSQESMSRSAINPFCRNS*SAFSFL
Trigger: CAGAAAGCTGAAGGCTGACAAGGAATTTCGGCAGAA...CGGGTTTATAGCAGACCTAGACATTGATTCTTGGCTCATTAAAGGGTTAATGTA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000218895.2
ENSMUST00000220247.2
3UTR TCA 72 bp CGTGATCAGTGCATCACATTTAACAGTAAGATCTGCTaGGAAGGCTTCAGAAAGGGTTACCAATGTCAAAAC +
Preference number: 3 (lower is better)
Translates to: RDQCITFNSKIC*EGFRKGYQCQN
Trigger: GTTTTGACATTGGTAACCCTTTCTGAAGCCTTCTCAGCAGATCTTACTGTTAAATGTGATGCACTGATCACG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
3UTR CCA 72 bp AAATATATCCCAAGGGGCAATGCGCTGTGCATTGAATaGTCAAAGAAGGACTTGGAAAGAAATTGCACTGTA +
Preference number: 3 (lower is better)
Translates to: KYIPRGNALCIE*SKKDLERNCTV
Trigger: TACAGTGCAATTTCTTTCCAAGTCCTTCTTTGACCATTCAATGCACAGCGCATTGCCCCTTGGGATATATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000218895.2
ENSMUST00000220247.2
3UTR GCA 72 bp TTTTCAGTTATTCACATGTGCTATGTACAGAGGTCATaGCCCATCTTTAGCCTAGACGCCATTATTTTGTCT +
Preference number: 3 (lower is better)
Translates to: FSVIHMCYVQRS*PIFSLDAIILS
Trigger: AGACAAAATAATGGCGTCTAGGCTAAAGATGGGGCATGACCTCTGTACATAGCACATGTGAATAACTGAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
3UTR TCA 72 bp TTAGTATACTCATGCAAGTGCTTTATTTTCAGACCGTaGGACCCCAGAGCAAGGTTACTAGAAATTATCTCA +
Preference number: 3 (lower is better)
Translates to: LVYSCKCFIFRP*DPRARLLEIIS
Trigger: TGAGATAATTTCTAGTAACCTTGCTCTGGGGTCTCACGGTCTGAAAATAAAGCACTTGCATGAGTATACTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
3UTR GCA 72 bp TGGGCTGTCTTGCACATGAAATTAAATCCTAATTTATaGTTCACTGGACAGTATCTGCTAGTATACATTCTA +
Preference number: 3 (lower is better)
Translates to: WAVLHMKLNPNL*FTGQYLLVYIL
Trigger: TAGAATGTATACTAGCAGATACTGTCCAGTGAAGCATAAATTAGGATTTAATTTCATGTGCAAGACAGCCCA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
CDS-3UTR TCA 90 bp GTGGATTCGAGGGAGAGAGAGACAGGGACAGACGCAATCCTCAGGCACCACTCAGGTACAGCTGACACATaGGCAGCACGGCCACCCACA +
Preference number: 4 (lower is better)
Translates to: VDSRERETGTDAILRHHSGTADT*AARPPT
Trigger: TGTGGGTGGCCGTGCTGCTCATGTGTCAGCTGTACC...TGAGTGGTGCCTGAGGATTGCGTCTGTCCCTGTCTCTCTCTCCCTCGAATCCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
CDS-3UTR CCA 90 bp ACTGAGCATCAACTATGTACATGTCCGCTGCTCCTCCTCCTAAGGCAGGGCGGGAAAGAGCAACGCTGTTaGCAAGGAAGGGGAGGTGGA +
Preference number: 4 (lower is better)
Translates to: TEHQLCTCPLLLLLRQGGKEQRC*QGRGGG
Trigger: TCCACCTCCCCTTCCTTGCCAACAGCGTTGCTCTTT...CCCGCCCTGCCTTAGGAGGAGGAGCAGCGGACATGTACATAGTTGATGCTCAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
CDS-3UTR CCA 90 bp TTCGAGGGAGAGAGAGACAGGGACAGACGCAATCCTCAGGCACCACTCAGTAACCATCCTTGGTGTACGTaGTCTCACAGTGAAGGCCCC +
Preference number: 4 (lower is better)
Translates to: FEGERDRDRRNPQAPLSNHPWCT*SHSEGP
Trigger: GGGGCCTTCACTGTGAGACCACGTACACCAAGGATG...GTTACTGAGTGGTGCCTGAGGATTGCGTCTGTCCCTGTCTCTCTCTCCCTCGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
CDS-3UTR TCA 90 bp TTCGAGGGAGAGAGAGACAGGGACAGACGCAATCCTCAGGCACCACTCAGTAACCCAGTGCAACGGAGTTaGATTCAGGTCTCCTCCAAG +
Preference number: 4 (lower is better)
Translates to: FEGERDRDRRNPQAPLSNPVQRS*IQVSSK
Trigger: CTTGGAGGAGACCTGAATTCAACTCCGTTGCACTGG...GTTACTGAGTGGTGCCTGAGGATTGCGTCTGTCCCTGTCTCTCTCTCCCTCGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
CDS-3UTR CCA 90 bp GAGTCTCCCTGTAAACAATATTCATGGAAGCAGTGGCAAGTCGACCCTGAGGGTTTGATTTCCTCCGGGTaGAGAAGGGGCACGCAGCCC +
Preference number: 4 (lower is better)
Translates to: ESPCKQYSWKQWQVDPEGLISSG*RRGTQP
Trigger: GGGCTGCGTGCCCCTTCTCCACCCGGAGGAAATCAA...ACCCTCAGGGTCGACTTGCCACTGCTTCCATGAATATTGTTTACAGGGAGACTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
CDS-3UTR CCA 90 bp GACAATCCTGTTCCAGACTCGCGGAGACCCAAACAAGCCGTCAGTCTGGAACGCACACACCACAGTGTTTaGACCTCACTGGCTTCCGAA +
Preference number: 4 (lower is better)
Translates to: DNPVPDSRRPKQAVSLERTHHSV*TSLASE
Trigger: TTCGGAAGCCAGTGAGGTCCAAACACTGTGGTGTGT...GCGTTCCAGACTGACGGCTTGTTTGGGTCTCCGCGAGTCTGGAACAGGATTGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
3UTR CAA 72 bp AGTGCTGACTCACCCTTGACGTTCTGGGCGTCCACATaGCCTCCGGCTTCCAGAAGAAGACTAATGACTGTG +
Preference number: 4 (lower is better)
Translates to: SADSPLTFWAST*PPASRRRLMTV
Trigger: CACAGTCATTAGTCTTCTTCTGGAAGCCGGAGGCAATGTGGACGCCCAGAACGTCAAGGGTGAGTCAGCACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
CDS-3UTR TCA 90 bp ATTGTTCCAAGGACGTGGATTCGAGGGAGAGAGAGACAGGGACAGACGCAATCCGAGGTATGTCCGAACTaGGCAGCCAAGTGGATACAG +
Preference number: 4 (lower is better)
Translates to: IVPRTWIRGRERQGQTQSEVCPN*AAKWIQ
Trigger: CTGTATCCACTTGGCTGCTCAGTTCGGACATACCTC...GGATTGCGTCTGTCCCTGTCTCTCTCTCCCTCGAATCCACGTCCTTGGAACAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
CDS-3UTR CCA 90 bp GACAATCCTGTTCCAGACTCGCGGAGACCCAAACAAGCCGTCAGTCTGGAACGCTCCAAAACCCATCCTTaGTGTACGTGGTCTCACAGT +
Preference number: 4 (lower is better)
Translates to: DNPVPDSRRPKQAVSLERSKTHP*CTWSHS
Trigger: ACTGTGAGACCACGTACACCAAGGATGGGTTTTGGA...GCGTTCCAGACTGACGGCTTGTTTGGGTCTCCGCGAGTCTGGAACAGGATTGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
3UTR CAA 72 bp TTTCTTTGCTTTGCCAAATCAAGTGCTGACTCACCCTaGACGTTCTGGGCGTCCACATTGCCTCCGGCTTCC +
Preference number: 4 (lower is better)
Translates to: FLCFAKSSADSP*TFWASTLPPAS
Trigger: GGAAGCCGGAGGCAATGTGGACGCCCAGAACGTCAAGGGTGAGTCAGCACTTGATTTGGCAAAGCAAAGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
CDS-3UTR TCA 90 bp CGACCAGCCAGATCACCAGGAATGGGGTTCCCAGCATTACTTTCTGCCGAAATTGAGGTATGTCCGAACTaGGCAGCCAAGTGGATACAG +
Preference number: 4 (lower is better)
Translates to: RPARSPGMGFPALLSAEIEVCPN*AAKWIQ
Trigger: CTGTATCCACTTGGCTGCTCAGTTCGGACATACCTC...AATTTCGGCAGAAAGTAATGCTGGGAACCCCATTCCTGGTGATCTGGCTGGTCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
CDS-3UTR TCA 90 bp ATCCTAAGTTTGCCTAGCACTGGACATGCAGTGAACTTGCAGGGGCGAGTGCCTCAGCCTTCAGCTTTCTaGGGAAGGATGGGTTGTCAT +
Preference number: 4 (lower is better)
Translates to: ILSLPSTGHAVNLQGRVPQPSAF*GRMGCH
Trigger: ATGACAACCCATCCTTCCTCAGAAAGCTGAAGGCTG...AGGCACTCGCCCCTGCAAGTTCACTGCATGTCCAGTGCTAGGCAAACTTAGGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
CDS-3UTR GCA 90 bp GAGTCTCCCTGTAAACAATATTCATGGAAGCAGTGGCAAGTCGACCCTGAGGGTTCTGGGCGTCCACATTaGCTCCGGCTTCCAGAAGAA +
Preference number: 4 (lower is better)
Translates to: ESPCKQYSWKQWQVDPEGSGRPH*LRLPEE
Trigger: TTCTTCTGGAAGCCGGAGGCAATGTGGACGCCCAGA...ACCCTCAGGGTCGACTTGCCACTGCTTCCATGAATATTGTTTACAGGGAGACTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
CDS-3UTR CCA 90 bp ATTGTTCCAAGGACGTGGATTCGAGGGAGAGAGAGACAGGGACAGACGCAATCCGCAAGGAAGGGGAGGTaGATGAACAGGAAGTTGAGA +
Preference number: 4 (lower is better)
Translates to: IVPRTWIRGRERQGQTQSARKGR*MNRKLR
Trigger: TCTCAACTTCCTGTTCATCCACCTCCCCTTCCTTGC...GGATTGCGTCTGTCCCTGTCTCTCTCTCCCTCGAATCCACGTCCTTGGAACAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
CDS-3UTR CCA 90 bp ATCCTGTTCCAGACTCGCGGAGACCCAAACAAGCCGTCAGTCTGGAACGCATCTCCCATAAAGTACCTATaGTTGCCTGCACCTACACAG +
Preference number: 4 (lower is better)
Translates to: ILFQTRGDPNKPSVWNASPIKYL*LPAPTQ
Trigger: CTGTGTAGGTGCAGGCAACCATAGGTACTTTATGGG...AGATGCGTTCCAGACTGACGGCTTGTTTGGGTCTCCGCGAGTCTGGAACAGGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
CDS-3UTR TCA 90 bp CAGAGTCTCCCTGTAAACAATATTCATGGAAGCAGTGGCAAGTCGACCCTGAGGAGTGGCTCTGTGGTTTaGTTTCCTCCGGGTGGAGAA +
Preference number: 4 (lower is better)
Translates to: QSLPVNNIHGSSGKSTLRSGSVV*FPPGGE
Trigger: TTCTCCACCCGGAGGAAATCAAACCACAGAGCCACT...CCTCAGGGTCGACTTGCCACTGCTTCCATGAATATTGTTTACAGGGAGACTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
CDS-3UTR TCA 90 bp ATTGTTCCAAGGACGTGGATTCGAGGGAGAGAGAGACAGGGACAGACGCAATCCAGGTCTCCTCCAAGTTaGTCCACAATAGCACCTTTC +
Preference number: 4 (lower is better)
Translates to: IVPRTWIRGRERQGQTQSRSPPS*STIAPF
Trigger: GAAAGGTGCTATTGTGGATCAACTTGGAGGAGACCT...GGATTGCGTCTGTCCCTGTCTCTCTCTCCCTCGAATCCACGTCCTTGGAACAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
CDS-3UTR TCA 90 bp GACAATCCTGTTCCAGACTCGCGGAGACCCAAACAAGCCGTCAGTCTGGAACGCAGTGAAACACACTGTTaGGAAACATCCAGAACATCC +
Preference number: 4 (lower is better)
Translates to: DNPVPDSRRPKQAVSLERSETHC*ETSRTS
Trigger: GGATGTTCTGGATGTTTCTCAACAGTGTGTTTCACT...GCGTTCCAGACTGACGGCTTGTTTGGGTCTCCGCGAGTCTGGAACAGGATTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
CDS-3UTR TCA 90 bp ACTGAGCATCAACTATGTACATGTCCGCTGCTCCTCCTCCTAAGGCAGGGCGGGTTGATGGCAGCCCAATaGAGAAGTGTAACATTTTCT +
Preference number: 4 (lower is better)
Translates to: TEHQLCTCPLLLLLRQGGLMAAQ*RSVTFS
Trigger: AGAAAATGTTACACTTCTTCATTGGGCTGCCATCAA...CCCGCCCTGCCTTAGGAGGAGGAGCAGCGGACATGTACATAGTTGATGCTCAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
CDS-3UTR TCA 90 bp TTCGAGGGAGAGAGAGACAGGGACAGACGCAATCCTCAGGCACCACTCAGTAACAAGATAAGCAACAATTaGGGTATGTCCGAACTGAGC +
Preference number: 4 (lower is better)
Translates to: FEGERDRDRRNPQAPLSNKISNN*GMSELS
Trigger: GCTCAGTTCGGACATACCTCAATTGTTGCTTATCTT...GTTACTGAGTGGTGCCTGAGGATTGCGTCTGTCCCTGTCTCTCTCTCCCTCGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
CDS-3UTR TCA 90 bp ACTGAGCATCAACTATGTACATGTCCGCTGCTCCTCCTCCTAAGGCAGGGCGGGCTGGTACCCAGATCCTaGTATTTGGTCATATTCTAT +
Preference number: 4 (lower is better)
Translates to: TEHQLCTCPLLLLLRQGGLVPRS*YLVIFY
Trigger: ATAGAATATGACCAAATATCAGGATCTGGGTACCAG...CCCGCCCTGCCTTAGGAGGAGGAGCAGCGGACATGTACATAGTTGATGCTCAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
CDS-3UTR GCA 90 bp AGGAATGGGGTTCCCAGCATTACTTTCTGCCGAAATTCCTTGTCAGCCTTCAGCTGTCTTGTGGCCCAGTaGAACGGAGTTGAATTCAGG +
Preference number: 4 (lower is better)
Translates to: RNGVPSITFCRNSLSAFSCLVAQ*NGVEFR
Trigger: CCTGAATTCAACTCCGTTGCACTGGGCCACAAGACA...GCTGAAGGCTGACAAGGAATTTCGGCAGAAAGTAATGCTGGGAACCCCATTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
CDS-3UTR GCA 90 bp ATCCTAAGTTTGCCTAGCACTGGACATGCAGTGAACTTGCAGGGGCGAGTGCCTGACTTGGAAAGAAATTaGACTGTAGCCCAAACGCCA +
Preference number: 4 (lower is better)
Translates to: ILSLPSTGHAVNLQGRVPDLERN*TVAQTP
Trigger: TGGCGTTTGGGCTACAGTGCAATTTCTTTCCAAGTC...AGGCACTCGCCCCTGCAAGTTCACTGCATGTCCAGTGCTAGGCAAACTTAGGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
CDS-3UTR CCA 90 bp CAGCATTACTTTCTGCCGAAATTCCTTGTCAGCCTTCAGCTTTCTGAGGAAGGAATTGCCTTGACGTTCTaGGCGTCCACATTGCCTCCG +
Preference number: 4 (lower is better)
Translates to: QHYFLPKFLVSLQLSEEGIALTF*ASTLPP
Trigger: CGGAGGCAATGTGGACGCCCAGAACGTCAAGGCAAT...TCCTTCCTCAGAAAGCTGAAGGCTGACAAGGAATTTCGGCAGAAAGTAATGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218895.2
3UTR CAA 72 bp GTCGAGTTCACGGTTAGCCCTACATATAGCATGCTATaGTTCCAAGGACGTGGATTCGAGGGAGAGAGAGAC +
Preference number: 4 (lower is better)
Translates to: VEFTVSPTYSML*FQGRGFEGERD
Trigger: GTCTCTCTCTCCCTCGAATCCACGTCCTTGGAACAATAGCATGCTATATGTAGGGCTAACCGTGAACTCGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
3UTR CAA 72 bp ATCCTAAGTTTGCCTAGCACTGGACATGCAGTGAACTaGCAGGGGCGAGTGCCTATTAACAGCGGTATGGAA +
Preference number: 4 (lower is better)
Translates to: ILSLPSTGHAVN*QGRVPINSGME
Trigger: TTCCATACCGCTGTTAATAGGCACTCGCCCCTGCAAGTTCACTGCATGTCCAGTGCTAGGCAAACTTAGGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
3UTR CAA 72 bp CTTTCTGAGGAAGGATGGGTTGTCATACCCTTTCGCTaGCCTTGCCTCCTGCAAATGGTTGATCATCCACAC +
Preference number: 4 (lower is better)
Translates to: LSEEGWVVIPFR*PCLLQMVDHPH
Trigger: GTGTGGATGATCAACCATTTGCAGGAGGCAAGGCAAGCGAAAGGGTATGACAACCCATCCTTCCTCAGAAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000218895.2
ENSMUST00000220247.2
3UTR CAA 72 bp AATTTCGCTATACAGCGGTTGCACACACCACAGTGTTaGGACCTCACTGGCTTCCGAATCAAGCAGGTACTG +
Preference number: 4 (lower is better)
Translates to: NFAIQRLHTPQC*DLTGFRIKQVL
Trigger: CAGTACCTGCTTGATTCGGAAGCCAGTGAGGTCCAAACACTGTGGTGTGTGCAACCGCTGTATAGCGAAATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
CDS-3UTR TCA 90 bp ATTGTTCCAAGGACGTGGATTCGAGGGAGAGAGAGACAGGGACAGACGCAATCCTCATCCAGCAGATCATaGAAAGCAAGAAGAACAGGT +
Preference number: 4 (lower is better)
Translates to: IVPRTWIRGRERQGQTQSSSSRS*KARRTG
Trigger: ACCTGTTCTTCTTGCTTTTCATGATCTGCTGGATGA...GGATTGCGTCTGTCCCTGTCTCTCTCTCCCTCGAATCCACGTCCTTGGAACAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
CDS-3UTR GCA 90 bp AAATATATCCCAAGGGGCAATGCGCTGTGCATTGAATGGTCAAAGAAGGACTTGTCTGGGCGTCCACATTaGCTCCGGCTTCCAGAAGAA +
Preference number: 4 (lower is better)
Translates to: KYIPRGNALCIEWSKKDLSGRPH*LRLPEE
Trigger: TTCTTCTGGAAGCCGGAGGCAATGTGGACGCCCAGA...CAAGTCCTTCTTTGACCATTCAATGCACAGCGCATTGCCCCTTGGGATATATTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218895.2
CDS-3UTR GCA 90 bp CCTGTAAACAATATTCATGGAAGCAGTGGCAAGTCGACCCTGAGGGTGTGGAAACCCTTTCGCTTGCCTTaGCTCCTGCAAATGGTTGAT +
Preference number: 4 (lower is better)
Translates to: PVNNIHGSSGKSTLRVWKPFRLP*LLQMVD
Trigger: ATCAACCATTTGCAGGAGGCAAGGCAAGCGAAAGGG...TTTCCACACCCTCAGGGTCGACTTGCCACTGCTTCCATGAATATTGTTTACAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
CDS-3UTR GCA 90 bp GTTGCCAAATATATCCCAAGGGGCAATGCGCTGTGCATTGAATGGTCAAAGAAGGTGACACCTAAGGATTaGCTTGACGTTCTGGGCGTC +
Preference number: 4 (lower is better)
Translates to: VAKYIPRGNALCIEWSKKVTPKD*LDVLGV
Trigger: GACGCCCAGAACGTCAAGGCAATCCTTAGGTGTCAC...CTTCTTTGACCATTCAATGCACAGCGCATTGCCCCTTGGGATATATTTGGCAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218895.2
CDS-3UTR CCA 90 bp CAAACGCCACCATACATTAACCCTTTAATGAGCCAAGAATCAATGTCTAGGTCTTTGATTTCCTCCGGGTaGAGAAGGGGCACGCAGCCC +
Preference number: 4 (lower is better)
Translates to: QTPPYINPLMSQESMSRSLISSG*RRGTQP
Trigger: GGGCTGCGTGCCCCTTCTCCACCCGGAGGAAATCAA...AGACCTAGACATTGATTCTTGGCTCATTAAAGGGTTAATGTATGGTGGCGTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
CDS-3UTR CCA 90 bp GACCCTGAGGGTGTGGAAACGCTGCAACACAACGTGATCAGTGCATCACATTTAACAACCATGGATAAATaGCCTTGTCTTGTGGCCCAG +
Preference number: 4 (lower is better)
Translates to: DPEGVETLQHNVISASHLTTMDK*PCLVAQ
Trigger: CTGGGCCACAAGACAAGGCCATTTATCCATGGTTGT...TAAATGTGATGCACTGATCACGTTGTGTTGCAGCGTTTCCACACCCTCAGGGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
3UTR CAA 72 bp ATACCTGTAGCCAGCAATTTACAGGGAATCCTAAGTTaGCCTAGCACTGGACATGCAGTGAACTTGCAGGGG +
Preference number: 4 (lower is better)
Translates to: IPVASNLQGILS*PSTGHAVNLQG
Trigger: CCCCTGCAAGTTCACTGCATGTCCAGTGCTAGGCAAACTTAGGATTCCCTGTAAATTGCTGGCTACAGGTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
3UTR CAA 72 bp AATGGGGTTCCCAGCATTACTTTCTGCCGAAATTCCTaGTCAGCCTTCAGCTTTCTGAGGAAGGATGGGTTG +
Preference number: 4 (lower is better)
Translates to: NGVPSITFCRNS*SAFSFLRKDGL
Trigger: CAACCCATCCTTCCTCAGAAAGCTGAAGGCTGACAAGGAATTTCGGCAGAAAGTAATGCTGGGAACCCCATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000218895.2
ENSMUST00000220247.2
CDS-3UTR TCA 90 bp CAGAGTCTCCCTGTAAACAATATTCATGGAAGCAGTGGCAAGTCGACCCTGAGGGAGCATGTGGCGATCTaGGTTATGTATGTCCAAAAC +
Preference number: 4 (lower is better)
Translates to: QSLPVNNIHGSSGKSTLREHVAI*VMYVQN
Trigger: GTTTTGGACATACATAACTCAGATCGCCACATGCTC...CCTCAGGGTCGACTTGCCACTGCTTCCATGAATATTGTTTACAGGGAGACTCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
CDS-3UTR GCA 90 bp GGAAACACTGAGCATCAACTATGTACATGTCCGCTGCTCCTCCTCCTAAGGCAGCAGACTTCCAGTCTCTaGAAGTTCAACTATCGTCTT +
Preference number: 4 (lower is better)
Translates to: GNTEHQLCTCPLLLLLRQQTSSL*KFNYRL
Trigger: AAGACGATAGTTGAACTTGCAGAGACTGGAAGTCTG...CTGCCTTAGGAGGAGGAGCAGCGGACATGTACATAGTTGATGCTCAGTGTTTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
CDS-3UTR CCA 90 bp CAGAGTCTCCCTGTAAACAATATTCATGGAAGCAGTGGCAAGTCGACCCTGAGGGCGCTGTGCATTGAATaGTCAAAGAAGGACTTGGAA +
Preference number: 4 (lower is better)
Translates to: QSLPVNNIHGSSGKSTLRALCIE*SKKDLE
Trigger: TTCCAAGTCCTTCTTTGACCATTCAATGCACAGCGC...CCTCAGGGTCGACTTGCCACTGCTTCCATGAATATTGTTTACAGGGAGACTCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
CDS-3UTR TCA 90 bp CAGAATTTGGTTGCCAAATATATCCCAAGGGGCAATGCGCTGTGCATTGAATGGAGGTCTCCTCCAAGTTaGTCCACAATAGCACCTTTC +
Preference number: 4 (lower is better)
Translates to: QNLVAKYIPRGNALCIEWRSPPS*STIAPF
Trigger: GAAAGGTGCTATTGTGGATCAACTTGGAGGAGACCT...CCATTCAATGCACAGCGCATTGCCCCTTGGGATATATTTGGCAACCAAATTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
CDS-3UTR GCA 90 bp CAGAGTCTCCCTGTAAACAATATTCATGGAAGCAGTGGCAAGTCGACCCTGAGGCATCCAGAATTTGGTTaGCAAATATATCCCAAGGGG +
Preference number: 4 (lower is better)
Translates to: QSLPVNNIHGSSGKSTLRHPEFG*QIYPKG
Trigger: CCCCTTGGGATATATTTGGCAACCAAATTCTGGATG...CCTCAGGGTCGACTTGCCACTGCTTCCATGAATATTGTTTACAGGGAGACTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
CDS-3UTR CCA 90 bp CTACATATAGCATGCTATTGTTCCAAGGACGTGGATTCGAGGGAGAGAGAGACAGTTATAGTGGCTCTGTaGTTTGATTTCCTCCGGGTG +
Preference number: 4 (lower is better)
Translates to: LHIACYCSKDVDSRERETVIVAL*FDFLRV
Trigger: CACCCGGAGGAAATCAAACCACAGAGCCACTATAAC...TGTCTCTCTCTCCCTCGAATCCACGTCCTTGGAACAATAGCATGCTATATGTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
CDS-3UTR CCA 90 bp ATCCTGTTCCAGACTCGCGGAGACCCAAACAAGCCGTCAGTCTGGAACGCATCTCCAGATCCTGATATTTaGTCATATTCTATAGTGTAC +
Preference number: 4 (lower is better)
Translates to: ILFQTRGDPNKPSVWNASPDPDI*SYSIVY
Trigger: GTACACTATAGAATATGACCAAATATCAGGATCTGG...AGATGCGTTCCAGACTGACGGCTTGTTTGGGTCTCCGCGAGTCTGGAACAGGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
CDS-3UTR TCA 90 bp GTGAGACCCCAGAGCAAGGTTACTAGAAATTATCTCACTGAACTAGAAATAAGCCCAGTGCAACGGAGTTaGATTCAGGTCTCCTCCAAG +
Preference number: 4 (lower is better)
Translates to: VRPQSKVTRNYLTELEISPVQRS*IQVSSK
Trigger: CTTGGAGGAGACCTGAATTCAACTCCGTTGCACTGG...GCTTATTTCTAGTTCAGTGAGATAATTTCTAGTAACCTTGCTCTGGGGTCTCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
CDS-3UTR TCA 90 bp GACCCTGAGGGTGTGGAAACGCTGCAACACAACGTGATCAGTGCATCACATTTAAGAGCAGTGTTTTTGTaGTACTTGTCACCAAGGTTA +
Preference number: 4 (lower is better)
Translates to: DPEGVETLQHNVISASHLRAVFL*YLSPRL
Trigger: TAACCTTGGTGACAAGTATCACAAAAACACTGCTCT...TAAATGTGATGCACTGATCACGTTGTGTTGCAGCGTTTCCACACCCTCAGGGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
CDS-3UTR CCA 90 bp CAGAGTCTCCCTGTAAACAATATTCATGGAAGCAGTGGCAAGTCGACCCTGAGGAGTGCTTGTATCTCCTaGCGTTCATTCTTTCATTTG +
Preference number: 4 (lower is better)
Translates to: QSLPVNNIHGSSGKSTLRSACIS*RSFFHL
Trigger: CAAATGAAAGAATGAACGCCAGGAGATACAAGCACT...CCTCAGGGTCGACTTGCCACTGCTTCCATGAATATTGTTTACAGGGAGACTCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
CDS-3UTR CCA 90 bp GGAAACACTGAGCATCAACTATGTACATGTCCGCTGCTCCTCCTCCTAAGGCAGACATCCATGGTTGAATaGGCTTTCAATAGATGTTGT +
Preference number: 4 (lower is better)
Translates to: GNTEHQLCTCPLLLLLRQTSMVE*AFNRCC
Trigger: ACAACATCTATTGAAAGCCCATTCAACCATGGATGT...CTGCCTTAGGAGGAGGAGCAGCGGACATGTACATAGTTGATGCTCAGTGTTTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
3UTR CAA 72 bp ACCAGAAGAACCATGTCACATACATCCAGAATTTGGTaGCCAAATATATCCCAAGGGGCAATGCGCTGTGCA +
Preference number: 4 (lower is better)
Translates to: TRRTMSHTSRIW*PNISQGAMRCA
Trigger: TGCACAGCGCATTGCCCCTTGGGATATATTTGGCAACCAAATTCTGGATGTATGTGACATGGTTCTTCTGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000218895.2
ENSMUST00000220247.2
3UTR CAA 72 bp CAGAACCAGAAGAACCATGTCACATACATCCAGAATTaGGTTGCCAAATATATCCCAAGGGGCAATGCGCTG +
Preference number: 4 (lower is better)
Translates to: QNQKNHVTYIQN*VAKYIPRGNAL
Trigger: CAGCGCATTGCCCCTTGGGATATATTTGGCAACCAAATTCTGGATGTATGTGACATGGTTCTTCTGGTTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000218895.2
ENSMUST00000220247.2
CDS-3UTR TCA 90 bp TACATTAACCCTTTAATGAGCCAAGAATCAATGTCTAGGTCTGCTATAAACCCGAGTGGCTCTGTGGTTTaGTTTCCTCCGGGTGGAGAA +
Preference number: 4 (lower is better)
Translates to: YINPLMSQESMSRSAINPSGSVV*FPPGGE
Trigger: TTCTCCACCCGGAGGAAATCAAACCACAGAGCCACT...CGGGTTTATAGCAGACCTAGACATTGATTCTTGGCTCATTAAAGGGTTAATGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
CDS-3UTR TCA 90 bp GTCCACGATAACAGGACGAAAGAGGCCACAGCATCGAAATTCAAAGAAGTCTATGGGGTCATTCCATTCTaGTCCATCATATCTACATCC +
Preference number: 4 (lower is better)
Translates to: VHDNRTKEATASKFKEVYGVIPF*SIISTS
Trigger: GGATGTAGATATGATGGATCAGAATGGAATGACCCC...ATAGACTTCTTTGAATTTCGATGCTGTGGCCTCTTTCGTCCTGTTATCGTGGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
CDS-3UTR GCA 90 bp TTTTCAGTTATTCACATGTGCTATGTACAGAGGTCATGCCCCATCTTTAGCCTAGCTTGCCTTGCCTCCTaGAAATGGTTGATCATCCAC +
Preference number: 4 (lower is better)
Translates to: FSVIHMCYVQRSCPIFSLACLAS*KWLIIH
Trigger: GTGGATGATCAACCATTTGCAGGAGGCAAGGCAAGC...TAGGCTAAAGATGGGGCATGACCTCTGTACATAGCACATGTGAATAACTGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
CDS-3UTR CCA 90 bp CATTTAACAGTAAGATCTGCTGAGAAGGCTTCAGAAAGGGTTACCAATGTCAAAAATGGCCTTGTCTTGTaGCCCAGTGCAACGGAGTTG +
Preference number: 4 (lower is better)
Translates to: HLTVRSAEKASERVTNVKNGLVL*PSATEL
Trigger: CAACTCCGTTGCACTGGGCCACAAGACAAGGCCATT...TTTGACATTGGTAACCCTTTCTGAAGCCTTCTCAGCAGATCTTACTGTTAAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
CDS-3UTR TCA 90 bp GTGAGACCCCAGAGCAAGGTTACTAGAAATTATCTCACTGAACTAGAAATAAGCCATATTGTGTCGCCTTaGCGATGTCCCATGTGCTAT +
Preference number: 4 (lower is better)
Translates to: VRPQSKVTRNYLTELEISHIVSP*RCPMCY
Trigger: ATAGCACATGGGACATCGTCAAGGCGACACAATATG...GCTTATTTCTAGTTCAGTGAGATAATTTCTAGTAACCTTGCTCTGGGGTCTCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
CDS-3UTR GCA 90 bp GGGTATTTTGTGGAGGTGACTTACGGTCACAGAGATTACTATAAAATGGTAGTATGTCTTGTGGCCCAGTaGAACGGAGTTGAATTCAGG +
Preference number: 4 (lower is better)
Translates to: GYFVEVTYGHRDYYKMVVCLVAQ*NGVEFR
Trigger: CCTGAATTCAACTCCGTTGCACTGGGCCACAAGACA...TACTACCATTTTATAGTAATCTCTGTGACCGTAAGTCACCTCCACAAAATACCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
CDS-3UTR GCA 90 bp TCTGCTGAGAAGGCTTCAGAAAGGGTTACCAATGTCAAAACATACTCAATATTGTCGCTATACAGCGGTTaGACACACCACAGTGTTTGG +
Preference number: 4 (lower is better)
Translates to: SAEKASERVTNVKTYSILSLYSG*THHSVW
Trigger: CCAAACACTGTGGTGTGTGCAACCGCTGTATAGCGA...CAATATTGAGTATGTTTTGACATTGGTAACCCTTTCTGAAGCCTTCTCAGCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
3UTR CAA 72 bp TTGCCAAATATATCCCAAGGGGCAATGCGCTGTGCATaGAATGGTCAAAGAAGGACTTGGAAAGAAATTGCA +
Preference number: 4 (lower is better)
Translates to: LPNISQGAMRCA*NGQRRTWKEIA
Trigger: TGCAATTTCTTTCCAAGTCCTTCTTTGACCATTCAATGCACAGCGCATTGCCCCTTGGGATATATTTGGCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000218895.2
ENSMUST00000220247.2
CDS-3UTR TCA 90 bp TCTGCTGAGAAGGCTTCAGAAAGGGTTACCAATGTCAAAACATACTCAATATTGCATATTGTGTCGCCTTaGCGATGTCCCATGTGCTAT +
Preference number: 4 (lower is better)
Translates to: SAEKASERVTNVKTYSILHIVSP*RCPMCY
Trigger: ATAGCACATGGGACATCGTCAAGGCGACACAATATG...CAATATTGAGTATGTTTTGACATTGGTAACCCTTTCTGAAGCCTTCTCAGCAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
CDS-3UTR TCA 90 bp GAAACGCTGCAACACAACGTGATCAGTGCATCACATTTAACAGTAAGATCTGCTAAGATAAGCAACAATTaGGGTATGTCCGAACTGAGC +
Preference number: 4 (lower is better)
Translates to: ETLQHNVISASHLTVRSAKISNN*GMSELS
Trigger: GCTCAGTTCGGACATACCTCAATTGTTGCTTATCTT...AGCAGATCTTACTGTTAAATGTGATGCACTGATCACGTTGTGTTGCAGCGTTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
CDS-3UTR TCA 90 bp TTTTCAGTTATTCACATGTGCTATGTACAGAGGTCATGCCCCATCTTTAGCCTAGGGGTCATTCCATTCTaGTCCATCATATCTACATCC +
Preference number: 4 (lower is better)
Translates to: FSVIHMCYVQRSCPIFSLGVIPF*SIISTS
Trigger: GGATGTAGATATGATGGATCAGAATGGAATGACCCC...TAGGCTAAAGATGGGGCATGACCTCTGTACATAGCACATGTGAATAACTGAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
CDS-3UTR CCA 90 bp GTGAGACCCCAGAGCAAGGTTACTAGAAATTATCTCACTGAACTAGAAATAAGCCTTGCCTCCTGCAAATaGTTGATCATCCACACGTTT +
Preference number: 4 (lower is better)
Translates to: VRPQSKVTRNYLTELEISLASCK*LIIHTF
Trigger: AAACGTGTGGATGATCAACCATTTGCAGGAGGCAAG...GCTTATTTCTAGTTCAGTGAGATAATTTCTAGTAACCTTGCTCTGGGGTCTCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
CDS-3UTR CCA 90 bp AAATATATCCCAAGGGGCAATGCGCTGTGCATTGAATGGTCAAAGAAGGACTTGTTAGTTGTACAACCATaGATAAATGGCCTTGTCTTG +
Preference number: 4 (lower is better)
Translates to: KYIPRGNALCIEWSKKDLLVVQP*INGLVL
Trigger: CAAGACAAGGCCATTTATCCATGGTTGTACAACTAA...CAAGTCCTTCTTTGACCATTCAATGCACAGCGCATTGCCCCTTGGGATATATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
CDS-3UTR TCA 90 bp CAAACGCCACCATACATTAACCCTTTAATGAGCCAAGAATCAATGTCTAGGTCTAGAGCAGTGTTTTTGTaGTACTTGTCACCAAGGTTA +
Preference number: 4 (lower is better)
Translates to: QTPPYINPLMSQESMSRSRAVFL*YLSPRL
Trigger: TAACCTTGGTGACAAGTATCACAAAAACACTGCTCT...AGACCTAGACATTGATTCTTGGCTCATTAAAGGGTTAATGTATGGTGGCGTTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000218895.2
CDS-3UTR TCA 90 bp GTTATTTATATACAGATACACAGTCTTTACACTGGTCTAGGATGTCAGTCTGACACCCATGGGCAATGGTaGTCAAATTTCGCTATACAG +
Preference number: 4 (lower is better)
Translates to: VIYIQIHSLYTGLGCQSDTHGQW*SNFAIQ
Trigger: CTGTATAGCGAAATTTGATCACCATTGCCCATGGGT...GTCAGACTGACATCCTAGACCAGTGTAAAGACTGTGTATCTGTATATAAATAAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
CDS-3UTR GCA 90 bp CATTTAACAGTAAGATCTGCTGAGAAGGCTTCAGAAAGGGTTACCAATGTCAAAGTCGTAACTTTAAAGTaGTTGTATCTCCTGGCGTTC +
Preference number: 4 (lower is better)
Translates to: HLTVRSAEKASERVTNVKVVTLK*LYLLAF
Trigger: GAACGCCAGGAGATACAAGCACTTTAAAGTTACGAC...TTTGACATTGGTAACCCTTTCTGAAGCCTTCTCAGCAGATCTTACTGTTAAATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
CDS-3UTR GCA 90 bp CATTTAACAGTAAGATCTGCTGAGAAGGCTTCAGAAAGGGTTACCAATGTCAAATATTCTATAGTGTACTaGCTGGTCCAGTCCACGATA +
Preference number: 4 (lower is better)
Translates to: HLTVRSAEKASERVTNVKYSIVY*LVQSTI
Trigger: TATCGTGGACTGGACCAGGCAGTACACTATAGAATA...TTTGACATTGGTAACCCTTTCTGAAGCCTTCTCAGCAGATCTTACTGTTAAATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
CDS-3UTR CCA 90 bp ACACAGTACAGTAGACCTCTAATAAAACCACATGATTCTCATCACAGTATTTACGTTATAGTGGCTCTGTaGTTTGATTTCCTCCGGGTG +
Preference number: 4 (lower is better)
Translates to: TQYSRPLIKPHDSHHSIYVIVAL*FDFLRV
Trigger: CACCCGGAGGAAATCAAACCACAGAGCCACTATAAC...GTAAATACTGTGATGAGAATCATGTGGTTTTATTAGAGGTCTACTGTACTGTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
CDS-3UTR CCA 90 bp ACACAGTACAGTAGACCTCTAATAAAACCACATGATTCTCATCACAGTATTTACACAACCATGGATAAATaGCCTTGTCTTGTGGCCCAG +
Preference number: 4 (lower is better)
Translates to: TQYSRPLIKPHDSHHSIYTTMDK*PCLVAQ
Trigger: CTGGGCCACAAGACAAGGCCATTTATCCATGGTTGT...GTAAATACTGTGATGAGAATCATGTGGTTTTATTAGAGGTCTACTGTACTGTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
CDS-3UTR TCA 90 bp ACACAGTACAGTAGACCTCTAATAAAACCACATGATTCTCATCACAGTATTTACTACTGCAGAATATACTaGGGTCCAGACTTCCAGTCT +
Preference number: 4 (lower is better)
Translates to: TQYSRPLIKPHDSHHSIYYCRIY*GPDFQS
Trigger: AGACTGGAAGTCTGGACCTCAGTATATTCTGCAGTA...GTAAATACTGTGATGAGAATCATGTGGTTTTATTAGAGGTCTACTGTACTGTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
CDS-3UTR CCA 90 bp TTTTCAGTTATTCACATGTGCTATGTACAGAGGTCATGCCCCATCTTTAGCCTATTAGTTGTACAACCATaGATAAATGGCCTTGTCTTG +
Preference number: 4 (lower is better)
Translates to: FSVIHMCYVQRSCPIFSLLVVQP*INGLVL
Trigger: CAAGACAAGGCCATTTATCCATGGTTGTACAACTAA...TAGGCTAAAGATGGGGCATGACCTCTGTACATAGCACATGTGAATAACTGAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
CDS-3UTR CCA 90 bp ACACAGTACAGTAGACCTCTAATAAAACCACATGATTCTCATCACAGTATTTACACAGTTACCCACCCATaGGCAATGGTGATCAAATTT +
Preference number: 4 (lower is better)
Translates to: TQYSRPLIKPHDSHHSIYTVTHP*AMVIKF
Trigger: AAATTTGATCACCATTGCCCATGGGTGGGTAACTGT...GTAAATACTGTGATGAGAATCATGTGGTTTTATTAGAGGTCTACTGTACTGTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
3UTR CAA 72 bp GGGCTTTCAATAGATGTTGTCGTAACTTTAAAGTGCTaGTATCTCCTGGCGTTCATTCTTTCATTTGTAGTA +
Preference number: 4 (lower is better)
Translates to: GLSIDVVVTLKC*YLLAFILSFVV
Trigger: TACTACAAATGAAAGAATGAACGCCAGGAGATACAAGCACTTTAAAGTTACGACAACATCTATTGAAAGCCC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
CDS-3UTR CCA 90 bp ACACAGTACAGTAGACCTCTAATAAAACCACATGATTCTCATCACAGTATTTACTTCCTTACACATCCATaGTTGAATGGGCTTTCAATA +
Preference number: 4 (lower is better)
Translates to: TQYSRPLIKPHDSHHSIYFLTHP*LNGLSI
Trigger: TATTGAAAGCCCATTCAACCATGGATGTGTAAGGAA...GTAAATACTGTGATGAGAATCATGTGGTTTTATTAGAGGTCTACTGTACTGTGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
CDS-3UTR CAA 90 bp TTCGAGGGAGAGAGAGACAGGGACAGACGCAATCCTCAGGCACCACTCAGTAACAAAAGAGCAACGCTGTaGGCAAGGAAGGGGAGGTGG +
Preference number: 5 (lower is better)
Translates to: FEGERDRDRRNPQAPLSNKRATL*ARKGRW
Trigger: CCACCTCCCCTTCCTTGCCAACAGCGTTGCTCTTTT...GTTACTGAGTGGTGCCTGAGGATTGCGTCTGTCCCTGTCTCTCTCTCCCTCGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
CDS-3UTR CAA 90 bp GTGGATTCGAGGGAGAGAGAGACAGGGACAGACGCAATCCTCAGGCACCACTCATTCGCTATACAGCGGTaGCACACACCACAGTGTTTG +
Preference number: 5 (lower is better)
Translates to: VDSRERETGTDAILRHHSFAIQR*HTPQCL
Trigger: CAAACACTGTGGTGTGTGCAACCGCTGTATAGCGAA...TGAGTGGTGCCTGAGGATTGCGTCTGTCCCTGTCTCTCTCTCCCTCGAATCCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
CDS-3UTR CAA 90 bp TCTCCCTGTAAACAATATTCATGGAAGCAGTGGCAAGTCGACCCTGAGGGTGTGTTCTGGGCGTCCACATaGCCTCCGGCTTCCAGAAGA +
Preference number: 5 (lower is better)
Translates to: SPCKQYSWKQWQVDPEGVFWAST*PPASRR
Trigger: TCTTCTGGAAGCCGGAGGCAATGTGGACGCCCAGAA...CACACCCTCAGGGTCGACTTGCCACTGCTTCCATGAATATTGTTTACAGGGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
CDS-3UTR CAA 90 bp ATCCTAAGTTTGCCTAGCACTGGACATGCAGTGAACTTGCAGGGGCGAGTGCCTCTGAGGAAGGATGGGTaGTCATACCCTTTCGCTTGC +
Preference number: 5 (lower is better)
Translates to: ILSLPSTGHAVNLQGRVPLRKDG*SYPFAC
Trigger: GCAAGCGAAAGGGTATGACAACCCATCCTTCCTCAG...AGGCACTCGCCCCTGCAAGTTCACTGCATGTCCAGTGCTAGGCAAACTTAGGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
CDS-3UTR CAA 90 bp ATCCTGTTCCAGACTCGCGGAGACCCAAACAAGCCGTCAGTCTGGAACGCATCTTTCTGCCGAAATTCCTaGTCAGCCTTCAGCTTTCTG +
Preference number: 5 (lower is better)
Translates to: ILFQTRGDPNKPSVWNASFCRNS*SAFSFL
Trigger: CAGAAAGCTGAAGGCTGACAAGGAATTTCGGCAGAA...AGATGCGTTCCAGACTGACGGCTTGTTTGGGTCTCCGCGAGTCTGGAACAGGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
CDS-3UTR CAA 90 bp GACCCTGAGGGTGTGGAAACGCTGCAACACAACGTGATCAGTGCATCACATTTACACACACCACAGTGTTaGGACCTCACTGGCTTCCGA +
Preference number: 5 (lower is better)
Translates to: DPEGVETLQHNVISASHLHTPQC*DLTGFR
Trigger: TCGGAAGCCAGTGAGGTCCAAACACTGTGGTGTGTG...TAAATGTGATGCACTGATCACGTTGTGTTGCAGCGTTTCCACACCCTCAGGGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
CDS-3UTR CAA 90 bp GAGTCTCCCTGTAAACAATATTCATGGAAGCAGTGGCAAGTCGACCCTGAGGGTCCCAGTGCAACGGAGTaGAATTCAGGTCTCCTCCAA +
Preference number: 5 (lower is better)
Translates to: ESPCKQYSWKQWQVDPEGPSATE*NSGLLQ
Trigger: TTGGAGGAGACCTGAATTCAACTCCGTTGCACTGGG...ACCCTCAGGGTCGACTTGCCACTGCTTCCATGAATATTGTTTACAGGGAGACTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
CDS-3UTR CAA 90 bp AAATATATCCCAAGGGGCAATGCGCTGTGCATTGAATGGTCAAAGAAGGACTTGTTCTGGGCGTCCACATaGCCTCCGGCTTCCAGAAGA +
Preference number: 5 (lower is better)
Translates to: KYIPRGNALCIEWSKKDLFWAST*PPASRR
Trigger: TCTTCTGGAAGCCGGAGGCAATGTGGACGCCCAGAA...CAAGTCCTTCTTTGACCATTCAATGCACAGCGCATTGCCCCTTGGGATATATTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218895.2
CDS-3UTR CAA 90 bp GTGGATTCGAGGGAGAGAGAGACAGGGACAGACGCAATCCTCAGGCACCACTCATGGTCAAAGAAGGACTaGGAAAGAAATTGCACTGTA +
Preference number: 5 (lower is better)
Translates to: VDSRERETGTDAILRHHSWSKKD*ERNCTV
Trigger: TACAGTGCAATTTCTTTCCAAGTCCTTCTTTGACCA...TGAGTGGTGCCTGAGGATTGCGTCTGTCCCTGTCTCTCTCTCCCTCGAATCCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
CDS-3UTR CAA 90 bp ATTGTTCCAAGGACGTGGATTCGAGGGAGAGAGAGACAGGGACAGACGCAATCCTGGATGAACAGGAAGTaGAGATCATTCCAGAACCAG +
Preference number: 5 (lower is better)
Translates to: IVPRTWIRGRERQGQTQSWMNRK*RSFQNQ
Trigger: CTGGTTCTGGAATGATCTCAACTTCCTGTTCATCCA...GGATTGCGTCTGTCCCTGTCTCTCTCTCCCTCGAATCCACGTCCTTGGAACAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
CDS-3UTR CAA 90 bp CCTGTAAACAATATTCATGGAAGCAGTGGCAAGTCGACCCTGAGGGTGTGGAAACCATATTGTGTCGCCTaGACGATGTCCCATGTGCTA +
Preference number: 5 (lower is better)
Translates to: PVNNIHGSSGKSTLRVWKPYCVA*TMSHVL
Trigger: TAGCACATGGGACATCGTCAAGGCGACACAATATGG...TTTCCACACCCTCAGGGTCGACTTGCCACTGCTTCCATGAATATTGTTTACAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
CDS-3UTR CAA 90 bp GACCCTGAGGGTGTGGAAACGCTGCAACACAACGTGATCAGTGCATCACATTTAGCAATGCGCTGTGCATaGAATGGTCAAAGAAGGACT +
Preference number: 5 (lower is better)
Translates to: DPEGVETLQHNVISASHLAMRCA*NGQRRT
Trigger: AGTCCTTCTTTGACCATTCAATGCACAGCGCATTGC...TAAATGTGATGCACTGATCACGTTGTGTTGCAGCGTTTCCACACCCTCAGGGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
CDS-3UTR CAA 90 bp ATACATCCAGAATTTGGTTGCCAAATATATCCCAAGGGGCAATGCGCTGTGCATCCCAGTGCAACGGAGTaGAATTCAGGTCTCCTCCAA +
Preference number: 5 (lower is better)
Translates to: IHPEFGCQIYPKGQCAVHPSATE*NSGLLQ
Trigger: TTGGAGGAGACCTGAATTCAACTCCGTTGCACTGGG...ATGCACAGCGCATTGCCCCTTGGGATATATTTGGCAACCAAATTCTGGATGTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
CDS-3UTR CAA 90 bp GAGTCTCCCTGTAAACAATATTCATGGAAGCAGTGGCAAGTCGACCCTGAGGGTACATCCAGAATTTGGTaGCCAAATATATCCCAAGGG +
Preference number: 5 (lower is better)
Translates to: ESPCKQYSWKQWQVDPEGTSRIW*PNISQG
Trigger: CCCTTGGGATATATTTGGCAACCAAATTCTGGATGT...ACCCTCAGGGTCGACTTGCCACTGCTTCCATGAATATTGTTTACAGGGAGACTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
CDS-3UTR CAA 90 bp ACACAGTACAGTAGACCTCTAATAAAACCACATGATTCTCATCACAGTATTTACGGGCCGTCCGCCATCTaGGTGTTAAATCCCTCCTCC +
Preference number: 5 (lower is better)
Translates to: TQYSRPLIKPHDSHHSIYGPSAI*VLNPSS
Trigger: GGAGGAGGGATTTAACACCAAGATGGCGGACGGCCC...GTAAATACTGTGATGAGAATCATGTGGTTTTATTAGAGGTCTACTGTACTGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
CDS-3UTR CAA 90 bp GTGAGACCCCAGAGCAAGGTTACTAGAAATTATCTCACTGAACTAGAAATAAGCGTCCAAAACCCATCCTaGGTGTACGTGGTCTCACAG +
Preference number: 5 (lower is better)
Translates to: VRPQSKVTRNYLTELEISVQNPS*VYVVSQ
Trigger: CTGTGAGACCACGTACACCAAGGATGGGTTTTGGAC...GCTTATTTCTAGTTCAGTGAGATAATTTCTAGTAACCTTGCTCTGGGGTCTCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
CDS-3UTR CAA 90 bp TACATTAACCCTTTAATGAGCCAAGAATCAATGTCTAGGTCTGCTATAAACCCGCACCTAAGGATTGCCTaGACGTTCTGGGCGTCCACA +
Preference number: 5 (lower is better)
Translates to: YINPLMSQESMSRSAINPHLRIA*TFWAST
Trigger: TGTGGACGCCCAGAACGTCAAGGCAATCCTTAGGTG...CGGGTTTATAGCAGACCTAGACATTGATTCTTGGCTCATTAAAGGGTTAATGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218895.2
CDS-3UTR CAA 90 bp GAAAGAAATTGCACTGTAGCCCAAACGCCACCATACATTAACCCTTTAATGAGCATTTTCTTTGTCTGGTaGCCGTACATCGTAACCCGC +
Preference number: 5 (lower is better)
Translates to: ERNCTVAQTPPYINPLMSIFFVW*PYIVTR
Trigger: GCGGGTTACGATGTACGGCAACCAGACAAAGAAAAT...GCTCATTAAAGGGTTAATGTATGGTGGCGTTTGGGCTACAGTGCAATTTCTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
CDS-3UTR CAA 90 bp CCTGTAAACAATATTCATGGAAGCAGTGGCAAGTCGACCCTGAGGGTGTGGAAAGTAACTTTAAAGTGCTaGTATCTCCTGGCGTTCATT +
Preference number: 5 (lower is better)
Translates to: PVNNIHGSSGKSTLRVWKVTLKC*YLLAFI
Trigger: AATGAACGCCAGGAGATACAAGCACTTTAAAGTTAC...TTTCCACACCCTCAGGGTCGACTTGCCACTGCTTCCATGAATATTGTTTACAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041723.15
CDS TCA 90 bp CATCATATCTACATCCTGTCCTTTTGCTATAAGATAAGCAACAATTaGGGTATGTCCGAACTGAGCAGCCAAGTGGATACAGCTGCATCC +
Preference number: 5 (lower is better)
Translates to: HHIYILSFCYKISNN*GMSELSSQVDTAAS
Trigger: GGATGCAGCTGTATCCACTTGGCTGCTCAGTTCGGACATACCTCAATTGTTGCTTATCTTATAGCAAAAGGACAGGATGTAGATATGATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041723.15
ENSMUST00000219307.2
ENSMUST00000220247.2
CDS-3UTR CAA 90 bp TCTGCTGAGAAGGCTTCAGAAAGGGTTACCAATGTCAAAACATACTCAATATTGCCATATTGTGTCGCCTaGACGATGTCCCATGTGCTA +
Preference number: 5 (lower is better)
Translates to: SAEKASERVTNVKTYSILPYCVA*TMSHVL
Trigger: TAGCACATGGGACATCGTCAAGGCGACACAATATGG...CAATATTGAGTATGTTTTGACATTGGTAACCCTTTCTGAAGCCTTCTCAGCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
CDS-3UTR CAA 90 bp GTGAGACCCCAGAGCAAGGTTACTAGAAATTATCTCACTGAACTAGAAATAAGCCAGGTCTCCTCCAAGTaGATCCACAATAGCACCTTT +
Preference number: 5 (lower is better)
Translates to: VRPQSKVTRNYLTELEISQVSSK*IHNSTF
Trigger: AAAGGTGCTATTGTGGATCAACTTGGAGGAGACCTG...GCTTATTTCTAGTTCAGTGAGATAATTTCTAGTAACCTTGCTCTGGGGTCTCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
CDS-3UTR CAA 90 bp CATTTAACAGTAAGATCTGCTGAGAAGGCTTCAGAAAGGGTTACCAATGTCAAAATTTTCTTTGTCTGGTaGCCGTACATCGTAACCCGC +
Preference number: 5 (lower is better)
Translates to: HLTVRSAEKASERVTNVKIFFVW*PYIVTR
Trigger: GCGGGTTACGATGTACGGCAACCAGACAAAGAAAAT...TTTGACATTGGTAACCCTTTCTGAAGCCTTCTCAGCAGATCTTACTGTTAAATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
CDS-3UTR CAA 90 bp CCACCATACATTAACCCTTTAATGAGCCAAGAATCAATGTCTAGGTCTGCTATACAGGTCTCCTCCAAGTaGATCCACAATAGCACCTTT +
Preference number: 5 (lower is better)
Translates to: PPYINPLMSQESMSRSAIQVSSK*IHNSTF
Trigger: AAAGGTGCTATTGTGGATCAACTTGGAGGAGACCTG...TATAGCAGACCTAGACATTGATTCTTGGCTCATTAAAGGGTTAATGTATGGTGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220247.2
CDS CCA 72 bp AAGAGGTTCTCCATAGCCATGGTTATAGTGGCTCTGTaGTTTGATTTCCTCCGGGTGGAGAAGGGGCACGCA +
Preference number: 6 (lower is better)
Translates to: KRFSIAMVIVAL*FDFLRVEKGHA
Trigger: TGCGTGCCCCTTCTCCACCCGGAGGAAATCAAACCACAGAGCCACTATAACCATGGCTATGGAGAACCTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000220247.2
CDS CAA 72 bp CACCTAAGGATTGCCTTGACGTTCTGGGCGTCCACATaGCCTCCGGCTTCCAGAAGAAGACTAATGACTGTG +
Preference number: 6 (lower is better)
Translates to: HLRIALTFWAST*PPASRRRLMTV
Trigger: CACAGTCATTAGTCTTCTTCTGGAAGCCGGAGGCAATGTGGACGCCCAGAACGTCAAGGCAATCCTTAGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218895.2
CDS TCA 72 bp CCTGCTAGGACTGCCCAGTGCAGAGCAGTGTTTTTGTaGTACTTGTCACCAAGGTTAACTGAAACATTGAAT +
Preference number: 6 (lower is better)
Translates to: PARTAQCRAVFL*YLSPRLTETLN
Trigger: ATTCAATGTTTCAGTTAACCTTGGTGACAAGTATCACAAAAACACTGCTCTGCACTGGGCAGTCCTAGCAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041723.15
ENSMUST00000218895.2
CDS TCA 72 bp TACATCCTGTCCTTTTGCTATAAGATAAGCAACAATTaGGGTATGTCCGAACTGAGCAGCCAAGTGGATACA +
Preference number: 6 (lower is better)
Translates to: YILSFCYKISNN*GMSELSSQVDT
Trigger: TGTATCCACTTGGCTGCTCAGTTCGGACATACCTCAATTGTTGCTTATCTTATAGCAAAAGGACAGGATGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041723.15
ENSMUST00000219307.2
ENSMUST00000220247.2