Pregenerated sensors for ZCCHC9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021621Ensembl transcript IDs: ENSMUST00000022121.13, ENSMUST00000070886.9
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCTCTTAGGCACAGTACTCTGGATGCTGGAGCACGGTTATTAGTGTaGAGCCAACCTGGGCTACATAGAATCTGCTTCAAATACAGACAG | + |
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Preference number: 1 (lower is better) Translates to: ALRHSTLDAGARLLV*SQPGLHRICFKYRQ Trigger: CTGTCTGTATTTGAAGCAGATTCTATGTAGCCCAGGTTGGCTTCACACTAATAACCGTGCTCCAGCATCCAGAGTACTGTGCCTAAGAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022121.13 ENSMUST00000070886.9 |
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| 3UTR-3UTR GCA 90 bp | CCATCTGTAAAATATGCTCTTAGGCACAGTACTCTGGATGCTGGAGCACGGTTACTTTGCCTCCACAGTTaGCCAGCTTCAATCGCTAAA | + |
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Preference number: 2 (lower is better) Translates to: PSVKYALRHSTLDAGARLLCLHS*PASIAK Trigger: TTTAGCGATTGAAGCTGGGCAACTGTGGAGGCAAAG...TAACCGTGCTCCAGCATCCAGAGTACTGTGCCTAAGAGCATATTTTACAGATGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022121.13 ENSMUST00000070886.9 |
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| 3UTR-3UTR TCA 90 bp | CCATCTGTAAAATATGCTCTTAGGCACAGTACTCTGGATGCTGGAGCACGGTTATCAATCGCTAAAGGCTaGGTTTGGAAAGTAACCTTG | + |
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Preference number: 2 (lower is better) Translates to: PSVKYALRHSTLDAGARLSIAKG*VWKVTL Trigger: CAAGGTTACTTTCCAAACTCAGCCTTTAGCGATTGA...TAACCGTGCTCCAGCATCCAGAGTACTGTGCCTAAGAGCATATTTTACAGATGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022121.13 ENSMUST00000070886.9 |
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| 3UTR TCA 72 bp | CACAGTACTCTGGATGCTGGAGCACGGTTATTAGTGTaGAGCCAACCTGGGCTACATAGAATCTGCTTCAAA | + |
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Preference number: 3 (lower is better) Translates to: HSTLDAGARLLV*SQPGLHRICFK Trigger: TTTGAAGCAGATTCTATGTAGCCCAGGTTGGCTTCACACTAATAACCGTGCTCCAGCATCCAGAGTACTGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022121.13 ENSMUST00000070886.9 |
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| CDS-3UTR GCA 90 bp | AGAGTGGTGTCTATAACACAGCTTTGCCTCCACAGTTGCCCAGCTTCAATCGCTTGCACTCATACCCTTTaGCCAGCGACCAACCGTGAT | + |
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Preference number: 4 (lower is better) Translates to: RVVSITQLCLHSCPASIACTHTL*PATNRD Trigger: ATCACGGTTGGTCGCTGGGCAAAGGGTATGAGTGCA...AGCGATTGAAGCTGGGCAACTGTGGAGGCAAAGCTGTGTTATAGACACCACTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022121.13 ENSMUST00000070886.9 |
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| CDS-3UTR CCA 90 bp | CAACCTGTACGCCTTGATAGATTGATTGTAGGCAAGCTACCAAGGTCAGAGTGGTCTTCCCTCACTTCCTaGCTGTCAGCTGCTATCAGC | + |
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Preference number: 4 (lower is better) Translates to: QPVRLDRLIVGKLPRSEWSSLTS*LSAAIS Trigger: GCTGATAGCAGCTGACAGCCAGGAAGTGAGGGAAGA...CCACTCTGACCTTGGTAGCTTGCCTACAATCAATCTATCAAGGCGTACAGGTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022121.13 |
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| CDS-3UTR GCA 90 bp | GCCAACCTGGGCTACATAGAATCTGCTTCAAATACAGACAGACACACAGGCACAGGTAACAAATGCCGGTaGCCATGTCCTGACTCTCTA | + |
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Preference number: 4 (lower is better) Translates to: ANLGYIESASNTDRHTGTGNKCR*PCPDSL Trigger: TAGAGAGTCAGGACATGGGCACCGGCATTTGTTACC...TGTGCCTGTGTGTCTGTCTGTATTTGAAGCAGATTCTATGTAGCCCAGGTTGGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022121.13 ENSMUST00000070886.9 |
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| CDS-3UTR GCA 90 bp | CACAGAGAGATAGATAGACCACACACACACACACACACACACACACACACACACGGTAACAAATGCCGGTaGCCATGTCCTGACTCTCTA | + |
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Preference number: 4 (lower is better) Translates to: HREIDRPHTHTHTHTHTHGNKCR*PCPDSL Trigger: TAGAGAGTCAGGACATGGGCACCGGCATTTGTTACC...GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTCTATCTATCTCTCTGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022121.13 ENSMUST00000070886.9 |
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| CDS-3UTR TCA 90 bp | AGAGTGGTGTCTATAACACAGCTTTGCCTCCACAGTTGCCCAGCTTCAATCGCTATTGTGAAGTACCTGTaGGTTCTGCTTCAGGTACTC | + |
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Preference number: 4 (lower is better) Translates to: RVVSITQLCLHSCPASIAIVKYL*VLLQVL Trigger: GAGTACCTGAAGCAGAACTCACAGGTACTTCACAAT...AGCGATTGAAGCTGGGCAACTGTGGAGGCAAAGCTGTGTTATAGACACCACTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022121.13 |
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| CDS-3UTR GCA 90 bp | AGAGTGGTGTCTATAACACAGCTTTGCCTCCACAGTTGCCCAGCTTCAATCGCTATGGAAACACACCATTaGATTCTTCTTTGCCGCCTG | + |
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Preference number: 4 (lower is better) Translates to: RVVSITQLCLHSCPASIAMETHH*ILLCRL Trigger: CAGGCGGCAAAGAAGAATGCAATGGTGTGTTTCCAT...AGCGATTGAAGCTGGGCAACTGTGGAGGCAAAGCTGTGTTATAGACACCACTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022121.13 |
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| CDS-3UTR TCA 90 bp | GTACGCCTTGATAGATTGATTGTAGGCAAGCTACCAAGGTCAGAGTGGTGTCTAATCAGCTGTCCATTGTaGAGTACCTGTGAGTTCTGC | + |
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Preference number: 4 (lower is better) Translates to: VRLDRLIVGKLPRSEWCLISCPL*STCEFC Trigger: GCAGAACTCACAGGTACTTCACAATGGACAGCTGAT...TAGACACCACTCTGACCTTGGTAGCTTGCCTACAATCAATCTATCAAGGCGTAC 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022121.13 |
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| CDS-3UTR CCA 90 bp | CAACCTGTACGCCTTGATAGATTGATTGTAGGCAAGCTACCAAGGTCAGAGTGGACACTGCTTACGATTTaGAAGGCTTTGGTCTGCTCT | + |
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Preference number: 4 (lower is better) Translates to: QPVRLDRLIVGKLPRSEWTLLTI*KALVCS Trigger: AGAGCAGACCAAAGCCTTCCAAATCGTAAGCAGTGT...CCACTCTGACCTTGGTAGCTTGCCTACAATCAATCTATCAAGGCGTACAGGTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022121.13 |
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| CDS-3UTR CCA 90 bp | CACAGAGAGATAGATAGACCACACACACACACACACACACACACACACACACACCAGCATAGACTCCTTTaGTATTATCAGGGCAGGATC | + |
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Preference number: 4 (lower is better) Translates to: HREIDRPHTHTHTHTHTHQHRLL*YYQGRI Trigger: GATCCTGCCCTGATAATACCAAAGGAGTCTATGCTG...GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTCTATCTATCTCTCTGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022121.13 ENSMUST00000070886.9 |
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| CDS-3UTR TCA 90 bp | GGTCAGAGTGGTGTCTATAACACAGCTTTGCCTCCACAGTTGCCCAGCTTCAATTTTTTGCGTTTTGCTTaGGGTGAGTCATTTCTAAGG | + |
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Preference number: 4 (lower is better) Translates to: GQSGVYNTALPPQLPSFNFLRFA*GESFLR Trigger: CCTTAGAAATGACTCACCTCAAGCAAAACGCAAAAA...ATTGAAGCTGGGCAACTGTGGAGGCAAAGCTGTGTTATAGACACCACTCTGACC 46% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000022121.13 |
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| CDS-3UTR GCA 90 bp | CCATCTGTAAAATATGCTCTTAGGCACAGTACTCTGGATGCTGGAGCACGGTTAAGTACCTGTGAGTTCTaGTTCAGGTACTCCATGAAG | + |
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Preference number: 4 (lower is better) Translates to: PSVKYALRHSTLDAGARLSTCEF*FRYSMK Trigger: CTTCATGGAGTACCTGAAGCAGAACTCACAGGTACT...TAACCGTGCTCCAGCATCCAGAGTACTGTGCCTAAGAGCATATTTTACAGATGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022121.13 |
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| CDS-3UTR CCA 90 bp | GTACGCCTTGATAGATTGATTGTAGGCAAGCTACCAAGGTCAGAGTGGTGTCTACCAGGTTGTCGACAATaGAAACACACCATTGCATTC | + |
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Preference number: 4 (lower is better) Translates to: VRLDRLIVGKLPRSEWCLPGCRQ*KHTIAF Trigger: GAATGCAATGGTGTGTTTCCATTGTCGACAACCTGG...TAGACACCACTCTGACCTTGGTAGCTTGCCTACAATCAATCTATCAAGGCGTAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022121.13 |
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| 3UTR CAA 72 bp | GAGAGTGTAATTAATCAACCTGTACGCCTTGATAGATaGATTGTAGGCAAGCTACCAAGGTCAGAGTGGTGT | + |
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Preference number: 4 (lower is better) Translates to: ESVINQPVRLDR*IVGKLPRSEWC Trigger: ACACCACTCTGACCTTGGTAGCTTGCCTACAATCAATCTATCAAGGCGTACAGGTTGATTAATTACACTCTC 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022121.13 ENSMUST00000070886.9 |
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| CDS-3UTR CAA 90 bp | GTGTCTATAACACAGCTTTGCCTCCACAGTTGCCCAGCTTCAATCGCTAAAGGCTGTCCTCCCATGATGTaGCTGACAGGGGTCGCTTAC | + |
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Preference number: 5 (lower is better) Translates to: VSITQLCLHSCPASIAKGCPPMM*LTGVAY Trigger: GTAAGCGACCCCTGTCAGCAACATCATGGGAGGACA...GCCTTTAGCGATTGAAGCTGGGCAACTGTGGAGGCAAAGCTGTGTTATAGACAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022121.13 |
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| CDS CCA 90 bp | GTCATTTCTAAGGGGCAGCCTACTGCTTTGACACTGCTTACGATTTaGAAGGCTTTGGTCTGCTCTCTCCACAGACCCCTTCTTCATGTC | + |
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Preference number: 5 (lower is better) Translates to: VISKGQPTALTLLTI*KALVCSLHRPLLHV Trigger: GACATGAAGAAGGGGTCTGTGGAGAGAGCAGACCAAAGCCTTCCAAATCGTAAGCAGTGTCAAAGCAGTAGGCTGCCCCTTAGAAATGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022121.13 |
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| CDS-3UTR CAA 90 bp | CAACCTGTACGCCTTGATAGATTGATTGTAGGCAAGCTACCAAGGTCAGAGTGGGACACTGCTTACGATTaGGAAGGCTTTGGTCTGCTC | + |
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Preference number: 5 (lower is better) Translates to: QPVRLDRLIVGKLPRSEWDTAYD*EGFGLL Trigger: GAGCAGACCAAAGCCTTCCAAATCGTAAGCAGTGTC...CCACTCTGACCTTGGTAGCTTGCCTACAATCAATCTATCAAGGCGTACAGGTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022121.13 |
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| CDS-3UTR CAA 90 bp | GTACGCCTTGATAGATTGATTGTAGGCAAGCTACCAAGGTCAGAGTGGTGTCTAACGATTTGGAAGGCTTaGGTCTGCTCTCTCCACAGA | + |
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Preference number: 5 (lower is better) Translates to: VRLDRLIVGKLPRSEWCLTIWKA*VCSLHR Trigger: TCTGTGGAGAGAGCAGACCAAAGCCTTCCAAATCGT...TAGACACCACTCTGACCTTGGTAGCTTGCCTACAATCAATCTATCAAGGCGTAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022121.13 |
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| CDS-3UTR CAA 90 bp | AAGGTCAGAGTGGTGTCTATAACACAGCTTTGCCTCCACAGTTGCCCAGCTTCAAATGGAAACACACCATaGCATTCTTCTTTGCCGCCT | + |
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Preference number: 5 (lower is better) Translates to: KVRVVSITQLCLHSCPASNGNTP*HSSLPP Trigger: AGGCGGCAAAGAAGAATGCAATGGTGTGTTTCCATT...TGAAGCTGGGCAACTGTGGAGGCAAAGCTGTGTTATAGACACCACTCTGACCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022121.13 |
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| CDS-3UTR CAA 90 bp | CAACCTGTACGCCTTGATAGATTGATTGTAGGCAAGCTACCAAGGTCAGAGTGGTGTTCTTTTTGCGTTTaGCTTGAGGTGAGTCATTTC | + |
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Preference number: 5 (lower is better) Translates to: QPVRLDRLIVGKLPRSEWCSFCV*LEVSHF Trigger: GAAATGACTCACCTCAAGCAAAACGCAAAAAGAACA...CCACTCTGACCTTGGTAGCTTGCCTACAATCAATCTATCAAGGCGTACAGGTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022121.13 |
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| CDS-3UTR CAA 90 bp | CCTGTACGCCTTGATAGATTGATTGTAGGCAAGCTACCAAGGTCAGAGTGGTGTACAACTTTGGGTACTTaGGTTTTAGGTTTCTGCAGT | + |
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Preference number: 5 (lower is better) Translates to: PVRLDRLIVGKLPRSEWCTTLGT*VLGFCS Trigger: ACTGCAGAAACCTAAAACCAAAGTACCCAAAGTTGT...ACACCACTCTGACCTTGGTAGCTTGCCTACAATCAATCTATCAAGGCGTACAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022121.13 ENSMUST00000070886.9 |
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| CDS-3UTR CAA 90 bp | CAACCTGTACGCCTTGATAGATTGATTGTAGGCAAGCTACCAAGGTCAGAGTGGACAACTTTGGGTACTTaGGTTTTAGGTTTCTGCAGT | + |
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Preference number: 5 (lower is better) Translates to: QPVRLDRLIVGKLPRSEWTTLGT*VLGFCS Trigger: ACTGCAGAAACCTAAAACCAAAGTACCCAAAGTTGT...CCACTCTGACCTTGGTAGCTTGCCTACAATCAATCTATCAAGGCGTACAGGTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022121.13 ENSMUST00000070886.9 |
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| CDS GCA 72 bp | CGTGCTCCGTGGACCCACAGCGGTAACAAATGCCGGTaGCCATGTCCTGACTCTCTAGTACAGCTGGACAGT | + |
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Preference number: 6 (lower is better) Translates to: RAPWTHSGNKCR*PCPDSLVQLDS Trigger: ACTGTCCAGCTGTACTAGAGAGTCAGGACATGGGCACCGGCATTTGTTACCGCTGTGGGTCCACGGAGCACG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022121.13 ENSMUST00000070886.9 |
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| CDS GCA 72 bp | ACATCTCGTGCTCCGTGGACCCACAGCGGTAACAAATaGCGGTGCCCATGTCCTGACTCTCTAGTACAGCTG | + |
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Preference number: 6 (lower is better) Translates to: TSRAPWTHSGNK*RCPCPDSLVQL Trigger: CAGCTGTACTAGAGAGTCAGGACATGGGCACCGGCATTTGTTACCGCTGTGGGTCCACGGAGCACGAGATGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022121.13 ENSMUST00000070886.9 |
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| CDS CCA 72 bp | AAGGGGCAGCCTACTGCTTTGACACTGCTTACGATTTaGAAGGCTTTGGTCTGCTCTCTCCACAGACCCCTT | + |
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Preference number: 6 (lower is better) Translates to: KGQPTALTLLTI*KALVCSLHRPL Trigger: AAGGGGTCTGTGGAGAGAGCAGACCAAAGCCTTCCAAATCGTAAGCAGTGTCAAAGCAGTAGGCTGCCCCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022121.13 |
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| CDS GCA 72 bp | GCTTTGACACTGCTTACGATTTGGAAGGCTTTGGTCTaGTCTCTCCACAGACCCCTTCTTCATGTCCTCCCA | + |
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Preference number: 6 (lower is better) Translates to: ALTLLTIWKALV*SLHRPLLHVLP Trigger: TGGGAGGACATGAAGAAGGGGTCTGTGGAGAGAGCAGACCAAAGCCTTCCAAATCGTAAGCAGTGTCAAAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022121.13 |
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| CDS TCA 72 bp | ACTTCCTGGCTGTCAGCTGCTATCAGCTGTCCATTGTaGAGTACCTGTGAGTTCTGCTTCAGGTACTCCATG | + |
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Preference number: 6 (lower is better) Translates to: TSWLSAAISCPL*STCEFCFRYSM Trigger: CATGGAGTACCTGAAGCAGAACTCACAGGTACTTCACAATGGACAGCTGATAGCAGCTGACAGCCAGGAAGT 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022121.13 |
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| CDS CAA 72 bp | CCTACTGCTTTGACACTGCTTACGATTTGGAAGGCTTaGGTCTGCTCTCTCCACAGACCCCTTCTTCATGTC | + |
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Preference number: 6 (lower is better) Translates to: PTALTLLTIWKA*VCSLHRPLLHV Trigger: GACATGAAGAAGGGGTCTGTGGAGAGAGCAGACCAAAGCCTTCCAAATCGTAAGCAGTGTCAAAGCAGTAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022121.13 |
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