Pregenerated sensors for ZCCHC7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035649Ensembl transcript IDs: ENSMUST00000107824.9, ENSMUST00000126968.2, ENSMUST00000142714.8, ENSMUST00000147272.8
Found 113 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CACAGACCTGAACTCTTTGTGGTCTCTGTACAGCCACTCCAGGCATaGCCGGAACTCAGCATTCAATCCCAGCGTCTCATTAACAGGTAC | + |
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Preference number: 1 (lower is better) Translates to: HRPELFVVSVQPLQA*PELSIQSQRLINRY Trigger: GTACCTGTTAATGAGACGCTGGGATTGAATGCTGAGTTCCGGCCATGCCTGGAGTGGCTGTACAGAGACCACAAAGAGTTCAGGTCTGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
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| 3UTR GCA 90 bp | CTGCCATTGCACTCAAGTTTGAGGATGCCTTTCACACCTCCGTCCTaGAAGCCCACACTGCGCACATTTTGTTTGTGTATTTGCTATGTC | + |
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Preference number: 1 (lower is better) Translates to: LPLHSSLRMPFTPPS*KPTLRTFCLCICYV Trigger: GACATAGCAAATACACAAACAAAATGTGCGCAGTGTGGGCTTGCAGGACGGAGGTGTGAAAGGCATCCTCAAACTTGAGTGCAATGGCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
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| 3UTR TCA 90 bp | GATCCACGAGGACAAGTTAGGTTGATGGTATGTATCCCTGTCTCTTaGACTATGGCTGTTAACAGTGCGAACAAAATGTCCCTGCCATTG | + |
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Preference number: 1 (lower is better) Translates to: DPRGQVRLMVCIPVS*TMAVNSANKMSLPL Trigger: CAATGGCAGGGACATTTTGTTCGCACTGTTAACAGCCATAGTTCAAGAGACAGGGATACATACCATCAACCTAACTTGTCCTCGTGGATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
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| 3UTR GCA 90 bp | TGGTGGCGCCTCTTATCTGTCTCTTCTACATGTGGTCTTTTGAACTaGCTTGGAAAGTCTCCATTTTTCTTGAGATCTCTCTGCATAGAC | + |
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Preference number: 1 (lower is better) Translates to: WWRLLSVSSTCGLLN*LGKSPFFLRSLCID Trigger: GTCTATGCAGAGAGATCTCAAGAAAAATGGAGACTTTCCAAGGCAGTTCAAAAGACCACATGTAGAAGAGACAGATAAGAGGCGCCACCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000126968.2 |
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| 3UTR GCA 90 bp | GCATTATTGCTTTCTCAGTACAAACTCTCCAGATGTTTATTATCTTaGTGCAGAAGATGCTTGTCTATATTTTATGGTCAGCAGTTCAGA | + |
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Preference number: 1 (lower is better) Translates to: ALLLSQYKLSRCLLS*CRRCLSIFYGQQFR Trigger: TCTGAACTGCTGACCATAAAATATAGACAAGCATCTTCTGCAGCAAGATAATAAACATCTGGAGAGTTTGTACTGAGAAAGCAATAATGC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142714.8 |
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| 3UTR-3UTR CCA 90 bp | AGTGGGCAGGAGAAAGGGAGAGGTGCATTATTGCTTTCTCAGTACAAACTCTCCCTGCCTCCAGATTTCTaGGCAAGCGTCAGCATGGTG | + |
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Preference number: 2 (lower is better) Translates to: SGQEKGRGALLLSQYKLSLPPDF*ASVSMV Trigger: CACCATGCTGACGCTTGCCCAGAAATCTGGAGGCAG...GGAGAGTTTGTACTGAGAAAGCAATAATGCACCTCTCCCTTTCTCCTGCCCACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142714.8 |
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| 3UTR CAA 90 bp | ACCTCCGTCCTGCAAGCCCACACTGCGCACATTTTGTTTGTGTATTaGCTATGTCCTCTCCTCCACCTCCTCCAGAATTCAATGGTGACA | + |
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Preference number: 2 (lower is better) Translates to: TSVLQAHTAHILFVY*LCPLLHLLQNSMVT Trigger: TGTCACCATTGAATTCTGGAGGAGGTGGAGGAGAGGACATAGCAAATACACAAACAAAATGTGCGCAGTGTGGGCTTGCAGGACGGAGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
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| 3UTR CAA 90 bp | CCTTTCACACCTCCGTCCTGCAAGCCCACACTGCGCACATTTTGTTaGTGTATTTGCTATGTCCTCTCCTCCACCTCCTCCAGAATTCAA | + |
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Preference number: 2 (lower is better) Translates to: PFTPPSCKPTLRTFC*CICYVLSSTSSRIQ Trigger: TTGAATTCTGGAGGAGGTGGAGGAGAGGACATAGCAAATACACAAACAAAATGTGCGCAGTGTGGGCTTGCAGGACGGAGGTGTGAAAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
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| 3UTR-3UTR CCA 90 bp | GTGGAGGGACTTAGAAGGCTTCTGGTTGTTAGCGCAGCCAGAGGCGTTGGGTTTTGTCTCTTCTACATGTaGTCTTTTGAACTGCCTTGG | + |
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Preference number: 2 (lower is better) Translates to: VEGLRRLLVVSAARGVGFCLFYM*SFELPW Trigger: CCAAGGCAGTTCAAAAGACCACATGTAGAAGAGACA...AAACCCAACGCCTCTGGCTGCGCTAACAACCAGAAGCCTTCTAAGTCCCTCCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000126968.2 |
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| 3UTR-3UTR CCA 90 bp | CACACTGCGCACATTTTGTTTGTGTATTTGCTATGTCCTCTCCTCCACCTCCTCGACCTGAACTCTTTGTaGTCTCTGTACAGCCACTCC | + |
|
Preference number: 2 (lower is better) Translates to: HTAHILFVYLLCPLLHLLDLNSL*SLYSHS Trigger: GGAGTGGCTGTACAGAGACCACAAAGAGTTCAGGTC...GAGGAGGTGGAGGAGAGGACATAGCAAATACACAAACAAAATGTGCGCAGTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
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| 3UTR-3UTR TCA 90 bp | TTATCAGGTTTAGGCTATAAGGGCTTTACCATTATTATGTTACCAAAGAGCTGCGAGATGTCCTCTCTCTaGGCAGAGGCAGCAGGCCCG | + |
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Preference number: 2 (lower is better) Translates to: LSGLGYKGFTIIMLPKSCEMSSL*AEAAGP Trigger: CGGGCCTGCTGCCTCTGCTCAGAGAGAGGACATCTC...GCAGCTCTTTGGTAACATAATAATGGTAAAGCCCTTATAGCCTAAACCTGATAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142714.8 |
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| 3UTR-3UTR TCA 90 bp | AGTGGGCAGGAGAAAGGGAGAGGTGCATTATTGCTTTCTCAGTACAAACTCTCCTTACTCACCGTTAGGTaGTACTGCCTCCAGATTTCT | + |
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Preference number: 2 (lower is better) Translates to: SGQEKGRGALLLSQYKLSLLTVR*YCLQIS Trigger: AGAAATCTGGAGGCAGTATCACCTAACGGTGAGTAA...GGAGAGTTTGTACTGAGAAAGCAATAATGCACCTCTCCCTTTCTCCTGCCCACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142714.8 |
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| 3UTR-3UTR CCA 90 bp | AGCATGGTGGCCTATCATATCACATCGGTCACATCGTTTTCTCCAGGACAATCTTGTGGTTGGAAGACATaGGCAAAGAGCAGTCTAAGC | + |
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Preference number: 2 (lower is better) Translates to: SMVAYHITSVTSFSPGQSCGWKT*AKSSLS Trigger: GCTTAGACTGCTCTTTGCCCATGTCTTCCAACCACA...AGATTGTCCTGGAGAAAACGATGTGACCGATGTGATATGATAGGCCACCATGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142714.8 |
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| 3UTR-3UTR CCA 90 bp | AAGCGTCAGCATGGTGGCCTATCATATCACATCGGTCACATCGTTTTCTCCAGGTGTTATTATCTATCTTaGCCTCGATGTCTTTGTCAC | + |
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Preference number: 2 (lower is better) Translates to: KRQHGGLSYHIGHIVFSRCYYLS*PRCLCH Trigger: GTGACAAAGACATCGAGGCCAAGATAGATAATAACA...CCTGGAGAAAACGATGTGACCGATGTGATATGATAGGCCACCATGCTGACGCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142714.8 |
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| 3UTR-3UTR TCA 90 bp | GAATTCAATGGTGACAGCTTCATTTTACATGCTGTTCTGTACAGAGAGAGATTCCTGTGGACACAGACCTaGACTCTTTGTGGTCTCTGT | + |
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Preference number: 2 (lower is better) Translates to: EFNGDSFILHAVLYRERFLWTQT*TLCGLC Trigger: ACAGAGACCACAAAGAGTTCAGGTCTGTGTCCACAG...GAATCTCTCTCTGTACAGAACAGCATGTAAAATGAAGCTGTCACCATTGAATTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
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| 3UTR-3UTR TCA 90 bp | AGTGGGCAGGAGAAAGGGAGAGGTGCATTATTGCTTTCTCAGTACAAACTCTCCGTTCCACCTTCCAGATaGTCTGTTATTATCTATCTT | + |
|
Preference number: 2 (lower is better) Translates to: SGQEKGRGALLLSQYKLSVPPSR*SVIIYL Trigger: AAGATAGATAATAACAGATCATCTGGAAGGTGGAAC...GGAGAGTTTGTACTGAGAAAGCAATAATGCACCTCTCCCTTTCTCCTGCCCACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142714.8 |
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| 3UTR-3UTR CCA 90 bp | TTATCAGGTTTAGGCTATAAGGGCTTTACCATTATTATGTTACCAAAGAGCTGCGGGCAAGCGTCAGCATaGTGGCCTATCATATCACAT | + |
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Preference number: 2 (lower is better) Translates to: LSGLGYKGFTIIMLPKSCGQASA*WPIISH Trigger: ATGTGATATGATAGGCCACCATGCTGACGCTTGCCC...GCAGCTCTTTGGTAACATAATAATGGTAAAGCCCTTATAGCCTAAACCTGATAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142714.8 |
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| 3UTR-3UTR CCA 90 bp | CTATACAGAGACTCTGAGACCTTGAGAGATACAAGAATAATTCTGTTCTTATCAATAAAGAGCAGGCAGTaGGCAGGAGAAAGGGAGAGG | + |
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Preference number: 2 (lower is better) Translates to: LYRDSETLRDTRIILFLSIKSRQ*AGERER Trigger: CCTCTCCCTTTCTCCTGCCCACTGCCTGCTCTTTAT...TGATAAGAACAGAATTATTCTTGTATCTCTCAAGGTCTCAGAGTCTCTGTATAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142714.8 |
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| 3UTR-3UTR TCA 90 bp | TCCAATGAGCTTTTAAGTCCTCAAACATTGGAGATAAAATCATCTGATGAGCTTCTGTGGACACAGACCTaGACTCTTTGTGGTCTCTGT | + |
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Preference number: 2 (lower is better) Translates to: SNELLSPQTLEIKSSDELLWTQT*TLCGLC Trigger: ACAGAGACCACAAAGAGTTCAGGTCTGTGTCCACAG...AAGCTCATCAGATGATTTTATCTCCAATGTTTGAGGACTTAAAAGCTCATTGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
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| 3UTR CAA 90 bp | AAAGTAACGAGTACTGCCACACCACTATACAGAGACTCTGAGACCTaGAGAGATACAAGAATAATTCTGTTCTTATCAGGTTTAGGCTAT | + |
|
Preference number: 2 (lower is better) Translates to: KVTSTATPLYRDSET*RDTRIILFLSGLGY Trigger: ATAGCCTAAACCTGATAAGAACAGAATTATTCTTGTATCTCTCAAGGTCTCAGAGTCTCTGTATAGTGGTGTGGCAGTACTCGTTACTTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142714.8 |
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| 3UTR-3UTR TCA 90 bp | GGGAGAGGTGCATTATTGCTTTCTCAGTACAAACTCTCCAGATGTTTATTATCTGACATTTTTGTTGACTaGATAGTATCGGTTGTTCCA | + |
|
Preference number: 2 (lower is better) Translates to: GRGALLLSQYKLSRCLLSDIFVD*IVSVVP Trigger: TGGAACAACCGATACTATTCAGTCAACAAAAATGTC...AGATAATAAACATCTGGAGAGTTTGTACTGAGAAAGCAATAATGCACCTCTCCC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000142714.8 |
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| 3UTR-3UTR TCA 90 bp | TTATCAGGTTTAGGCTATAAGGGCTTTACCATTATTATGTTACCAAAGAGCTGCGAAAGTGATAATGGATaGTATTGTGGGCTGTATGCT | + |
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Preference number: 2 (lower is better) Translates to: LSGLGYKGFTIIMLPKSCESDNG*YCGLYA Trigger: AGCATACAGCCCACAATATCATCCATTATCACTTTC...GCAGCTCTTTGGTAACATAATAATGGTAAAGCCCTTATAGCCTAAACCTGATAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142714.8 |
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| 3UTR-3UTR CCA 90 bp | CTATACAGAGACTCTGAGACCTTGAGAGATACAAGAATAATTCTGTTCTTATCAGATGAGTCTGCCTGTTaGCTCACTTTATATCTCTGT | + |
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Preference number: 2 (lower is better) Translates to: LYRDSETLRDTRIILFLSDESAC*LTLYLC Trigger: ACAGAGATATAAAGTGAGCCAACAGGCAGACTCATC...TGATAAGAACAGAATTATTCTTGTATCTCTCAAGGTCTCAGAGTCTCTGTATAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142714.8 |
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| 3UTR CAA 90 bp | TGCATTATTGCTTTCTCAGTACAAACTCTCCAGATGTTTATTATCTaGCTGCAGAAGATGCTTGTCTATATTTTATGGTCAGCAGTTCAG | + |
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Preference number: 2 (lower is better) Translates to: CIIAFSVQTLQMFII*LQKMLVYILWSAVQ Trigger: CTGAACTGCTGACCATAAAATATAGACAAGCATCTTCTGCAGCAAGATAATAAACATCTGGAGAGTTTGTACTGAGAAAGCAATAATGCA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142714.8 |
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| 3UTR-3UTR GCA 90 bp | TTATCAGGTTTAGGCTATAAGGGCTTTACCATTATTATGTTACCAAAGAGCTGCAGATGTTTATTATCTTaGTGCAGAAGATGCTTGTCT | + |
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Preference number: 2 (lower is better) Translates to: LSGLGYKGFTIIMLPKSCRCLLS*CRRCLS Trigger: AGACAAGCATCTTCTGCAGCAAGATAATAAACATCT...GCAGCTCTTTGGTAACATAATAATGGTAAAGCCCTTATAGCCTAAACCTGATAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142714.8 |
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| 3UTR CCA 72 bp | GAACTCTTTGTGGTCTCTGTACAGCCACTCCAGGCATaGCCGGAACTCAGCATTCAATCCCAGCGTCTCATT | + |
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Preference number: 3 (lower is better) Translates to: ELFVVSVQPLQA*PELSIQSQRLI Trigger: AATGAGACGCTGGGATTGAATGCTGAGTTCCGGCCATGCCTGGAGTGGCTGTACAGAGACCACAAAGAGTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
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| 3UTR GCA 72 bp | GGATGCCTTTCACACCTCCGTCCTGCAAGCCCACACTaGGCACATTTTGTTTGTGTATTTGCTATGTCCTCT | + |
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Preference number: 3 (lower is better) Translates to: GCLSHLRPASPH*AHFVCVFAMSS Trigger: AGAGGACATAGCAAATACACAAACAAAATGTGCGCAGTGTGGGCTTGCAGGACGGAGGTGTGAAAGGCATCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
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| 3UTR GCA 72 bp | CACTCAAGTTTGAGGATGCCTTTCACACCTCCGTCCTaGAAGCCCACACTGCGCACATTTTGTTTGTGTATT | + |
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Preference number: 3 (lower is better) Translates to: HSSLRMPFTPPS*KPTLRTFCLCI Trigger: AATACACAAACAAAATGTGCGCAGTGTGGGCTTGCAGGACGGAGGTGTGAAAGGCATCCTCAAACTTGAGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
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| 3UTR TCA 72 bp | ATGCTGTTCTGTACAGAGAGAGATTCCAACAGCCTCTaGTGCAAGCAAAGCCGGGCTTGGATTTTCATTGAT | + |
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Preference number: 3 (lower is better) Translates to: MLFCTERDSNSL*CKQSRAWIFID Trigger: ATCAATGAAAATCCAAGCCCGGCTTTGCTTGCATCAGAGGCTGTTGGAATCTCTCTCTGTACAGAACAGCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
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| 3UTR-3UTR CAA 90 bp | TGGTGGCGCCTCTTATCTGTCTCTTCTACATGTGGTCTTTTGAACTGCCTTGGAAAGTCTCCATTTTTCTaGAGATCTCTCTGCATAGAC | + |
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Preference number: 3 (lower is better) Translates to: WWRLLSVSSTCGLLNCLGKSPFF*RSLCID Trigger: GTCTATGCAGAGAGATCTCAAGAAAAATGGAGACTT...TCCAAGGCAGTTCAAAAGACCACATGTAGAAGAGACAGATAAGAGGCGCCACCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000126968.2 |
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| 3UTR-3UTR CAA 90 bp | AGTGGGCAGGAGAAAGGGAGAGGTGCATTATTGCTTTCTCAGTACAAACTCTCCTGCTGCAGAAGATGCTaGTCTATATTTTATGGTCAG | + |
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Preference number: 3 (lower is better) Translates to: SGQEKGRGALLLSQYKLSCCRRC*SIFYGQ Trigger: CTGACCATAAAATATAGACAAGCATCTTCTGCAGCA...GGAGAGTTTGTACTGAGAAAGCAATAATGCACCTCTCCCTTTCTCCTGCCCACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142714.8 |
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| 3UTR-3UTR CAA 90 bp | GCACATTTTGTTTGTGTATTTGCTATGTCCTCTCCTCCACCTCCTCCAGAATTCTTTTCTACCTCAAGTTaGCCTTCCTACCTAGGAACA | + |
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Preference number: 3 (lower is better) Translates to: AHFVCVFAMSSPPPPPEFFSTSS*PSYLGT Trigger: TGTTCCTAGGTAGGAAGGCAAACTTGAGGTAGAAAA...GAATTCTGGAGGAGGTGGAGGAGAGGACATAGCAAATACACAAACAAAATGTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
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| 3UTR-3UTR CAA 90 bp | TATATTTTATGGTCAGCAGTTCAGAGAAGGGTAAATAGGCTGGGTCTTGGGGAATCAAAACATCTGTGGTaGGAAGACATGGGCAAAGAG | + |
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Preference number: 3 (lower is better) Translates to: YILWSAVQRRVNRLGLGESKHLW*EDMGKE Trigger: CTCTTTGCCCATGTCTTCCAACCACAGATGTTTTGA...TTCCCCAAGACCCAGCCTATTTACCCTTCTCTGAACTGCTGACCATAAAATATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000142714.8 |
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| 3UTR-3UTR CAA 90 bp | TTATCAGGTTTAGGCTATAAGGGCTTTACCATTATTATGTTACCAAAGAGCTGCATATACTACTATCCCTaGCACTGTGGCCCGGGCAGA | + |
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Preference number: 3 (lower is better) Translates to: LSGLGYKGFTIIMLPKSCIYYYP*HCGPGR Trigger: TCTGCCCGGGCCACAGTGCAAGGGATAGTAGTATAT...GCAGCTCTTTGGTAACATAATAATGGTAAAGCCCTTATAGCCTAAACCTGATAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142714.8 |
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| 3UTR TCA 72 bp | GGACAAGTTAGGTTGATGGTATGTATCCCTGTCTCTTaGACTATGGCTGTTAACAGTGCGAACAAAATGTCC | + |
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Preference number: 3 (lower is better) Translates to: GQVRLMVCIPVS*TMAVNSANKMS Trigger: GGACATTTTGTTCGCACTGTTAACAGCCATAGTTCAAGAGACAGGGATACATACCATCAACCTAACTTGTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
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| 3UTR TCA 72 bp | GAAGTGTTTAAAAGGATCCACGAGGACAAGTTAGGTTaGTGGTATGTATCCCTGTCTCTTGAACTATGGCTG | + |
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Preference number: 3 (lower is better) Translates to: EVFKRIHEDKLG*WYVSLSLELWL Trigger: CAGCCATAGTTCAAGAGACAGGGATACATACCATCAACCTAACTTGTCCTCGTGGATCCTTTTAAACACTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
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| 3UTR-3UTR CAA 90 bp | CCTCCAGAATTCAATGGTGACAGCTTCATTTTACATGCTGTTCTGTACAGAGAGGGGCTTGGATTTTCATaGATTTTTCCAGTGTTCTTA | + |
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Preference number: 3 (lower is better) Translates to: PPEFNGDSFILHAVLYREGLGFS*IFPVFL Trigger: TAAGAACACTGGAAAAATCAATGAAAATCCAAGCCC...CTCTCTGTACAGAACAGCATGTAAAATGAAGCTGTCACCATTGAATTCTGGAGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
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| 3UTR TCA 72 bp | AGTAACGAGTACTGCCACACCACTATACAGAGACTCTaGGACCTTGAGAGATACAAGAATAATTCTGTTCTT | + |
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Preference number: 3 (lower is better) Translates to: SNEYCHTTIQRL*DLERYKNNSVL Trigger: AAGAACAGAATTATTCTTGTATCTCTCAAGGTCTCAGAGTCTCTGTATAGTGGTGTGGCAGTACTCGTTACT 40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142714.8 |
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| 3UTR-3UTR CAA 90 bp | TCCAATGAGCTTTTAAGTCCTCAAACATTGGAGATAAAATCATCTGATGAGCTTTTTTCTACCTCAAGTTaGCCTTCCTACCTAGGAACA | + |
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Preference number: 3 (lower is better) Translates to: SNELLSPQTLEIKSSDELFSTSS*PSYLGT Trigger: TGTTCCTAGGTAGGAAGGCAAACTTGAGGTAGAAAA...AAGCTCATCAGATGATTTTATCTCCAATGTTTGAGGACTTAAAAGCTCATTGGA 38% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
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| 3UTR-3UTR CAA 90 bp | CTATACAGAGACTCTGAGACCTTGAGAGATACAAGAATAATTCTGTTCTTATCACAGATGTTTATTATCTaGCTGCAGAAGATGCTTGTC | + |
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Preference number: 3 (lower is better) Translates to: LYRDSETLRDTRIILFLSQMFII*LQKMLV Trigger: GACAAGCATCTTCTGCAGCAAGATAATAAACATCTG...TGATAAGAACAGAATTATTCTTGTATCTCTCAAGGTCTCAGAGTCTCTGTATAG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142714.8 |
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| 3UTR GCA 72 bp | AAACTCTCCAGATGTTTATTATCTTGCTGCAGAAGATaGTTGTCTATATTTTATGGTCAGCAGTTCAGAGAA | + |
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Preference number: 3 (lower is better) Translates to: KLSRCLLSCCRR*LSIFYGQQFRE Trigger: TTCTCTGAACTGCTGACCATAAAATATAGACAAGCATCTTCTGCAGCAAGATAATAAACATCTGGAGAGTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142714.8 |
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| CDS-3UTR TCA 90 bp | CCACTCCAGGCATGGCCGGAACTCAGCATTCAATCCCAGCGTCTCATTAACAGGTCCGCTTGCTCTCCCTaGGAAGCCGCTCTTCTCTCA | + |
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Preference number: 4 (lower is better) Translates to: PLQAWPELSIQSQRLINRSACSP*EAALLS Trigger: TGAGAGAAGAGCGGCTTCTCAGGGAGAGCAAGCGGA...CCTGTTAATGAGACGCTGGGATTGAATGCTGAGTTCCGGCCATGCCTGGAGTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
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| 3UTR CAA 72 bp | TGGGATGCATGGTGGAGGGACTTAGAAGGCTTCTGGTaGTTAGCGCAGCCAGAGGCGTTGGGTTTTGAGCCC | + |
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Preference number: 4 (lower is better) Translates to: WDAWWRDLEGFW*LAQPEALGFEP Trigger: GGGCTCAAAACCCAACGCCTCTGGCTGCGCTAACAACCAGAAGCCTTCTAAGTCCCTCCACCATGCATCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000126968.2 |
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| CDS-3UTR CCA 90 bp | GTCTCTGTACAGCCACTCCAGGCATGGCCGGAACTCAGCATTCAATCCCAGCGTCTCTCGGATCACACCTaGCCTCTCTTCAGGTTTAGG | + |
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Preference number: 4 (lower is better) Translates to: VSVQPLQAWPELSIQSQRLSDHT*PLFRFR Trigger: CCTAAACCTGAAGAGAGGCCAGGTGTGATCCGAGAG...ACGCTGGGATTGAATGCTGAGTTCCGGCCATGCCTGGAGTGGCTGTACAGAGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107824.9 |
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| CDS-3UTR GCA 90 bp | GAACAGCCTGTGGACACAGACCTGAACTCTTTGTGGTCTCTGTACAGCCACTCCCCCTCCTGTGCGTCTTaGCTTCTCTACTCCTGGTCT | + |
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Preference number: 4 (lower is better) Translates to: EQPVDTDLNSLWSLYSHSPSCAS*LLYSWS Trigger: AGACCAGGAGTAGAGAAGGCAAGACGCACAGGAGGG...GGAGTGGCTGTACAGAGACCACAAAGAGTTCAGGTCTGTGTCCACAGGCTGTTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
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| CDS-3UTR CCA 90 bp | GAACTCTTTGTGGTCTCTGTACAGCCACTCCAGGCATGGCCGGAACTCAGCATTGAAGTAGCAGGGCTCTaGGTCTTTTCTTCCGCTTGG | + |
|
Preference number: 4 (lower is better) Translates to: ELFVVSVQPLQAWPELSIEVAGL*VFSSAW Trigger: CCAAGCGGAAGAAAAGACCCAGAGCCCTGCTACTTC...AATGCTGAGTTCCGGCCATGCCTGGAGTGGCTGTACAGAGACCACAAAGAGTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107824.9 |
||
| CDS-3UTR CCA 90 bp | CCACTCCAGGCATGGCCGGAACTCAGCATTCAATCCCAGCGTCTCATTAACAGGGGGCAAGCGTCAGCATaGTGGCCTATCATATCACAT | + |
|
Preference number: 4 (lower is better) Translates to: PLQAWPELSIQSQRLINRGQASA*WPIISH Trigger: ATGTGATATGATAGGCCACCATGCTGACGCTTGCCC...CCTGTTAATGAGACGCTGGGATTGAATGCTGAGTTCCGGCCATGCCTGGAGTGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107824.9 |
||
| 3UTR CAA 72 bp | CACACCTCCGTCCTGCAAGCCCACACTGCGCACATTTaGTTTGTGTATTTGCTATGTCCTCTCCTCCACCTC | + |
|
Preference number: 4 (lower is better) Translates to: HTSVLQAHTAHI*FVYLLCPLLHL Trigger: GAGGTGGAGGAGAGGACATAGCAAATACACAAACAAAATGTGCGCAGTGTGGGCTTGCAGGACGGAGGTGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
||
| CDS-3UTR GCA 90 bp | CACCTCCGTCCTGCAAGCCCACACTGCGCACATTTTGTTTGTGTATTTGCTATGCCCTCCTGTGCGTCTTaGCTTCTCTACTCCTGGTCT | + |
|
Preference number: 4 (lower is better) Translates to: HLRPASPHCAHFVCVFAMPSCAS*LLYSWS Trigger: AGACCAGGAGTAGAGAAGGCAAGACGCACAGGAGGG...CATAGCAAATACACAAACAAAATGTGCGCAGTGTGGGCTTGCAGGACGGAGGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
||
| CDS-3UTR TCA 90 bp | GGTTGGAAGACATGGGCAAAGAGCAGTCTAAGCAGTAACGGGCTGGACAGCCATGCCACTTTATTAGAATaGGAAGTAGCAGGGCTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: GWKTWAKSSLSSNGLDSHATLLE*EVAGLW Trigger: CCAGAGCCCTGCTACTTCTCATTCTAATAAAGTGGC...ATGGCTGTCCAGCCCGTTACTGCTTAGACTGCTCTTTGCCCATGTCTTCCAACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142714.8 |
||
| CDS-3UTR TCA 90 bp | CCACTCCAGGCATGGCCGGAACTCAGCATTCAATCCCAGCGTCTCATTAACAGGCTACATGTGGTCTTTTaGACTGCCTTGGAAAGTCTC | + |
|
Preference number: 4 (lower is better) Translates to: PLQAWPELSIQSQRLINRLHVVF*TALESL Trigger: GAGACTTTCCAAGGCAGTTCAAAAGACCACATGTAG...CCTGTTAATGAGACGCTGGGATTGAATGCTGAGTTCCGGCCATGCCTGGAGTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
||
| CDS-3UTR CCA 90 bp | TTTGTGGTCTCTGTACAGCCACTCCAGGCATGGCCGGAACTCAGCATTCAATCCACTCTTCCTTTTCTTTaGCTTGCTCCGCTTGCTCTC | + |
|
Preference number: 4 (lower is better) Translates to: FVVSVQPLQAWPELSIQSTLPFL*LAPLAL Trigger: GAGAGCAAGCGGAGCAAGCCAAAGAAAAGGAAGAGT...GGATTGAATGCTGAGTTCCGGCCATGCCTGGAGTGGCTGTACAGAGACCACAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
||
| CDS-3UTR CCA 90 bp | GAAGTCTTCATCCTCACCCCGAGGCTGGTGACCCCTCCTGTGCGTCTTGCCTTCATAGCAATATATGAATaGAGATGTTGGAAACGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: EVFILTPRLVTPPVRLAFIAIYE*RCWKRL Trigger: CAGACGTTTCCAACATCTCCATTCATATATTGCTAT...GAAGGCAAGACGCACAGGAGGGGTCACCAGCCTCGGGGTGAGGATGAAGACTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000126968.2 |
||
| CDS-3UTR CCA 90 bp | TTTGTGGTCTCTGTACAGCCACTCCAGGCATGGCCGGAACTCAGCATTCAATCCAGAAACAAATCATCATaGCTGCCGTCCTCTGTACTC | + |
|
Preference number: 4 (lower is better) Translates to: FVVSVQPLQAWPELSIQSRNKSS*LPSSVL Trigger: GAGTACAGAGGACGGCAGCCATGATGATTTGTTTCT...GGATTGAATGCTGAGTTCCGGCCATGCCTGGAGTGGCTGTACAGAGACCACAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
||
| CDS-3UTR TCA 90 bp | CAGGCATGGCCGGAACTCAGCATTCAATCCCAGCGTCTCATTAACAGGTACTTACACACCCCACCAAGTTaGGAAGGATGTCATTGTCTT | + |
|
Preference number: 4 (lower is better) Translates to: QAWPELSIQSQRLINRYLHTPPS*EGCHCL Trigger: AAGACAATGACATCCTTCTCAACTTGGTGGGGTGTG...TAAGTACCTGTTAATGAGACGCTGGGATTGAATGCTGAGTTCCGGCCATGCCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107824.9 |
||
| CDS-3UTR CCA 90 bp | GAACTCTTTGTGGTCTCTGTACAGCCACTCCAGGCATGGCCGGAACTCAGCATTTGTCTCTTCTACATGTaGTCTTTTGAACTGCCTTGG | + |
|
Preference number: 4 (lower is better) Translates to: ELFVVSVQPLQAWPELSICLFYM*SFELPW Trigger: CCAAGGCAGTTCAAAAGACCACATGTAGAAGAGACA...AATGCTGAGTTCCGGCCATGCCTGGAGTGGCTGTACAGAGACCACAAAGAGTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
||
| CDS-3UTR CCA 90 bp | CAGGCATGGCCGGAACTCAGCATTCAATCCCAGCGTCTCATTAACAGGTACTTAACTCTTCCTTTTCTTTaGCTTGCTCCGCTTGCTCTC | + |
|
Preference number: 4 (lower is better) Translates to: QAWPELSIQSQRLINRYLTLPFL*LAPLAL Trigger: GAGAGCAAGCGGAGCAAGCCAAAGAAAAGGAAGAGT...TAAGTACCTGTTAATGAGACGCTGGGATTGAATGCTGAGTTCCGGCCATGCCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
||
| 3UTR CAA 72 bp | ATGGCTGTTAACAGTGCGAACAAAATGTCCCTGCCATaGCACTCAAGTTTGAGGATGCCTTTCACACCTCCG | + |
|
Preference number: 4 (lower is better) Translates to: MAVNSANKMSLP*HSSLRMPFTPP Trigger: CGGAGGTGTGAAAGGCATCCTCAAACTTGAGTGCAATGGCAGGGACATTTTGTTCGCACTGTTAACAGCCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
||
| CDS-3UTR TCA 90 bp | CCACTCCAGGCATGGCCGGAACTCAGCATTCAATCCCAGCGTCTCATTAACAGGGACATTTTTGTTGACTaGATAGTATCGGTTGTTCCA | + |
|
Preference number: 4 (lower is better) Translates to: PLQAWPELSIQSQRLINRDIFVD*IVSVVP Trigger: TGGAACAACCGATACTATTCAGTCAACAAAAATGTC...CCTGTTAATGAGACGCTGGGATTGAATGCTGAGTTCCGGCCATGCCTGGAGTGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107824.9 |
||
| CDS-3UTR GCA 90 bp | TTTGTGGTCTCTGTACAGCCACTCCAGGCATGGCCGGAACTCAGCATTCAATCCTGTGGTCTTTTGAACTaGCTTGGAAAGTCTCCATTT | + |
|
Preference number: 4 (lower is better) Translates to: FVVSVQPLQAWPELSIQSCGLLN*LGKSPF Trigger: AAATGGAGACTTTCCAAGGCAGTTCAAAAGACCACA...GGATTGAATGCTGAGTTCCGGCCATGCCTGGAGTGGCTGTACAGAGACCACAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
||
| CDS-3UTR CCA 90 bp | CCACTCCAGGCATGGCCGGAACTCAGCATTCAATCCCAGCGTCTCATTAACAGGTGTTATTATCTATCTTaGCCTCGATGTCTTTGTCAC | + |
|
Preference number: 4 (lower is better) Translates to: PLQAWPELSIQSQRLINRCYYLS*PRCLCH Trigger: GTGACAAAGACATCGAGGCCAAGATAGATAATAACA...CCTGTTAATGAGACGCTGGGATTGAATGCTGAGTTCCGGCCATGCCTGGAGTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107824.9 |
||
| CDS-3UTR TCA 90 bp | GAACTCTTTGTGGTCTCTGTACAGCCACTCCAGGCATGGCCGGAACTCAGCATTGTTCCACCTTCCAGATaGTCTGTTATTATCTATCTT | + |
|
Preference number: 4 (lower is better) Translates to: ELFVVSVQPLQAWPELSIVPPSR*SVIIYL Trigger: AAGATAGATAATAACAGATCATCTGGAAGGTGGAAC...AATGCTGAGTTCCGGCCATGCCTGGAGTGGCTGTACAGAGACCACAAAGAGTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107824.9 |
||
| CDS-3UTR TCA 90 bp | TCCAATGAGCTTTTAAGTCCTCAAACATTGGAGATAAAATCATCTGATGAGCTTGAGATGTCCTCTCTCTaGGCAGAGGCAGCAGGCCCG | + |
|
Preference number: 4 (lower is better) Translates to: SNELLSPQTLEIKSSDELEMSSL*AEAAGP Trigger: CGGGCCTGCTGCCTCTGCTCAGAGAGAGGACATCTC...AAGCTCATCAGATGATTTTATCTCCAATGTTTGAGGACTTAAAAGCTCATTGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107824.9 |
||
| CDS-3UTR CCA 90 bp | TATATTTTATGGTCAGCAGTTCAGAGAAGGGTAAATAGGCTGGGTCTTGGGGAAGAAGTAGCAGGGCTCTaGGTCTTTTCTTCCGCTTGG | + |
|
Preference number: 4 (lower is better) Translates to: YILWSAVQRRVNRLGLGEEVAGL*VFSSAW Trigger: CCAAGCGGAAGAAAAGACCCAGAGCCCTGCTACTTC...TTCCCCAAGACCCAGCCTATTTACCCTTCTCTGAACTGCTGACCATAAAATATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000142714.8 |
||
| CDS-3UTR CCA 90 bp | CCACTCCAGGCATGGCCGGAACTCAGCATTCAATCCCAGCGTCTCATTAACAGGATAGCAATATATGAATaGAGATGTTGGAAACGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: PLQAWPELSIQSQRLINRIAIYE*RCWKRL Trigger: CAGACGTTTCCAACATCTCCATTCATATATTGCTAT...CCTGTTAATGAGACGCTGGGATTGAATGCTGAGTTCCGGCCATGCCTGGAGTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
||
| CDS-3UTR TCA 90 bp | ACACCTCCGTCCTGCAAGCCCACACTGCGCACATTTTGTTTGTGTATTTGCTATCACATTTTCGTTCTCTaGAGTGGTACTTTCTTCCTC | + |
|
Preference number: 4 (lower is better) Translates to: TPPSCKPTLRTFCLCICYHIFVL*SGTFFL Trigger: GAGGAAGAAAGTACCACTTCAGAGAACGAAAATGTG...ATAGCAAATACACAAACAAAATGTGCGCAGTGTGGGCTTGCAGGACGGAGGTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107824.9 |
||
| CDS-3UTR TCA 90 bp | AGTGGGCAGGAGAAAGGGAGAGGTGCATTATTGCTTTCTCAGTACAAACTCTCCCACATTTTCGTTCTCTaGAGTGGTACTTTCTTCCTC | + |
|
Preference number: 4 (lower is better) Translates to: SGQEKGRGALLLSQYKLSHIFVL*SGTFFL Trigger: GAGGAAGAAAGTACCACTTCAGAGAACGAAAATGTG...GGAGAGTTTGTACTGAGAAAGCAATAATGCACCTCTCCCTTTCTCCTGCCCACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142714.8 |
||
| CDS-3UTR CCA 90 bp | GCACATTTTGTTTGTGTATTTGCTATGTCCTCTCCTCCACCTCCTCCAGAATTCTGTGGTTGGAAGACATaGGCAAAGAGCAGTCTAAGC | + |
|
Preference number: 4 (lower is better) Translates to: AHFVCVFAMSSPPPPPEFCGWKT*AKSSLS Trigger: GCTTAGACTGCTCTTTGCCCATGTCTTCCAACCACA...GAATTCTGGAGGAGGTGGAGGAGAGGACATAGCAAATACACAAACAAAATGTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107824.9 |
||
| CDS-3UTR CCA 90 bp | GAATTCAATGGTGACAGCTTCATTTTACATGCTGTTCTGTACAGAGAGAGATTCCTGCCTCCAGATTTCTaGGCAAGCGTCAGCATGGTG | + |
|
Preference number: 4 (lower is better) Translates to: EFNGDSFILHAVLYRERFLPPDF*ASVSMV Trigger: CACCATGCTGACGCTTGCCCAGAAATCTGGAGGCAG...GAATCTCTCTCTGTACAGAACAGCATGTAAAATGAAGCTGTCACCATTGAATTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107824.9 |
||
| CDS-3UTR CCA 90 bp | GAACTCTTTGTGGTCTCTGTACAGCCACTCCAGGCATGGCCGGAACTCAGCATTATAGCAATATATGAATaGAGATGTTGGAAACGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: ELFVVSVQPLQAWPELSIIAIYE*RCWKRL Trigger: CAGACGTTTCCAACATCTCCATTCATATATTGCTAT...AATGCTGAGTTCCGGCCATGCCTGGAGTGGCTGTACAGAGACCACAAAGAGTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
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| CDS-3UTR CCA 90 bp | ACACCTCCGTCCTGCAAGCCCACACTGCGCACATTTTGTTTGTGTATTTGCTATTGTCTCTTCTACATGTaGTCTTTTGAACTGCCTTGG | + |
|
Preference number: 4 (lower is better) Translates to: TPPSCKPTLRTFCLCICYCLFYM*SFELPW Trigger: CCAAGGCAGTTCAAAAGACCACATGTAGAAGAGACA...ATAGCAAATACACAAACAAAATGTGCGCAGTGTGGGCTTGCAGGACGGAGGTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
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| CDS-3UTR TCA 90 bp | TCCAATGAGCTTTTAAGTCCTCAAACATTGGAGATAAAATCATCTGATGAGCTTTCCGCTTGCTCTCCCTaGGAAGCCGCTCTTCTCTCA | + |
|
Preference number: 4 (lower is better) Translates to: SNELLSPQTLEIKSSDELSACSP*EAALLS Trigger: TGAGAGAAGAGCGGCTTCTCAGGGAGAGCAAGCGGA...AAGCTCATCAGATGATTTTATCTCCAATGTTTGAGGACTTAAAAGCTCATTGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
||
| CDS-3UTR GCA 90 bp | ACACCTCCGTCCTGCAAGCCCACACTGCGCACATTTTGTTTGTGTATTTGCTATTGTGGTCTTTTGAACTaGCTTGGAAAGTCTCCATTT | + |
|
Preference number: 4 (lower is better) Translates to: TPPSCKPTLRTFCLCICYCGLLN*LGKSPF Trigger: AAATGGAGACTTTCCAAGGCAGTTCAAAAGACCACA...ATAGCAAATACACAAACAAAATGTGCGCAGTGTGGGCTTGCAGGACGGAGGTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
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| CDS-3UTR CCA 90 bp | GCACATTTTGTTTGTGTATTTGCTATGTCCTCTCCTCCACCTCCTCCAGAATTCAGAAACAAATCATCATaGCTGCCGTCCTCTGTACTC | + |
|
Preference number: 4 (lower is better) Translates to: AHFVCVFAMSSPPPPPEFRNKSS*LPSSVL Trigger: GAGTACAGAGGACGGCAGCCATGATGATTTGTTTCT...GAATTCTGGAGGAGGTGGAGGAGAGGACATAGCAAATACACAAACAAAATGTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
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| CDS-3UTR CCA 90 bp | GCACATTTTGTTTGTGTATTTGCTATGTCCTCTCCTCCACCTCCTCCAGAATTCATCCTTCCTCCTTGTTaGCATTATGTATACTCTGGG | + |
|
Preference number: 4 (lower is better) Translates to: AHFVCVFAMSSPPPPPEFILPPC*HYVYSG Trigger: CCCAGAGTATACATAATGCCAACAAGGAGGAAGGAT...GAATTCTGGAGGAGGTGGAGGAGAGGACATAGCAAATACACAAACAAAATGTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107824.9 |
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| CDS-3UTR CCA 90 bp | CACCTCCGTCCTGCAAGCCCACACTGCGCACATTTTGTTTGTGTATTTGCTATGTCTTTTGAACTGCCTTaGAAAGTCTCCATTTTTCTT | + |
|
Preference number: 4 (lower is better) Translates to: HLRPASPHCAHFVCVFAMSFELP*KVSIFL Trigger: AAGAAAAATGGAGACTTTCCAAGGCAGTTCAAAAGA...CATAGCAAATACACAAACAAAATGTGCGCAGTGTGGGCTTGCAGGACGGAGGTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
||
| CDS-3UTR TCA 90 bp | GAATTCAATGGTGACAGCTTCATTTTACATGCTGTTCTGTACAGAGAGAGATTCGCCACTTTATTAGAATaGGAAGTAGCAGGGCTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: EFNGDSFILHAVLYRERFATLLE*EVAGLW Trigger: CCAGAGCCCTGCTACTTCTCATTCTAATAAAGTGGC...GAATCTCTCTCTGTACAGAACAGCATGTAAAATGAAGCTGTCACCATTGAATTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107824.9 |
||
| CDS-3UTR CCA 90 bp | GGAGAAAGGGAGAGGTGCATTATTGCTTTCTCAGTACAAACTCTCCAGATGTTTTTTCGTTCTCTGAAGTaGTACTTTCTTCCTCCTCAT | + |
|
Preference number: 4 (lower is better) Translates to: GERERCIIAFSVQTLQMFFRSLK*YFLPPH Trigger: ATGAGGAGGAAGAAAGTACCACTTCAGAGAACGAAA...AAACATCTGGAGAGTTTGTACTGAGAAAGCAATAATGCACCTCTCCCTTTCTCC 41% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000142714.8 |
||
| CDS-3UTR CCA 90 bp | GCACATTTTGTTTGTGTATTTGCTATGTCCTCTCCTCCACCTCCTCCAGAATTCTCTTTTGAACTGCCTTaGAAAGTCTCCATTTTTCTT | + |
|
Preference number: 4 (lower is better) Translates to: AHFVCVFAMSSPPPPPEFSFELP*KVSIFL Trigger: AAGAAAAATGGAGACTTTCCAAGGCAGTTCAAAAGA...GAATTCTGGAGGAGGTGGAGGAGAGGACATAGCAAATACACAAACAAAATGTGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
||
| 3UTR CAA 72 bp | AGTACTGCCACACCACTATACAGAGACTCTGAGACCTaGAGAGATACAAGAATAATTCTGTTCTTATCAGGT | + |
|
Preference number: 4 (lower is better) Translates to: STATPLYRDSET*RDTRIILFLSG Trigger: ACCTGATAAGAACAGAATTATTCTTGTATCTCTCAAGGTCTCAGAGTCTCTGTATAGTGGTGTGGCAGTACT 40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142714.8 |
||
| CDS-3UTR TCA 90 bp | TCCAATGAGCTTTTAAGTCCTCAAACATTGGAGATAAAATCATCTGATGAGCTTCTACATGTGGTCTTTTaGACTGCCTTGGAAAGTCTC | + |
|
Preference number: 4 (lower is better) Translates to: SNELLSPQTLEIKSSDELLHVVF*TALESL Trigger: GAGACTTTCCAAGGCAGTTCAAAAGACCACATGTAG...AAGCTCATCAGATGATTTTATCTCCAATGTTTGAGGACTTAAAAGCTCATTGGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
||
| CDS-3UTR CCA 90 bp | GAGGTGCATTATTGCTTTCTCAGTACAAACTCTCCAGATGTTTATTATCTTGCTATCCTTCCTCCTTGTTaGCATTATGTATACTCTGGG | + |
|
Preference number: 4 (lower is better) Translates to: EVHYCFLSTNSPDVYYLAILPPC*HYVYSG Trigger: CCCAGAGTATACATAATGCCAACAAGGAGGAAGGAT...AGCAAGATAATAAACATCTGGAGAGTTTGTACTGAGAAAGCAATAATGCACCTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142714.8 |
||
| CDS-3UTR CCA 90 bp | GAATTCAATGGTGACAGCTTCATTTTACATGCTGTTCTGTACAGAGAGAGATTCTTTCGTTCTCTGAAGTaGTACTTTCTTCCTCCTCAT | + |
|
Preference number: 4 (lower is better) Translates to: EFNGDSFILHAVLYRERFFRSLK*YFLPPH Trigger: ATGAGGAGGAAGAAAGTACCACTTCAGAGAACGAAA...GAATCTCTCTCTGTACAGAACAGCATGTAAAATGAAGCTGTCACCATTGAATTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107824.9 |
||
| 3UTR CAA 72 bp | GCTTTCTCAGTACAAACTCTCCAGATGTTTATTATCTaGCTGCAGAAGATGCTTGTCTATATTTTATGGTCA | + |
|
Preference number: 4 (lower is better) Translates to: AFSVQTLQMFII*LQKMLVYILWS Trigger: TGACCATAAAATATAGACAAGCATCTTCTGCAGCAAGATAATAAACATCTGGAGAGTTTGTACTGAGAAAGC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142714.8 |
||
| CDS-3UTR CAA 90 bp | GAACTCTTTGTGGTCTCTGTACAGCCACTCCAGGCATGGCCGGAACTCAGCATTGCGCAGCCAGAGGCGTaGGGTTTTGAGCCCCTGGGG | + |
|
Preference number: 5 (lower is better) Translates to: ELFVVSVQPLQAWPELSIAQPEA*GFEPLG Trigger: CCCCAGGGGCTCAAAACCCAACGCCTCTGGCTGCGC...AATGCTGAGTTCCGGCCATGCCTGGAGTGGCTGTACAGAGACCACAAAGAGTTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
||
| CDS-3UTR CAA 90 bp | CAGGCATGGCCGGAACTCAGCATTCAATCCCAGCGTCTCATTAACAGGTACTTACCCCTCCTGTGCGTCTaGCCTTCTCTACTCCTGGTC | + |
|
Preference number: 5 (lower is better) Translates to: QAWPELSIQSQRLINRYLPLLCV*PSLLLV Trigger: GACCAGGAGTAGAGAAGGCAAGACGCACAGGAGGGG...TAAGTACCTGTTAATGAGACGCTGGGATTGAATGCTGAGTTCCGGCCATGCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
||
| CDS TCA 90 bp | CCTCTGTACTCTTCCTTTTCTTTGGCTTGCTCCGCTTGCTCTCCCTaGGAAGCCGCTCTTCTCTCAGCCTGTGGTAATGGGATGCATGGT | + |
|
Preference number: 5 (lower is better) Translates to: PLYSSFSLACSACSP*EAALLSACGNGMHG Trigger: ACCATGCATCCCATTACCACAGGCTGAGAGAAGAGCGGCTTCTCAGGGAGAGCAAGCGGAGCAAGCCAAAGAAAAGGAAGAGTACAGAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
||
| CDS-3UTR CAA 90 bp | CAGGCATGGCCGGAACTCAGCATTCAATCCCAGCGTCTCATTAACAGGTACTTACAGAGGCGTTGGGTTTaGAGCCCCTGGGGAAGTCTT | + |
|
Preference number: 5 (lower is better) Translates to: QAWPELSIQSQRLINRYLQRRWV*SPWGSL Trigger: AAGACTTCCCCAGGGGCTCAAAACCCAACGCCTCTG...TAAGTACCTGTTAATGAGACGCTGGGATTGAATGCTGAGTTCCGGCCATGCCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
||
| CDS-3UTR CAA 90 bp | GTCTCTGTACAGCCACTCCAGGCATGGCCGGAACTCAGCATTCAATCCCAGCGTTACTCTTCCTTTTCTTaGGCTTGCTCCGCTTGCTCT | + |
|
Preference number: 5 (lower is better) Translates to: VSVQPLQAWPELSIQSQRYSSFS*ACSACS Trigger: AGAGCAAGCGGAGCAAGCCAAAGAAAAGGAAGAGTA...ACGCTGGGATTGAATGCTGAGTTCCGGCCATGCCTGGAGTGGCTGTACAGAGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
||
| CDS-3UTR CAA 90 bp | CCACTCCAGGCATGGCCGGAACTCAGCATTCAATCCCAGCGTCTCATTAACAGGGTTCTTCTGATTTGGTaGACTACTCACTGTTTCCGA | + |
|
Preference number: 5 (lower is better) Translates to: PLQAWPELSIQSQRLINRVLLIW*TTHCFR Trigger: TCGGAAACAGTGAGTAGTCAACCAAATCAGAAGAAC...CCTGTTAATGAGACGCTGGGATTGAATGCTGAGTTCCGGCCATGCCTGGAGTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107824.9 |
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| CDS-3UTR CAA 90 bp | CACCTCCGTCCTGCAAGCCCACACTGCGCACATTTTGTTTGTGTATTTGCTATGCTGGGCATAATGGACTaGGCTGTAGAGCTGAAATTC | + |
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Preference number: 5 (lower is better) Translates to: HLRPASPHCAHFVCVFAMLGIMD*AVELKF Trigger: GAATTTCAGCTCTACAGCCAAGTCCATTATGCCCAG...CATAGCAAATACACAAACAAAATGTGCGCAGTGTGGGCTTGCAGGACGGAGGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107824.9 |
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| CDS-3UTR CAA 90 bp | CCTCCAGAATTCAATGGTGACAGCTTCATTTTACATGCTGTTCTGTACAGAGAGCAGAGGCGTTGGGTTTaGAGCCCCTGGGGAAGTCTT | + |
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Preference number: 5 (lower is better) Translates to: PPEFNGDSFILHAVLYREQRRWV*SPWGSL Trigger: AAGACTTCCCCAGGGGCTCAAAACCCAACGCCTCTG...CTCTCTGTACAGAACAGCATGTAAAATGAAGCTGTCACCATTGAATTCTGGAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
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| CDS-3UTR CAA 90 bp | TCCAATGAGCTTTTAAGTCCTCAAACATTGGAGATAAAATCATCTGATGAGCTTGCGCAGCCAGAGGCGTaGGGTTTTGAGCCCCTGGGG | + |
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Preference number: 5 (lower is better) Translates to: SNELLSPQTLEIKSSDELAQPEA*GFEPLG Trigger: CCCCAGGGGCTCAAAACCCAACGCCTCTGGCTGCGC...AAGCTCATCAGATGATTTTATCTCCAATGTTTGAGGACTTAAAAGCTCATTGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
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| CDS-3UTR CAA 90 bp | GAATTCAATGGTGACAGCTTCATTTTACATGCTGTTCTGTACAGAGAGAGATTCCCCCTCCTGTGCGTCTaGCCTTCTCTACTCCTGGTC | + |
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Preference number: 5 (lower is better) Translates to: EFNGDSFILHAVLYRERFPLLCV*PSLLLV Trigger: GACCAGGAGTAGAGAAGGCAAGACGCACAGGAGGGG...GAATCTCTCTCTGTACAGAACAGCATGTAAAATGAAGCTGTCACCATTGAATTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
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| CDS-3UTR CAA 90 bp | ACACCTCCGTCCTGCAAGCCCACACTGCGCACATTTTGTTTGTGTATTTGCTATTACTCTTCCTTTTCTTaGGCTTGCTCCGCTTGCTCT | + |
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Preference number: 5 (lower is better) Translates to: TPPSCKPTLRTFCLCICYYSSFS*ACSACS Trigger: AGAGCAAGCGGAGCAAGCCAAAGAAAAGGAAGAGTA...ATAGCAAATACACAAACAAAATGTGCGCAGTGTGGGCTTGCAGGACGGAGGTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
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| CDS-3UTR CAA 90 bp | GAACTCTTTGTGGTCTCTGTACAGCCACTCCAGGCATGGCCGGAACTCAGCATTAAGTCTCCATTTTTCTaGAGATCTTTGACTTTTCGC | + |
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Preference number: 5 (lower is better) Translates to: ELFVVSVQPLQAWPELSIKSPFF*RSLTFR Trigger: GCGAAAAGTCAAAGATCTCAAGAAAAATGGAGACTT...AATGCTGAGTTCCGGCCATGCCTGGAGTGGCTGTACAGAGACCACAAAGAGTTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
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| CDS-3UTR CAA 90 bp | GCACATTTTGTTTGTGTATTTGCTATGTCCTCTCCTCCACCTCCTCCAGAATTCTCAAAACATCTGTGGTaGGAAGACATGGGCAAAGAG | + |
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Preference number: 5 (lower is better) Translates to: AHFVCVFAMSSPPPPPEFSKHLW*EDMGKE Trigger: CTCTTTGCCCATGTCTTCCAACCACAGATGTTTTGA...GAATTCTGGAGGAGGTGGAGGAGAGGACATAGCAAATACACAAACAAAATGTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107824.9 |
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| CDS-3UTR CAA 90 bp | CACCTCCGTCCTGCAAGCCCACACTGCGCACATTTTGTTTGTGTATTTGCTATGAAGTCTCCATTTTTCTaGAGATCTTTGACTTTTCGC | + |
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Preference number: 5 (lower is better) Translates to: HLRPASPHCAHFVCVFAMKSPFF*RSLTFR Trigger: GCGAAAAGTCAAAGATCTCAAGAAAAATGGAGACTT...CATAGCAAATACACAAACAAAATGTGCGCAGTGTGGGCTTGCAGGACGGAGGTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
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| CDS-3UTR CAA 90 bp | GGGAGAGGTGCATTATTGCTTTCTCAGTACAAACTCTCCAGATGTTTATTATCTCTGGGCATAATGGACTaGGCTGTAGAGCTGAAATTC | + |
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Preference number: 5 (lower is better) Translates to: GRGALLLSQYKLSRCLLSLGIMD*AVELKF Trigger: GAATTTCAGCTCTACAGCCAAGTCCATTATGCCCAG...AGATAATAAACATCTGGAGAGTTTGTACTGAGAAAGCAATAATGCACCTCTCCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142714.8 |
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| CDS-3UTR CAA 90 bp | TATATTTTATGGTCAGCAGTTCAGAGAAGGGTAAATAGGCTGGGTCTTGGGGAAGTTCTTCTGATTTGGTaGACTACTCACTGTTTCCGA | + |
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Preference number: 5 (lower is better) Translates to: YILWSAVQRRVNRLGLGEVLLIW*TTHCFR Trigger: TCGGAAACAGTGAGTAGTCAACCAAATCAGAAGAAC...TTCCCCAAGACCCAGCCTATTTACCCTTCTCTGAACTGCTGACCATAAAATATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000142714.8 |
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| CDS-3UTR CAA 90 bp | TCCAATGAGCTTTTAAGTCCTCAAACATTGGAGATAAAATCATCTGATGAGCTTTTCCTTTTCTTTGGCTaGCTCCGCTTGCTCTCCCTG | + |
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Preference number: 5 (lower is better) Translates to: SNELLSPQTLEIKSSDELFLFFG*LRLLSL Trigger: CAGGGAGAGCAAGCGGAGCAAGCCAAAGAAAAGGAA...AAGCTCATCAGATGATTTTATCTCCAATGTTTGAGGACTTAAAAGCTCATTGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
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| CDS CCA 90 bp | ATCCCTTTGCTGGATGTCATATTTGCCATCATAGCAATATATGAATaGAGATGTTGGAAACGTCTGGTTAAACATTCGTCTCTCTGTACA | + |
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Preference number: 5 (lower is better) Translates to: IPLLDVIFAIIAIYE*RCWKRLVKHSSLCT Trigger: TGTACAGAGAGACGAATGTTTAACCAGACGTTTCCAACATCTCCATTCATATATTGCTATGATGGCAAATATGACATCCAGCAAAGGGAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000107824.9 ENSMUST00000126968.2 ENSMUST00000147272.8 |
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| CDS CCA 72 bp | ATCATGGCTGCCGTCCTCTGTACTCTTCCTTTTCTTTaGCTTGCTCCGCTTGCTCTCCCTGAGAAGCCGCTC | + |
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Preference number: 6 (lower is better) Translates to: IMAAVLCTLPFL*LAPLALPEKPL Trigger: GAGCGGCTTCTCAGGGAGAGCAAGCGGAGCAAGCCAAAGAAAAGGAAGAGTACAGAGGACGGCAGCCATGAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
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| CDS CAA 72 bp | TGGCTGCCGTCCTCTGTACTCTTCCTTTTCTTTGGCTaGCTCCGCTTGCTCTCCCTGAGAAGCCGCTCTTCT | + |
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Preference number: 6 (lower is better) Translates to: WLPSSVLFLFFG*LRLLSLRSRSS Trigger: AGAAGAGCGGCTTCTCAGGGAGAGCAAGCGGAGCAAGCCAAAGAAAAGGAAGAGTACAGAGGACGGCAGCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
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| CDS TCA 72 bp | TCTTCCTTTTCTTTGGCTTGCTCCGCTTGCTCTCCCTaGGAAGCCGCTCTTCTCTCAGCCTGTGGTAATGGG | + |
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Preference number: 6 (lower is better) Translates to: SSFSLACSACSP*EAALLSACGNG Trigger: CCCATTACCACAGGCTGAGAGAAGAGCGGCTTCTCAGGGAGAGCAAGCGGAGCAAGCCAAAGAAAAGGAAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
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| CDS CAA 72 bp | TCCTCTGTACTCTTCCTTTTCTTTGGCTTGCTCCGCTaGCTCTCCCTGAGAAGCCGCTCTTCTCTCAGCCTG | + |
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Preference number: 6 (lower is better) Translates to: SSVLFLFFGLLR*LSLRSRSSLSL Trigger: CAGGCTGAGAGAAGAGCGGCTTCTCAGGGAGAGCAAGCGGAGCAAGCCAAAGAAAAGGAAGAGTACAGAGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
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| CDS CAA 90 bp | AAATCATCATGGCTGCCGTCCTCTGTACTCTTCCTTTTCTTTGGCTaGCTCCGCTTGCTCTCCCTGAGAAGCCGCTCTTCTCTCAGCCTG | + |
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Preference number: 6 (lower is better) Translates to: KSSWLPSSVLFLFFG*LRLLSLRSRSSLSL Trigger: CAGGCTGAGAGAAGAGCGGCTTCTCAGGGAGAGCAAGCGGAGCAAGCCAAAGAAAAGGAAGAGTACAGAGGACGGCAGCCATGATGATTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
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| CDS TCA 72 bp | GCCCTTCAGCACCAGCGGTCTCACACCCCACCAAGTTaGGAAGGATGTCATTGTCTTTACCATCTTCCTCAG | + |
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Preference number: 6 (lower is better) Translates to: ALQHQRSHTPPS*EGCHCLYHLPQ Trigger: CTGAGGAAGATGGTAAAGACAATGACATCCTTCTCAACTTGGTGGGGTGTGAGACCGCTGGTGCTGAAGGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142714.8 |
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| CDS TCA 72 bp | CATCTTCAGCACCAGCGGTCTCACACCCCACCAAGTTaGGAAGGATGTCATTGTCTTTACCATCTTCCTCAG | + |
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Preference number: 6 (lower is better) Translates to: HLQHQRSHTPPS*EGCHCLYHLPQ Trigger: CTGAGGAAGATGGTAAAGACAATGACATCCTTCTCAACTTGGTGGGGTGTGAGACCGCTGGTGCTGAAGATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107824.9 |
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| CDS CAA 90 bp | ATATCGTGGTGGCGCCTCTTATCTGTCTCTTCTACATGTGGTCTTTaGAACTGCCTTGGAAAGTCTCCATTTTTCTTGAGATCTTTGACT | + |
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Preference number: 6 (lower is better) Translates to: ISWWRLLSVSSTCGL*NCLGKSPFFLRSLT Trigger: AGTCAAAGATCTCAAGAAAAATGGAGACTTTCCAAGGCAGTTCAAAAGACCACATGTAGAAGAGACAGATAAGAGGCGCCACCACGATAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
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| CDS CAA 72 bp | AACTGCCTTGGAAAGTCTCCATTTTTCTTGAGATCTTaGACTTTTCGCTTTATTCTCCGATCCCTTTGCTGG | + |
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Preference number: 6 (lower is better) Translates to: NCLGKSPFFLRS*TFRFILRSLCW Trigger: CCAGCAAAGGGATCGGAGAATAAAGCGAAAAGTCAAAGATCTCAAGAAAAATGGAGACTTTCCAAGGCAGTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
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| CDS CAA 72 bp | GTTTCCGAAATGCTCTCTCTGAGAAAAATATCAACTTaGACTTTTCGCTTTATTCTCCGATCCCTTTGCTGG | + |
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Preference number: 6 (lower is better) Translates to: VSEMLSLRKIST*TFRFILRSLCW Trigger: CCAGCAAAGGGATCGGAGAATAAAGCGAAAAGTCAAAGTTGATATTTTTCTCAGAGAGAGCATTTCGGAAAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000126968.2 |
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| CDS CCA 72 bp | ATCTGTCTCTTCTACATGTGGTCTTTTGAACTGCCTTaGAAAGTCTCCATTTTTCTTGAGATCTTTGACTTT | + |
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Preference number: 6 (lower is better) Translates to: ICLFYMWSFELP*KVSIFLEIFDF Trigger: AAAGTCAAAGATCTCAAGAAAAATGGAGACTTTCCAAGGCAGTTCAAAAGACCACATGTAGAAGAGACAGAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000107824.9 ENSMUST00000147272.8 |
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