RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZDBF2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027520

Ensembl transcript IDs: ENSMUST00000029025.9, ENSMUST00000114132.8, ENSMUST00000126932.2, ENSMUST00000239483.2

Found 526 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCTaGACTCAATCCTTTCAGTGCAGGCGTGCTAGTCAAACAGCTGCC +
Preference number: 1 (lower is better)
Translates to: VISQRASDGGMDPAS*TQSFQCRRASQTAA
Trigger: GGCAGCTGTTTGACTAGCACGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR GCA 90 bp ATTCTCTCAGGCACCTGTCCATGCCATCCTGTCATCACTGTCAGATaGTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGGGG +
Preference number: 1 (lower is better)
Translates to: ILSGTCPCHPVITVR*YGTRRHGERWKALG
Trigger: CCCCAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGATGACAGGATGGCATGGACAGGTGCCTGAGAGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR TCA 90 bp CTGTTGGCAGGAGAGAAAGGTTCTGGTAGTGGTGTCATTCAAGACTaGGAGCTGGAGGTACATTGCAGCAGAGCACTTGATTCACATGCA +
Preference number: 1 (lower is better)
Translates to: LLAGEKGSGSGVIQD*ELEVHCSRALDSHA
Trigger: TGCATGTGAATCAAGTGCTCTGCTGCAATGTACCTCCAGCTCTCAGTCTTGAATGACACCACTACCAGAACCTTTCTCTCCTGCCAACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR TCA 90 bp TTCTCAGTTACCTGCAAGCACTCCACCGTGAAAGGATTGAGAGCATaGGGTGATGTGTTGATGGTGAAAATGAGAACTGAGCACAGGGAA +
Preference number: 1 (lower is better)
Translates to: FSVTCKHSTVKGLRA*GDVLMVKMRTEHRE
Trigger: TTCCCTGTGCTCAGTTCTCATTTTCACCATCAACACATCACCTCATGCTCTCAATCCTTTCACGGTGGAGTGCTTGCAGGTAACTGAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR TCA 90 bp AATGCCATGCTACCAAGTACAGACAGGCGAGAAACTGCTCCACACTaGGGAAACAACAAAGTATCTATGAAGTCCATAACTGTGGATCAA +
Preference number: 1 (lower is better)
Translates to: NAMLPSTDRRETAPH*GNNKVSMKSITVDQ
Trigger: TTGATCCACAGTTATGGACTTCATAGATACTTTGTTGTTTCCTCAGTGTGGAGCAGTTTCTCGCCTGTCTGTACTTGGTAGCATGGCATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR GCA 90 bp GTACCTTCAAAATGCCATGCTACCAAGTACAGACAGGCGAGAAACTaGTCCACACTGAGGAAACAACAAAGTATCTATGAAGTCCATAAC +
Preference number: 1 (lower is better)
Translates to: VPSKCHATKYRQARN*STLRKQQSIYEVHN
Trigger: GTTATGGACTTCATAGATACTTTGTTGTTTCCTCAGTGTGGAGCAGTTTCTCGCCTGTCTGTACTTGGTAGCATGGCATTTTGAAGGTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR CCA 90 bp AGGCTCCCAAATACAAAGATCAAGGGACATGATACAGTTAAAGTTTaGGACACTGTGCTGTACTCAAGATCACCTCAATATGTACATATA +
Preference number: 1 (lower is better)
Translates to: RLPNTKIKGHDTVKV*DTVLYSRSPQYVHI
Trigger: TATATGTACATATTGAGGTGATCTTGAGTACAGCACAGTGTCCCAAACTTTAACTGTATCATGTCCCTTGATCTTTGTATTTGGGAGCCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR TCA 90 bp TCTCAAAACCAACTAACCAACAACAAAACACCTAATCATGATAAATaGAACAAAGGAGAGAGAGAGAGAGAGAAACATAAAGGTACTGCT +
Preference number: 1 (lower is better)
Translates to: SQNQLTNNKTPNHDK*NKGEREREKHKGTA
Trigger: AGCAGTACCTTTATGTTTCTCTCTCTCTCTCTCTCCTTTGTTTCATTTATCATGATTAGGTGTTTTGTTGTTGGTTAGTTGGTTTTGAGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR-3UTR TCA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCTGTGTTCCATCCAAGTaGAGGACTGAGGTCTCCATC +
Preference number: 2 (lower is better)
Translates to: LGLVISQRASDGGMDPASCVPSK*RTEVSI
Trigger: GATGGAGACCTCAGTCCTTCACTTGGATGGAACACA...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR CAA 90 bp GTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTaGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGAT +
Preference number: 2 (lower is better)
Translates to: VRCYGTRRHGERWKA*GLVISQRASDGGMD
Trigger: ATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR-3UTR TCA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCGATCCAGGTCTTGACTaGACAAGAAAAGGGGATGCA +
Preference number: 2 (lower is better)
Translates to: LGLVISQRASDGGMDPASDPGLD*TRKGDA
Trigger: TGCATCCCCTTTTCTTGTTCAGTCAAGACCTGGATC...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR-3UTR TCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGTGTGTTCCATCCAAGTaGAGGACTGAGGTCTCCATC +
Preference number: 2 (lower is better)
Translates to: VRWWYGSCLLNSILSVQACVPSK*RTEVSI
Trigger: GATGGAGACCTCAGTCCTTCACTTGGATGGAACACA...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR-3UTR TCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGGATCCAGGTCTTGACTaGACAAGAAAAGGGGATGCA +
Preference number: 2 (lower is better)
Translates to: VRWWYGSCLLNSILSVQADPGLD*TRKGDA
Trigger: TGCATCCCCTTTTCTTGTTCAGTCAAGACCTGGATC...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR-3UTR GCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGAACAAGAAAAGGGGATaGATCTGCACCAGCTCAGTC +
Preference number: 2 (lower is better)
Translates to: VRWWYGSCLLNSILSVQANKKRG*ICTSSV
Trigger: GACTGAGCTGGTGCAGATGCATCCCCTTTTCTTGTT...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR-3UTR TCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGGGGTATGTGTGCAAATaGGAAAAGCTACAGAACTGC +
Preference number: 2 (lower is better)
Translates to: VRWWYGSCLLNSILSVQAGYVCK*EKLQNC
Trigger: GCAGTTCTGTAGCTTTTCTCATTTGCACACATACCC...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR-3UTR GCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGGCCAGCATCAACATTTaGATTCTCTTATTTATCATC +
Preference number: 2 (lower is better)
Translates to: VRWWYGSCLLNSILSVQAASINI*ILLFII
Trigger: GATGATAAATAAGAGAATGCAAATGTTGATGCTGGC...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR-3UTR CCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGTTTATTAATGGTGTCTaGGAGCTGCAAAAGACATTA +
Preference number: 2 (lower is better)
Translates to: VRWWYGSCLLNSILSVQAFINGV*ELQKTL
Trigger: TAATGTCTTTTGCAGCTCCCAGACACCATTAATAAA...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR-3UTR CCA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGGGAAGGCTTTGGGGTTaGTCATTTCCCAGAGGGCGT +
Preference number: 2 (lower is better)
Translates to: LYEVNREDDSKGIETRRWGRLWG*SFPRGR
Trigger: ACGCCCTCTGGGAAATGACCAACCCCAAAGCCTTCC...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR-3UTR GCA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGGCCAGCATCAACATTTaGATTCTCTTATTTATCATC +
Preference number: 2 (lower is better)
Translates to: ITVRCYGTRRHGERWKALASINI*ILLFII
Trigger: GATGATAAATAAGAGAATGCAAATGTTGATGCTGGC...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR-3UTR GCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTTGGTGGTATGGATCCTaGCTCCTGAACTCAATCCTT +
Preference number: 2 (lower is better)
Translates to: KSLTNKCSKSVILGSEALWWYGS*LLNSIL
Trigger: AAGGATTGAGTTCAGGAGGCAGGATCCATACCACCA...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR-3UTR GCA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGTCAGGCACCTGTCCATaGCATCCTGTCATCACTGTC +
Preference number: 2 (lower is better)
Translates to: LYEVNREDDSKGIETRRWSGTCP*HPVITV
Trigger: GACAGTGATGACAGGATGGCATGGACAGGTGCCTGA...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR-3UTR CCA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTAGACACGGAGAGAGATaGAAGGCTTTGGGGTTGGTC +
Preference number: 2 (lower is better)
Translates to: KCSKSVILGSEALMSLFSRHGER*KALGLV
Trigger: GACCAACCCCAAAGCCTTCCATCTCTCTCCGTGTCT...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR-3UTR TCA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCTGTGTTCCATCCAAGTaGAGGACTGAGGTCTCCATC +
Preference number: 2 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSCVPSK*RTEVSI
Trigger: GATGGAGACCTCAGTCCTTCACTTGGATGGAACACA...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR-3UTR CCA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTCACTGTCAGATGCTATaGCACCAGAAGACACGGAGA +
Preference number: 2 (lower is better)
Translates to: KCSKSVILGSEALMSLFSHCQML*HQKTRR
Trigger: TCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTG...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR-3UTR GCA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCAACAAGAAAAGGGGATaGATCTGCACCAGCTCAGTC +
Preference number: 2 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSNKKRG*ICTSSV
Trigger: GACTGAGCTGGTGCAGATGCATCCCCTTTTCTTGTT...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR-3UTR GCA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTAACAAGAAAAGGGGATaGATCTGCACCAGCTCAGTC +
Preference number: 2 (lower is better)
Translates to: KCSKSVILGSEALMSLFSNKKRG*ICTSSV
Trigger: GACTGAGCTGGTGCAGATGCATCCCCTTTTCTTGTT...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR-3UTR GCA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTTGGTGGTATGGATCCTaGCTCCTGAACTCAATCCTT +
Preference number: 2 (lower is better)
Translates to: KCSKSVILGSEALMSLFSWWYGS*LLNSIL
Trigger: AAGGATTGAGTTCAGGAGGCAGGATCCATACCACCA...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR-3UTR GCA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGTGGTGGTATGGATCCTaGCTCCTGAACTCAATCCTT +
Preference number: 2 (lower is better)
Translates to: LYEVNREDDSKGIETRRWWWYGS*LLNSIL
Trigger: AAGGATTGAGTTCAGGAGGCAGGATCCATACCACCA...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR-3UTR GCA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGGTCATCACTGTCAGATaGTATGGCACCAGAAGACAC +
Preference number: 2 (lower is better)
Translates to: LYEVNREDDSKGIETRRWVITVR*YGTRRH
Trigger: GTGTCTTCTGGTGCCATAGCATCTGACAGTGATGAC...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR-3UTR CCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTTTTCCCCACCAAAGCTaGGAAAAGTATGTGCATTCA +
Preference number: 2 (lower is better)
Translates to: KSLTNKCSKSVILGSEALFPHQS*EKYVHS
Trigger: TGAATGCACATACTTTTCCCAGCTTTGGTGGGGAAA...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR-3UTR TCA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTGGGTATGTGTGCAAATaGGAAAAGCTACAGAACTGC +
Preference number: 2 (lower is better)
Translates to: KCSKSVILGSEALMSLFSGYVCK*EKLQNC
Trigger: GCAGTTCTGTAGCTTTTCTCATTTGCACACATACCC...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR-3UTR GCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTGCTGGGAAAAGTATGTaGATTCAAGTCTCAAATGTG +
Preference number: 2 (lower is better)
Translates to: KSLTNKCSKSVILGSEALAGKSM*IQVSNV
Trigger: CACATTTGAGACTTGAATGCACATACTTTTCCCAGC...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR-3UTR CCA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGTTTCCCCACCAAAGCTaGGAAAAGTATGTGCATTCA +
Preference number: 2 (lower is better)
Translates to: LYEVNREDDSKGIETRRWFPHQS*EKYVHS
Trigger: TGAATGCACATACTTTTCCCAGCTTTGGTGGGGAAA...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR-3UTR CCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTTTAAATAATGGCCCCTaGAACAAAACCACGTTGATA +
Preference number: 2 (lower is better)
Translates to: KSLTNKCSKSVILGSEALLNNGP*NKTTLI
Trigger: TATCAACGTGGTTTTGTTCCAGGGGCCATTATTTAA...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR-3UTR CCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTTTTATTAATGGTGTCTaGGAGCTGCAAAAGACATTA +
Preference number: 2 (lower is better)
Translates to: KSLTNKCSKSVILGSEALFINGV*ELQKTL
Trigger: TAATGTCTTTTGCAGCTCCCAGACACCATTAATAAA...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR-3UTR TCA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGTATGTCTCCTCACTTTaGATTTACTTGAGTTGGCAT +
Preference number: 2 (lower is better)
Translates to: LYEVNREDDSKGIETRRWYVSSL*IYLSWH
Trigger: ATGCCAACTCAAGTAAATTCAAAGTGAGGAGACATA...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR-3UTR GCA 90 bp ACAACCTATGTATCTTTGGTTAAACAATTTTCTCGCCAGCATCAACATTTGCATGCTGGGAAAAGTATGTaGATTCAAGTCTCAAATGTG +
Preference number: 2 (lower is better)
Translates to: TTYVSLVKQFSRQHQHLHAGKSM*IQVSNV
Trigger: CACATTTGAGACTTGAATGCACATACTTTTCCCAGC...ATGCAAATGTTGATGCTGGCGAGAAAATTGTTTAACCAAAGATACATAGGTTGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR-3UTR CCA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGTTAAATAATGGCCCCTaGAACAAAACCACGTTGATA +
Preference number: 2 (lower is better)
Translates to: LYEVNREDDSKGIETRRWLNNGP*NKTTLI
Trigger: TATCAACGTGGTTTTGTTCCAGGGGCCATTATTTAA...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR-3UTR CCA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTTTAAATAATGGCCCCTaGAACAAAACCACGTTGATA +
Preference number: 2 (lower is better)
Translates to: KCSKSVILGSEALMSLFSLNNGP*NKTTLI
Trigger: TATCAACGTGGTTTTGTTCCAGGGGCCATTATTTAA...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR-3UTR CCA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGCAACCTATGTATCTTTaGTTAAACAATTTTCTCGCC +
Preference number: 2 (lower is better)
Translates to: LYEVNREDDSKGIETRRWQPMYL*LNNFLA
Trigger: GGCGAGAAAATTGTTTAACCAAAGATACATAGGTTG...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR-3UTR CCA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTCAACCTATGTATCTTTaGTTAAACAATTTTCTCGCC +
Preference number: 2 (lower is better)
Translates to: KCSKSVILGSEALMSLFSQPMYL*LNNFLA
Trigger: GGCGAGAAAATTGTTTAACCAAAGATACATAGGTTG...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR CCA 72 bp CCAGAAGACACGGAGAGAGATGGAAGGCTTTGGGGTTaGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGG +
Preference number: 3 (lower is better)
Translates to: PEDTERDGRLWG*SFPRGRQMVVW
Trigger: CCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAAAGCCTTCCATCTCTCTCCGTGTCTTCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR CCA 72 bp ATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTaGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTG +
Preference number: 3 (lower is better)
Translates to: MAPEDTERDGRL*GWSFPRGRQMV
Trigger: CACCATCTGACGCCCTCTGGGAAATGACCAACCCCAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR CCA 72 bp GTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATaGAAGGCTTTGGGGTTGGTCATTTCCCAGAGGGCG +
Preference number: 3 (lower is better)
Translates to: VRCYGTRRHGER*KALGLVISQRA
Trigger: CGCCCTCTGGGAAATGACCAACCCCAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR TCA 72 bp CAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCTaGACTCAATCCTTTCAGTGCAGGCGTGCTAGTCAA +
Preference number: 3 (lower is better)
Translates to: QRASDGGMDPAS*TQSFQCRRASQ
Trigger: TTGACTAGCACGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGACGCCCTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR TCA 72 bp AGACTGAGAGCTGGAGGTACATTGCAGCAGAGCACTTaGTTCACATGCACAAGGCCCTGGATTCAACTCTCA +
Preference number: 3 (lower is better)
Translates to: RLRAGGTLQQST*FTCTRPWIQLS
Trigger: TGAGAGTTGAATCCAGGGCCTTGTGCATGTGAATCAAGTGCTCTGCTGCAATGTACCTCCAGCTCTCAGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR GCA 72 bp AGCACTTATGTCACTATTCTCTCAGGCACCTGTCCATaGCATCCTGTCATCACTGTCAGATGCTATGGCACC +
Preference number: 3 (lower is better)
Translates to: STYVTILSGTCP*HPVITVRCYGT
Trigger: GGTGCCATAGCATCTGACAGTGATGACAGGATGGCATGGACAGGTGCCTGAGAGAATAGTGACATAAGTGCT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR-3UTR CAA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCACAAAACTGAGATACTaGAAAACCGAGATAGCACAA +
Preference number: 3 (lower is better)
Translates to: LGLVISQRASDGGMDPASTKLRY*KTEIAQ
Trigger: TTGTGCTATCTCGGTTTTCAAGTATCTCAGTTTTGT...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR TCA 72 bp GGAGAGAAAGGTTCTGGTAGTGGTGTCATTCAAGACTaGGAGCTGGAGGTACATTGCAGCAGAGCACTTGAT +
Preference number: 3 (lower is better)
Translates to: GEKGSGSGVIQD*ELEVHCSRALD
Trigger: ATCAAGTGCTCTGCTGCAATGTACCTCCAGCTCTCAGTCTTGAATGACACCACTACCAGAACCTTTCTCTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR-3UTR CAA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGACTCTTTACACAATATaGTCCACACACTGTTTCACC +
Preference number: 3 (lower is better)
Translates to: VRWWYGSCLLNSILSVQATLYTI*STHCFT
Trigger: GGTGAAACAGTGTGTGGACAATATTGTGTAAAGAGT...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR-3UTR CAA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGACAAAACTGAGATACTaGAAAACCGAGATAGCACAA +
Preference number: 3 (lower is better)
Translates to: VRWWYGSCLLNSILSVQATKLRY*KTEIAQ
Trigger: TTGTGCTATCTCGGTTTTCAAGTATCTCAGTTTTGT...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR TCA 72 bp ACCTGCAAGCACTCCACCGTGAAAGGATTGAGAGCATaGGGTGATGTGTTGATGGTGAAAATGAGAACTGAG +
Preference number: 3 (lower is better)
Translates to: TCKHSTVKGLRA*GDVLMVKMRTE
Trigger: CTCAGTTCTCATTTTCACCATCAACACATCACCTCATGCTCTCAATCCTTTCACGGTGGAGTGCTTGCAGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR CCA 72 bp AAGGTTCTGGTAGTGGTGTCATTCAAGACTGAGAGCTaGAGGTACATTGCAGCAGAGCACTTGATTCACATG +
Preference number: 3 (lower is better)
Translates to: KVLVVVSFKTES*RYIAAEHLIHM
Trigger: CATGTGAATCAAGTGCTCTGCTGCAATGTACCTCCAGCTCTCAGTCTTGAATGACACCACTACCAGAACCTT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR CCA 72 bp TTAACCAAGAGGCTGCCAACACACTTCCTGGCTCTGTaGCACAACTGGATTAAAACCCAGCAATTTGTTGGT +
Preference number: 3 (lower is better)
Translates to: LTKRLPTHFLAL*HNWIKTQQFVG
Trigger: ACCAACAAATTGCTGGGTTTTAATCCAGTTGTGCCACAGAGCCAGGAAGTGTGTTGGCAGCCTCTTGGTTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR-3UTR CAA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGTGGAAGGCTTTGGGGTaGGTCATTTCCCAGAGGGCG +
Preference number: 3 (lower is better)
Translates to: LYEVNREDDSKGIETRRWWKALG*VISQRA
Trigger: CGCCCTCTGGGAAATGACCAACCCCAAAGCCTTCCA...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR-3UTR CAA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTTGGAAGGCTTTGGGGTaGGTCATTTCCCAGAGGGCG +
Preference number: 3 (lower is better)
Translates to: KCSKSVILGSEALMSLFSWKALG*VISQRA
Trigger: CGCCCTCTGGGAAATGACCAACCCCAAAGCCTTCCA...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR-3UTR CAA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGGAGAGATGGAAGGCTTaGGGGTTGGTCATTTCCCAG +
Preference number: 3 (lower is better)
Translates to: LYEVNREDDSKGIETRRWERWKA*GLVISQ
Trigger: CTGGGAAATGACCAACCCCAAAGCCTTCCATCTCTC...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR TCA 72 bp CTACCAAGTACAGACAGGCGAGAAACTGCTCCACACTaGGGAAACAACAAAGTATCTATGAAGTCCATAACT +
Preference number: 3 (lower is better)
Translates to: LPSTDRRETAPH*GNNKVSMKSIT
Trigger: AGTTATGGACTTCATAGATACTTTGTTGTTTCCTCAGTGTGGAGCAGTTTCTCGCCTGTCTGTACTTGGTAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR-3UTR CAA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTACTCTTTACACAATATaGTCCACACACTGTTTCACC +
Preference number: 3 (lower is better)
Translates to: KSLTNKCSKSVILGSEALTLYTI*STHCFT
Trigger: GGTGAAACAGTGTGTGGACAATATTGTGTAAAGAGT...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR-3UTR CAA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTAAAAAGATCCAGGTCTaGACTGAACAAGAAAAGGGG +
Preference number: 3 (lower is better)
Translates to: KCSKSVILGSEALMSLFSKKIQV*TEQEKG
Trigger: CCCCTTTTCTTGTTCAGTCAAGACCTGGATCTTTTT...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR GCA 72 bp TCAAGGGACATGATACAGTTAAAGTTTGGGACACTGTaGTGTACTCAAGATCACCTCAATATGTACATATAC +
Preference number: 3 (lower is better)
Translates to: SRDMIQLKFGTL*CTQDHLNMYIY
Trigger: GTATATGTACATATTGAGGTGATCTTGAGTACAGCACAGTGTCCCAAACTTTAACTGTATCATGTCCCTTGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR-3UTR CAA 90 bp ACAACCTATGTATCTTTGGTTAAACAATTTTCTCGCCAGCATCAACATTTGCATAAAAAGATCCAGGTCTaGACTGAACAAGAAAAGGGG +
Preference number: 3 (lower is better)
Translates to: TTYVSLVKQFSRQHQHLHKKIQV*TEQEKG
Trigger: CCCCTTTTCTTGTTCAGTCAAGACCTGGATCTTTTT...ATGCAAATGTTGATGCTGGCGAGAAAATTGTTTAACCAAAGATACATAGGTTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR CCA 72 bp AATACAAAGATCAAGGGACATGATACAGTTAAAGTTTaGGACACTGTGCTGTACTCAAGATCACCTCAATAT +
Preference number: 3 (lower is better)
Translates to: NTKIKGHDTVKV*DTVLYSRSPQY
Trigger: ATATTGAGGTGATCTTGAGTACAGCACAGTGTCCCAAACTTTAACTGTATCATGTCCCTTGATCTTTGTATT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR-3UTR CAA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGACAAAACTGAGATACTaGAAAACCGAGATAGCACAA +
Preference number: 3 (lower is better)
Translates to: LYEVNREDDSKGIETRRWTKLRY*KTEIAQ
Trigger: TTGTGCTATCTCGGTTTTCAAGTATCTCAGTTTTGT...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR CCA 72 bp TTAACCTCCATTACAAGAGTGTTTATTAATGGTGTCTaGGAGCTGCAAAAGACATTAATACCTACAAAGAAT +
Preference number: 3 (lower is better)
Translates to: LTSITRVFINGV*ELQKTLIPTKN
Trigger: ATTCTTTGTAGGTATTAATGTCTTTTGCAGCTCCCAGACACCATTAATAAACACTCTTGTAATGGAGGTTAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGTCCAGGATCTGCTGCTaGTGCCGCTGCTGCCGCCGC +
Preference number: 4 (lower is better)
Translates to: VRWWYGSCLLNSILSVQASRICC*CRCCRR
Trigger: GCGGCGGCAGCAGCGGCAGCAGCAGCAGATCCTGGA...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGCTCTTCAGCACCAGCTaGGAGAACCGGGGCGCACGG +
Preference number: 4 (lower is better)
Translates to: VRWWYGSCLLNSILSVQALFSTS*ENRGAR
Trigger: CCGTGCGCCCCGGTTCTCCCAGCTGGTGCTGAAGAG...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCCACCACCACTTCAGGTaGTCCAGGATCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: LGLVISQRASDGGMDPASHHHFR*SRICCC
Trigger: GCAGCAGCAGATCCTGGATCACCTGAAGTGGTGGTG...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCACAGGCACCTGGGGATaGTCCAGAGCTGCATCACTG +
Preference number: 4 (lower is better)
Translates to: LGLVISQRASDGGMDPASTGTWG*SRAASL
Trigger: CAGTGATGCAGCTCTGGACCATCCCCAGGTGCCTGT...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGCTGGGGCTTCCTTCTTaGACAGGCACCTGGGGATGG +
Preference number: 4 (lower is better)
Translates to: VRWWYGSCLLNSILSVQALGLPS*TGTWGW
Trigger: CCATCCCCAGGTGCCTGTTCAAGAAGGAAGCCCCAG...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCCCAGCATTGGAAAGATaGGCAGGCAGCTCTGCAGGT +
Preference number: 4 (lower is better)
Translates to: LGLVISQRASDGGMDPASPALER*AGSSAG
Trigger: ACCTGCAGAGCTGCCTGCTCATCTTTCCAATGCTGG...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCATGAGCAGGCAGCTCTaGAGGTCCTGCAGTAGTGCT +
Preference number: 4 (lower is better)
Translates to: LGLVISQRASDGGMDPASMSRQL*RSCSSA
Trigger: AGCACTACTGCAGGACCTGCAGAGCTGCCTGCTCAT...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGCTCTTCAGCACCAGCTaGGAGAACCGGGGCGCACGG +
Preference number: 4 (lower is better)
Translates to: ITVRCYGTRRHGERWKALLFSTS*ENRGAR
Trigger: CCGTGCGCCCCGGTTCTCCCAGCTGGTGCTGAAGAG...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGCACCACCACTTCAGGTaGTCCAGGATCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: VRWWYGSCLLNSILSVQAHHHFR*SRICCC
Trigger: GCAGCAGCAGATCCTGGATCACCTGAAGTGGTGGTG...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCAGACCGCTCAGTAACTaGCAGAAGAGGGGAATCGGA +
Preference number: 4 (lower is better)
Translates to: LGLVISQRASDGGMDPASRPLSN*QKRGIG
Trigger: TCCGATTCCCCTCTTCTGTCAGTTACTGAGCGGTCT...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCTCAGCACTACTGGGCTaGTCTTCATTTCCCTGTCCG +
Preference number: 4 (lower is better)
Translates to: LGLVISQRASDGGMDPASSALLG*SSFPCP
Trigger: CGGACAGGGAAATGAAGAGCAGCCCAGTAGTGCTGA...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCCCCGGAATCCTCACATaGTTCAGAGCTACCACTTCC +
Preference number: 4 (lower is better)
Translates to: LGLVISQRASDGGMDPASPGILT*FRATTS
Trigger: GGAAGTGGTAGCTCTGAACCATGTGAGGATTCCGGG...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGCTGGGGCTTCCTTCTTaGACAGGCACCTGGGGATGG +
Preference number: 4 (lower is better)
Translates to: ITVRCYGTRRHGERWKALLGLPS*TGTWGW
Trigger: CCATCCCCAGGTGCCTGTTCAAGAAGGAAGCCCCAG...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCTCCTTGTCAGGTTTTTaGAGGTGGCCTGCTACTGAC +
Preference number: 4 (lower is better)
Translates to: LGLVISQRASDGGMDPASSLSGF*RWPATD
Trigger: GTCAGTAGCAGGCCACCTTCAAAAACCTGACAAGGA...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCCTCATCAACCAGGTTTaGATGGGTGTTCCTCACAGG +
Preference number: 4 (lower is better)
Translates to: LGLVISQRASDGGMDPASLINQV*MGVPHR
Trigger: CCTGTGAGGAACACCCATGCAAACCTGGTTGATGAG...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCGCTAGGGCCCTGATCTaGGGAGTCAAAGTATGTTTC +
Preference number: 4 (lower is better)
Translates to: LGLVISQRASDGGMDPASARALI*GVKVCF
Trigger: GAAACATACTTTGACTCCCCAGATCAGGGCCCTAGC...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR CAA 72 bp ACCAGAAGACACGGAGAGAGATGGAAGGCTTTGGGGTaGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATG +
Preference number: 4 (lower is better)
Translates to: TRRHGERWKALG*VISQRASDGGM
Trigger: CATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR CAA 72 bp TATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTaGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGT +
Preference number: 4 (lower is better)
Translates to: YGTRRHGERWKA*GLVISQRASDG
Trigger: ACCATCTGACGCCCTCTGGGAAATGACCAACCCCAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGAGACCGCTCAGTAACTaGCAGAAGAGGGGAATCGGA +
Preference number: 4 (lower is better)
Translates to: VRWWYGSCLLNSILSVQARPLSN*QKRGIG
Trigger: TCCGATTCCCCTCTTCTGTCAGTTACTGAGCGGTCT...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGAGGTGGGTCAGCTTCTaGCTGCAGATGAACAGCAGA +
Preference number: 4 (lower is better)
Translates to: VRWWYGSCLLNSILSVQARWVSF*LQMNSR
Trigger: TCTGCTGTTCATCTGCAGTCAGAAGCTGACCCACCT...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGTCTTTGCAAGCCACTTaGGGTGGGTCAGCTTCTGAC +
Preference number: 4 (lower is better)
Translates to: VRWWYGSCLLNSILSVQASLQAT*GGSASD
Trigger: GTCAGAAGCTGACCCACCTCAAGTGGCTTGCAAAGA...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCTCGGTCGCTTTCAGCTaGATCCAAATAGCCAGCTTT +
Preference number: 4 (lower is better)
Translates to: LGLVISQRASDGGMDPASSVAFS*IQIASF
Trigger: AAAGCTGGCTATTTGGATTCAGCTGAAAGCGACCGA...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCAATTCCAAGGACTGCTaGTGTCCCCGTTCCAGTTTT +
Preference number: 4 (lower is better)
Translates to: LGLVISQRASDGGMDPASNSKDC*CPRSSF
Trigger: AAAACTGGAACGGGGACAGCAGCAGTCCTTGGAATT...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCTCTTTTGGGTCAGCATaGCCCTCTTTCAAAGCAGCT +
Preference number: 4 (lower is better)
Translates to: LGLVISQRASDGGMDPASSFGSA*PSFKAA
Trigger: AGCTGCTTTGAAAGAGGGCCATGCTGACCCAAAAGA...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGAAGGTGGCCTGCTACTaGCTGACAGGGATCATTAGA +
Preference number: 4 (lower is better)
Translates to: VRWWYGSCLLNSILSVQAKVACY*LTGIIR
Trigger: TCTAATGATCCCTGTCAGTCAGTAGCAGGCCACCTT...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCGCTTCTGACTGCAGATaGACAGCAGAATTACATGCT +
Preference number: 4 (lower is better)
Translates to: LGLVISQRASDGGMDPASASDCR*TAELHA
Trigger: AGCATGTAATTCTGCTGTTCATCTGCAGTCAGAAGC...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCTATCACTGGTTTCTTTaGCAGTCATCTGAGGTGGCT +
Preference number: 4 (lower is better)
Translates to: LGLVISQRASDGGMDPASYHWFL*QSSEVA
Trigger: AGCCACCTCAGATGACTGTCAAAGAAACCAGTGATA...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCCTTAAGATCATCTTCTaGAACCTCTTCTCCTTCCCC +
Preference number: 4 (lower is better)
Translates to: LGLVISQRASDGGMDPASLKIIF*NLFSFP
Trigger: GGGGAAGGAGAAGAGGTTGCAGAAGATGATCTTAAG...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGGACGTCTGCTCTGTCTaGTCAGGCTTCTGTGCTGAG +
Preference number: 4 (lower is better)
Translates to: ITVRCYGTRRHGERWKALDVCSV*SGFCAE
Trigger: CTCAGCACAGAAGCCTGACCAGACAGAGCAGACGTC...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCCACAGCCTCTACAGATaGAACTGTCACAAACTGAAC +
Preference number: 4 (lower is better)
Translates to: LGLVISQRASDGGMDPASHSLYR*NCHKLN
Trigger: GTTCAGTTTGTGACAGTTCCATCTGTAGAGGCTGTG...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCCTTTCCGAAGACTGGTaGCTTCTCCAGTTTTCTGTA +
Preference number: 4 (lower is better)
Translates to: LGLVISQRASDGGMDPASLSEDW*LLQFSV
Trigger: TACAGAAAACTGGAGAAGCCACCAGTCTTCGGAAAG...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGGTCAGGCTTCTGTGCTaGGAACTAAACAAGTGCTGT +
Preference number: 4 (lower is better)
Translates to: VRWWYGSCLLNSILSVQAVRLLC*ELNKCC
Trigger: ACAGCACTTGTTTAGTTCTCAGCACAGAAGCCTGAC...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGCTCTTCAGAACTCACTaGGCGCTTCTGTTTCAGAAG +
Preference number: 4 (lower is better)
Translates to: VRWWYGSCLLNSILSVQALFRTH*ALLFQK
Trigger: CTTCTGAAACAGAAGCGCTCAGTGAGTTCTGAAGAG...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGAGACCGCTCAGTAACTaGCAGAAGAGGGGAATCGGA +
Preference number: 4 (lower is better)
Translates to: ITVRCYGTRRHGERWKALRPLSN*QKRGIG
Trigger: TCCGATTCCCCTCTTCTGTCAGTTACTGAGCGGTCT...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCAACTACTGCCTGGACTaGGAAACCAGAATCCAAATT +
Preference number: 4 (lower is better)
Translates to: LGLVISQRASDGGMDPASNYCLD*ETRIQI
Trigger: AATTTGGATTCTGGTTTCTCAGTCCAGGCAGTAGTT...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGCAATGGTCAATGTCCTaGACTACTTCAATGTGGCCG +
Preference number: 4 (lower is better)
Translates to: VRWWYGSCLLNSILSVQAQWSMS*TTSMWP
Trigger: CGGCCACATTGAAGTAGTTCAGGACATTGACCATTG...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGTCTTTGCAAGCCACTTaGGGTGGGTCAGCTTCTGAC +
Preference number: 4 (lower is better)
Translates to: ITVRCYGTRRHGERWKALSLQAT*GGSASD
Trigger: GTCAGAAGCTGACCCACCTCAAGTGGCTTGCAAAGA...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGTCGAACTGCAACTTCTaGGTGTTCCTGAGAAGTACC +
Preference number: 4 (lower is better)
Translates to: VRWWYGSCLLNSILSVQASNCNF*VFLRST
Trigger: GGTACTTCTCAGGAACACGCAGAAGTTGCAGTTCGA...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGTTCCTCACAGGATTCTaGTGTCTTGATGCTGCTGGA +
Preference number: 4 (lower is better)
Translates to: VRWWYGSCLLNSILSVQAFLTGF*CLDAAG
Trigger: TCCAGCAGCATCAAGACAGCAGAATCCTGTGAGGAA...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGTCAGCACTACTGGGCTaGTCTTCATTTCCCTGTCCG +
Preference number: 4 (lower is better)
Translates to: ITVRCYGTRRHGERWKALSALLG*SSFPCP
Trigger: CGGACAGGGAAATGAAGAGCAGCCCAGTAGTGCTGA...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCCAGGACAAGGATTGCTaGTGTTTTCTTTCAAACTGG +
Preference number: 4 (lower is better)
Translates to: LGLVISQRASDGGMDPASQDKDC*CFLSNW
Trigger: CCAGTTTGAAAGAAAACAGCAGCAATCCTTGTCCTG...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCGCACACAAGTTACACTaGCCTTGTCTTCTATGTCAA +
Preference number: 4 (lower is better)
Translates to: LGLVISQRASDGGMDPASAHKLH*PCLLCQ
Trigger: TTGACATAGAAGACAAGGGCAGTGTAACTTGTGTGC...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCGTCTTGGTAATTATATaGGTGGTGTCGCAGAACATC +
Preference number: 4 (lower is better)
Translates to: LGLVISQRASDGGMDPASVLVII*VVSQNI
Trigger: GATGTTCTGCGACACCACCCATATAATTACCAAGAC...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCCTGGAAATTATCCTTTaGAACTTGAGTAGCACCCAC +
Preference number: 4 (lower is better)
Translates to: LGLVISQRASDGGMDPASLEIIL*NLSSTH
Trigger: GTGGGTGCTACTCAAGTTCCAAAGGATAATTTCCAG...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCTGTCGGTATTTGTTGTaGAACTCAAGCTTCTCAGGT +
Preference number: 4 (lower is better)
Translates to: LGLVISQRASDGGMDPASCRYLL*NSSFSG
Trigger: ACCTGAGAAGCTTGAGTTCCACAACAAATACCGACA...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGTCTTTAGTTTTGGGTTaGGATGATGGGTTGCTAGGG +
Preference number: 4 (lower is better)
Translates to: VRWWYGSCLLNSILSVQASLVLG*DDGLLG
Trigger: CCCTAGCAACCCATCATCTCAACCCAAAACTAAAGA...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGGACGAGACCCACAACTaGACCTCTCTTCAGAACTCA +
Preference number: 4 (lower is better)
Translates to: ITVRCYGTRRHGERWKALDETHN*TSLQNS
Trigger: TGAGTTCTGAAGAGAGGTTCAGTTGTGGGTCTCGTC...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGGTAATTCCAAAACCCTaGGCATCATCCCTCTTACCT +
Preference number: 4 (lower is better)
Translates to: VRWWYGSCLLNSILSVQAVIPKP*ASSLLP
Trigger: AGGTAAGAGGGATGATGCTCAGGGTTTTGGAATTAC...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCATTGATGTGGTGTTCTaGTTAAGGTCAGACCTAATG +
Preference number: 4 (lower is better)
Translates to: LGLVISQRASDGGMDPASIDVVF*LRSDLM
Trigger: CATTAGGTCTGACCTTAATCAGAACACCACATCAAT...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGTCAGTTATCCCAGCTTaGGCCTTTTTCTTCTTCTGG +
Preference number: 4 (lower is better)
Translates to: VRWWYGSCLLNSILSVQASVIPA*AFFFFW
Trigger: CCAGAAGAAGAAAAAGGCTCAAGCTGGGATAACTGA...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCGGTGGATTCAAAGACTaGTCTTCCTTCATACTTAGA +
Preference number: 4 (lower is better)
Translates to: LGLVISQRASDGGMDPASGGFKD*SSFILR
Trigger: TCTAAGTATGAAGGAAGATCAGTCTTTGAATCCACC...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTTCCAGGATCTGCTGCTaGTGCCGCTGCTGCCGCCGC +
Preference number: 4 (lower is better)
Translates to: KCSKSVILGSEALMSLFSSRICC*CRCCRR
Trigger: GCGGCGGCAGCAGCGGCAGCAGCAGCAGATCCTGGA...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCCTTCAGGACAAGGATTaGTGCTGTTTTCTTTCAAAC +
Preference number: 4 (lower is better)
Translates to: LGLVISQRASDGGMDPASLQDKD*CCFLSN
Trigger: GTTTGAAAGAAAACAGCAGCAATCCTTGTCCTGAAG...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGCAAGGTCTGCTTCTTTaGAAGCCACTTGAGGTGGGT +
Preference number: 4 (lower is better)
Translates to: ITVRCYGTRRHGERWKALQGLLL*KPLEVG
Trigger: ACCCACCTCAAGTGGCTTGCAAAGAAGCAGACCTTG...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCCTGTTTCAGAAGTGTTaGCTTGTTAAGAACCAAACG +
Preference number: 4 (lower is better)
Translates to: LGLVISQRASDGGMDPASLFQKC*LVKNQT
Trigger: CGTTTGGTTCTTAACAAGCCAACACTTCTGAAACAG...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCATACATTTATTTCTCTaGCGGTCAGTTCAGATAGGG +
Preference number: 4 (lower is better)
Translates to: LGLVISQRASDGGMDPASIHLFL*RSVQIG
Trigger: CCCTATCTGAACTGACCGCCAGAGAAATAAATGTAT...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGGTGCTTCAGCACTACTaGGCTGCTCTTCATTTCCCT +
Preference number: 4 (lower is better)
Translates to: ITVRCYGTRRHGERWKALVLQHY*AALHFP
Trigger: AGGGAAATGAAGAGCAGCCCAGTAGTGCTGAAGCAC...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCCTCTTTCAAAGCAGCTaGTTGAGGTTTTTCAGTCAT +
Preference number: 4 (lower is better)
Translates to: LGLVISQRASDGGMDPASLFQSS*LRFFSH
Trigger: ATGACTGAAAAACCTCAACCAGCTGCTTTGAAAGAG...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGCACAGCCTCTACAGATaGAACTGTCACAAACTGAAC +
Preference number: 4 (lower is better)
Translates to: VRWWYGSCLLNSILSVQAHSLYR*NCHKLN
Trigger: GTTCAGTTTGTGACAGTTCCATCTGTAGAGGCTGTG...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCGTCATATTCTCTCACTaGAAGAAGTCTCTTCCTTCT +
Preference number: 4 (lower is better)
Translates to: LGLVISQRASDGGMDPASVIFSH*KKSLPS
Trigger: AGAAGGAAGAGACTTCTTCCAGTGAGAGAATATGAC...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGCTCTTCAGAACTCACTaGGCGCTTCTGTTTCAGAAG +
Preference number: 4 (lower is better)
Translates to: ITVRCYGTRRHGERWKALLFRTH*ALLFQK
Trigger: CTTCTGAAACAGAAGCGCTCAGTGAGTTCTGAAGAG...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTCTGGGGCTTCCTTCTTaGACAGGCACCTGGGGATGG +
Preference number: 4 (lower is better)
Translates to: KSLTNKCSKSVILGSEALLGLPS*TGTWGW
Trigger: CCATCCCCAGGTGCCTGTTCAAGAAGGAAGCCCCAG...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGTTCAAAGCAGCTGGTTaGGGTTTTTCAGTCATTGTC +
Preference number: 4 (lower is better)
Translates to: VRWWYGSCLLNSILSVQAFKAAG*GFSVIV
Trigger: GACAATGACTGAAAAACCTCAACCAGCTGCTTTGAA...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGAGGCTGGCTAAGGACTaGATCAAGACAATCAGCAGT +
Preference number: 4 (lower is better)
Translates to: ITVRCYGTRRHGERWKALRLAKD*IKTISS
Trigger: ACTGCTGATTGTCTTGATTCAGTCCTTAGCCAGCCT...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGCCACTCGTTCATTTTTaGAACCACATCGAACTCTTG +
Preference number: 4 (lower is better)
Translates to: VRWWYGSCLLNSILSVQAPLVHF*NHIELL
Trigger: CAAGAGTTCGATGTGGTTTCAAAAATGAACGAGTGG...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGAACTACTGCCTGGACTaGGAAACCAGAATCCAAATT +
Preference number: 4 (lower is better)
Translates to: VRWWYGSCLLNSILSVQANYCLD*ETRIQI
Trigger: AATTTGGATTCTGGTTTCTCAGTCCAGGCAGTAGTT...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCTGGTTAACTACTATCTaGAAAGAGACGTCAGAATCA +
Preference number: 4 (lower is better)
Translates to: LGLVISQRASDGGMDPASWLTTI*KETSES
Trigger: TGATTCTGACGTCTCTTTTCAGATAGTAGTTAACCA...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCTTGAAATTGAGTTCATaGCCACAAGATGGACAAGTA +
Preference number: 4 (lower is better)
Translates to: LGLVISQRASDGGMDPASLKLSS*PQDGQV
Trigger: TACTTGTCCATCTTGTGGTCATGAACTCAATTTCAA...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGTTCCCAGAACTTGCTTaGATTCCACATCTCACTTCT +
Preference number: 4 (lower is better)
Translates to: VRWWYGSCLLNSILSVQAFPELA*IPHLTS
Trigger: AGAAGTGAGATGTGGAATTCAAGCAAGTTCTGGGAA...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp ACAACCTATGTATCTTTGGTTAAACAATTTTCTCGCCAGCATCAACATTTGCATTCCAGGATCTGCTGCTaGTGCCGCTGCTGCCGCCGC +
Preference number: 4 (lower is better)
Translates to: TTYVSLVKQFSRQHQHLHSRICC*CRCCRR
Trigger: GCGGCGGCAGCAGCGGCAGCAGCAGCAGATCCTGGA...ATGCAAATGTTGATGCTGGCGAGAAAATTGTTTAACCAAAGATACATAGGTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGTTCCTCACAGGATTCTaGTGTCTTGATGCTGCTGGA +
Preference number: 4 (lower is better)
Translates to: ITVRCYGTRRHGERWKALFLTGF*CLDAAG
Trigger: TCCAGCAGCATCAAGACAGCAGAATCCTGTGAGGAA...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGGCCTTTTTCTTCTTCTaGCTATCATGGTGGAAACAC +
Preference number: 4 (lower is better)
Translates to: VRWWYGSCLLNSILSVQAAFFFF*LSWWKH
Trigger: GTGTTTCCACCATGATAGCCAGAAGAAGAAAAAGGC...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCCTCTTCAGCACCAGCTaGGAGAACCGGGGCGCACGG +
Preference number: 4 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSLFSTS*ENRGAR
Trigger: CCGTGCGCCCCGGTTCTCCCAGCTGGTGCTGAAGAG...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGCAGTTTTTGAATAACTaGTGGTCGAACTGCAACTTC +
Preference number: 4 (lower is better)
Translates to: VRWWYGSCLLNSILSVQAQFLNN*WSNCNF
Trigger: GAAGTTGCAGTTCGACCATCAGTTATTCAAAAACTG...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGCCCCGTTCCAGTTTTTaGATAACTGATGGTCGAACT +
Preference number: 4 (lower is better)
Translates to: ITVRCYGTRRHGERWKALPRSSF*ITDGRT
Trigger: AGTTCGACCATCAGTTATTCAAAAACTGGAACGGGG...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGAGAAGCAGTAGAAGCTaGACTTACTTCAGAATGAGA +
Preference number: 4 (lower is better)
Translates to: VRWWYGSCLLNSILSVQARSSRS*TYFRMR
Trigger: TCTCATTCTGAAGTAAGTTCAGCTTCTACTGCTTCT...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGAGAGCTAGTTCAAGTTaGTCCATTGCAGAACGAAAA +
Preference number: 4 (lower is better)
Translates to: VRWWYGSCLLNSILSVQARASSS*SIAERK
Trigger: TTTTCGTTCTGCAATGGATCAACTTGAACTAGCTCT...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGGGAACTGTCACAAACTaGACAGGATCGTCAGAATCA +
Preference number: 4 (lower is better)
Translates to: ITVRCYGTRRHGERWKALGTVTN*TGSSES
Trigger: TGATTCTGACGATCCTGTTCAGTTTGTGACAGTTCC...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGTCAGTTATCCCAGCTTaGGCCTTTTTCTTCTTCTGG +
Preference number: 4 (lower is better)
Translates to: ITVRCYGTRRHGERWKALSVIPA*AFFFFW
Trigger: CCAGAAGAAGAAAAAGGCTCAAGCTGGGATAACTGA...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGCTTCAGGACAAGGATTaGTGCTGTTTTCTTTCAAAC +
Preference number: 4 (lower is better)
Translates to: VRWWYGSCLLNSILSVQALQDKD*CCFLSN
Trigger: GTTTGAAAGAAAACAGCAGCAATCCTTGTCCTGAAG...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGGAAATAACCTTGACATaGCTGTGTGTTTGTCTTCAC +
Preference number: 4 (lower is better)
Translates to: VRWWYGSCLLNSILSVQAEITLT*LCVCLH
Trigger: GTGAAGACAAACACACAGGCATGTCAAGGTTATTTC...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGCTCTTTCAAAGCAGCTaGTTGAGGTTTTTCAGTCAT +
Preference number: 4 (lower is better)
Translates to: VRWWYGSCLLNSILSVQALFQSS*LRFFSH
Trigger: ATGACTGAAAAACCTCAACCAGCTGCTTTGAAAGAG...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGTCAGAACATGTATCTTaGCTGTTATCTTCCAAGGAC +
Preference number: 4 (lower is better)
Translates to: VRWWYGSCLLNSILSVQASEHVS*LLSSKD
Trigger: GTCCTTGGAAGATAACAGCCAAGATACATGTTCTGA...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGCACAGCCTCTACAGATaGAACTGTCACAAACTGAAC +
Preference number: 4 (lower is better)
Translates to: ITVRCYGTRRHGERWKALHSLYR*NCHKLN
Trigger: GTTCAGTTTGTGACAGTTCCATCTGTAGAGGCTGTG...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCTACTTCAGAACAACATaGCTGAAAGTTCTCATTTTC +
Preference number: 4 (lower is better)
Translates to: LGLVISQRASDGGMDPASYFRTT*LKVLIF
Trigger: GAAAATGAGAACTTTCAGCCATGTTGTTCTGAAGTA...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGCCAAAAGAATTTTCTTaGTCTCAGAGCCACCATCAT +
Preference number: 4 (lower is better)
Translates to: VRWWYGSCLLNSILSVQAPKEFS*SQSHHH
Trigger: ATGATGGTGGCTCTGAGACCAAGAAAATTCTTTTGG...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGACAACTGTATATATGTaGCAAATCACTGTCACTGCC +
Preference number: 4 (lower is better)
Translates to: VRWWYGSCLLNSILSVQATTVYM*QITVTA
Trigger: GGCAGTGACAGTGATTTGCCACATATATACAGTTGT...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCGAAATGAAGATTGATTaGTCCTCTGGAACTTTAACA +
Preference number: 4 (lower is better)
Translates to: LGLVISQRASDGGMDPASEMKID*SSGTLT
Trigger: TGTTAAAGTTCCAGAGGACCAATCAATCTTCATTTC...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGTTATTCCTCCAGCATTaGAAAGATGAGCAGGCAGCT +
Preference number: 4 (lower is better)
Translates to: ITVRCYGTRRHGERWKALLFLQH*KDEQAA
Trigger: AGCTGCCTGCTCATCTTTCCAATGCTGGAGGAATAA...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTGGGTTGCTAGGGCCCTaGTCTGGGGAGTCAAAGTAT +
Preference number: 4 (lower is better)
Translates to: KSLTNKCSKSVILGSEALGLLGP*SGESKY
Trigger: ATACTTTGACTCCCCAGATCAGGGCCCTAGCAACCC...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGAGCATGTGTTTCTTCTaGTACATTTATTTCTCTGGC +
Preference number: 4 (lower is better)
Translates to: VRWWYGSCLLNSILSVQASMCFF*YIYFSG
Trigger: GCCAGAGAAATAAATGTATCAGAAGAAACACATGCT...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGTTGAAATTGAGTTCATaGCCACAAGATGGACAAGTA +
Preference number: 4 (lower is better)
Translates to: VRWWYGSCLLNSILSVQALKLSS*PQDGQV
Trigger: TACTTGTCCATCTTGTGGTCATGAACTCAATTTCAA...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTCCAGCATTGGAAAGATaGGCAGGCAGCTCTGCAGGT +
Preference number: 4 (lower is better)
Translates to: KSLTNKCSKSVILGSEALPALER*AGSSAG
Trigger: ACCTGCAGAGCTGCCTGCTCATCTTTCCAATGCTGG...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGCAGGACAAGGATTGCTaGTGTTTTCTTTCAAACTGG +
Preference number: 4 (lower is better)
Translates to: ITVRCYGTRRHGERWKALQDKDC*CFLSNW
Trigger: CCAGTTTGAAAGAAAACAGCAGCAATCCTTGTCCTG...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGAACAGCAGAATTACATaGTACTTCAGAACAACATGG +
Preference number: 4 (lower is better)
Translates to: VRWWYGSCLLNSILSVQANSRIT*YFRTTW
Trigger: CCATGTTGTTCTGAAGTAGCATGTAATTCTGCTGTT...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGTTTCTTGTCAAGGTCTaGTTCTTTGCAAGCCACTTG +
Preference number: 4 (lower is better)
Translates to: ITVRCYGTRRHGERWKALFLVKV*FFASHL
Trigger: CAAGTGGCTTGCAAAGAAGCAGACCTTGACAAGAAA...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGGCACACAAGTTACACTaGCCTTGTCTTCTATGTCAA +
Preference number: 4 (lower is better)
Translates to: ITVRCYGTRRHGERWKALAHKLH*PCLLCQ
Trigger: TTGACATAGAAGACAAGGGCAGTGTAACTTGTGTGC...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGAGCAGGCAGCTCTaGAGGTCCTGCAGTAGTGCT +
Preference number: 4 (lower is better)
Translates to: KSLTNKCSKSVILGSEALMSRQL*RSCSSA
Trigger: AGCACTACTGCAGGACCTGCAGAGCTGCCTGCTCAT...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGAAACGTGTTTCTTCTTaGGGACGAACTGTATTTGAA +
Preference number: 4 (lower is better)
Translates to: VRWWYGSCLLNSILSVQAKRVSS*GRTVFE
Trigger: TTCAAATACAGTTCGTCCCCAAGAAGAAACACGTTT...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTCGACAGCTCTGCCTCTaGGGCTTCCTTCTTGAACAG +
Preference number: 4 (lower is better)
Translates to: KSLTNKCSKSVILGSEALRQLCL*GFLLEQ
Trigger: CTGTTCAAGAAGGAAGCCCCAGAGGCAGAGCTGTCG...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGATCAAACTTGAAAGTTaGTTGAGAGCCACCATATTC +
Preference number: 4 (lower is better)
Translates to: VRWWYGSCLLNSILSVQAIKLES*LRATIF
Trigger: GAATATGGTGGCTCTCAACCAACTTTCAAGTTTGAT...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGTCTTCCAAGGACACTTaGTCATTATTACCAAGACTT +
Preference number: 4 (lower is better)
Translates to: VRWWYGSCLLNSILSVQASSKDT*SLLPRL
Trigger: AAGTCTTGGTAATAATGACCAAGTGTCCTTGGAAGA...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGTGTCGGTATTTGTTGTaGAACTCAAGCTTCTCAGGT +
Preference number: 4 (lower is better)
Translates to: ITVRCYGTRRHGERWKALCRYLL*NSSFSG
Trigger: ACCTGAGAAGCTTGAGTTCCACAACAAATACCGACA...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGATTCATCATCACTGTTaGCTTCCTCAAGATGCTTTG +
Preference number: 4 (lower is better)
Translates to: ITVRCYGTRRHGERWKALIHHHC*LPQDAL
Trigger: CAAAGCATCTTGAGGAAGTCAACAGTGATGATGAAT...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGGAAAAACATCAAACTTaGAAGTTGGTTGAGAGCCAC +
Preference number: 4 (lower is better)
Translates to: ITVRCYGTRRHGERWKALEKHQT*KLVESH
Trigger: GTGGCTCTCAACCAACTTTCAAGTTTGATGTTTTTC...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGAGAGCTAGTTCAAGTTaGTCCATTGCAGAACGAAAA +
Preference number: 4 (lower is better)
Translates to: ITVRCYGTRRHGERWKALRASSS*SIAERK
Trigger: TTTTCGTTCTGCAATGGATCAACTTGAACTAGCTCT...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTTCTTTGCAAGCCACTTaGGGTGGGTCAGCTTCTGAC +
Preference number: 4 (lower is better)
Translates to: KSLTNKCSKSVILGSEALSLQAT*GGSASD
Trigger: GTCAGAAGCTGACCCACCTCAAGTGGCTTGCAAAGA...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGATTGATGTGGTGTTCTaGTTAAGGTCAGACCTAATG +
Preference number: 4 (lower is better)
Translates to: ITVRCYGTRRHGERWKALIDVVF*LRSDLM
Trigger: CATTAGGTCTGACCTTAATCAGAACACCACATCAAT...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGCTTTGTCTTTCTCTTTaGCTTTTTACCTACATAAGG +
Preference number: 4 (lower is better)
Translates to: VRWWYGSCLLNSILSVQALCLSL*LFTYIR
Trigger: CCTTATGTAGGTAAAAAGGCAAAGAGAAAGACAAAG...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGTTCTTCTTCCTCAGTTaGATTCTTATAAGAACAGTC +
Preference number: 4 (lower is better)
Translates to: VRWWYGSCLLNSILSVQAFFFLS*ILIRTV
Trigger: GACTGTTCTTATAAGAATGCAACTGAGGAAGAAGAA...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGATACATTTATTTCTCTaGCGGTCAGTTCAGATAGGG +
Preference number: 4 (lower is better)
Translates to: ITVRCYGTRRHGERWKALIHLFL*RSVQIG
Trigger: CCCTATCTGAACTGACCGCCAGAGAAATAAATGTAT...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTCCCGGAATCCTCACATaGTTCAGAGCTACCACTTCC +
Preference number: 4 (lower is better)
Translates to: KSLTNKCSKSVILGSEALPGILT*FRATTS
Trigger: GGAAGTGGTAGCTCTGAACCATGTGAGGATTCCGGG...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTACAGGCACCTGGGGATaGTCCAGAGCTGCATCACTG +
Preference number: 4 (lower is better)
Translates to: KCSKSVILGSEALMSLFSTGTWG*SRAASL
Trigger: CAGTGATGCAGCTCTGGACCATCCCCAGGTGCCTGT...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGGTACATTGGGTTTGGTaGATATTCATACTTAGTTAC +
Preference number: 4 (lower is better)
Translates to: VRWWYGSCLLNSILSVQAVHWVW*IFILSY
Trigger: GTAACTAAGTATGAATATCCACCAAACCCAATGTAC...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGTTCTTCTGGCTATCATaGTGGAAACACTTCCTCTTT +
Preference number: 4 (lower is better)
Translates to: ITVRCYGTRRHGERWKALFFWLS*WKHFLF
Trigger: AAAGAGGAAGTGTTTCCACCATGATAGCCAGAAGAA...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGGTCATATTCTCTCACTaGAAGAAGTCTCTTCCTTCT +
Preference number: 4 (lower is better)
Translates to: ITVRCYGTRRHGERWKALVIFSH*KKSLPS
Trigger: AGAAGGAAGAGACTTCTTCCAGTGAGAGAATATGAC...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR CAA 72 bp CTCTGTGGCACAACTGGATTAAAACCCAGCAATTTGTaGGTTCTTGTTCTCAGTTACCTGCAAGCACTCCAC +
Preference number: 4 (lower is better)
Translates to: LCGTTGLKPSNL*VLVLSYLQALH
Trigger: GTGGAGTGCTTGCAGGTAACTGAGAACAAGAACCAACAAATTGCTGGGTTTTAATCCAGTTGTGCCACAGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR CAA 72 bp TGGCTCTGTGGCACAACTGGATTAAAACCCAGCAATTaGTTGGTTCTTGTTCTCAGTTACCTGCAAGCACTC +
Preference number: 4 (lower is better)
Translates to: WLCGTTGLKPSN*LVLVLSYLQAL
Trigger: GAGTGCTTGCAGGTAACTGAGAACAAGAACCAACAAATTGCTGGGTTTTAATCCAGTTGTGCCACAGAGCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTGACGAGACCCACAACTaGACCTCTCTTCAGAACTCA +
Preference number: 4 (lower is better)
Translates to: KSLTNKCSKSVILGSEALDETHN*TSLQNS
Trigger: TGAGTTCTGAAGAGAGGTTCAGTTGTGGGTCTCGTC...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTAGGATTCTGCTGTCTTaGTGCTGCTGGAGTCTCATC +
Preference number: 4 (lower is better)
Translates to: KSLTNKCSKSVILGSEALRILLS*CCWSLI
Trigger: GATGAGACTCCAGCAGCATCAAGACAGCAGAATCCT...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTAAGGTGGCCTGCTACTaGCTGACAGGGATCATTAGA +
Preference number: 4 (lower is better)
Translates to: KSLTNKCSKSVILGSEALKVACY*LTGIIR
Trigger: TCTAATGATCCCTGTCAGTCAGTAGCAGGCCACCTT...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGTGGTTAACTACTATCTaGAAAGAGACGTCAGAATCA +
Preference number: 4 (lower is better)
Translates to: ITVRCYGTRRHGERWKALWLTTI*KETSES
Trigger: TGATTCTGACGTCTCTTTTCAGATAGTAGTTAACCA...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGTTGAAATTGAGTTCATaGCCACAAGATGGACAAGTA +
Preference number: 4 (lower is better)
Translates to: ITVRCYGTRRHGERWKALLKLSS*PQDGQV
Trigger: TACTTGTCCATCTTGTGGTCATGAACTCAATTTCAA...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTCTCATCAACCAGGTTTaGATGGGTGTTCCTCACAGG +
Preference number: 4 (lower is better)
Translates to: KSLTNKCSKSVILGSEALLINQV*MGVPHR
Trigger: CCTGTGAGGAACACCCATGCAAACCTGGTTGATGAG...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCGCAGTAGTGCTCAACTaGTCTTCAGCACCAGCTGGG +
Preference number: 4 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSAVVLN*SSAPAG
Trigger: CCCAGCTGGTGCTGAAGAGCAGTTGAGCACTACTGC...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGGCAGTAGTGCTCAACTaGTCTTCAGCACCAGCTGGG +
Preference number: 4 (lower is better)
Translates to: LYEVNREDDSKGIETRRWAVVLN*SSAPAG
Trigger: CCCAGCTGGTGCTGAAGAGCAGTTGAGCACTACTGC...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGATGAGCAGGCAGCTCTaGAGGTCCTGCAGTAGTGCT +
Preference number: 4 (lower is better)
Translates to: LYEVNREDDSKGIETRRWMSRQL*RSCSSA
Trigger: AGCACTACTGCAGGACCTGCAGAGCTGCCTGCTCAT...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGGACGTCTGCTCTGTCTaGTCAGGCTTCTGTGCTGAG +
Preference number: 4 (lower is better)
Translates to: LYEVNREDDSKGIETRRWDVCSV*SGFCAE
Trigger: CTCAGCACAGAAGCCTGACCAGACAGAGCAGACGTC...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTCGACAGCTCTGCCTCTaGGGCTTCCTTCTTGAACAG +
Preference number: 4 (lower is better)
Translates to: KCSKSVILGSEALMSLFSRQLCL*GFLLEQ
Trigger: CTGTTCAAGAAGGAAGCCCCAGAGGCAGAGCTGTCG...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCCGACAGCTCTGCCTCTaGGGCTTCCTTCTTGAACAG +
Preference number: 4 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSRQLCL*GFLLEQ
Trigger: CTGTTCAAGAAGGAAGCCCCAGAGGCAGAGCTGTCG...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTGTGCTTCAGCACTACTaGGCTGCTCTTCATTTCCCT +
Preference number: 4 (lower is better)
Translates to: KSLTNKCSKSVILGSEALVLQHY*AALHFP
Trigger: AGGGAAATGAAGAGCAGCCCAGTAGTGCTGAAGCAC...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGAGTAATTTTATCTTTTaGGTCAGCATGGCCCTCTTT +
Preference number: 4 (lower is better)
Translates to: ITVRCYGTRRHGERWKALSNFIF*VSMALF
Trigger: AAAGAGGGCCATGCTGACCCAAAAGATAAAATTACT...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGAGGCTTTGTTTTAGGTaGATTCAAAGACTGATCTTC +
Preference number: 4 (lower is better)
Translates to: ITVRCYGTRRHGERWKALRLCFR*IQRLIF
Trigger: GAAGATCAGTCTTTGAATCCACCTAAAACAAAGCCT...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR CAA 72 bp CAGGAACACTCTAAAAGGCAACTCTGCTGTCCAGTCTaGGATCTGAGGAGGAATCAGATAATAAGAACCATG +
Preference number: 4 (lower is better)
Translates to: QEHSKRQLCCPV*DLRRNQIIRTM
Trigger: CATGGTTCTTATTATCTGATTCCTCCTCAGATCCAAGACTGGACAGCAGAGTTGCCTTTTAGAGTGTTCCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTGTCAGGCTTCTGTGCTaGGAACTAAACAAGTGCTGT +
Preference number: 4 (lower is better)
Translates to: KSLTNKCSKSVILGSEALVRLLC*ELNKCC
Trigger: ACAGCACTTGTTTAGTTCTCAGCACAGAAGCCTGAC...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp ACAACCTATGTATCTTTGGTTAAACAATTTTCTCGCCAGCATCAACATTTGCATGGGTTGCTAGGGCCCTaGTCTGGGGAGTCAAAGTAT +
Preference number: 4 (lower is better)
Translates to: TTYVSLVKQFSRQHQHLHGLLGP*SGESKY
Trigger: ATACTTTGACTCCCCAGATCAGGGCCCTAGCAACCC...ATGCAAATGTTGATGCTGGCGAGAAAATTGTTTAACCAAAGATACATAGGTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTCTCTTCAGAACTCACTaGGCGCTTCTGTTTCAGAAG +
Preference number: 4 (lower is better)
Translates to: KSLTNKCSKSVILGSEALLFRTH*ALLFQK
Trigger: CTTCTGAAACAGAAGCGCTCAGTGAGTTCTGAAGAG...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTCAATGGTCAATGTCCTaGACTACTTCAATGTGGCCG +
Preference number: 4 (lower is better)
Translates to: KSLTNKCSKSVILGSEALQWSMS*TTSMWP
Trigger: CGGCCACATTGAAGTAGTTCAGGACATTGACCATTG...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCAGGTGGGTCAGCTTCTaGCTGCAGATGAACAGCAGA +
Preference number: 4 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSRWVSF*LQMNSR
Trigger: TCTGCTGTTCATCTGCAGTCAGAAGCTGACCCACCT...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTTCGGTCGCTTTCAGCTaGATCCAAATAGCCAGCTTT +
Preference number: 4 (lower is better)
Translates to: KSLTNKCSKSVILGSEALSVAFS*IQIASF
Trigger: AAAGCTGGCTATTTGGATTCAGCTGAAAGCGACCGA...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTTTCCTCACAGGATTCTaGTGTCTTGATGCTGCTGGA +
Preference number: 4 (lower is better)
Translates to: KSLTNKCSKSVILGSEALFLTGF*CLDAAG
Trigger: TCCAGCAGCATCAAGACAGCAGAATCCTGTGAGGAA...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGCTTTGTCTTTCTCTTTaGCTTTTTACCTACATAAGG +
Preference number: 4 (lower is better)
Translates to: ITVRCYGTRRHGERWKALLCLSL*LFTYIR
Trigger: CCTTATGTAGGTAAAAAGGCAAAGAGAAAGACAAAG...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGTTCTTCTTCCTCAGTTaGATTCTTATAAGAACAGTC +
Preference number: 4 (lower is better)
Translates to: ITVRCYGTRRHGERWKALFFFLS*ILIRTV
Trigger: GACTGTTCTTATAAGAATGCAACTGAGGAAGAAGAA...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTCCCGGAATCCTCACATaGTTCAGAGCTACCACTTCC +
Preference number: 4 (lower is better)
Translates to: KCSKSVILGSEALMSLFSPGILT*FRATTS
Trigger: GGAAGTGGTAGCTCTGAACCATGTGAGGATTCCGGG...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGGAAATGAAGATTGATTaGTCCTCTGGAACTTTAACA +
Preference number: 4 (lower is better)
Translates to: ITVRCYGTRRHGERWKALEMKID*SSGTLT
Trigger: TGTTAAAGTTCCAGAGGACCAATCAATCTTCATTTC...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCGACGAGACCCACAACTaGACCTCTCTTCAGAACTCA +
Preference number: 4 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSDETHN*TSLQNS
Trigger: TGAGTTCTGAAGAGAGGTTCAGTTGTGGGTCTCGTC...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTAGGATTCTGCTGTCTTaGTGCTGCTGGAGTCTCATC +
Preference number: 4 (lower is better)
Translates to: KCSKSVILGSEALMSLFSRILLS*CCWSLI
Trigger: GATGAGACTCCAGCAGCATCAAGACAGCAGAATCCT...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTTGTTTAGGCAGGGAGTaGAAATGGCCAGTAGAATCA +
Preference number: 4 (lower is better)
Translates to: KSLTNKCSKSVILGSEALCLGRE*KWPVES
Trigger: TGATTCTACTGGCCATTTTCACTCCCTGCCTAAACA...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTAAGGTGGCCTGCTACTaGCTGACAGGGATCATTAGA +
Preference number: 4 (lower is better)
Translates to: KCSKSVILGSEALMSLFSKVACY*LTGIIR
Trigger: TCTAATGATCCCTGTCAGTCAGTAGCAGGCCACCTT...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCTCCTTGTCAGGTTTTTaGAGGTGGCCTGCTACTGAC +
Preference number: 4 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSSLSGF*RWPATD
Trigger: GTCAGTAGCAGGCCACCTTCAAAAACCTGACAAGGA...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp ACAACCTATGTATCTTTGGTTAAACAATTTTCTCGCCAGCATCAACATTTGCATAGGTGGGTCAGCTTCTaGCTGCAGATGAACAGCAGA +
Preference number: 4 (lower is better)
Translates to: TTYVSLVKQFSRQHQHLHRWVSF*LQMNSR
Trigger: TCTGCTGTTCATCTGCAGTCAGAAGCTGACCCACCT...ATGCAAATGTTGATGCTGGCGAGAAAATTGTTTAACCAAAGATACATAGGTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTTATCACTGGTTTCTTTaGCAGTCATCTGAGGTGGCT +
Preference number: 4 (lower is better)
Translates to: KSLTNKCSKSVILGSEALYHWFL*QSSEVA
Trigger: AGCCACCTCAGATGACTGTCAAAGAAACCAGTGATA...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTGGATTGGTTTGTCACTaGCTGAGAGGCTTCATAATC +
Preference number: 4 (lower is better)
Translates to: KSLTNKCSKSVILGSEALGLVCH*LRGFII
Trigger: GATTATGAAGCCTCTCAGTCAGTGACAAACCAATCC...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTTCAGTTATCCCAGCTTaGGCCTTTTTCTTCTTCTGG +
Preference number: 4 (lower is better)
Translates to: KSLTNKCSKSVILGSEALSVIPA*AFFFFW
Trigger: CCAGAAGAAGAAAAAGGCTCAAGCTGGGATAACTGA...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp ACAACCTATGTATCTTTGGTTAAACAATTTTCTCGCCAGCATCAACATTTGCATTCAGCACTACTGGGCTaGTCTTCATTTCCCTGTCCG +
Preference number: 4 (lower is better)
Translates to: TTYVSLVKQFSRQHQHLHSALLG*SSFPCP
Trigger: CGGACAGGGAAATGAAGAGCAGCCCAGTAGTGCTGA...ATGCAAATGTTGATGCTGGCGAGAAAATTGTTTAACCAAAGATACATAGGTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCCAAGGTCTGCTTCTTTaGAAGCCACTTGAGGTGGGT +
Preference number: 4 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSQGLLL*KPLEVG
Trigger: ACCCACCTCAAGTGGCTTGCAAAGAAGCAGACCTTG...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGGCTAGGGCCCTGATCTaGGGAGTCAAAGTATGTTTC +
Preference number: 4 (lower is better)
Translates to: LYEVNREDDSKGIETRRWARALI*GVKVCF
Trigger: GAAACATACTTTGACTCCCCAGATCAGGGCCCTAGC...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGGTGCTTCAGCACTACTaGGCTGCTCTTCATTTCCCT +
Preference number: 4 (lower is better)
Translates to: LYEVNREDDSKGIETRRWVLQHY*AALHFP
Trigger: AGGGAAATGAAGAGCAGCCCAGTAGTGCTGAAGCAC...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATAAGGTTCTGTCACTaGGTGAGAAGCAGTAGAAGC +
Preference number: 4 (lower is better)
Translates to: KSLTNKCSKSVILGSEALIRFCH*VRSSRS
Trigger: GCTTCTACTGCTTCTCACCCAGTGACAGAACCTTAT...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTTTATTCCTCCAGCATTaGAAAGATGAGCAGGCAGCT +
Preference number: 4 (lower is better)
Translates to: KSLTNKCSKSVILGSEALLFLQH*KDEQAA
Trigger: AGCTGCCTGCTCATCTTTCCAATGCTGGAGGAATAA...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp ACAACCTATGTATCTTTGGTTAAACAATTTTCTCGCCAGCATCAACATTTGCATAGGATTCTGCTGTCTTaGTGCTGCTGGAGTCTCATC +
Preference number: 4 (lower is better)
Translates to: TTYVSLVKQFSRQHQHLHRILLS*CCWSLI
Trigger: GATGAGACTCCAGCAGCATCAAGACAGCAGAATCCT...ATGCAAATGTTGATGCTGGCGAGAAAATTGTTTAACCAAAGATACATAGGTTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTTTCAAAGCAGCTGGTTaGGGTTTTTCAGTCATTGTC +
Preference number: 4 (lower is better)
Translates to: KSLTNKCSKSVILGSEALFKAAG*GFSVIV
Trigger: GACAATGACTGAAAAACCTCAACCAGCTGCTTTGAA...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCAGGCTGGCTAAGGACTaGATCAAGACAATCAGCAGT +
Preference number: 4 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSRLAKD*IKTISS
Trigger: ACTGCTGATTGTCTTGATTCAGTCCTTAGCCAGCCT...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTCCACTCGTTCATTTTTaGAACCACATCGAACTCTTG +
Preference number: 4 (lower is better)
Translates to: KSLTNKCSKSVILGSEALPLVHF*NHIELL
Trigger: CAAGAGTTCGATGTGGTTTCAAAAATGAACGAGTGG...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGCAATGGTCAATGTCCTaGACTACTTCAATGTGGCCG +
Preference number: 4 (lower is better)
Translates to: LYEVNREDDSKGIETRRWQWSMS*TTSMWP
Trigger: CGGCCACATTGAAGTAGTTCAGGACATTGACCATTG...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp ACAACCTATGTATCTTTGGTTAAACAATTTTCTCGCCAGCATCAACATTTGCATTCCTTGTCAGGTTTTTaGAGGTGGCCTGCTACTGAC +
Preference number: 4 (lower is better)
Translates to: TTYVSLVKQFSRQHQHLHSLSGF*RWPATD
Trigger: GTCAGTAGCAGGCCACCTTCAAAAACCTGACAAGGA...ATGCAAATGTTGATGCTGGCGAGAAAATTGTTTAACCAAAGATACATAGGTTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTTCGGTCGCTTTCAGCTaGATCCAAATAGCCAGCTTT +
Preference number: 4 (lower is better)
Translates to: KCSKSVILGSEALMSLFSSVAFS*IQIASF
Trigger: AAAGCTGGCTATTTGGATTCAGCTGAAAGCGACCGA...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGTCGAACTGCAACTTCTaGGTGTTCCTGAGAAGTACC +
Preference number: 4 (lower is better)
Translates to: LYEVNREDDSKGIETRRWSNCNF*VFLRST
Trigger: GGTACTTCTCAGGAACACGCAGAAGTTGCAGTTCGA...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGAATTCCAAGGACTGCTaGTGTCCCCGTTCCAGTTTT +
Preference number: 4 (lower is better)
Translates to: LYEVNREDDSKGIETRRWNSKDC*CPRSSF
Trigger: AAAACTGGAACGGGGACAGCAGCAGTCCTTGGAATT...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp ACAACCTATGTATCTTTGGTTAAACAATTTTCTCGCCAGCATCAACATTTGCATCTCATCAACCAGGTTTaGATGGGTGTTCCTCACAGG +
Preference number: 4 (lower is better)
Translates to: TTYVSLVKQFSRQHQHLHLINQV*MGVPHR
Trigger: CCTGTGAGGAACACCCATGCAAACCTGGTTGATGAG...ATGCAAATGTTGATGCTGGCGAGAAAATTGTTTAACCAAAGATACATAGGTTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTCAGGACAAGGATTGCTaGTGTTTTCTTTCAAACTGG +
Preference number: 4 (lower is better)
Translates to: KSLTNKCSKSVILGSEALQDKDC*CFLSNW
Trigger: CCAGTTTGAAAGAAAACAGCAGCAATCCTTGTCCTG...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTTTTCTTGTCAAGGTCTaGTTCTTTGCAAGCCACTTG +
Preference number: 4 (lower is better)
Translates to: KSLTNKCSKSVILGSEALFLVKV*FFASHL
Trigger: CAAGTGGCTTGCAAAGAAGCAGACCTTGACAAGAAA...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTGCACACAAGTTACACTaGCCTTGTCTTCTATGTCAA +
Preference number: 4 (lower is better)
Translates to: KSLTNKCSKSVILGSEALAHKLH*PCLLCQ
Trigger: TTGACATAGAAGACAAGGGCAGTGTAACTTGTGTGC...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCGCACACGGCAATAGCTaGAATACCCTTGCCTTTTCT +
Preference number: 4 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSAHGNS*NTLAFS
Trigger: AGAAAAGGCAAGGGTATTGCAGCTATTGCCGTGTGC...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTGTCTTGGTAATTATATaGGTGGTGTCGCAGAACATC +
Preference number: 4 (lower is better)
Translates to: KSLTNKCSKSVILGSEALVLVII*VVSQNI
Trigger: GATGTTCTGCGACACCACCCATATAATTACCAAGAC...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp ACAACCTATGTATCTTTGGTTAAACAATTTTCTCGCCAGCATCAACATTTGCATGCTAGGGCCCTGATCTaGGGAGTCAAAGTATGTTTC +
Preference number: 4 (lower is better)
Translates to: TTYVSLVKQFSRQHQHLHARALI*GVKVCF
Trigger: GAAACATACTTTGACTCCCCAGATCAGGGCCCTAGC...ATGCAAATGTTGATGCTGGCGAGAAAATTGTTTAACCAAAGATACATAGGTTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCTCTTTTGGGTCAGCATaGCCCTCTTTCAAAGCAGCT +
Preference number: 4 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSSFGSA*PSFKAA
Trigger: AGCTGCTTTGAAAGAGGGCCATGCTGACCCAAAAGA...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTTATCGTCTCCTGCATTaGGCTTTGGGTCATGCCTAT +
Preference number: 4 (lower is better)
Translates to: KCSKSVILGSEALMSLFSYRLLH*ALGHAY
Trigger: ATAGGCATGACCCAAAGCCCAATGCAGGAGACGATA...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTCTGGAAATTATCCTTTaGAACTTGAGTAGCACCCAC +
Preference number: 4 (lower is better)
Translates to: KSLTNKCSKSVILGSEALLEIIL*NLSSTH
Trigger: GTGGGTGCTACTCAAGTTCCAAAGGATAATTTCCAG...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp ACAACCTATGTATCTTTGGTTAAACAATTTTCTCGCCAGCATCAACATTTGCATGTCAGGCTTCTGTGCTaGGAACTAAACAAGTGCTGT +
Preference number: 4 (lower is better)
Translates to: TTYVSLVKQFSRQHQHLHVRLLC*ELNKCC
Trigger: ACAGCACTTGTTTAGTTCTCAGCACAGAAGCCTGAC...ATGCAAATGTTGATGCTGGCGAGAAAATTGTTTAACCAAAGATACATAGGTTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTCAGTTTTTGAATAACTaGTGGTCGAACTGCAACTTC +
Preference number: 4 (lower is better)
Translates to: KSLTNKCSKSVILGSEALQFLNN*WSNCNF
Trigger: GAAGTTGCAGTTCGACCATCAGTTATTCAAAAACTG...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGTCTTTAGTTTTGGGTTaGGATGATGGGTTGCTAGGG +
Preference number: 4 (lower is better)
Translates to: LYEVNREDDSKGIETRRWSLVLG*DDGLLG
Trigger: CCCTAGCAACCCATCATCTCAACCCAAAACTAAAGA...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCAGAGCTGAAACTACTTaGCCCGTAGTTCTCATCAAC +
Preference number: 4 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSRAETT*PVVLIN
Trigger: GTTGATGAGAACTACGGGTCAAGTAGTTTCAGCTCT...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTAGAGCTGAAACTACTTaGCCCGTAGTTCTCATCAAC +
Preference number: 4 (lower is better)
Translates to: KCSKSVILGSEALMSLFSRAETT*PVVLIN
Trigger: GTTGATGAGAACTACGGGTCAAGTAGTTTCAGCTCT...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTAGGGTGATCATTTCCTaGATGAAGAGGAATATCAGA +
Preference number: 4 (lower is better)
Translates to: KSLTNKCSKSVILGSEALRVIIS*MKRNIR
Trigger: TCTGATATTCCTCTTCATTCAGGAAATGATCACCCT...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTAGAAGCAGTAGAAGCTaGACTTACTTCAGAATGAGA +
Preference number: 4 (lower is better)
Translates to: KSLTNKCSKSVILGSEALRSSRS*TYFRMR
Trigger: TCTCATTCTGAAGTAAGTTCAGCTTCTACTGCTTCT...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCTGTTTAGGCAGGGAGTaGAAATGGCCAGTAGAATCA +
Preference number: 4 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSCLGRE*KWPVES
Trigger: TGATTCTACTGGCCATTTTCACTCCCTGCCTAAACA...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGTGTTTAGGCAGGGAGTaGAAATGGCCAGTAGAATCA +
Preference number: 4 (lower is better)
Translates to: LYEVNREDDSKGIETRRWCLGRE*KWPVES
Trigger: TGATTCTACTGGCCATTTTCACTCCCTGCCTAAACA...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGGTAATTCCAAAACCCTaGGCATCATCCCTCTTACCT +
Preference number: 4 (lower is better)
Translates to: LYEVNREDDSKGIETRRWVIPKP*ASSLLP
Trigger: AGGTAAGAGGGATGATGCTCAGGGTTTTGGAATTAC...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTGCTTCTGACTGCAGATaGACAGCAGAATTACATGCT +
Preference number: 4 (lower is better)
Translates to: KCSKSVILGSEALMSLFSASDCR*TAELHA
Trigger: AGCATGTAATTCTGCTGTTCATCTGCAGTCAGAAGC...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGGCTTCTGACTGCAGATaGACAGCAGAATTACATGCT +
Preference number: 4 (lower is better)
Translates to: LYEVNREDDSKGIETRRWASDCR*TAELHA
Trigger: AGCATGTAATTCTGCTGTTCATCTGCAGTCAGAAGC...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTGTCTGTTTCTCCATCTaGTGTCTGAACCTGGTTAAC +
Preference number: 4 (lower is better)
Translates to: KCSKSVILGSEALMSLFSVCFSI*CLNLVN
Trigger: GTTAACCAGGTTCAGACATCAGATGGAGAAACAGAC...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGGTCTGTTTCTCCATCTaGTGTCTGAACCTGGTTAAC +
Preference number: 4 (lower is better)
Translates to: LYEVNREDDSKGIETRRWVCFSI*CLNLVN
Trigger: GTTAACCAGGTTCAGACATCAGATGGAGAAACAGAC...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTCTGAAGAGGGATATTTaGATCAGAAATTACTTCCCG +
Preference number: 4 (lower is better)
Translates to: KSLTNKCSKSVILGSEALLKRDI*IRNYFP
Trigger: CGGGAAGTAATTTCTGATTCAAATATCCCTCTTCAG...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGTATCACTGGTTTCTTTaGCAGTCATCTGAGGTGGCT +
Preference number: 4 (lower is better)
Translates to: LYEVNREDDSKGIETRRWYHWFL*QSSEVA
Trigger: AGCCACCTCAGATGACTGTCAAAGAAACCAGTGATA...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTGGTGGATTCAAAGACTaGTCTTCCTTCATACTTAGA +
Preference number: 4 (lower is better)
Translates to: KSLTNKCSKSVILGSEALGGFKD*SSFILR
Trigger: TCTAAGTATGAAGGAAGATCAGTCTTTGAATCCACC...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp ACAACCTATGTATCTTTGGTTAAACAATTTTCTCGCCAGCATCAACATTTGCATAATTCCAAGGACTGCTaGTGTCCCCGTTCCAGTTTT +
Preference number: 4 (lower is better)
Translates to: TTYVSLVKQFSRQHQHLHNSKDC*CPRSSF
Trigger: AAAACTGGAACGGGGACAGCAGCAGTCCTTGGAATT...ATGCAAATGTTGATGCTGGCGAGAAAATTGTTTAACCAAAGATACATAGGTTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTCTTAAGATCATCTTCTaGAACCTCTTCTCCTTCCCC +
Preference number: 4 (lower is better)
Translates to: KCSKSVILGSEALMSLFSLKIIF*NLFSFP
Trigger: GGGGAAGGAGAAGAGGTTGCAGAAGATGATCTTAAG...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCCTTAAGATCATCTTCTaGAACCTCTTCTCCTTCCCC +
Preference number: 4 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSLKIIF*NLFSFP
Trigger: GGGGAAGGAGAAGAGGTTGCAGAAGATGATCTTAAG...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGATAAGGTTCTGTCACTaGGTGAGAAGCAGTAGAAGC +
Preference number: 4 (lower is better)
Translates to: LYEVNREDDSKGIETRRWIRFCH*VRSSRS
Trigger: GCTTCTACTGCTTCTCACCCAGTGACAGAACCTTAT...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTCTTTCCGAAGACTGGTaGCTTCTCCAGTTTTCTGTA +
Preference number: 4 (lower is better)
Translates to: KCSKSVILGSEALMSLFSLSEDW*LLQFSV
Trigger: TACAGAAAACTGGAGAAGCCACCAGTCTTCGGAAAG...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCGATCTTTCCGAAGACTaGTGGCTTCTCCAGTTTTCT +
Preference number: 4 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSDLSED*WLLQFS
Trigger: AGAAAACTGGAGAAGCCACCAGTCTTCGGAAAGATC...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTCCAAAAGAATTTTCTTaGTCTCAGAGCCACCATCAT +
Preference number: 4 (lower is better)
Translates to: KSLTNKCSKSVILGSEALPKEFS*SQSHHH
Trigger: ATGATGGTGGCTCTGAGACCAAGAAAATTCTTTTGG...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTTTCTTCTGGCTATCATaGTGGAAACACTTCCTCTTT +
Preference number: 4 (lower is better)
Translates to: KSLTNKCSKSVILGSEALFFWLS*WKHFLF
Trigger: AAAGAGGAAGTGTTTCCACCATGATAGCCAGAAGAA...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp ACAACCTATGTATCTTTGGTTAAACAATTTTCTCGCCAGCATCAACATTTGCATTATCGTCTCCTGCATTaGGCTTTGGGTCATGCCTAT +
Preference number: 4 (lower is better)
Translates to: TTYVSLVKQFSRQHQHLHYRLLH*ALGHAY
Trigger: ATAGGCATGACCCAAAGCCCAATGCAGGAGACGATA...ATGCAAATGTTGATGCTGGCGAGAAAATTGTTTAACCAAAGATACATAGGTTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTCCAGGTTTTGTCTTTTaGCACTATCGTCTCCTGCAT +
Preference number: 4 (lower is better)
Translates to: KCSKSVILGSEALMSLFSPGFVF*HYRLLH
Trigger: ATGCAGGAGACGATAGTGCCAAAAGACAAAACCTGG...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCCCAGGTTTTGTCTTTTaGCACTATCGTCTCCTGCAT +
Preference number: 4 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSPGFVF*HYRLLH
Trigger: ATGCAGGAGACGATAGTGCCAAAAGACAAAACCTGG...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGCCAGGTTTTGTCTTTTaGCACTATCGTCTCCTGCAT +
Preference number: 4 (lower is better)
Translates to: LYEVNREDDSKGIETRRWPGFVF*HYRLLH
Trigger: ATGCAGGAGACGATAGTGCCAAAAGACAAAACCTGG...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp ACAACCTATGTATCTTTGGTTAAACAATTTTCTCGCCAGCATCAACATTTGCATCCCCGTTCCAGTTTTTaGATAACTGATGGTCGAACT +
Preference number: 4 (lower is better)
Translates to: TTYVSLVKQFSRQHQHLHPRSSF*ITDGRT
Trigger: AGTTCGACCATCAGTTATTCAAAAACTGGAACGGGG...ATGCAAATGTTGATGCTGGCGAGAAAATTGTTTAACCAAAGATACATAGGTTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp ACAACCTATGTATCTTTGGTTAAACAATTTTCTCGCCAGCATCAACATTTGCATTCTTTAGTTTTGGGTTaGGATGATGGGTTGCTAGGG +
Preference number: 4 (lower is better)
Translates to: TTYVSLVKQFSRQHQHLHSLVLG*DDGLLG
Trigger: CCCTAGCAACCCATCATCTCAACCCAAAACTAAAGA...ATGCAAATGTTGATGCTGGCGAGAAAATTGTTTAACCAAAGATACATAGGTTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTGAAGACAGACATTTTTaGCAACTACTTCACATTTGC +
Preference number: 4 (lower is better)
Translates to: KSLTNKCSKSVILGSEALEDRHF*QLLHIC
Trigger: GCAAATGTGAAGTAGTTGTCAAAAATGTCTGTCTTC...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGTTCAAAGCAGCTGGTTaGGGTTTTTCAGTCATTGTC +
Preference number: 4 (lower is better)
Translates to: LYEVNREDDSKGIETRRWFKAAG*GFSVIV
Trigger: GACAATGACTGAAAAACCTCAACCAGCTGCTTTGAA...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGCCACTCGTTCATTTTTaGAACCACATCGAACTCTTG +
Preference number: 4 (lower is better)
Translates to: LYEVNREDDSKGIETRRWPLVHF*NHIELL
Trigger: CAAGAGTTCGATGTGGTTTCAAAAATGAACGAGTGG...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGAACTACTGCCTGGACTaGGAAACCAGAATCCAAATT +
Preference number: 4 (lower is better)
Translates to: LYEVNREDDSKGIETRRWNYCLD*ETRIQI
Trigger: AATTTGGATTCTGGTTTCTCAGTCCAGGCAGTAGTT...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp ACAACCTATGTATCTTTGGTTAAACAATTTTCTCGCCAGCATCAACATTTGCATGTAATTCCAAAACCCTaGGCATCATCCCTCTTACCT +
Preference number: 4 (lower is better)
Translates to: TTYVSLVKQFSRQHQHLHVIPKP*ASSLLP
Trigger: AGGTAAGAGGGATGATGCTCAGGGTTTTGGAATTAC...ATGCAAATGTTGATGCTGGCGAGAAAATTGTTTAACCAAAGATACATAGGTTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp ACAACCTATGTATCTTTGGTTAAACAATTTTCTCGCCAGCATCAACATTTGCATGGAACTGTCACAAACTaGACAGGATCGTCAGAATCA +
Preference number: 4 (lower is better)
Translates to: TTYVSLVKQFSRQHQHLHGTVTN*TGSSES
Trigger: TGATTCTGACGATCCTGTTCAGTTTGTGACAGTTCC...ATGCAAATGTTGATGCTGGCGAGAAAATTGTTTAACCAAAGATACATAGGTTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp ACAACCTATGTATCTTTGGTTAAACAATTTTCTCGCCAGCATCAACATTTGCATGGATTGGTTTGTCACTaGCTGAGAGGCTTCATAATC +
Preference number: 4 (lower is better)
Translates to: TTYVSLVKQFSRQHQHLHGLVCH*LRGFII
Trigger: GATTATGAAGCCTCTCAGTCAGTGACAAACCAATCC...ATGCAAATGTTGATGCTGGCGAGAAAATTGTTTAACCAAAGATACATAGGTTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGTTCCCAGAACTTGCTTaGATTCCACATCTCACTTCT +
Preference number: 4 (lower is better)
Translates to: LYEVNREDDSKGIETRRWFPELA*IPHLTS
Trigger: AGAAGTGAGATGTGGAATTCAAGCAAGTTCTGGGAA...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCTTCCCAGAACTTGCTTaGATTCCACATCTCACTTCT +
Preference number: 4 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSFPELA*IPHLTS
Trigger: AGAAGTGAGATGTGGAATTCAAGCAAGTTCTGGGAA...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTCGATTTACAAGAGTCTaGTGGAAATTATCCTTTGGA +
Preference number: 4 (lower is better)
Translates to: KSLTNKCSKSVILGSEALRFTRV*WKLSFG
Trigger: TCCAAAGGATAATTTCCAGCAGACTCTTGTAAATCG...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTGTCTTGGTAATTATATaGGTGGTGTCGCAGAACATC +
Preference number: 4 (lower is better)
Translates to: KCSKSVILGSEALMSLFSVLVII*VVSQNI
Trigger: GATGTTCTGCGACACCACCCATATAATTACCAAGAC...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp ACAACCTATGTATCTTTGGTTAAACAATTTTCTCGCCAGCATCAACATTTGCATCTTTCCGAAGACTGGTaGCTTCTCCAGTTTTCTGTA +
Preference number: 4 (lower is better)
Translates to: TTYVSLVKQFSRQHQHLHLSEDW*LLQFSV
Trigger: TACAGAAAACTGGAGAAGCCACCAGTCTTCGGAAAG...ATGCAAATGTTGATGCTGGCGAGAAAATTGTTTAACCAAAGATACATAGGTTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp ACAACCTATGTATCTTTGGTTAAACAATTTTCTCGCCAGCATCAACATTTGCATGATCTTTCCGAAGACTaGTGGCTTCTCCAGTTTTCT +
Preference number: 4 (lower is better)
Translates to: TTYVSLVKQFSRQHQHLHDLSED*WLLQFS
Trigger: AGAAAACTGGAGAAGCCACCAGTCTTCGGAAAGATC...ATGCAAATGTTGATGCTGGCGAGAAAATTGTTTAACCAAAGATACATAGGTTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCTTCTGGCTATCATGGTaGAAACACTTCCTCTTTGGT +
Preference number: 4 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSFWLSW*KHFLFG
Trigger: ACCAAAGAGGAAGTGTTTCCACCATGATAGCCAGAA...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTGCCTTTTTCTTCTTCTaGCTATCATGGTGGAAACAC +
Preference number: 4 (lower is better)
Translates to: KCSKSVILGSEALMSLFSAFFFF*LSWWKH
Trigger: GTGTTTCCACCATGATAGCCAGAAGAAGAAAAAGGC...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCCTGGAAATTATCCTTTaGAACTTGAGTAGCACCCAC +
Preference number: 4 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSLEIIL*NLSSTH
Trigger: GTGGGTGCTACTCAAGTTCCAAAGGATAATTTCCAG...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp ACAACCTATGTATCTTTGGTTAAACAATTTTCTCGCCAGCATCAACATTTGCATTTATTCCTCCAGCATTaGAAAGATGAGCAGGCAGCT +
Preference number: 4 (lower is better)
Translates to: TTYVSLVKQFSRQHQHLHLFLQH*KDEQAA
Trigger: AGCTGCCTGCTCATCTTTCCAATGCTGGAGGAATAA...ATGCAAATGTTGATGCTGGCGAGAAAATTGTTTAACCAAAGATACATAGGTTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGTGTCGGTATTTGTTGTaGAACTCAAGCTTCTCAGGT +
Preference number: 4 (lower is better)
Translates to: LYEVNREDDSKGIETRRWCRYLL*NSSFSG
Trigger: ACCTGAGAAGCTTGAGTTCCACAACAAATACCGACA...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTCAGTTTTTGAATAACTaGTGGTCGAACTGCAACTTC +
Preference number: 4 (lower is better)
Translates to: KCSKSVILGSEALMSLFSQFLNN*WSNCNF
Trigger: GAAGTTGCAGTTCGACCATCAGTTATTCAAAAACTG...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCAGGGTGATCATTTCCTaGATGAAGAGGAATATCAGA +
Preference number: 4 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSRVIIS*MKRNIR
Trigger: TCTGATATTCCTCTTCATTCAGGAAATGATCACCCT...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCAGAAGCAGTAGAAGCTaGACTTACTTCAGAATGAGA +
Preference number: 4 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSRSSRS*TYFRMR
Trigger: TCTCATTCTGAAGTAAGTTCAGCTTCTACTGCTTCT...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGATTCATCATCACTGTTaGCTTCCTCAAGATGCTTTG +
Preference number: 4 (lower is better)
Translates to: LYEVNREDDSKGIETRRWIHHHC*LPQDAL
Trigger: CAAAGCATCTTGAGGAAGTCAACAGTGATGATGAAT...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCGAAAAACATCAAACTTaGAAGTTGGTTGAGAGCCAC +
Preference number: 4 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSEKHQT*KLVESH
Trigger: GTGGCTCTCAACCAACTTTCAAGTTTGATGTTTTTC...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGTCATCTGTATCCTTCTaGCTTCTGTTTTCACCACTT +
Preference number: 4 (lower is better)
Translates to: LYEVNREDDSKGIETRRWSSVSF*LLFSPL
Trigger: AAGTGGTGAAAACAGAAGTCAGAAGGATACAGATGA...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTTCATCTGTATCCTTCTaGCTTCTGTTTTCACCACTT +
Preference number: 4 (lower is better)
Translates to: KCSKSVILGSEALMSLFSSSVSF*LLFSPL
Trigger: AAGTGGTGAAAACAGAAGTCAGAAGGATACAGATGA...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTCTGAAGAGGGATATTTaGATCAGAAATTACTTCCCG +
Preference number: 4 (lower is better)
Translates to: KCSKSVILGSEALMSLFSLKRDI*IRNYFP
Trigger: CGGGAAGTAATTTCTGATTCAAATATCCCTCTTCAG...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGCTGAAGAGGGATATTTaGATCAGAAATTACTTCCCG +
Preference number: 4 (lower is better)
Translates to: LYEVNREDDSKGIETRRWLKRDI*IRNYFP
Trigger: CGGGAAGTAATTTCTGATTCAAATATCCCTCTTCAG...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGATTGATGTGGTGTTCTaGTTAAGGTCAGACCTAATG +
Preference number: 4 (lower is better)
Translates to: LYEVNREDDSKGIETRRWIDVVF*LRSDLM
Trigger: CATTAGGTCTGACCTTAATCAGAACACCACATCAAT...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGGAAATAACCTTGACATaGCTGTGTGTTTGTCTTCAC +
Preference number: 4 (lower is better)
Translates to: LYEVNREDDSKGIETRRWEITLT*LCVCLH
Trigger: GTGAAGACAAACACACAGGCATGTCAAGGTTATTTC...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCCTGTTTCAGAAGTGTTaGCTTGTTAAGAACCAAACG +
Preference number: 4 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSLFQKC*LVKNQT
Trigger: CGTTTGGTTCTTAACAAGCCAACACTTCTGAAACAG...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTCTGTTTCAGAAGTGTTaGCTTGTTAAGAACCAAACG +
Preference number: 4 (lower is better)
Translates to: KCSKSVILGSEALMSLFSLFQKC*LVKNQT
Trigger: CGTTTGGTTCTTAACAAGCCAACACTTCTGAAACAG...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCATACATTTATTTCTCTaGCGGTCAGTTCAGATAGGG +
Preference number: 4 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSIHLFL*RSVQIG
Trigger: CCCTATCTGAACTGACCGCCAGAGAAATAAATGTAT...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGAGGCTGGTATTCTTCTaGTTCGGAAGGTTTATTTCT +
Preference number: 4 (lower is better)
Translates to: LYEVNREDDSKGIETRRWRLVFF*FGRFIS
Trigger: AGAAATAAACCTTCCGAACCAGAAGAATACCAGCCT...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCAGGCTGGTATTCTTCTaGTTCGGAAGGTTTATTTCT +
Preference number: 4 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSRLVFF*FGRFIS
Trigger: AGAAATAAACCTTCCGAACCAGAAGAATACCAGCCT...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTTCAGAACATGTATCTTaGCTGTTATCTTCCAAGGAC +
Preference number: 4 (lower is better)
Translates to: KCSKSVILGSEALMSLFSSEHVS*LLSSKD
Trigger: GTCCTTGGAAGATAACAGCCAAGATACATGTTCTGA...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTCCAAAAGAATTTTCTTaGTCTCAGAGCCACCATCAT +
Preference number: 4 (lower is better)
Translates to: KCSKSVILGSEALMSLFSPKEFS*SQSHHH
Trigger: ATGATGGTGGCTCTGAGACCAAGAAAATTCTTTTGG...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp ACAACCTATGTATCTTTGGTTAAACAATTTTCTCGCCAGCATCAACATTTGCATTTCTGGCTATCATGGTaGAAACACTTCCTCTTTGGT +
Preference number: 4 (lower is better)
Translates to: TTYVSLVKQFSRQHQHLHFWLSW*KHFLFG
Trigger: ACCAAAGAGGAAGTGTTTCCACCATGATAGCCAGAA...ATGCAAATGTTGATGCTGGCGAGAAAATTGTTTAACCAAAGATACATAGGTTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCACAACTGTATATATGTaGCAAATCACTGTCACTGCC +
Preference number: 4 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSTTVYM*QITVTA
Trigger: GGCAGTGACAGTGATTTGCCACATATATACAGTTGT...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTACAACTGTATATATGTaGCAAATCACTGTCACTGCC +
Preference number: 4 (lower is better)
Translates to: KCSKSVILGSEALMSLFSTTVYM*QITVTA
Trigger: GGCAGTGACAGTGATTTGCCACATATATACAGTTGT...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTGAAATGAAGATTGATTaGTCCTCTGGAACTTTAACA +
Preference number: 4 (lower is better)
Translates to: KSLTNKCSKSVILGSEALEMKID*SSGTLT
Trigger: TGTTAAAGTTCCAGAGGACCAATCAATCTTCATTTC...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
3UTR CAA 72 bp AGCTTGCTATGTTCATTCTCCCAGTGTTATAACTTTTaGGCACGAAAGATTTTCAGAGGACATGATTTAAGG +
Preference number: 4 (lower is better)
Translates to: SLLCSFSQCYNF*ARKIFRGHDLR
Trigger: CCTTAAATCATGTCCTCTGAAAATCTTTCGTGCCAAAAAGTTATAACACTGGGAGAATGAACATAGCAAGCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCAGCATGTGTTTCTTCTaGTACATTTATTTCTCTGGC +
Preference number: 4 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSSMCFF*YIYFSG
Trigger: GCCAGAGAAATAAATGTATCAGAAGAAACACATGCT...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp ACAACCTATGTATCTTTGGTTAAACAATTTTCTCGCCAGCATCAACATTTGCATAGGGTGATCATTTCCTaGATGAAGAGGAATATCAGA +
Preference number: 4 (lower is better)
Translates to: TTYVSLVKQFSRQHQHLHRVIIS*MKRNIR
Trigger: TCTGATATTCCTCTTCATTCAGGAAATGATCACCCT...ATGCAAATGTTGATGCTGGCGAGAAAATTGTTTAACCAAAGATACATAGGTTGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCGAAGACAGACATTTTTaGCAACTACTTCACATTTGC +
Preference number: 4 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSEDRHF*QLLHIC
Trigger: GCAAATGTGAAGTAGTTGTCAAAAATGTCTGTCTTC...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp ACAACCTATGTATCTTTGGTTAAACAATTTTCTCGCCAGCATCAACATTTGCATATTCATCATCACTGTTaGCTTCCTCAAGATGCTTTG +
Preference number: 4 (lower is better)
Translates to: TTYVSLVKQFSRQHQHLHIHHHC*LPQDAL
Trigger: CAAAGCATCTTGAGGAAGTCAACAGTGATGATGAAT...ATGCAAATGTTGATGCTGGCGAGAAAATTGTTTAACCAAAGATACATAGGTTGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp ACAACCTATGTATCTTTGGTTAAACAATTTTCTCGCCAGCATCAACATTTGCATGAAAAACATCAAACTTaGAAGTTGGTTGAGAGCCAC +
Preference number: 4 (lower is better)
Translates to: TTYVSLVKQFSRQHQHLHEKHQT*KLVESH
Trigger: GTGGCTCTCAACCAACTTTCAAGTTTGATGTTTTTC...ATGCAAATGTTGATGCTGGCGAGAAAATTGTTTAACCAAAGATACATAGGTTGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp ACAACCTATGTATCTTTGGTTAAACAATTTTCTCGCCAGCATCAACATTTGCATAGAGCTAGTTCAAGTTaGTCCATTGCAGAACGAAAA +
Preference number: 4 (lower is better)
Translates to: TTYVSLVKQFSRQHQHLHRASSS*SIAERK
Trigger: TTTTCGTTCTGCAATGGATCAACTTGAACTAGCTCT...ATGCAAATGTTGATGCTGGCGAGAAAATTGTTTAACCAAAGATACATAGGTTGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCTGGTTAACTACTATCTaGAAAGAGACGTCAGAATCA +
Preference number: 4 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSWLTTI*KETSES
Trigger: TGATTCTGACGTCTCTTTTCAGATAGTAGTTAACCA...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCAACAGCAGAATTACATaGTACTTCAGAACAACATGG +
Preference number: 4 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSNSRIT*YFRTTW
Trigger: CCATGTTGTTCTGAAGTAGCATGTAATTCTGCTGTT...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTAACAGCAGAATTACATaGTACTTCAGAACAACATGG +
Preference number: 4 (lower is better)
Translates to: KCSKSVILGSEALMSLFSNSRIT*YFRTTW
Trigger: CCATGTTGTTCTGAAGTAGCATGTAATTCTGCTGTT...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGCGATTTACAAGAGTCTaGTGGAAATTATCCTTTGGA +
Preference number: 4 (lower is better)
Translates to: LYEVNREDDSKGIETRRWRFTRV*WKLSFG
Trigger: TCCAAAGGATAATTTCCAGCAGACTCTTGTAAATCG...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCAAACGTGTTTCTTCTTaGGGACGAACTGTATTTGAA +
Preference number: 4 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSKRVSS*GRTVFE
Trigger: TTCAAATACAGTTCGTCCCCAAGAAGAAACACGTTT...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTAAACGTGTTTCTTCTTaGGGACGAACTGTATTTGAA +
Preference number: 4 (lower is better)
Translates to: KCSKSVILGSEALMSLFSKRVSS*GRTVFE
Trigger: TTCAAATACAGTTCGTCCCCAAGAAGAAACACGTTT...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTATCAAACTTGAAAGTTaGTTGAGAGCCACCATATTC +
Preference number: 4 (lower is better)
Translates to: KCSKSVILGSEALMSLFSIKLES*LRATIF
Trigger: GAATATGGTGGCTCTCAACCAACTTTCAAGTTTGAT...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCATCAAACTTGAAAGTTaGTTGAGAGCCACCATATTC +
Preference number: 4 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSIKLES*LRATIF
Trigger: GAATATGGTGGCTCTCAACCAACTTTCAAGTTTGAT...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp ACAACCTATGTATCTTTGGTTAAACAATTTTCTCGCCAGCATCAACATTTGCATCTCTTTCAAAGCAGCTaGTTGAGGTTTTTCAGTCAT +
Preference number: 4 (lower is better)
Translates to: TTYVSLVKQFSRQHQHLHLFQSS*LRFFSH
Trigger: ATGACTGAAAAACCTCAACCAGCTGCTTTGAAAGAG...ATGCAAATGTTGATGCTGGCGAGAAAATTGTTTAACCAAAGATACATAGGTTGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCAGTAATTTTATCTTTTaGGTCAGCATGGCCCTCTTT +
Preference number: 4 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSSNFIF*VSMALF
Trigger: AAAGAGGGCCATGCTGACCCAAAAGATAAAATTACT...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCTCTTCCAAGGACACTTaGTCATTATTACCAAGACTT +
Preference number: 4 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSSSKDT*SLLPRL
Trigger: AAGTCTTGGTAATAATGACCAAGTGTCCTTGGAAGA...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTTCTTCCAAGGACACTTaGTCATTATTACCAAGACTT +
Preference number: 4 (lower is better)
Translates to: KCSKSVILGSEALMSLFSSSKDT*SLLPRL
Trigger: AAGTCTTGGTAATAATGACCAAGTGTCCTTGGAAGA...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp ACAACCTATGTATCTTTGGTTAAACAATTTTCTCGCCAGCATCAACATTTGCATTCAGAACATGTATCTTaGCTGTTATCTTCCAAGGAC +
Preference number: 4 (lower is better)
Translates to: TTYVSLVKQFSRQHQHLHSEHVS*LLSSKD
Trigger: GTCCTTGGAAGATAACAGCCAAGATACATGTTCTGA...ATGCAAATGTTGATGCTGGCGAGAAAATTGTTTAACCAAAGATACATAGGTTGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCAGGCTTTGTTTTAGGTaGATTCAAAGACTGATCTTC +
Preference number: 4 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSRLCFR*IQRLIF
Trigger: GAAGATCAGTCTTTGAATCCACCTAAAACAAAGCCT...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGAGGCTTTGTTTTAGGTaGATTCAAAGACTGATCTTC +
Preference number: 4 (lower is better)
Translates to: LYEVNREDDSKGIETRRWRLCFR*IQRLIF
Trigger: GAAGATCAGTCTTTGAATCCACCTAAAACAAAGCCT...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp ACAACCTATGTATCTTTGGTTAAACAATTTTCTCGCCAGCATCAACATTTGCATGTCATATTCTCTCACTaGAAGAAGTCTCTTCCTTCT +
Preference number: 4 (lower is better)
Translates to: TTYVSLVKQFSRQHQHLHVIFSH*KKSLPS
Trigger: AGAAGGAAGAGACTTCTTCCAGTGAGAGAATATGAC...ATGCAAATGTTGATGCTGGCGAGAAAATTGTTTAACCAAAGATACATAGGTTGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR TCA 90 bp ACAACCTATGTATCTTTGGTTAAACAATTTTCTCGCCAGCATCAACATTTGCATAGCATGTGTTTCTTCTaGTACATTTATTTCTCTGGC +
Preference number: 4 (lower is better)
Translates to: TTYVSLVKQFSRQHQHLHSMCFF*YIYFSG
Trigger: GCCAGAGAAATAAATGTATCAGAAGAAACACATGCT...ATGCAAATGTTGATGCTGGCGAGAAAATTGTTTAACCAAAGATACATAGGTTGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR GCA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCTTCTTCTTCCTCAGTTaGATTCTTATAAGAACAGTC +
Preference number: 4 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSFFFLS*ILIRTV
Trigger: GACTGTTCTTATAAGAATGCAACTGAGGAAGAAGAA...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCTACTTCAGAACAACATaGCTGAAAGTTCTCATTTTC +
Preference number: 4 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSYFRTT*LKVLIF
Trigger: GAAAATGAGAACTTTCAGCCATGTTGTTCTGAAGTA...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGGTACATTGGGTTTGGTaGATATTCATACTTAGTTAC +
Preference number: 4 (lower is better)
Translates to: LYEVNREDDSKGIETRRWVHWVW*IFILSY
Trigger: GTAACTAAGTATGAATATCCACCAAACCCAATGTAC...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CCA 90 bp ACAACCTATGTATCTTTGGTTAAACAATTTTCTCGCCAGCATCAACATTTGCATTACTTCAGAACAACATaGCTGAAAGTTCTCATTTTC +
Preference number: 4 (lower is better)
Translates to: TTYVSLVKQFSRQHQHLHYFRTT*LKVLIF
Trigger: GAAAATGAGAACTTTCAGCCATGTTGTTCTGAAGTA...ATGCAAATGTTGATGCTGGCGAGAAAATTGTTTAACCAAAGATACATAGGTTGT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS GCA 90 bp CTTCAGCACTACTGGGCTGCTCTTCATTTCCCTGTCCGACAGCTCTaGCTCTGGGGCTTCCTTCTTGAACAGGCACCTGGGGATGGTCCA +
Preference number: 5 (lower is better)
Translates to: LQHYWAALHFPVRQL*LWGFLLEQAPGDGP
Trigger: TGGACCATCCCCAGGTGCCTGTTCAAGAAGGAAGCCCCAGAGGCAGAGCTGTCGGACAGGGAAATGAAGAGCAGCCCAGTAGTGCTGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCTCTGGGGCTTCCTTCTaGAACAGGCACCTGGGGATG +
Preference number: 5 (lower is better)
Translates to: LGLVISQRASDGGMDPASSGASF*NRHLGM
Trigger: CATCCCCAGGTGCCTGTTCAAGAAGGAAGCCCCAGA...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCAGTCACCTGCCCATGTaGCTGATGAAGCCCCTCTGC +
Preference number: 5 (lower is better)
Translates to: LGLVISQRASDGGMDPASSHLPM*LMKPLC
Trigger: GCAGAGGGGCTTCATCAGCAACATGGGCAGGTGACT...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS GCA 90 bp TATTCCTCCAGCATTGGAAAGATGAGCAGGCAGCTCTGCAGGTCCTaGAGTAGTGCTCAACTGCTCTTCAGCACCAGCTGGGAGAACCGG +
Preference number: 5 (lower is better)
Translates to: YSSSIGKMSRQLCRS*SSAQLLFSTSWENR
Trigger: CCGGTTCTCCCAGCTGGTGCTGAAGAGCAGTTGAGCACTACTGCAGGACCTGCAGAGCTGCCTGCTCATCTTTCCAATGCTGGAGGAATA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGGAGGGGCGCGAGAGCTaGAGCGCTAGTGCTTCAGCT +
Preference number: 5 (lower is better)
Translates to: ITVRCYGTRRHGERWKALEGRES*SASASA
Trigger: AGCTGAAGCACTAGCGCTCAAGCTCTCGCGCCCCTC...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS GCA 90 bp TCAAGAGAACCATCACGTTCAGGATGTGCTTCAGCACTACTGGGCTaGTCTTCATTTCCCTGTCCGACAGCTCTGCCTCTGGGGCTTCCT +
Preference number: 5 (lower is better)
Translates to: SREPSRSGCASALLG*SSFPCPTALPLGLP
Trigger: AGGAAGCCCCAGAGGCAGAGCTGTCGGACAGGGAAATGAAGAGCAGCCCAGTAGTGCTGAAGCACATCCTGAACGTGATGGTTCTCTTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCCAGGATTCTGCTGTCTaGATGCTGCTGGAGTCTCAT +
Preference number: 5 (lower is better)
Translates to: LGLVISQRASDGGMDPASQDSAV*MLLESH
Trigger: ATGAGACTCCAGCAGCATCAAGACAGCAGAATCCTG...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS TCA 90 bp CAGCAGCTTGGGAAGGACCAGGTACTGCCTGACGAGACCCACAACTaGACCTCTCTTCAGAACTCACTGAGCGCTTCTGTTTCAGAAGTG +
Preference number: 5 (lower is better)
Translates to: QQLGKDQVLPDETHN*TSLQNSLSASVSEV
Trigger: CACTTCTGAAACAGAAGCGCTCAGTGAGTTCTGAAGAGAGGTTCAGTTGTGGGTCTCGTCAGGCAGTACCTGGTCCTTCCCAAGCTGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS TCA 90 bp AGACTTAAGTCACGTACAGCAGCTTGGGAAGGACCAGGTACTGCCTaGCGAGACCCACAACTGAACCTCTCTTCAGAACTCACTGAGCGC +
Preference number: 5 (lower is better)
Translates to: RLKSRTAAWEGPGTA*RDPQLNLSSELTER
Trigger: GCGCTCAGTGAGTTCTGAAGAGAGGTTCAGTTGTGGGTCTCGTCAGGCAGTACCTGGTCCTTCCCAAGCTGCTGTACGTGACTTAAGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS TCA 90 bp GAACAGGCACCTGGGGATGGTCCAGAGCTGCATCACTGTCAGAGCTaGAACTACTTGACCCGTAGTTCTCATCAACCAGGTTTGCATGGG +
Preference number: 5 (lower is better)
Translates to: EQAPGDGPELHHCQS*NYLTRSSHQPGLHG
Trigger: CCCATGCAAACCTGGTTGATGAGAACTACGGGTCAAGTAGTTTCAGCTCTGACAGTGATGCAGCTCTGGACCATCCCCAGGTGCCTGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS GCA 90 bp GAGTTCATGAGCCACTGTCTCAAGAGAACCATCACGTTCAGGATGTaGTTCAGCACTACTGGGCTGCTCTTCATTTCCCTGTCCGACAGC +
Preference number: 5 (lower is better)
Translates to: EFMSHCLKRTITFRM*FSTTGLLFISLSDS
Trigger: GCTGTCGGACAGGGAAATGAAGAGCAGCCCAGTAGTGCTGAAGCACATCCTGAACGTGATGGTTCTCTTGAGACAGTGGCTCATGAACTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCTACCATTATCTGAAGTaGCTCCAGAAACAGTGGGTG +
Preference number: 5 (lower is better)
Translates to: LGLVISQRASDGGMDPASYHYLK*LQKQWV
Trigger: CACCCACTGTTTCTGGAGCAACTTCAGATAATGGTA...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGCAGGATTCTGCTGTCTaGATGCTGCTGGAGTCTCAT +
Preference number: 5 (lower is better)
Translates to: VRWWYGSCLLNSILSVQAQDSAV*MLLESH
Trigger: ATGAGACTCCAGCAGCATCAAGACAGCAGAATCCTG...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCCTCAGTTATCCCAGCTaGAGCCTTTTTCTTCTTCTG +
Preference number: 5 (lower is better)
Translates to: LGLVISQRASDGGMDPASLSYPS*SLFLLL
Trigger: CAGAAGAAGAAAAAGGCTCAAGCTGGGATAACTGAG...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCCTCAGAACATGTATCTaGGCTGTTATCTTCCAAGGA +
Preference number: 5 (lower is better)
Translates to: LGLVISQRASDGGMDPASLRTCI*AVIFQG
Trigger: TCCTTGGAAGATAACAGCCAAGATACATGTTCTGAG...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCATTATCCTTTGGAACTaGAGTAGCACCCACATCTTC +
Preference number: 5 (lower is better)
Translates to: LGLVISQRASDGGMDPASIILWN*SSTHIF
Trigger: GAAGATGTGGGTGCTACTCAAGTTCCAAAGGATAAT...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCTTCAGAAGTGTTGGCTaGTTAAGAACCAAACGTGTT +
Preference number: 5 (lower is better)
Translates to: LGLVISQRASDGGMDPASFRSVG*LRTKRV
Trigger: AACACGTTTGGTTCTTAACAAGCCAACACTTCTGAA...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGTACCATTATCTGAAGTaGCTCCAGAAACAGTGGGTG +
Preference number: 5 (lower is better)
Translates to: VRWWYGSCLLNSILSVQAYHYLK*LQKQWV
Trigger: CACCCACTGTTTCTGGAGCAACTTCAGATAATGGTA...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGGAACTGGAGCAGCCATaGCTCTTAACTTCCATGTCG +
Preference number: 5 (lower is better)
Translates to: ITVRCYGTRRHGERWKALELEQP*LLTSMS
Trigger: CGACATGGAAGTTAAGAGCAATGGCTGCTCCAGTTC...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCTCCACTCGTTCATTTTaGAAACCACATCGAACTCTT +
Preference number: 5 (lower is better)
Translates to: LGLVISQRASDGGMDPASSTRSF*KPHRTL
Trigger: AAGAGTTCGATGTGGTTTCAAAAATGAACGAGTGGA...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCATCTTCCAAGGACACTaGGTCATTATTACCAAGACT +
Preference number: 5 (lower is better)
Translates to: LGLVISQRASDGGMDPASIFQGH*VIITKT
Trigger: AGTCTTGGTAATAATGACCAAGTGTCCTTGGAAGAT...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCGTTATTTCTACCTTCTaGTTCAACATGTTCAGGCTC +
Preference number: 5 (lower is better)
Translates to: LGLVISQRASDGGMDPASVISTF*FNMFRL
Trigger: GAGCCTGAACATGTTGAACAAGAAGGTAGAAATAAC...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCGCTGAAGAGGGATATTaGAATCAGAAATTACTTCCC +
Preference number: 5 (lower is better)
Translates to: LGLVISQRASDGGMDPASAEEGY*NQKLLP
Trigger: GGGAAGTAATTTCTGATTCAAATATCCCTCTTCAGC...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGGACATGCCTGTGTGTTaGTCTTCACATCATCTTCTC +
Preference number: 5 (lower is better)
Translates to: VRWWYGSCLLNSILSVQADMPVC*SSHHLL
Trigger: GAGAAGATGATGTGAAGACAAACACACAGGCATGTC...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS TCA 90 bp CAATTCCAAGGACTGCTGCTGTCCCCGTTCCAGTTTTTGAATAACTaGTGGTCGAACTGCAACTTCTGCGTGTTCCTGAGAAGTACCAGG +
Preference number: 5 (lower is better)
Translates to: QFQGLLLSPFQFLNN*WSNCNFCVFLRSTR
Trigger: CCTGGTACTTCTCAGGAACACGCAGAAGTTGCAGTTCGACCATCAGTTATTCAAAAACTGGAACGGGGACAGCAGCAGTCCTTGGAATTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS CCA 90 bp CTTCCAATGGTCAATGTCCTGAACTACTTCAATGTGGCCGGCCAATaGCTGGGGGACATTGGAATCACATGTAATTCCAAAACCCTGAGC +
Preference number: 5 (lower is better)
Translates to: LPMVNVLNYFNVAGQ*LGDIGITCNSKTLS
Trigger: GCTCAGGGTTTTGGAATTACATGTGATTCCAATGTCCCCCAGCCATTGGCCGGCCACATTGAAGTAGTTCAGGACATTGACCATTGGAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCTATTCATCATCACTGTaGACTTCCTCAAGATGCTTT +
Preference number: 5 (lower is better)
Translates to: LGLVISQRASDGGMDPASYSSSL*TSSRCF
Trigger: AAAGCATCTTGAGGAAGTCAACAGTGATGATGAATA...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp TTGGGGTTGGTCATTTCCCAGAGGGCGTCAGATGGTGGTATGGATCCTGCCTCCGTTCAAGTTGATCCATaGCAGAACGAAAAGAAACAT +
Preference number: 5 (lower is better)
Translates to: LGLVISQRASDGGMDPASVQVDP*QNEKKH
Trigger: ATGTTTCTTTTCGTTCTGCAATGGATCAACTTGAAC...GGAGGCAGGATCCATACCACCATCTGACGCCCTCTGGGAAATGACCAACCCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS TCA 90 bp CTTGTTAAGAACCAAACGTGTTTCTTCTTGGGGACGAACTGTATTTaGACGAGATGCCTCACGACGCTTTGGAATGGCACCTTCACGTGC +
Preference number: 5 (lower is better)
Translates to: LVKNQTCFFLGTNCI*TRCLTTLWNGTFTC
Trigger: GCACGTGAAGGTGCCATTCCAAAGCGTCGTGAGGCATCTCGTTCAAATACAGTTCGTCCCCAAGAAGAAACACGTTTGGTTCTTAACAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS TCA 90 bp TACTGCCTGACGAGACCCACAACTGAACCTCTCTTCAGAACTCACTaGGCGCTTCTGTTTCAGAAGTGTTGGCTTGTTAAGAACCAAACG +
Preference number: 5 (lower is better)
Translates to: YCLTRPTTEPLFRTH*ALLFQKCWLVKNQT
Trigger: CGTTTGGTTCTTAACAAGCCAACACTTCTGAAACAGAAGCGCTCAGTGAGTTCTGAAGAGAGGTTCAGTTGTGGGTCTCGTCAGGCAGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGTTCAGAAGTGTTGGCTaGTTAAGAACCAAACGTGTT +
Preference number: 5 (lower is better)
Translates to: VRWWYGSCLLNSILSVQAFRSVG*LRTKRV
Trigger: AACACGTTTGGTTCTTAACAAGCCAACACTTCTGAA...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGGAGGTTTTTCAGTCATaGTCCGAGGAAAAACATCAA +
Preference number: 5 (lower is better)
Translates to: VRWWYGSCLLNSILSVQAEVFQS*SEEKHQ
Trigger: TTGATGTTTTTCCTCGGACAATGACTGAAAAACCTC...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGTTTCAAAGCAGCTGGTaGAGGTTTTTCAGTCATTGT +
Preference number: 5 (lower is better)
Translates to: VRWWYGSCLLNSILSVQAFQSSW*RFFSHC
Trigger: ACAATGACTGAAAAACCTCAACCAGCTGCTTTGAAA...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGATCTTCCAAGGACACTaGGTCATTATTACCAAGACT +
Preference number: 5 (lower is better)
Translates to: VRWWYGSCLLNSILSVQAIFQGH*VIITKT
Trigger: AGTCTTGGTAATAATGACCAAGTGTCCTTGGAAGAT...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGGTTATTTCTACCTTCTaGTTCAACATGTTCAGGCTC +
Preference number: 5 (lower is better)
Translates to: VRWWYGSCLLNSILSVQAVISTF*FNMFRL
Trigger: GAGCCTGAACATGTTGAACAAGAAGGTAGAAATAAC...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGAATGGCTGGGGGACATaGGAATCACATGTAATTCCA +
Preference number: 5 (lower is better)
Translates to: ITVRCYGTRRHGERWKALNGWGT*ESHVIP
Trigger: TGGAATTACATGTGATTCCAATGTCCCCCAGCCATT...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGATGTTTTTCCAACAATaGATGGAGGAGCCTGACCCT +
Preference number: 5 (lower is better)
Translates to: ITVRCYGTRRHGERWKALMFFQQ*MEEPDP
Trigger: AGGGTCAGGCTCCTCCATCAATTGTTGGAAAAACAT...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGGACATGCCTGTGTGTTaGTCTTCACATCATCTTCTC +
Preference number: 5 (lower is better)
Translates to: ITVRCYGTRRHGERWKALDMPVC*SSHHLL
Trigger: GAGAAGATGATGTGAAGACAAACACACAGGCATGTC...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGACATCTCACTTCTACTaGGTTCTGAGAAGTCACCTG +
Preference number: 5 (lower is better)
Translates to: ITVRCYGTRRHGERWKALTSHFY*VLRSHL
Trigger: CAGGTGACTTCTCAGAACCAAGTAGAAGTGAGATGT...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCGAGGGGCGCGAGAGCTaGAGCGCTAGTGCTTCAGCT +
Preference number: 5 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSEGRES*SASASA
Trigger: AGCTGAAGCACTAGCGCTCAAGCTCTCGCGCCCCTC...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGGCTTTGTCTTTCTCTTaGCCTTTTTACCTACATAAG +
Preference number: 5 (lower is better)
Translates to: VRWWYGSCLLNSILSVQAALSFS*PFYLHK
Trigger: CTTATGTAGGTAAAAAGGCAAAGAGAAAGACAAAGC...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp GTCAGATGGTGGTATGGATCCTGCCTCCTGAACTCAATCCTTTCAGTGCAGGCGTATTCATCATCACTGTaGACTTCCTCAAGATGCTTT +
Preference number: 5 (lower is better)
Translates to: VRWWYGSCLLNSILSVQAYSSSL*TSSRCF
Trigger: AAAGCATCTTGAGGAAGTCAACAGTGATGATGAATA...CGCCTGCACTGAAAGGATTGAGTTCAGGAGGCAGGATCCATACCACCATCTGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp ACAACCTATGTATCTTTGGTTAAACAATTTTCTCGCCAGCATCAACATTTGCATGAGGGGCGCGAGAGCTaGAGCGCTAGTGCTTCAGCT +
Preference number: 5 (lower is better)
Translates to: TTYVSLVKQFSRQHQHLHEGRES*SASASA
Trigger: AGCTGAAGCACTAGCGCTCAAGCTCTCGCGCCCCTC...ATGCAAATGTTGATGCTGGCGAGAAAATTGTTTAACCAAAGATACATAGGTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS TCA 90 bp ACATTTATTTCTCTGGCGGTCAGTTCAGATAGGGCACTCAGCGACTaGCAAGAGGACCCACAATCAAAACTCATGTCAGAACCTCTAGAT +
Preference number: 5 (lower is better)
Translates to: TFISLAVSSDRALSD*QEDPQSKLMSEPLD
Trigger: ATCTAGAGGTTCTGACATGAGTTTTGATTGTGGGTCCTCTTGTCAGTCGCTGAGTGCCCTATCTGAACTGACCGCCAGAGAAATAAATGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS TCA 90 bp ATCCCCAAGGCTGGTATTCTTCTGGTTCGGAAGGTTTATTTCTTGTaGTTCTCTCTGGAGTTCATGAGCCACTGTCTCAAGAGAACCATC +
Preference number: 5 (lower is better)
Translates to: IPKAGILLVRKVYFL*FSLEFMSHCLKRTI
Trigger: GATGGTTCTCTTGAGACAGTGGCTCATGAACTCCAGAGAGAATCACAAGAAATAAACCTTCCGAACCAGAAGAATACCAGCCTTGGGGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS GCA 90 bp AAGAGACGTCAGAATCATACACCACTTCAGGCACACAAGTTACACTaGCCTTGTCTTCTATGTCAAGCGCTTTCTTGTCAAGGTCTGCTT +
Preference number: 5 (lower is better)
Translates to: KRRQNHTPLQAHKLH*PCLLCQALSCQGLL
Trigger: AAGCAGACCTTGACAAGAAAGCGCTTGACATAGAAGACAAGGGCAGTGTAACTTGTGTGCCTGAAGTGGTGTATGATTCTGACGTCTCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGTCTGGGGCTTCCTTCTaGAACAGGCACCTGGGGATG +
Preference number: 5 (lower is better)
Translates to: LYEVNREDDSKGIETRRWSGASF*NRHLGM
Trigger: CATCCCCAGGTGCCTGTTCAAGAAGGAAGCCCCAGA...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGCTTCCTCAAGATGCTTaGTCTTTCTCTTTGCCTTTT +
Preference number: 5 (lower is better)
Translates to: ITVRCYGTRRHGERWKALLPQDA*SFSLPF
Trigger: AAAAGGCAAAGAGAAAGACAAAGCATCTTGAGGAAG...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGTCCACTCGTTCATTTTaGAAACCACATCGAACTCTT +
Preference number: 5 (lower is better)
Translates to: ITVRCYGTRRHGERWKALSTRSF*KPHRTL
Trigger: AAGAGTTCGATGTGGTTTCAAAAATGAACGAGTGGA...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGACTTCAGGACAAGGATaGCTGCTGTTTTCTTTCAAA +
Preference number: 5 (lower is better)
Translates to: ITVRCYGTRRHGERWKALTSGQG*LLFSFK
Trigger: TTTGAAAGAAAACAGCAGCAATCCTTGTCCTGAAGT...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGAGTCACCTGCCCATGTaGCTGATGAAGCCCCTCTGC +
Preference number: 5 (lower is better)
Translates to: LYEVNREDDSKGIETRRWSHLPM*LMKPLC
Trigger: GCAGAGGGGCTTCATCAGCAACATGGGCAGGTGACT...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGTTTTCTTCCCAGAACTaGCTTGAATTCCACATCTCA +
Preference number: 5 (lower is better)
Translates to: ITVRCYGTRRHGERWKALFSSQN*LEFHIS
Trigger: TGAGATGTGGAATTCAAGCAAGTTCTGGGAAGAAAA...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS TCA 90 bp TTCTGGTTCGGAAGGTTTATTTCTTGTGATTCTCTCTGGAGTTCATaGGCCACTGTCTCAAGAGAACCATCACGTTCAGGATGTGCTTCA +
Preference number: 5 (lower is better)
Translates to: FWFGRFISCDSLWSS*ATVSREPSRSGCAS
Trigger: TGAAGCACATCCTGAACGTGATGGTTCTCTTGAGACAGTGGCTCATGAACTCCAGAGAGAATCACAAGAAATAAACCTTCCGAACCAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS TCA 90 bp CCATCGGTGTCTTTCAGTTCAACACAGTTTTCGTTTGAGGCTAACTaGGGCTGGCTAAGGACTGAATCAAGACAATCAGCAGTATTCACA +
Preference number: 5 (lower is better)
Translates to: PSVSFSSTQFSFEAN*GWLRTESRQSAVFT
Trigger: TGTGAATACTGCTGATTGTCTTGATTCAGTCCTTAGCCAGCCTCAGTTAGCCTCAAACGAAAACTGTGTTGAACTGAAAGACACCGATGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS TCA 90 bp CTTCAGATTCATTTCCTTGTCAGGTTTTTGAAGGTGGCCTGCTACTaGCTGACAGGGATCATTAGAATCAACACTCACTTCAGGACCATC +
Preference number: 5 (lower is better)
Translates to: LQIHFLVRFLKVACY*LTGIIRINTHFRTI
Trigger: GATGGTCCTGAAGTGAGTGTTGATTCTAATGATCCCTGTCAGTCAGTAGCAGGCCACCTTCAAAAACCTGACAAGGAAATGAATCTGAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS CCA 90 bp AACCCACTTCAGGACCATGAGACTCACAGTTCATATCCCCAAGGCTaGTATTCTTCTGGTTCGGAAGGTTTATTTCTTGTGATTCTCTCT +
Preference number: 5 (lower is better)
Translates to: NPLQDHETHSSYPQG*YSSGSEGLFLVILS
Trigger: AGAGAGAATCACAAGAAATAAACCTTCCGAACCAGAAGAATACCAGCCTTGGGGATATGAACTGTGAGTCTCATGGTCCTGAAGTGGGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS CCA 90 bp GGATATTTGAATCAGAAATTACTTCCCGGTCACAGTCACTATCACTaGACACAACATCCACAAACACCACCTGTGGTGAGTCTGTTTCTC +
Preference number: 5 (lower is better)
Translates to: GYLNQKLLPGHSHYH*TQHPQTPPVVSLFL
Trigger: GAGAAACAGACTCACCACAGGTGGTGTTTGTGGATGTTGTGTCCAGTGATAGTGACTGTGACCGGGAAGTAATTTCTGATTCAAATATCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp ACAACCTATGTATCTTTGGTTAAACAATTTTCTCGCCAGCATCAACATTTGCATTCTGGGGCTTCCTTCTaGAACAGGCACCTGGGGATG +
Preference number: 5 (lower is better)
Translates to: TTYVSLVKQFSRQHQHLHSGASF*NRHLGM
Trigger: CATCCCCAGGTGCCTGTTCAAGAAGGAAGCCCCAGA...ATGCAAATGTTGATGCTGGCGAGAAAATTGTTTAACCAAAGATACATAGGTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGGTTCAAGTTGATCCATaGCAGAACGAAAAGAAACAT +
Preference number: 5 (lower is better)
Translates to: ITVRCYGTRRHGERWKALVQVDP*QNEKKH
Trigger: ATGTTTCTTTTCGTTCTGCAATGGATCAACTTGAAC...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp ATCACTGTCAGATGCTATGGCACCAGAAGACACGGAGAGAGATGGAAGGCTTTGACTATAGAAATAACCTaGACATGCCTGTGTGTTTGT +
Preference number: 5 (lower is better)
Translates to: ITVRCYGTRRHGERWKALTIEIT*TCLCVC
Trigger: ACAAACACACAGGCATGTCAAGGTTATTTCTATAGT...CAAAGCCTTCCATCTCTCTCCGTGTCTTCTGGTGCCATAGCATCTGACAGTGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTGCTTCAGCTGCTCTCTaGGCTTCCTTTATCTTCCTG +
Preference number: 5 (lower is better)
Translates to: KSLTNKCSKSVILGSEALASAAL*ASFIFL
Trigger: CAGGAAGATAAAGGAAGCCAAGAGAGCAGCTGAAGC...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS TCA 90 bp TCGTTCATTTTTGAAACCACATCGAACTCTTGTTTAGGCAGGGAGTaGAAATGGCCAGTAGAATCAGCACTTGCTTTAGAGTCACTGGGT +
Preference number: 5 (lower is better)
Translates to: SFIFETTSNSCLGRE*KWPVESALALESLG
Trigger: ACCCAGTGACTCTAAAGCAAGTGCTGATTCTACTGGCCATTTTCACTCCCTGCCTAAACAAGAGTTCGATGTGGTTTCAAAAATGAACGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS GCA 90 bp TTTTGTCTTTTGGCACTATCGTCTCCTGCATTGGGCTTTGGGTCATaGCTATTAAGATCAATGCCAACTTCTGGTACCATTAGGTTCTGT +
Preference number: 5 (lower is better)
Translates to: FCLLALSSPALGFGS*LLRSMPTSGTIRFC
Trigger: ACAGAACCTAATGGTACCAGAAGTTGGCATTGATCTTAATAGGCATGACCCAAAGCCCAATGCAGGAGACGATAGTGCCAAAAGACAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS GCA 90 bp TTCTTCTTCCTCAGTTGCATTCTTATAAGAACAGTCTTTGATAGATaGCTCCGGGGCATAAGACCATGGCATCTAGAGACATACTTCCTG +
Preference number: 5 (lower is better)
Translates to: FFFLSCILIRTVFDR*LRGIRPWHLETYFL
Trigger: CAGGAAGTATGTCTCTAGATGCCATGGTCTTATGCCCCGGAGGCATCTATCAAAGACTGTTCTTATAAGAATGCAACTGAGGAAGAAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS CCA 90 bp GGCTCCAAAACAGTTACTTCAGGTTCAGGTGGTTCAACTACTGCCTaGACTGAGAAACCAGAATCCAAATTTGTCTCAGAACATGTATCT +
Preference number: 5 (lower is better)
Translates to: GSKTVTSGSGGSTTA*TEKPESKFVSEHVS
Trigger: AGATACATGTTCTGAGACAAATTTGGATTCTGGTTTCTCAGTCCAGGCAGTAGTTGAACCACCTGAACCTGAAGTAACTGTTTTGGAGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTACCAGGTTTTGTCTTTaGGCACTATCGTCTCCTGCA +
Preference number: 5 (lower is better)
Translates to: KSLTNKCSKSVILGSEALTRFCL*ALSSPA
Trigger: TGCAGGAGACGATAGTGCCAAAAGACAAAACCTGGT...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS TCA 90 bp CAAAACAGTTACTTCAGGTTCAGGTGGTTCAACTACTGCCTGGACTaGGAAACCAGAATCCAAATTTGTCTCAGAACATGTATCTTGGCT +
Preference number: 5 (lower is better)
Translates to: QNSYFRFRWFNYCLD*ETRIQICLRTCILA
Trigger: AGCCAAGATACATGTTCTGAGACAAATTTGGATTCTGGTTTCTCAGTCCAGGCAGTAGTTGAACCACCTGAACCTGAAGTAACTGTTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS TCA 90 bp TCTAAAACTTTAGTTTGTGGTTCAGGTAGCTCAGTTATCCCAGCTTaGGCCTTTTTCTTCTTCTGGCTATCATGGTGGAAACACTTCCTC +
Preference number: 5 (lower is better)
Translates to: SKTLVCGSGSSVIPA*AFFFFWLSWWKHFL
Trigger: GAGGAAGTGTTTCCACCATGATAGCCAGAAGAAGAAAAAGGCTCAAGCTGGGATAACTGAGCTACCTGAACCACAAACTAAAGTTTTAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCATAACTCGCATCTTCTaGGTCAACTCCCTCCTCCTC +
Preference number: 5 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSITRIF*VNSLLL
Trigger: GAGGAGGAGGGAGTTGACCAAGAAGATGCGAGTTAT...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCCAGGATTCTGCTGTCTaGATGCTGCTGGAGTCTCAT +
Preference number: 5 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSQDSAV*MLLESH
Trigger: ATGAGACTCCAGCAGCATCAAGACAGCAGAATCCTG...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGGAACTGGAGCAGCCATaGCTCTTAACTTCCATGTCG +
Preference number: 5 (lower is better)
Translates to: LYEVNREDDSKGIETRRWELEQP*LLTSMS
Trigger: CGACATGGAAGTTAAGAGCAATGGCTGCTCCAGTTC...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTGAACTGGAGCAGCCATaGCTCTTAACTTCCATGTCG +
Preference number: 5 (lower is better)
Translates to: KCSKSVILGSEALMSLFSELEQP*LLTSMS
Trigger: CGACATGGAAGTTAAGAGCAATGGCTGCTCCAGTTC...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTACATCTCACTTCTACTaGGTTCTGAGAAGTCACCTG +
Preference number: 5 (lower is better)
Translates to: KSLTNKCSKSVILGSEALTSHFY*VLRSHL
Trigger: CAGGTGACTTCTCAGAACCAAGTAGAAGTGAGATGT...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCGCTTCAGCTGCTCTCTaGGCTTCCTTTATCTTCCTG +
Preference number: 5 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSASAAL*ASFIFL
Trigger: CAGGAAGATAAAGGAAGCCAAGAGAGCAGCTGAAGC...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGGCTTCAGCTGCTCTCTaGGCTTCCTTTATCTTCCTG +
Preference number: 5 (lower is better)
Translates to: LYEVNREDDSKGIETRRWASAAL*ASFIFL
Trigger: CAGGAAGATAAAGGAAGCCAAGAGAGCAGCTGAAGC...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS TCA 90 bp TTGCTGCAGAACCAAGAGAATCTGTGTTTATATCACTGGTTTCTTTaGCAGTCATCTGAGGTGGCTCTAGCTGAAGAGGGATATTTGAAT +
Preference number: 5 (lower is better)
Translates to: LLQNQENLCLYHWFL*QSSEVALAEEGYLN
Trigger: ATTCAAATATCCCTCTTCAGCTAGAGCCACCTCAGATGACTGTCAAAGAAACCAGTGATATAAACACAGATTCTCTTGGTTCTGCAGCAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS GCA 90 bp TTGGCTTCCTTTATCTTCCTGGCAACTATTTTCTTCTTCCTCAGTTaGATTCTTATAAGAACAGTCTTTGATAGATGCCTCCGGGGCATA +
Preference number: 5 (lower is better)
Translates to: LASFIFLATIFFFLS*ILIRTVFDRCLRGI
Trigger: TATGCCCCGGAGGCATCTATCAAAGACTGTTCTTATAAGAATGCAACTGAGGAAGAAGAAAATAGTTGCCAGGAAGATAAAGGAAGCCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp ACAACCTATGTATCTTTGGTTAAACAATTTTCTCGCCAGCATCAACATTTGCATATAACTCGCATCTTCTaGGTCAACTCCCTCCTCCTC +
Preference number: 5 (lower is better)
Translates to: TTYVSLVKQFSRQHQHLHITRIF*VNSLLL
Trigger: GAGGAGGAGGGAGTTGACCAAGAAGATGCGAGTTAT...ATGCAAATGTTGATGCTGGCGAGAAAATTGTTTAACCAAAGATACATAGGTTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTCTCAGAACATGTATCTaGGCTGTTATCTTCCAAGGA +
Preference number: 5 (lower is better)
Translates to: KSLTNKCSKSVILGSEALLRTCI*AVIFQG
Trigger: TCCTTGGAAGATAACAGCCAAGATACATGTTCTGAG...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGACCAGGTTTTGTCTTTaGGCACTATCGTCTCCTGCA +
Preference number: 5 (lower is better)
Translates to: LYEVNREDDSKGIETRRWTRFCL*ALSSPA
Trigger: TGCAGGAGACGATAGTGCCAAAAGACAAAACCTGGT...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCACCAGGTTTTGTCTTTaGGCACTATCGTCTCCTGCA +
Preference number: 5 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSTRFCL*ALSSPA
Trigger: TGCAGGAGACGATAGTGCCAAAAGACAAAACCTGGT...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS TCA 90 bp TTTTCAGTCATTGTCCGAGGAAAAACATCAAACTTGAAAGTTGGTTaGGAGCCACCATATTCATCATCACTGTTGACTTCCTCAAGATGC +
Preference number: 5 (lower is better)
Translates to: FSVIVRGKTSNLKVG*EPPYSSSLLTSSRC
Trigger: GCATCTTGAGGAAGTCAACAGTGATGATGAATATGGTGGCTCTCAACCAACTTTCAAGTTTGATGTTTTTCCTCGGACAATGACTGAAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS CCA 90 bp ATCATCTTCTGCAACCTCTTCTCCTTCCCCGTACATTGGGTTTGGTaGATATTCATACTTAGTTACTCTCAAGTCAAAAGTCACTTTCTT +
Preference number: 5 (lower is better)
Translates to: IIFCNLFSFPVHWVW*IFILSYSQVKSHFL
Trigger: AAGAAAGTGACTTTTGACTTGAGAGTAACTAAGTATGAATATCCACCAAACCCAATGTACGGGGAAGGAGAAGAGGTTGCAGAAGATGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS CCA 90 bp AAGATCATCTTCTGCAACCTCTTCTCCTTCCCCGTACATTGGGTTTaGTGGATATTCATACTTAGTTACTCTCAAGTCAAAAGTCACTTT +
Preference number: 5 (lower is better)
Translates to: KIIFCNLFSFPVHWV*WIFILSYSQVKSHF
Trigger: AAAGTGACTTTTGACTTGAGAGTAACTAAGTATGAATATCCACCAAACCCAATGTACGGGGAAGGAGAAGAGGTTGCAGAAGATGATCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS CCA 90 bp TTCCTTAAGATCATCTTCTGCAACCTCTTCTCCTTCCCCGTACATTaGGTTTGGTGGATATTCATACTTAGTTACTCTCAAGTCAAAAGT +
Preference number: 5 (lower is better)
Translates to: FLKIIFCNLFSFPVH*VWWIFILSYSQVKS
Trigger: ACTTTTGACTTGAGAGTAACTAAGTATGAATATCCACCAAACCCAATGTACGGGGAAGGAGAAGAGGTTGCAGAAGATGATCTTAAGGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTTACCATTATCTGAAGTaGCTCCAGAAACAGTGGGTG +
Preference number: 5 (lower is better)
Translates to: KCSKSVILGSEALMSLFSYHYLK*LQKQWV
Trigger: CACCCACTGTTTCTGGAGCAACTTCAGATAATGGTA...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGTCAGAACCACTGGGATaGTCATTCTTCCCTTCTAAG +
Preference number: 5 (lower is better)
Translates to: LYEVNREDDSKGIETRRWSEPLG*SFFPSK
Trigger: CTTAGAAGGGAAGAATGACAATCCCAGTGGTTCTGA...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTCTTCCTCAAGATGCTTaGTCTTTCTCTTTGCCTTTT +
Preference number: 5 (lower is better)
Translates to: KSLTNKCSKSVILGSEALLPQDA*SFSLPF
Trigger: AAAAGGCAAAGAGAAAGACAAAGCATCTTGAGGAAG...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTTCCACTCGTTCATTTTaGAAACCACATCGAACTCTT +
Preference number: 5 (lower is better)
Translates to: KSLTNKCSKSVILGSEALSTRSF*KPHRTL
Trigger: AAGAGTTCGATGTGGTTTCAAAAATGAACGAGTGGA...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATCTTCCAAGGACACTaGGTCATTATTACCAAGACT +
Preference number: 5 (lower is better)
Translates to: KSLTNKCSKSVILGSEALIFQGH*VIITKT
Trigger: AGTCTTGGTAATAATGACCAAGTGTCCTTGGAAGAT...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTGTTATTTCTACCTTCTaGTTCAACATGTTCAGGCTC +
Preference number: 5 (lower is better)
Translates to: KSLTNKCSKSVILGSEALVISTF*FNMFRL
Trigger: GAGCCTGAACATGTTGAACAAGAAGGTAGAAATAAC...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGAATGGCTGGGGGACATaGGAATCACATGTAATTCCA +
Preference number: 5 (lower is better)
Translates to: LYEVNREDDSKGIETRRWNGWGT*ESHVIP
Trigger: TGGAATTACATGTGATTCCAATGTCCCCCAGCCATT...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCATGTTTTTCCAACAATaGATGGAGGAGCCTGACCCT +
Preference number: 5 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSMFFQQ*MEEPDP
Trigger: AGGGTCAGGCTCCTCCATCAATTGTTGGAAAAACAT...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTGACATGCCTGTGTGTTaGTCTTCACATCATCTTCTC +
Preference number: 5 (lower is better)
Translates to: KCSKSVILGSEALMSLFSDMPVC*SSHHLL
Trigger: GAGAAGATGATGTGAAGACAAACACACAGGCATGTC...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGACATCTCACTTCTACTaGGTTCTGAGAAGTCACCTG +
Preference number: 5 (lower is better)
Translates to: LYEVNREDDSKGIETRRWTSHFY*VLRSHL
Trigger: CAGGTGACTTCTCAGAACCAAGTAGAAGTGAGATGT...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCCTTCCCAGAACTTGCTaGAATTCCACATCTCACTTC +
Preference number: 5 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSLPRTC*NSTSHF
Trigger: GAAGTGAGATGTGGAATTCAAGCAAGTTCTGGGAAG...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTCTCAGTTATCCCAGCTaGAGCCTTTTTCTTCTTCTG +
Preference number: 5 (lower is better)
Translates to: KCSKSVILGSEALMSLFSLSYPS*SLFLLL
Trigger: CAGAAGAAGAAAAAGGCTCAAGCTGGGATAACTGAG...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS CCA 90 bp TGGACTGAGAAACCAGAATCCAAATTTGTCTCAGAACATGTATCTTaGCTGTTATCTTCCAAGGACACTTGGTCATTATTACCAAGACTT +
Preference number: 5 (lower is better)
Translates to: WTEKPESKFVSEHVS*LLSSKDTWSLLPRL
Trigger: AAGTCTTGGTAATAATGACCAAGTGTCCTTGGAAGATAACAGCCAAGATACATGTTCTGAGACAAATTTGGATTCTGGTTTCTCAGTCCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp AAATCCCTGACCAACAAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTGTTCAAGTTGATCCATaGCAGAACGAAAAGAAACAT +
Preference number: 5 (lower is better)
Translates to: KSLTNKCSKSVILGSEALVQVDP*QNEKKH
Trigger: ATGTTTCTTTTCGTTCTGCAATGGATCAACTTGAAC...AAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTTGTTGGTCAGGGATTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCCTCAGAACATGTATCTaGGCTGTTATCTTCCAAGGA +
Preference number: 5 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSLRTCI*AVIFQG
Trigger: TCCTTGGAAGATAACAGCCAAGATACATGTTCTGAG...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp ACAACCTATGTATCTTTGGTTAAACAATTTTCTCGCCAGCATCAACATTTGCATAATGGCTGGGGGACATaGGAATCACATGTAATTCCA +
Preference number: 5 (lower is better)
Translates to: TTYVSLVKQFSRQHQHLHNGWGT*ESHVIP
Trigger: TGGAATTACATGTGATTCCAATGTCCCCCAGCCATT...ATGCAAATGTTGATGCTGGCGAGAAAATTGTTTAACCAAAGATACATAGGTTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp ACAACCTATGTATCTTTGGTTAAACAATTTTCTCGCCAGCATCAACATTTGCATCTTCCCAGAACTTGCTaGAATTCCACATCTCACTTC +
Preference number: 5 (lower is better)
Translates to: TTYVSLVKQFSRQHQHLHLPRTC*NSTSHF
Trigger: GAAGTGAGATGTGGAATTCAAGCAAGTTCTGGGAAG...ATGCAAATGTTGATGCTGGCGAGAAAATTGTTTAACCAAAGATACATAGGTTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp ACAACCTATGTATCTTTGGTTAAACAATTTTCTCGCCAGCATCAACATTTGCATCTCAGTTATCCCAGCTaGAGCCTTTTTCTTCTTCTG +
Preference number: 5 (lower is better)
Translates to: TTYVSLVKQFSRQHQHLHLSYPS*SLFLLL
Trigger: CAGAAGAAGAAAAAGGCTCAAGCTGGGATAACTGAG...ATGCAAATGTTGATGCTGGCGAGAAAATTGTTTAACCAAAGATACATAGGTTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTATTATCCTTTGGAACTaGAGTAGCACCCACATCTTC +
Preference number: 5 (lower is better)
Translates to: KCSKSVILGSEALMSLFSIILWN*SSTHIF
Trigger: GAAGATGTGGGTGCTACTCAAGTTCCAAAGGATAAT...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTTTCAGAAGTGTTGGCTaGTTAAGAACCAAACGTGTT +
Preference number: 5 (lower is better)
Translates to: KCSKSVILGSEALMSLFSFRSVG*LRTKRV
Trigger: AACACGTTTGGTTCTTAACAAGCCAACACTTCTGAA...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTGAGGTTTTTCAGTCATaGTCCGAGGAAAAACATCAA +
Preference number: 5 (lower is better)
Translates to: KCSKSVILGSEALMSLFSEVFQS*SEEKHQ
Trigger: TTGATGTTTTTCCTCGGACAATGACTGAAAAACCTC...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTTTTCAAAGCAGCTGGTaGAGGTTTTTCAGTCATTGT +
Preference number: 5 (lower is better)
Translates to: KCSKSVILGSEALMSLFSFQSSW*RFFSHC
Trigger: ACAATGACTGAAAAACCTCAACCAGCTGCTTTGAAA...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCACTTCAGGACAAGGATaGCTGCTGTTTTCTTTCAAA +
Preference number: 5 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSTSGQG*LLFSFK
Trigger: TTTGAAAGAAAACAGCAGCAATCCTTGTCCTGAAGT...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGGCTGAAGAGGGATATTaGAATCAGAAATTACTTCCC +
Preference number: 5 (lower is better)
Translates to: LYEVNREDDSKGIETRRWAEEGY*NQKLLP
Trigger: GGGAAGTAATTTCTGATTCAAATATCCCTCTTCAGC...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp TTATATGAAGTAAACAGAGAAGATGACTCTAAGGGGATAGAGACTAGAAGATGGTTTTCTTCCCAGAACTaGCTTGAATTCCACATCTCA +
Preference number: 5 (lower is better)
Translates to: LYEVNREDDSKGIETRRWFSSQN*LEFHIS
Trigger: TGAGATGTGGAATTCAAGCAAGTTCTGGGAAGAAAA...CCATCTTCTAGTCTCTATCCCCTTAGAGTCATCTTCTCTGTTTACTTCATATAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCGCTTTGTCTTTCTCTTaGCCTTTTTACCTACATAAG +
Preference number: 5 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSALSFS*PFYLHK
Trigger: CTTATGTAGGTAAAAAGGCAAAGAGAAAGACAAAGC...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp ACAGTAAAGGGAAACTTCGTGTTTCCTCATAACATCAATGACAGAAAAAGATCCTATTCATCATCACTGTaGACTTCCTCAAGATGCTTT +
Preference number: 5 (lower is better)
Translates to: TVKGNFVFPHNINDRKRSYSSSL*TSSRCF
Trigger: AAAGCATCTTGAGGAAGTCAACAGTGATGATGAATA...GGATCTTTTTCTGTCATTGATGTTATGAGGAAACACGAAGTTTCCCTTTACTGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp ACAACCTATGTATCTTTGGTTAAACAATTTTCTCGCCAGCATCAACATTTGCATGAGGTTTTTCAGTCATaGTCCGAGGAAAAACATCAA +
Preference number: 5 (lower is better)
Translates to: TTYVSLVKQFSRQHQHLHEVFQS*SEEKHQ
Trigger: TTGATGTTTTTCCTCGGACAATGACTGAAAAACCTC...ATGCAAATGTTGATGCTGGCGAGAAAATTGTTTAACCAAAGATACATAGGTTGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp ACAACCTATGTATCTTTGGTTAAACAATTTTCTCGCCAGCATCAACATTTGCATTTTCAAAGCAGCTGGTaGAGGTTTTTCAGTCATTGT +
Preference number: 5 (lower is better)
Translates to: TTYVSLVKQFSRQHQHLHFQSSW*RFFSHC
Trigger: ACAATGACTGAAAAACCTCAACCAGCTGCTTTGAAA...ATGCAAATGTTGATGCTGGCGAGAAAATTGTTTAACCAAAGATACATAGGTTGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp ACAACCTATGTATCTTTGGTTAAACAATTTTCTCGCCAGCATCAACATTTGCATGCTGAAGAGGGATATTaGAATCAGAAATTACTTCCC +
Preference number: 5 (lower is better)
Translates to: TTYVSLVKQFSRQHQHLHAEEGY*NQKLLP
Trigger: GGGAAGTAATTTCTGATTCAAATATCCCTCTTCAGC...ATGCAAATGTTGATGCTGGCGAGAAAATTGTTTAACCAAAGATACATAGGTTGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp AAATGTTCCAAGTCAGTAATTCTAGGGTCAGAAGCACTTATGTCACTATTCTCTACTATAGAAATAACCTaGACATGCCTGTGTGTTTGT +
Preference number: 5 (lower is better)
Translates to: KCSKSVILGSEALMSLFSTIEIT*TCLCVC
Trigger: ACAAACACACAGGCATGTCAAGGTTATTTCTATAGT...AGAGAATAGTGACATAAGTGCTTCTGACCCTAGAATTACTGACTTGGAACATTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS CCA 90 bp TTTGTCTCAGAACATGTATCTTGGCTGTTATCTTCCAAGGACACTTaGTCATTATTACCAAGACTTATTTGTTTAAGAGCTAGTTCAAGT +
Preference number: 5 (lower is better)
Translates to: FVSEHVSWLLSSKDT*SLLPRLICLRASSS
Trigger: ACTTGAACTAGCTCTTAAACAAATAAGTCTTGGTAATAATGACCAAGTGTCCTTGGAAGATAACAGCCAAGATACATGTTCTGAGACAAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp ACAACCTATGTATCTTTGGTTAAACAATTTTCTCGCCAGCATCAACATTTGCATGCTTTGTCTTTCTCTTaGCCTTTTTACCTACATAAG +
Preference number: 5 (lower is better)
Translates to: TTYVSLVKQFSRQHQHLHALSFS*PFYLHK
Trigger: CTTATGTAGGTAAAAAGGCAAAGAGAAAGACAAAGC...ATGCAAATGTTGATGCTGGCGAGAAAATTGTTTAACCAAAGATACATAGGTTGT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS-3UTR CAA 90 bp ACAACCTATGTATCTTTGGTTAAACAATTTTCTCGCCAGCATCAACATTTGCATACTATAGAAATAACCTaGACATGCCTGTGTGTTTGT +
Preference number: 5 (lower is better)
Translates to: TTYVSLVKQFSRQHQHLHTIEIT*TCLCVC
Trigger: ACAAACACACAGGCATGTCAAGGTTATTTCTATAGT...ATGCAAATGTTGATGCTGGCGAGAAAATTGTTTAACCAAAGATACATAGGTTGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS GCA 72 bp GCAGGCAGCTCTGCAGGTCCTGCAGTAGTGCTCAACTaGTCTTCAGCACCAGCTGGGAGAACCGGGGCGCAC +
Preference number: 6 (lower is better)
Translates to: AGSSAGPAVVLN*SSAPAGRTGAH
Trigger: GTGCGCCCCGGTTCTCCCAGCTGGTGCTGAAGAGCAGTTGAGCACTACTGCAGGACCTGCAGAGCTGCCTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS TCA 72 bp CCCTGTCCGACAGCTCTGCCTCTGGGGCTTCCTTCTTaGACAGGCACCTGGGGATGGTCCAGAGCTGCATCA +
Preference number: 6 (lower is better)
Translates to: PCPTALPLGLPS*TGTWGWSRAAS
Trigger: TGATGCAGCTCTGGACCATCCCCAGGTGCCTGTTCAAGAAGGAAGCCCCAGAGGCAGAGCTGTCGGACAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS CAA 72 bp TCCCTGTCCGACAGCTCTGCCTCTGGGGCTTCCTTCTaGAACAGGCACCTGGGGATGGTCCAGAGCTGCATC +
Preference number: 6 (lower is better)
Translates to: SLSDSSASGASF*NRHLGMVQSCI
Trigger: GATGCAGCTCTGGACCATCCCCAGGTGCCTGTTCAAGAAGGAAGCCCCAGAGGCAGAGCTGTCGGACAGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS CCA 72 bp GCTGCTCTTCATTTCCCTGTCCGACAGCTCTGCCTCTaGGGCTTCCTTCTTGAACAGGCACCTGGGGATGGT +
Preference number: 6 (lower is better)
Translates to: AALHFPVRQLCL*GFLLEQAPGDG
Trigger: ACCATCCCCAGGTGCCTGTTCAAGAAGGAAGCCCCAGAGGCAGAGCTGTCGGACAGGGAAATGAAGAGCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS CAA 90 bp CTCTTCATTTCCCTGTCCGACAGCTCTGCCTCTGGGGCTTCCTTCTaGAACAGGCACCTGGGGATGGTCCAGAGCTGCATCACTGTCAGA +
Preference number: 6 (lower is better)
Translates to: LFISLSDSSASGASF*NRHLGMVQSCITVR
Trigger: TCTGACAGTGATGCAGCTCTGGACCATCCCCAGGTGCCTGTTCAAGAAGGAAGCCCCAGAGGCAGAGCTGTCGGACAGGGAAATGAAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS TCA 72 bp CTCATCAGAATCATCCAAAACCACCACCACTTCAGGTaGTCCAGGATCTGCTGCTGCTGCCGCTGCTGCCGC +
Preference number: 6 (lower is better)
Translates to: LIRIIQNHHHFR*SRICCCCRCCR
Trigger: GCGGCAGCAGCGGCAGCAGCAGCAGATCCTGGATCACCTGAAGTGGTGGTGGTTTTGGATGATTCTGATGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS GCA 72 bp CCATCACGTTCAGGATGTGCTTCAGCACTACTGGGCTaGTCTTCATTTCCCTGTCCGACAGCTCTGCCTCTG +
Preference number: 6 (lower is better)
Translates to: PSRSGCASALLG*SSFPCPTALPL
Trigger: CAGAGGCAGAGCTGTCGGACAGGGAAATGAAGAGCAGCCCAGTAGTGCTGAAGCACATCCTGAACGTGATGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS CAA 72 bp GGTTTGCATGGGTGTTCCTCACAGGATTCTGCTGTCTaGATGCTGCTGGAGTCTCATCAGCTGAGGACCCGG +
Preference number: 6 (lower is better)
Translates to: GLHGCSSQDSAV*MLLESHQLRTR
Trigger: CCGGGTCCTCAGCTGATGAGACTCCAGCAGCATCAAGACAGCAGAATCCTGTGAGGAACACCCATGCAAACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS GCA 72 bp GCATCTTCTTGGTCAACTCCCTCCTCCTCCTCTTCATaGTCCTCCTCTTCTTCCTGCTCCTCCTCTTCCTCT +
Preference number: 6 (lower is better)
Translates to: ASSWSTPSSSSS*SSSSSCSSSSS
Trigger: AGAGGAAGAGGAGGAGCAGGAAGAAGAGGAGGAGCATGAAGAGGAGGAGGAGGGAGTTGACCAAGAAGATGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS CAA 90 bp CGCTGCTGCCGCCGCCTCTGGCTCATTTGGTGCAGATCTGTTGTCTaGGTAATTATATGGGTGGTGTCGCAGAACATCCTGCAAAAAGCG +
Preference number: 6 (lower is better)
Translates to: RCCRRLWLIWCRSVV*VIIWVVSQNILQKA
Trigger: CGCTTTTTGCAGGATGTTCTGCGACACCACCCATATAATTACCAAGACAACAGATCTGCACCAAATGAGCCAGAGGCGGCGGCAGCAGCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS GCA 72 bp TCAACCAGGTTTGCATGGGTGTTCCTCACAGGATTCTaGTGTCTTGATGCTGCTGGAGTCTCATCAGCTGAG +
Preference number: 6 (lower is better)
Translates to: STRFAWVFLTGF*CLDAAGVSSAE
Trigger: CTCAGCTGATGAGACTCCAGCAGCATCAAGACAGCAGAATCCTGTGAGGAACACCCATGCAAACCTGGTTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS GCA 72 bp AGCCACTGTCTCAAGAGAACCATCACGTTCAGGATGTaGTTCAGCACTACTGGGCTGCTCTTCATTTCCCTG +
Preference number: 6 (lower is better)
Translates to: SHCLKRTITFRM*FSTTGLLFISL
Trigger: CAGGGAAATGAAGAGCAGCCCAGTAGTGCTGAAGCACATCCTGAACGTGATGGTTCTCTTGAGACAGTGGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS CAA 72 bp CGCCGCCTCTGGCTCATTTGGTGCAGATCTGTTGTCTaGGTAATTATATGGGTGGTGTCGCAGAACATCCTG +
Preference number: 6 (lower is better)
Translates to: RRLWLIWCRSVV*VIIWVVSQNIL
Trigger: CAGGATGTTCTGCGACACCACCCATATAATTACCAAGACAACAGATCTGCACCAAATGAGCCAGAGGCGGCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS TCA 72 bp GGACTGCTGCTGTCCCCGTTCCAGTTTTTGAATAACTaGTGGTCGAACTGCAACTTCTGCGTGTTCCTGAGA +
Preference number: 6 (lower is better)
Translates to: GLLLSPFQFLNN*WSNCNFCVFLR
Trigger: TCTCAGGAACACGCAGAAGTTGCAGTTCGACCATCAGTTATTCAAAAACTGGAACGGGGACAGCAGCAGTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS TCA 72 bp TCTCTGGCGGTCAGTTCAGATAGGGCACTCAGCGACTaGCAAGAGGACCCACAATCAAAACTCATGTCAGAA +
Preference number: 6 (lower is better)
Translates to: SLAVSSDRALSD*QEDPQSKLMSE
Trigger: TTCTGACATGAGTTTTGATTGTGGGTCCTCTTGTCAGTCGCTGAGTGCCCTATCTGAACTGACCGCCAGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS CAA 72 bp CATCTTCTCTCCCCTGAGGACATGTTTTTCCAACAATaGATGGAGGAGCCTGACCCTGAGGTGAGGCTTCAT +
Preference number: 6 (lower is better)
Translates to: HLLSPEDMFFQQ*MEEPDPEVRLH
Trigger: ATGAAGCCTCACCTCAGGGTCAGGCTCCTCCATCAATTGTTGGAAAAACATGTCCTCAGGGGAGAGAAGATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS CAA 72 bp CGCGAGAGCTTGAGCGCTAGTGCTTCAGCTGCTCTCTaGGCTTCCTTTATCTTCCTGGCAACTATTTTCTTC +
Preference number: 6 (lower is better)
Translates to: RESLSASASAAL*ASFIFLATIFF
Trigger: GAAGAAAATAGTTGCCAGGAAGATAAAGGAAGCCAAGAGAGCAGCTGAAGCACTAGCGCTCAAGCTCTCGCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS TCA 72 bp GTCCGACGTCTGCTCTGTCTGGTCAGGCTTCTGTGCTaGGAACTAAACAAGTGCTGTCCATTGTTCTTCATT +
Preference number: 6 (lower is better)
Translates to: VRRLLCLVRLLC*ELNKCCPLFFI
Trigger: AATGAAGAACAATGGACAGCACTTGTTTAGTTCTCAGCACAGAAGCCTGACCAGACAGAGCAGACGTCGGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000126932.2
CDS TCA 72 bp AGATCCACAGGAGTTCAAAGCTGTTTGGCGAATCACTaGCACAGCATAGGCAGCATGGTCTCCTGCAAAACT +
Preference number: 6 (lower is better)
Translates to: RSTGVQSCLANH*HSIGSMVSCKT
Trigger: AGTTTTGCAGGAGACCATGCTGCCTATGCTGTGTCAGTGATTCGCCAAACAGCTTTGAACTCCTGTGGATCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS GCA 72 bp AGGCAGGGAGTGAAAATGGCCAGTAGAATCAGCACTTaGTTTAGAGTCACTGGGTTTGCCATCGGTGTCTTT +
Preference number: 6 (lower is better)
Translates to: RQGVKMASRIST*FRVTGFAIGVF
Trigger: AAAGACACCGATGGCAAACCCAGTGACTCTAAAGCAAGTGCTGATTCTACTGGCCATTTTCACTCCCTGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS TCA 72 bp AATTCCAAGGACTGCTGCTGTCCCCGTTCCAGTTTTTaGATAACTGATGGTCGAACTGCAACTTCTGCGTGT +
Preference number: 6 (lower is better)
Translates to: NSKDCCCPRSSF*ITDGRTATSAC
Trigger: ACACGCAGAAGTTGCAGTTCGACCATCAGTTATTCAAAAACTGGAACGGGGACAGCAGCAGTCCTTGGAATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS TCA 72 bp ACGAGACCCACAACTGAACCTCTCTTCAGAACTCACTaGGCGCTTCTGTTTCAGAAGTGTTGGCTTGTTAAG +
Preference number: 6 (lower is better)
Translates to: TRPTTEPLFRTH*ALLFQKCWLVK
Trigger: CTTAACAAGCCAACACTTCTGAAACAGAAGCGCTCAGTGAGTTCTGAAGAGAGGTTCAGTTGTGGGTCTCGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS TCA 72 bp TGCTTCTTTGCAAGCCACTTGAGGTGGGTCAGCTTCTaGCTGCAGATGAACAGCAGAATTACATGCTACTTC +
Preference number: 6 (lower is better)
Translates to: CFFASHLRWVSF*LQMNSRITCYF
Trigger: GAAGTAGCATGTAATTCTGCTGTTCATCTGCAGTCAGAAGCTGACCCACCTCAAGTGGCTTGCAAAGAAGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS CCA 72 bp GTCAATGTCCTGAACTACTTCAATGTGGCCGGCCAATaGCTGGGGGACATTGGAATCACATGTAATTCCAAA +
Preference number: 6 (lower is better)
Translates to: VNVLNYFNVAGQ*LGDIGITCNSK
Trigger: TTTGGAATTACATGTGATTCCAATGTCCCCCAGCCATTGGCCGGCCACATTGAAGTAGTTCAGGACATTGAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS CAA 90 bp ACGTCAGAATCATACACCACTTCAGGCACACAAGTTACACTGCCCTaGTCTTCTATGTCAAGCGCTTTCTTGTCAAGGTCTGCTTCTTTG +
Preference number: 6 (lower is better)
Translates to: TSESYTTSGTQVTLP*SSMSSAFLSRSASL
Trigger: CAAAGAAGCAGACCTTGACAAGAAAGCGCTTGACATAGAAGACAAGGGCAGTGTAACTTGTGTGCCTGAAGTGGTGTATGATTCTGACGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS TCA 72 bp TTTGGGTCAGCATGGCCCTCTTTCAAAGCAGCTGGTTaGGGTTTTTCAGTCATTGTCCGAGGAAAAACATCA +
Preference number: 6 (lower is better)
Translates to: FGSAWPSFKAAG*GFSVIVRGKTS
Trigger: TGATGTTTTTCCTCGGACAATGACTGAAAAACCTCAACCAGCTGCTTTGAAAGAGGGCCATGCTGACCCAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS GCA 72 bp GGCTTCATGAACTACTACTTCCTTAAGATCATCTTCTaGAACCTCTTCTCCTTCCCCGTACATTGGGTTTGG +
Preference number: 6 (lower is better)
Translates to: GFMNYYFLKIIF*NLFSFPVHWVW
Trigger: CCAAACCCAATGTACGGGGAAGGAGAAGAGGTTGCAGAAGATGATCTTAAGGAAGTAGTAGTTCATGAAGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS CCA 72 bp CAGGACCATGAGACTCACAGTTCATATCCCCAAGGCTaGTATTCTTCTGGTTCGGAAGGTTTATTTCTTGTG +
Preference number: 6 (lower is better)
Translates to: QDHETHSSYPQG*YSSGSEGLFLV
Trigger: CACAAGAAATAAACCTTCCGAACCAGAAGAATACCAGCCTTGGGGATATGAACTGTGAGTCTCATGGTCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS CCA 72 bp AATCAGAAATTACTTCCCGGTCACAGTCACTATCACTaGACACAACATCCACAAACACCACCTGTGGTGAGT +
Preference number: 6 (lower is better)
Translates to: NQKLLPGHSHYH*TQHPQTPPVVS
Trigger: ACTCACCACAGGTGGTGTTTGTGGATGTTGTGTCCAGTGATAGTGACTGTGACCGGGAAGTAATTTCTGATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS CCA 72 bp TTGTCTTTTGGCACTATCGTCTCCTGCATTGGGCTTTaGGTCATGCCTATTAAGATCAATGCCAACTTCTGG +
Preference number: 6 (lower is better)
Translates to: LSFGTIVSCIGL*VMPIKINANFW
Trigger: CCAGAAGTTGGCATTGATCTTAATAGGCATGACCCAAAGCCCAATGCAGGAGACGATAGTGCCAAAAGACAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS CAA 72 bp GAACTCACTGAGCGCTTCTGTTTCAGAAGTGTTGGCTaGTTAAGAACCAAACGTGTTTCTTCTTGGGGACGA +
Preference number: 6 (lower is better)
Translates to: ELTERFCFRSVG*LRTKRVSSWGR
Trigger: TCGTCCCCAAGAAGAAACACGTTTGGTTCTTAACAAGCCAACACTTCTGAAACAGAAGCGCTCAGTGAGTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS CAA 72 bp CCAGTAGAATCAGCACTTGCTTTAGAGTCACTGGGTTaGCCATCGGTGTCTTTCAGTTCAACACAGTTTTCG +
Preference number: 6 (lower is better)
Translates to: PVESALALESLG*PSVSFSSTQFS
Trigger: CGAAAACTGTGTTGAACTGAAAGACACCGATGGCAAACCCAGTGACTCTAAAGCAAGTGCTGATTCTACTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS TCA 72 bp CTGTGTAATCACCTGACGAGAACTGCTACCATTATCTaGAGTTGCTCCAGAAACAGTGGGTGTTTCATTCCT +
Preference number: 6 (lower is better)
Translates to: LCNHLTRTATII*SCSRNSGCFIP
Trigger: AGGAATGAAACACCCACTGTTTCTGGAGCAACTTCAGATAATGGTAGCAGTTCTCGTCAGGTGATTACACAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS TCA 72 bp GGAAGGTTTATTTCTTGTGATTCTCTCTGGAGTTCATaGGCCACTGTCTCAAGAGAACCATCACGTTCAGGA +
Preference number: 6 (lower is better)
Translates to: GRFISCDSLWSS*ATVSREPSRSG
Trigger: TCCTGAACGTGATGGTTCTCTTGAGACAGTGGCTCATGAACTCCAGAGAGAATCACAAGAAATAAACCTTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS TCA 72 bp TGGGGGACATTGGAATCACATGTAATTCCAAAACCCTaGGCATCATCCCTCTTACCTTCTGTGTCATCTGTA +
Preference number: 6 (lower is better)
Translates to: WGTLESHVIPKP*ASSLLPSVSSV
Trigger: TACAGATGACACAGAAGGTAAGAGGGATGATGCTCAGGGTTTTGGAATTACATGTGATTCCAATGTCCCCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS TCA 72 bp CATTTCCTTGTCAGGTTTTTGAAGGTGGCCTGCTACTaGCTGACAGGGATCATTAGAATCAACACTCACTTC +
Preference number: 6 (lower is better)
Translates to: HFLVRFLKVACY*LTGIIRINTHF
Trigger: GAAGTGAGTGTTGATTCTAATGATCCCTGTCAGTCAGTAGCAGGCCACCTTCAAAAACCTGACAAGGAAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS GCA 72 bp CTCAGTTGCATTCTTATAAGAACAGTCTTTGATAGATaGCTCCGGGGCATAAGACCATGGCATCTAGAGACA +
Preference number: 6 (lower is better)
Translates to: LSCILIRTVFDR*LRGIRPWHLET
Trigger: TGTCTCTAGATGCCATGGTCTTATGCCCCGGAGGCATCTATCAAAGACTGTTCTTATAAGAATGCAACTGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS CCA 72 bp CTCATTTGGTGCAGATCTGTTGTCTTGGTAATTATATaGGTGGTGTCGCAGAACATCCTGCAAAAAGCGTTC +
Preference number: 6 (lower is better)
Translates to: LIWCRSVVLVII*VVSQNILQKAF
Trigger: GAACGCTTTTTGCAGGATGTTCTGCGACACCACCCATATAATTACCAAGACAACAGATCTGCACCAAATGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS CCA 72 bp AGTGTTGGCTTGTTAAGAACCAAACGTGTTTCTTCTTaGGGACGAACTGTATTTGAACGAGATGCCTCACGA +
Preference number: 6 (lower is better)
Translates to: SVGLLRTKRVSS*GRTVFERDASR
Trigger: TCGTGAGGCATCTCGTTCAAATACAGTTCGTCCCCAAGAAGAAACACGTTTGGTTCTTAACAAGCCAACACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS CAA 72 bp CAGTCATCTGAGGTGGCTCTAGCTGAAGAGGGATATTaGAATCAGAAATTACTTCCCGGTCACAGTCACTAT +
Preference number: 6 (lower is better)
Translates to: QSSEVALAEEGY*NQKLLPGHSHY
Trigger: ATAGTGACTGTGACCGGGAAGTAATTTCTGATTCAAATATCCCTCTTCAGCTAGAGCCACCTCAGATGACTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS CAA 90 bp CTCTCTTCAGAACTCACTGAGCGCTTCTGTTTCAGAAGTGTTGGCTaGTTAAGAACCAAACGTGTTTCTTCTTGGGGACGAACTGTATTT +
Preference number: 6 (lower is better)
Translates to: LSSELTERFCFRSVG*LRTKRVSSWGRTVF
Trigger: AAATACAGTTCGTCCCCAAGAAGAAACACGTTTGGTTCTTAACAAGCCAACACTTCTGAAACAGAAGCGCTCAGTGAGTTCTGAAGAGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS CAA 90 bp CAGGTGGTTCAACTACTGCCTGGACTGAGAAACCAGAATCCAAATTaGTCTCAGAACATGTATCTTGGCTGTTATCTTCCAAGGACACTT +
Preference number: 6 (lower is better)
Translates to: QVVQLLPGLRNQNPN*SQNMYLGCYLPRTL
Trigger: AAGTGTCCTTGGAAGATAACAGCCAAGATACATGTTCTGAGACAAATTTGGATTCTGGTTTCTCAGTCCAGGCAGTAGTTGAACCACCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS TCA 72 bp TTTGAAACCACATCGAACTCTTGTTTAGGCAGGGAGTaGAAATGGCCAGTAGAATCAGCACTTGCTTTAGAG +
Preference number: 6 (lower is better)
Translates to: FETTSNSCLGRE*KWPVESALALE
Trigger: CTCTAAAGCAAGTGCTGATTCTACTGGCCATTTTCACTCCCTGCCTAAACAAGAGTTCGATGTGGTTTCAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS TCA 72 bp TACTTCAGGTTCAGGTGGTTCAACTACTGCCTGGACTaGGAAACCAGAATCCAAATTTGTCTCAGAACATGT +
Preference number: 6 (lower is better)
Translates to: YFRFRWFNYCLD*ETRIQICLRTC
Trigger: ACATGTTCTGAGACAAATTTGGATTCTGGTTTCTCAGTCCAGGCAGTAGTTGAACCACCTGAACCTGAAGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS TCA 72 bp GAGACATACTTCCTGATGATGTCGGTCGCTTTCAGCTaGATCCAAATAGCCAGCTTTTCTGAAGCTAGTTTT +
Preference number: 6 (lower is better)
Translates to: ETYFLMMSVAFS*IQIASFSEASF
Trigger: AAAACTAGCTTCAGAAAAGCTGGCTATTTGGATTCAGCTGAAAGCGACCGACATCATCAGGAAGTATGTCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS CCA 72 bp ACAGTTACTTCAGGTTCAGGTGGTTCAACTACTGCCTaGACTGAGAAACCAGAATCCAAATTTGTCTCAGAA +
Preference number: 6 (lower is better)
Translates to: TVTSGSGGSTTA*TEKPESKFVSE
Trigger: TTCTGAGACAAATTTGGATTCTGGTTTCTCAGTCCAGGCAGTAGTTGAACCACCTGAACCTGAAGTAACTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS CCA 72 bp TGTGGAACTCAAGCTTCTCAGGTCATATTCTCTCACTaGAAGAAGTCTCTTCCTTCTCCGGAAGTAAGTTTT +
Preference number: 6 (lower is better)
Translates to: CGTQASQVIFSH*KKSLPSPEVSF
Trigger: AAAACTTACTTCCGGAGAAGGAAGAGACTTCTTCCAGTGAGAGAATATGACCTGAGAAGCTTGAGTTCCACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS CAA 72 bp TCGGAATCAAATGTCAACTCAGAACTGGAGCAGCCATaGCTCTTAACTTCCATGTCGACATTTAACTCATCG +
Preference number: 6 (lower is better)
Translates to: SESNVNSELEQP*LLTSMSTFNSS
Trigger: CGATGAGTTAAATGTCGACATGGAAGTTAAGAGCAATGGCTGCTCCAGTTCTGAGTTGACATTTGATTCCGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS CAA 72 bp ATTGCCATAAAAGATGTTGAAACCAGGTTTTGTCTTTaGGCACTATCGTCTCCTGCATTGGGCTTTGGGTCA +
Preference number: 6 (lower is better)
Translates to: IAIKDVETRFCL*ALSSPALGFGS
Trigger: TGACCCAAAGCCCAATGCAGGAGACGATAGTGCCAAAAGACAAAACCTGGTTTCAACATCTTTTATGGCAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS CAA 90 bp AGAGGGGAATCGGAATCAAATGTCAACTCAGAACTGGAGCAGCCATaGCTCTTAACTTCCATGTCGACATTTAACTCATCGAGATTTACT +
Preference number: 6 (lower is better)
Translates to: RGESESNVNSELEQP*LLTSMSTFNSSRFT
Trigger: AGTAAATCTCGATGAGTTAAATGTCGACATGGAAGTTAAGAGCAATGGCTGCTCCAGTTCTGAGTTGACATTTGATTCCGATTCCCCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS CAA 90 bp TTTCTTGGTCTCAGAGCCACCATCATAGTAACTATAGAAATAACCTaGACATGCCTGTGTGTTTGTCTTCACATCATCTTCTCTCCCCTG +
Preference number: 6 (lower is better)
Translates to: FLGLRATIIVTIEIT*TCLCVCLHIIFSPL
Trigger: CAGGGGAGAGAAGATGATGTGAAGACAAACACACAGGCATGTCAAGGTTATTTCTATAGTTACTATGATGGTGGCTCTGAGACCAAGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS CCA 72 bp TGCAACCTCTTCTCCTTCCCCGTACATTGGGTTTGGTaGATATTCATACTTAGTTACTCTCAAGTCAAAAGT +
Preference number: 6 (lower is better)
Translates to: CNLFSFPVHWVW*IFILSYSQVKS
Trigger: ACTTTTGACTTGAGAGTAACTAAGTATGAATATCCACCAAACCCAATGTACGGGGAAGGAGAAGAGGTTGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS CCA 72 bp ATCATCTTCTGCAACCTCTTCTCCTTCCCCGTACATTaGGTTTGGTGGATATTCATACTTAGTTACTCTCAA +
Preference number: 6 (lower is better)
Translates to: IIFCNLFSFPVH*VWWIFILSYSQ
Trigger: TTGAGAGTAACTAAGTATGAATATCCACCAAACCCAATGTACGGGGAAGGAGAAGAGGTTGCAGAAGATGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS CAA 72 bp AGTAACTATAGAAATAACCTTGACATGCCTGTGTGTTaGTCTTCACATCATCTTCTCTCCCCTGAGGACATG +
Preference number: 6 (lower is better)
Translates to: SNYRNNLDMPVC*SSHHLLSPEDM
Trigger: CATGTCCTCAGGGGAGAGAAGATGATGTGAAGACAAACACACAGGCATGTCAAGGTTATTTCTATAGTTACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS CAA 90 bp CAGATGGAACTGTCACAAACTGAACAGGATCGTCAGAATCATAAGTaGGTTCAAAGTCAACTAGCTTGTAGCTCTTATCTTCCAGGTAAA +
Preference number: 6 (lower is better)
Translates to: QMELSQTEQDRQNHK*VQSQLACSSYLPGK
Trigger: TTTACCTGGAAGATAAGAGCTACAAGCTAGTTGACTTTGAACCAACTTATGATTCTGACGATCCTGTTCAGTTTGTGACAGTTCCATCTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS TCA 72 bp ACAGCAGAATTACATGCTACTTCAGAACAACATGGCTaGAAGTTCTCATTTTCTAGGTCATCAGGATTCTCC +
Preference number: 6 (lower is better)
Translates to: TAELHATSEQHG*KFSFSRSSGFS
Trigger: GGAGAATCCTGATGACCTAGAAAATGAGAACTTTCAGCCATGTTGTTCTGAAGTAGCATGTAATTCTGCTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS TCA 72 bp CTTCTGGCTATCATGGTGGAAACACTTCCTCTTTGGTaGGTCCTCTTCTTGTTCTGTAATTTTCCTTTTCTT +
Preference number: 6 (lower is better)
Translates to: LLAIMVETLPLW*VLFLFCNFPFL
Trigger: AAGAAAAGGAAAATTACAGAACAAGAAGAGGACTCACCAAAGAGGAAGTGTTTCCACCATGATAGCCAGAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS TCA 72 bp GTTTTTCAGTCATTGTCCGAGGAAAAACATCAAACTTaGAAGTTGGTTGAGAGCCACCATATTCATCATCAC +
Preference number: 6 (lower is better)
Translates to: VFQSLSEEKHQT*KLVESHHIHHH
Trigger: GTGATGATGAATATGGTGGCTCTCAACCAACTTTCAAGTTTGATGTTTTTCCTCGGACAATGACTGAAAAAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS TCA 72 bp ACCAGTGTCTCCAACTTTACCTTTAACATGTTGAATTaGTGTGGTGTTCTGATTAAGGTCAGACCTAATGGT +
Preference number: 6 (lower is better)
Translates to: TSVSNFTFNMLN*CGVLIKVRPNG
Trigger: ACCATTAGGTCTGACCTTAATCAGAACACCACATCAATTCAACATGTTAAAGGTAAAGTTGGAGACACTGGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS CAA 72 bp CTGTCACAAACTGAACAGGATCGTCAGAATCATAAGTaGGTTCAAAGTCAACTAGCTTGTAGCTCTTATCTT +
Preference number: 6 (lower is better)
Translates to: LSQTEQDRQNHK*VQSQLACSSYL
Trigger: AAGATAAGAGCTACAAGCTAGTTGACTTTGAACCAACTTATGATTCTGACGATCCTGTTCAGTTTGTGACAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS GCA 72 bp AAGTTCTCATTTTCTAGGTCATCAGGATTCTCCTTTTaGAAGTTTACTTCTTTGATAGACACAGCCTCTACA +
Preference number: 6 (lower is better)
Translates to: KFSFSRSSGFSF*KFTSLIDTAST
Trigger: TGTAGAGGCTGTGTCTATCAAAGAAGTAAACTTGCAAAAGGAGAATCCTGATGACCTAGAAAATGAGAACTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS CAA 72 bp GAAACCAGAATCCAAATTTGTCTCAGAACATGTATCTaGGCTGTTATCTTCCAAGGACACTTGGTCATTATT +
Preference number: 6 (lower is better)
Translates to: ETRIQICLRTCI*AVIFQGHLVII
Trigger: AATAATGACCAAGTGTCCTTGGAAGATAACAGCCAAGATACATGTTCTGAGACAAATTTGGATTCTGGTTTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS CCA 72 bp AAACCAGAATCCAAATTTGTCTCAGAACATGTATCTTaGCTGTTATCTTCCAAGGACACTTGGTCATTATTA +
Preference number: 6 (lower is better)
Translates to: KPESKFVSEHVS*LLSSKDTWSLL
Trigger: TAATAATGACCAAGTGTCCTTGGAAGATAACAGCCAAGATACATGTTCTGAGACAAATTTGGATTCTGGTTT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2
CDS CAA 72 bp AGAACATGTATCTTGGCTGTTATCTTCCAAGGACACTaGGTCATTATTACCAAGACTTATTTGTTTAAGAGC +
Preference number: 6 (lower is better)
Translates to: RTCILAVIFQGH*VIITKTYLFKS
Trigger: GCTCTTAAACAAATAAGTCTTGGTAATAATGACCAAGTGTCCTTGGAAGATAACAGCCAAGATACATGTTCT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029025.9
ENSMUST00000114132.8
ENSMUST00000239483.2