Pregenerated sensors for ZCCHC3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074682Ensembl transcript IDs: ENSMUST00000099207.5
Found 79 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGGAGGGAGAGTTACTGCACGTTTGCAGCTAGCCTGTTCTCTGAATaGAGCCGGTCCAAGCCGGCCTACGGGAGACACACTGAGACCCTG | + |
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Preference number: 1 (lower is better) Translates to: GRESYCTFAASLFSE*SRSKPAYGRHTETL Trigger: CAGGGTCTCAGTGTGTCTCCCGTAGGCCGGCTTGGACCGGCTGCATTCAGAGAACAGGCTAGCTGCAAACGTGCAGTAACTCTCCCTCCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| 3UTR TCA 90 bp | GAAAGGGATGGCCCTGGAACATTCAAGATGTGGTACTCCGAGGGCTaGTGCAAGCAGCCTGGAGTGCTCCTGGCCCCTTCCTTCCCTAGC | + |
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Preference number: 1 (lower is better) Translates to: ERDGPGTFKMWYSEG*CKQPGVLLAPSFPS Trigger: GCTAGGGAAGGAAGGGGCCAGGAGCACTCCAGGCTGCTTGCATCAGCCCTCGGAGTACCACATCTTGAATGTTCCAGGGCCATCCCTTTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| 3UTR-3UTR CCA 90 bp | GTGCTCCTGGCCCCTTCCTTCCCTAGCTCCCAAGCAGCAGGGCGAGCTTTCTGGGTGTCTATCCCGCGTTaGGCCCAGTACCCTGGGCTG | + |
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Preference number: 2 (lower is better) Translates to: VLLAPSFPSSQAAGRAFWVSIPR*AQYPGL Trigger: CAGCCCAGGGTACTGGGCCCAACGCGGGATAGACAC...CCAGAAAGCTCGCCCTGCTGCTTGGGAGCTAGGGAAGGAAGGGGCCAGGAGCAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| 3UTR-3UTR TCA 90 bp | TGGCCCCTTCCTTCCCTAGCTCCCAAGCAGCAGGGCGAGCTTTCTGGGCTCTTTCTACTGTGGGCTATCTaGGGCACCGCGCTGTGTACT | + |
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Preference number: 2 (lower is better) Translates to: WPLPSLAPKQQGELSGLFLLWAI*GTALCT Trigger: AGTACACAGCGCGGTGCCTCAGATAGCCCACAGTAG...AAAGAGCCCAGAAAGCTCGCCCTGCTGCTTGGGAGCTAGGGAAGGAAGGGGCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| 3UTR-3UTR CCA 90 bp | TGGCCCCTTCCTTCCCTAGCTCCCAAGCAGCAGGGCGAGCTTTCTGGGCTCTTTCCCAGTACCCTGGGCTaGAGGCATAATGACCAAGGC | + |
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Preference number: 2 (lower is better) Translates to: WPLPSLAPKQQGELSGLFPSTLG*RHNDQG Trigger: GCCTTGGTCATTATGCCTCCAGCCCAGGGTACTGGG...AAAGAGCCCAGAAAGCTCGCCCTGCTGCTTGGGAGCTAGGGAAGGAAGGGGCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| 3UTR-3UTR CCA 90 bp | TGGCCCCTTCCTTCCCTAGCTCCCAAGCAGCAGGGCGAGCTTTCTGGGCTCTTTTTGGGCCCAGTACCCTaGGCTGGAGGCATAATGACC | + |
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Preference number: 2 (lower is better) Translates to: WPLPSLAPKQQGELSGLFLGPVP*AGGIMT Trigger: GGTCATTATGCCTCCAGCCCAGGGTACTGGGCCCAA...AAAGAGCCCAGAAAGCTCGCCCTGCTGCTTGGGAGCTAGGGAAGGAAGGGGCCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| 3UTR-3UTR CCA 90 bp | CCCTGGCCTGGCCTGGCCTGTTTCCCCAAGAACGCTTTCTGGTTTACCACTCACAGCCTGGAGTGCTCCTaGCCCCTTCCTTCCCTAGCT | + |
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Preference number: 2 (lower is better) Translates to: PWPGLACFPKNAFWFTTHSLECS*PLPSLA Trigger: AGCTAGGGAAGGAAGGGGCCAGGAGCACTCCAGGCT...GTGAGTGGTAAACCAGAAAGCGTTCTTGGGGAAACAGGCCAGGCCAGGCCAGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| 3UTR-3UTR GCA 90 bp | CCCTGGCCTGGCCTGGCCTGTTTCCCCAAGAACGCTTTCTGGTTTACCACTCACTCACCATTTCAAACATaGCAAAAAGGAGCACACGCG | + |
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Preference number: 2 (lower is better) Translates to: PWPGLACFPKNAFWFTTHSPFQT*QKGAHA Trigger: CGCGTGTGCTCCTTTTTGGCATGTTTGAAATGGTGA...GTGAGTGGTAAACCAGAAAGCGTTCTTGGGGAAACAGGCCAGGCCAGGCCAGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| 3UTR-3UTR CCA 90 bp | AAGAGAAGACAACAGCTGAAGAAAAGCAGTTTATCGAATTTCAAGCTAACTTGGACAAAAACCACCTCTTaGGTCTTTTCCAGCAGGGAA | + |
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Preference number: 2 (lower is better) Translates to: KRRQQLKKSSLSNFKLTWTKTTS*VFSSRE Trigger: TTCCCTGCTGGAAAAGACCCAAGAGGTGGTTTTTGT...CCAAGTTAGCTTGAAATTCGATAAACTGCTTTTCTTCAGCTGTTGTCTTCTCTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| 3UTR TCA 72 bp | CAAGCAGCAGGGCGAGCTTTCTGGGCTCTTTCGGGATaGTTTCTCCACACTGCTGGGGTCCGCACGGTGGAG | + |
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Preference number: 3 (lower is better) Translates to: QAAGRAFWALSG*FLHTAGVRTVE Trigger: CTCCACCGTGCGGACCCCAGCAGTGTGGAGAAATCATCCCGAAAGAGCCCAGAAAGCTCGCCCTGCTGCTTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| 3UTR CCA 72 bp | CACACTGCTGGGGTCCGCACGGTGGAGAGCGGACTTTaGGCCCAGCAGTGTCGAGGAGATTGTTGTGAAGTG | + |
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Preference number: 3 (lower is better) Translates to: HTAGVRTVESGL*AQQCRGDCCEV Trigger: CACTTCACAACAATCTCCTCGACACTGCTGGGCCCAAAGTCCGCTCTCCACCGTGCGGACCCCAGCAGTGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| 3UTR GCA 72 bp | AGCTTTCTGGGCTCTTTCGGGATGATTTCTCCACACTaGTGGGGTCCGCACGGTGGAGAGCGGACTTTGGGC | + |
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Preference number: 3 (lower is better) Translates to: SFLGSFGMISPH*WGPHGGERTLG Trigger: GCCCAAAGTCCGCTCTCCACCGTGCGGACCCCAGCAGTGTGGAGAAATCATCCCGAAAGAGCCCAGAAAGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| 3UTR-3UTR CAA 90 bp | TGCTCCTGGCCCCTTCCTTCCCTAGCTCCCAAGCAGCAGGGCGAGCTTTCTGGGAACAAAAACCACCTCTaGGGTCTTTTCCAGCAGGGA | + |
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Preference number: 3 (lower is better) Translates to: CSWPLPSLAPKQQGELSGNKNHL*GLFQQG Trigger: TCCCTGCTGGAAAAGACCCAAGAGGTGGTTTTTGTT...CCCAGAAAGCTCGCCCTGCTGCTTGGGAGCTAGGGAAGGAAGGGGCCAGGAGCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| 3UTR-3UTR CAA 90 bp | TGGCCCCTTCCTTCCCTAGCTCCCAAGCAGCAGGGCGAGCTTTCTGGGCTCTTTGGGCCCAGCAGAGAGTaGCAAAAGGTAGACACTTTT | + |
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Preference number: 3 (lower is better) Translates to: WPLPSLAPKQQGELSGLFGPSRE*QKVDTF Trigger: AAAAGTGTCTACCTTTTGCAACTCTCTGCTGGGCCC...AAAGAGCCCAGAAAGCTCGCCCTGCTGCTTGGGAGCTAGGGAAGGAAGGGGCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| 3UTR TCA 72 bp | CGGACTTTGGGCCCAGCAGTGTCGAGGAGATTGTTGTaGAGTGTGAGAGGTAGTGGGATGAGCACCGGGCTT | + |
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Preference number: 3 (lower is better) Translates to: RTLGPAVSRRLL*SVRGSGMSTGL Trigger: AAGCCCGGTGCTCATCCCACTACCTCTCACACTTCACAACAATCTCCTCGACACTGCTGGGCCCAAAGTCCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| 3UTR TCA 72 bp | TTCCCCAAGAACGCTTTCTGGTTTACCACTCACTCGTaGTTCTGGGTTAGAACCACCTTTCTCCTGAGGGTC | + |
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Preference number: 3 (lower is better) Translates to: FPKNAFWFTTHS*FWVRTTFLLRV Trigger: GACCCTCAGGAGAAAGGTGGTTCTAACCCAGAATCACGAGTGAGTGGTAAACCAGAAAGCGTTCTTGGGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS-3UTR TCA 90 bp | TGCTCCTGGCCCCTTCCTTCCCTAGCTCCCAAGCAGCAGGGCGAGCTTTCTGGGAGGCCGGCCCCGCTGTaGCTCCTCCTCCGCTCCGCC | + |
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Preference number: 4 (lower is better) Translates to: CSWPLPSLAPKQQGELSGRPAPL*LLLRSA Trigger: GGCGGAGCGGAGGAGGAGTCACAGCGGGGCCGGCCT...CCCAGAAAGCTCGCCCTGCTGCTTGGGAGCTAGGGAAGGAAGGGGCCAGGAGCA 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS-3UTR CCA 90 bp | TGCTCCTGGCCCCTTCCTTCCCTAGCTCCCAAGCAGCAGGGCGAGCTTTCTGGGTGGCGGGGGTCGCCATaGCCGCCGTCACCTCGGCCT | + |
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Preference number: 4 (lower is better) Translates to: CSWPLPSLAPKQQGELSGWRGSP*PPSPRP Trigger: AGGCCGAGGTGACGGCGGCCATGGCGACCCCCGCCA...CCCAGAAAGCTCGCCCTGCTGCTTGGGAGCTAGGGAAGGAAGGGGCCAGGAGCA 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS-3UTR TCA 90 bp | GTGCTCCTGGCCCCTTCCTTCCCTAGCTCCCAAGCAGCAGGGCGAGCTTTCTGGCGTCGCAGTGGCGCTTaGGCCAGGTCACGATGTCCT | + |
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Preference number: 4 (lower is better) Translates to: VLLAPSFPSSQAAGRAFWRRSGA*ARSRCP Trigger: AGGACATCGTGACCTGGCTCAAGCGCCACTGCGACG...CCAGAAAGCTCGCCCTGCTGCTTGGGAGCTAGGGAAGGAAGGGGCCAGGAGCAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS-3UTR CCA 90 bp | TGGCCCCTTCCTTCCCTAGCTCCCAAGCAGCAGGGCGAGCTTTCTGGGCTCTTTGCCAGCACGTCGCAGTaGCGCTTGAGCCAGGTCACG | + |
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Preference number: 4 (lower is better) Translates to: WPLPSLAPKQQGELSGLFASTSQ*RLSQVT Trigger: CGTGACCTGGCTCAAGCGCCACTGCGACGTGCTGGC...AAAGAGCCCAGAAAGCTCGCCCTGCTGCTTGGGAGCTAGGGAAGGAAGGGGCCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS-3UTR TCA 90 bp | CCGGGGAGGCAAAGGCAAGAGTCGGGAGGGAGAGTTACTGCACGTTTGCAGCTACCTCTTCCCCGCACCTaGAACACCTGTCCTGCGTGC | + |
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Preference number: 4 (lower is better) Translates to: PGRQRQESGGRVTARLQLPLPRT*NTCPAC Trigger: GCACGCAGGACAGGTGTTTCAGGTGCGGGGAAGAGG...TAGCTGCAAACGTGCAGTAACTCTCCCTCCCGACTCTTGCCTTTGCCTCCCCGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS-3UTR GCA 90 bp | TGGCCCCTTCCTTCCCTAGCTCCCAAGCAGCAGGGCGAGCTTTCTGGGCTCTTTCTCCCTGGAAACAGATaGGCACGAGGAAGCGGCCCT | + |
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Preference number: 4 (lower is better) Translates to: WPLPSLAPKQQGELSGLFLPGNR*ARGSGP Trigger: AGGGCCGCTTCCTCGTGCGCATCTGTTTCCAGGGAG...AAAGAGCCCAGAAAGCTCGCCCTGCTGCTTGGGAGCTAGGGAAGGAAGGGGCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS-3UTR CCA 90 bp | AGGGAGAGTTACTGCACGTTTGCAGCTAGCCTGTTCTCTGAATGCAGCCGGTCCACTCCGCCCTCCCCCTaGCGCAGCTCGATCTCGCAC | + |
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Preference number: 4 (lower is better) Translates to: RESYCTFAASLFSECSRSTPPSP*RSSISH Trigger: GTGCGAGATCGAGCTGCGCCAGGGGGAGGGCGGAGT...GGACCGGCTGCATTCAGAGAACAGGCTAGCTGCAAACGTGCAGTAACTCTCCCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS-3UTR TCA 90 bp | AGGGAGAGTTACTGCACGTTTGCAGCTAGCCTGTTCTCTGAATGCAGCCGGTCCCGATGGAGCGCAGGATaGGCGCGCCCACCACGAAGT | + |
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Preference number: 4 (lower is better) Translates to: RESYCTFAASLFSECSRSRWSAG*ARPPRS Trigger: ACTTCGTGGTGGGCGCGCTCATCCTGCGCTCCATCG...GGACCGGCTGCATTCAGAGAACAGGCTAGCTGCAAACGTGCAGTAACTCTCCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS-3UTR GCA 90 bp | AGGGAGAGTTACTGCACGTTTGCAGCTAGCCTGTTCTCTGAATGCAGCCGGTCCTGTCCTGCGTGCAGGTaGCGCTCATGTGGGTCCGGG | + |
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Preference number: 4 (lower is better) Translates to: RESYCTFAASLFSECSRSCPACR*RSCGSG Trigger: CCCGGACCCACATGAGCGGCACCTGCACGCAGGACA...GGACCGGCTGCATTCAGAGAACAGGCTAGCTGCAAACGTGCAGTAACTCTCCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS-3UTR GCA 90 bp | GTGCTCCTGGCCCCTTCCTTCCCTAGCTCCCAAGCAGCAGGGCGAGCTTTCTGGAGGCGTGTCCTCTTTTaGCACAGAGGTTGCACACGA | + |
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Preference number: 4 (lower is better) Translates to: VLLAPSFPSSQAAGRAFWRRVLF*HRGCTR Trigger: TCGTGTGCAACCTCTGTGGCAAAAGAGGACACGCCT...CCAGAAAGCTCGCCCTGCTGCTTGGGAGCTAGGGAAGGAAGGGGCCAGGAGCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS-3UTR CCA 90 bp | CCCTGGCCTGGCCTGGCCTGTTTCCCCAAGAACGCTTTCTGGTTTACCACTCACCAGGTGCCGCTCATGTaGGTCCGGGAACCACACTTA | + |
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Preference number: 4 (lower is better) Translates to: PWPGLACFPKNAFWFTTHQVPLM*VREPHL Trigger: TAAGTGTGGTTCCCGGACCCACATGAGCGGCACCTG...GTGAGTGGTAAACCAGAAAGCGTTCTTGGGGAAACAGGCCAGGCCAGGCCAGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS-3UTR GCA 90 bp | AGGGAGAGTTACTGCACGTTTGCAGCTAGCCTGTTCTCTGAATGCAGCCGGTCCAACACCTGTCCTGCGTaGAGGTGCCGCTCATGTGGG | + |
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Preference number: 4 (lower is better) Translates to: RESYCTFAASLFSECSRSNTCPA*RCRSCG Trigger: CCCACATGAGCGGCACCTGCACGCAGGACAGGTGTT...GGACCGGCTGCATTCAGAGAACAGGCTAGCTGCAAACGTGCAGTAACTCTCCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS-3UTR TCA 90 bp | AGGGAGAGTTACTGCACGTTTGCAGCTAGCCTGTTCTCTGAATGCAGCCGGTCCTGCCGGGGATCTGAATaGCCGCGTAGATGTCGTCAG | + |
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Preference number: 4 (lower is better) Translates to: RESYCTFAASLFSECSRSCRGSE*PRRCRQ Trigger: CTGACGACATCTACGCGGTCATTCAGATCCCCGGCA...GGACCGGCTGCATTCAGAGAACAGGCTAGCTGCAAACGTGCAGTAACTCTCCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS-3UTR CCA 90 bp | AGGGAGAGTTACTGCACGTTTGCAGCTAGCCTGTTCTCTGAATGCAGCCGGTCCAGAGGGTCTTCAGGCTaGACCTGCTCCGCCCCAAAA | + |
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Preference number: 4 (lower is better) Translates to: RESYCTFAASLFSECSRSRGSSG*TCSAPK Trigger: TTTTGGGGCGGAGCAGGTCCAGCCTGAAGACCCTCT...GGACCGGCTGCATTCAGAGAACAGGCTAGCTGCAAACGTGCAGTAACTCTCCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS-3UTR GCA 90 bp | AAGAGAAGACAACAGCTGAAGAAAAGCAGTTTATCGAATTTCAAGCTAACTTGGTGGCATCTTCGGTCGTaGCGGGCCTGGCGGGGGTCG | + |
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Preference number: 4 (lower is better) Translates to: KRRQQLKKSSLSNFKLTWWHLRS*RAWRGS Trigger: CGACCCCCGCCAGGCCCGGCACGACCGAAGATGCCA...CCAAGTTAGCTTGAAATTCGATAAACTGCTTTTCTTCAGCTGTTGTCTTCTCTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| 3UTR CAA 72 bp | TTCAATGAAAGACTTGATAAGAGTGTCTATCCCGCGTaGGGCCCAGTACCCTGGGCTGGAGGCATAATGACC | + |
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Preference number: 4 (lower is better) Translates to: FNERLDKSVYPA*GPVPWAGGIMT Trigger: GGTCATTATGCCTCCAGCCCAGGGTACTGGGCCCAACGCGGGATAGACACTCTTATCAAGTCTTTCATTGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS-3UTR GCA 90 bp | GGCATAGAGAGAACGTCTCTGGTAGGTTTTAGAAATATCTCCATTCAAAACGATCTGAAACACCTGTCCTaGGTGCAGGTGCCGCTCATG | + |
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Preference number: 4 (lower is better) Translates to: GIERTSLVGFRNISIQNDLKHLS*VQVPLM Trigger: CATGAGCGGCACCTGCACGCAGGACAGGTGTTTCAG...ATCGTTTTGAATGGAGATATTTCTAAAACCTACCAGAGACGTTCTCTCTATGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS-3UTR TCA 90 bp | GTTCTGAATAGTTCTTACGGGCAAAAATTCACCATTTCAAACATGCCAAAAAGGAGAGGTTGCACACGATaGCCTTCCGGCAGTAAGGGC | + |
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Preference number: 4 (lower is better) Translates to: VLNSSYGQKFTISNMPKRRGCTR*PSGSKG Trigger: GCCCTTACTGCCGGAAGGTCATCGTGTGCAACCTCT...CCTTTTTGGCATGTTTGAAATGGTGAATTTTTGCCCGTAAGAACTATTCAGAAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS-3UTR CCA 90 bp | GTTCTGAATAGTTCTTACGGGCAAAAATTCACCATTTCAAACATGCCAAAAAGGGCACTTTCGTCTCCCTaGAAACAGATGCGCACGAGG | + |
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Preference number: 4 (lower is better) Translates to: VLNSSYGQKFTISNMPKRALSSP*KQMRTR Trigger: CCTCGTGCGCATCTGTTTCCAGGGAGACGAAAGTGC...CCTTTTTGGCATGTTTGAAATGGTGAATTTTTGCCCGTAAGAACTATTCAGAAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS CCA 90 bp | TACCCGGGCCGGCAGCCGGTGGCTCGTCCTGGAGCGGTCGCTCGGTaGCATCTTCGGTCGTGCCGGGCCTGGCGGGGGTCGCCATGGCCG | + |
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Preference number: 5 (lower is better) Translates to: YPGRQPVARPGAVAR*HLRSCRAWRGSPWP Trigger: CGGCCATGGCGACCCCCGCCAGGCCCGGCACGACCGAAGATGCCACCGAGCGACCGCTCCAGGACGAGCCACCGGCTGCCGGCCCGGGTA 77% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS GCA 90 bp | CCGGTGGCTCGTCCTGGAGCGGTCGCTCGGTGGCATCTTCGGTCGTaGCGGGCCTGGCGGGGGTCGCCATGGCCGCCGTCACCTCGGCCT | + |
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Preference number: 5 (lower is better) Translates to: PVARPGAVARWHLRS*RAWRGSPWPPSPRP Trigger: AGGCCGAGGTGACGGCGGCCATGGCGACCCCCGCCAGGCCCGGCACGACCGAAGATGCCACCGAGCGACCGCTCCAGGACGAGCCACCGG 76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS CCA 90 bp | ACGAGGAAGCGGCCCTTACCCGGGCCGGCAGCCGGTGGCTCGTCCTaGAGCGGTCGCTCGGTGGCATCTTCGGTCGTGCCGGGCCTGGCG | + |
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Preference number: 5 (lower is better) Translates to: TRKRPLPGPAAGGSS*SGRSVASSVVPGLA Trigger: CGCCAGGCCCGGCACGACCGAAGATGCCACCGAGCGACCGCTCCAGGACGAGCCACCGGCTGCCGGCCCGGGTAAGGGCCGCTTCCTCGT 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS CCA 90 bp | GCTCGGTGGCATCTTCGGTCGTGCCGGGCCTGGCGGGGGTCGCCATaGCCGCCGTCACCTCGGCCTTCTTCCTTCGACTCGGGTCTCCCG | + |
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Preference number: 5 (lower is better) Translates to: ARWHLRSCRAWRGSP*PPSPRPSSFDSGLP Trigger: CGGGAGACCCGAGTCGAAGGAAGAAGGCCGAGGTGACGGCGGCCATGGCGACCCCCGCCAGGCCCGGCACGACCGAAGATGCCACCGAGC 72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS CCA 90 bp | CGTCCTGGAGCGGTCGCTCGGTGGCATCTTCGGTCGTGCCGGGCCTaGCGGGGGTCGCCATGGCCGCCGTCACCTCGGCCTTCTTCCTTC | + |
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Preference number: 5 (lower is better) Translates to: RPGAVARWHLRSCRA*RGSPWPPSPRPSSF Trigger: GAAGGAAGAAGGCCGAGGTGACGGCGGCCATGGCGACCCCCGCCAGGCCCGGCACGACCGAAGATGCCACCGAGCGACCGCTCCAGGACG 72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS CCA 90 bp | ACAGATGCGCACGAGGAAGCGGCCCTTACCCGGGCCGGCAGCCGGTaGCTCGTCCTGGAGCGGTCGCTCGGTGGCATCTTCGGTCGTGCC | + |
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Preference number: 5 (lower is better) Translates to: TDAHEEAALTRAGSR*LVLERSLGGIFGRA Trigger: GGCACGACCGAAGATGCCACCGAGCGACCGCTCCAGGACGAGCCACCGGCTGCCGGCCCGGGTAAGGGCCGCTTCCTCGTGCGCATCTGT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS TCA 90 bp | GCCGCCGCGGCTCGCGGAAGTCGCCCTTCTTCTCCGCCAGGTTCTTaGCCACCTGGGCCCAGCCCATCTTCTCGCGGACGCCCTCGGGTT | + |
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Preference number: 5 (lower is better) Translates to: AAAARGSRPSSPPGS*PPGPSPSSRGRPRV Trigger: AACCCGAGGGCGTCCGCGAGAAGATGGGCTGGGCCCAGGTGGTCAAGAACCTGGCGGAGAAGAAGGGCGACTTCCGCGAGCCGCGGCGGC 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS GCA 90 bp | CGAAGTCCCGGGTCGGACAGGCACTTTCGTCTCCCTGGAAACAGATaGGCACGAGGAAGCGGCCCTTACCCGGGCCGGCAGCCGGTGGCT | + |
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Preference number: 5 (lower is better) Translates to: RSPGSDRHFRLPGNR*ARGSGPYPGRQPVA Trigger: AGCCACCGGCTGCCGGCCCGGGTAAGGGCCGCTTCCTCGTGCGCATCTGTTTCCAGGGAGACGAAAGTGCCTGTCCGACCCGGGACTTCG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS CCA 90 bp | GGCTCGCGGAAGTCGCCCTTCTTCTCCGCCAGGTTCTTGACCACCTaGGCCCAGCCCATCTTCTCGCGGACGCCCTCGGGTTCCTCGACG | + |
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Preference number: 5 (lower is better) Translates to: GSRKSPFFSARFLTT*AQPIFSRTPSGSST Trigger: CGTCGAGGAACCCGAGGGCGTCCGCGAGAAGATGGGCTGGGCCCAGGTGGTCAAGAACCTGGCGGAGAAGAAGGGCGACTTCCGCGAGCC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS CCA 90 bp | GCGCCCACCACGAAGTCCCGGGTCGGACAGGCACTTTCGTCTCCCTaGAAACAGATGCGCACGAGGAAGCGGCCCTTACCCGGGCCGGCA | + |
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Preference number: 5 (lower is better) Translates to: APTTKSRVGQALSSP*KQMRTRKRPLPGPA Trigger: TGCCGGCCCGGGTAAGGGCCGCTTCCTCGTGCGCATCTGTTTCCAGGGAGACGAAAGTGCCTGTCCGACCCGGGACTTCGTGGTGGGCGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS CCA 90 bp | CCGAACCTGTCGGTCACTTTCACGGGCACGGCCAGCACGTCGCAGTaGCGCTTGAGCCAGGTCACGATGTCCTCCACGTCCACGGTCTCG | + |
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Preference number: 5 (lower is better) Translates to: PNLSVTFTGTASTSQ*RLSQVTMSSTSTVS Trigger: CGAGACCGTGGACGTGGAGGACATCGTGACCTGGCTCAAGCGCCACTGCGACGTGCTGGCCGTGCCCGTGAAAGTGACCGACAGGTTCGG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS-3UTR CAA 90 bp | GTGCTCCTGGCCCCTTCCTTCCCTAGCTCCCAAGCAGCAGGGCGAGCTTTCTGGTTCTCCGCCAGGTTCTaGACCACCTGGGCCCAGCCC | + |
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Preference number: 5 (lower is better) Translates to: VLLAPSFPSSQAAGRAFWFSARF*TTWAQP Trigger: GGGCTGGGCCCAGGTGGTCAAGAACCTGGCGGAGAA...CCAGAAAGCTCGCCCTGCTGCTTGGGAGCTAGGGAAGGAAGGGGCCAGGAGCAC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS TCA 90 bp | TGTCGGTCACTTTCACGGGCACGGCCAGCACGTCGCAGTGGCGCTTaGGCCAGGTCACGATGTCCTCCACGTCCACGGTCTCGTTCCGGA | + |
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Preference number: 5 (lower is better) Translates to: CRSLSRARPARRSGA*ARSRCPPRPRSRSG Trigger: TCCGGAACGAGACCGTGGACGTGGAGGACATCGTGACCTGGCTCAAGCGCCACTGCGACGTGCTGGCCGTGCCCGTGAAAGTGACCGACA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS TCA 90 bp | CGGATCGGAAACTCACGTCGAACTCGCGGCTGCCGGGGATCTGAATaGCCGCGTAGATGTCGTCAGGGTCCATGCCGATGGAGCGCAGGA | + |
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Preference number: 5 (lower is better) Translates to: RIGNSRRTRGCRGSE*PRRCRQGPCRWSAG Trigger: TCCTGCGCTCCATCGGCATGGACCCTGACGACATCTACGCGGTCATTCAGATCCCCGGCAGCCGCGAGTTCGACGTGAGTTTCCGATCCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS CCA 90 bp | TCCCCGCACCTGAAACACCTGTCCTGCGTGCAGGTGCCGCTCATGTaGGTCCGGGAACCACACTTAAAGCACGTCTTGGGCTGCCCCTTG | + |
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Preference number: 5 (lower is better) Translates to: SPHLKHLSCVQVPLM*VREPHLKHVLGCPL Trigger: CAAGGGGCAGCCCAAGACGTGCTTTAAGTGTGGTTCCCGGACCCACATGAGCGGCACCTGCACGCAGGACAGGTGTTTCAGGTGCGGGGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS-3UTR CAA 90 bp | TGGCCCCTTCCTTCCCTAGCTCCCAAGCAGCAGGGCGAGCTTTCTGGGCTCTTTACGTCGCAGTGGCGCTaGAGCCAGGTCACGATGTCC | + |
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Preference number: 5 (lower is better) Translates to: WPLPSLAPKQQGELSGLFTSQWR*SQVTMS Trigger: GGACATCGTGACCTGGCTCAAGCGCCACTGCGACGT...AAAGAGCCCAGAAAGCTCGCCCTGCTGCTTGGGAGCTAGGGAAGGAAGGGGCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS-3UTR CAA 90 bp | GTGCTCCTGGCCCCTTCCTTCCCTAGCTCCCAAGCAGCAGGGCGAGCTTTCTGGAGCTCGATCTCGCACTaGTACTCCCCGGTCCAGATC | + |
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Preference number: 5 (lower is better) Translates to: VLLAPSFPSSQAAGRAFWSSISH*YSPVQI Trigger: GATCTGGACCGGGGAGTACAAGTGCGAGATCGAGCT...CCAGAAAGCTCGCCCTGCTGCTTGGGAGCTAGGGAAGGAAGGGGCCAGGAGCAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS-3UTR CAA 90 bp | GTGCTCCTGGCCCCTTCCTTCCCTAGCTCCCAAGCAGCAGGGCGAGCTTTCTGGCACTTAAAGCACGTCTaGGGCTGCCCCTTGTACCAG | + |
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Preference number: 5 (lower is better) Translates to: VLLAPSFPSSQAAGRAFWHLKHV*GCPLYQ Trigger: CTGGTACAAGGGGCAGCCCAAGACGTGCTTTAAGTG...CCAGAAAGCTCGCCCTGCTGCTTGGGAGCTAGGGAAGGAAGGGGCCAGGAGCAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS-3UTR CAA 90 bp | TGCTCCTGGCCCCTTCCTTCCCTAGCTCCCAAGCAGCAGGGCGAGCTTTCTGGGAAGGCGTGTCCTCTTTaGCCACAGAGGTTGCACACG | + |
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Preference number: 5 (lower is better) Translates to: CSWPLPSLAPKQQGELSGKACPL*PQRLHT Trigger: CGTGTGCAACCTCTGTGGCAAAAGAGGACACGCCTT...CCCAGAAAGCTCGCCCTGCTGCTTGGGAGCTAGGGAAGGAAGGGGCCAGGAGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS GCA 90 bp | GTGCCCCGCCACGCTGGTGAGCTGAGCTGTCACGGAATTGTGAACTaGTTTGGGACACTGGGCAAAGGCGTGTCCTCTTTTGCCACAGAG | + |
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Preference number: 5 (lower is better) Translates to: VPRHAGELSCHGIVN*FGTLGKGVSSFATE Trigger: CTCTGTGGCAAAAGAGGACACGCCTTTGCCCAGTGTCCCAAAGCAGTTCACAATTCCGTGACAGCTCAGCTCACCAGCGTGGCGGGGCAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS-3UTR CAA 90 bp | CCCTGGCCTGGCCTGGCCTGTTTCCCCAAGAACGCTTTCTGGTTTACCACTCACCTTTTGCCACAGAGGTaGCACACGATGACCTTCCGG | + |
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Preference number: 5 (lower is better) Translates to: PWPGLACFPKNAFWFTTHLLPQR*HTMTFR Trigger: CCGGAAGGTCATCGTGTGCAACCTCTGTGGCAAAAG...GTGAGTGGTAAACCAGAAAGCGTTCTTGGGGAAACAGGCCAGGCCAGGCCAGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS CCA 72 bp | GCGGTCGCTCGGTGGCATCTTCGGTCGTGCCGGGCCTaGCGGGGGTCGCCATGGCCGCCGTCACCTCGGCCT | + |
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Preference number: 6 (lower is better) Translates to: AVARWHLRSCRA*RGSPWPPSPRP Trigger: AGGCCGAGGTGACGGCGGCCATGGCGACCCCCGCCAGGCCCGGCACGACCGAAGATGCCACCGAGCGACCGC 76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS CCA 72 bp | CGGCAGCCGGTGGCTCGTCCTGGAGCGGTCGCTCGGTaGCATCTTCGGTCGTGCCGGGCCTGGCGGGGGTCG | + |
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Preference number: 6 (lower is better) Translates to: RQPVARPGAVAR*HLRSCRAWRGS Trigger: CGACCCCCGCCAGGCCCGGCACGACCGAAGATGCCACCGAGCGACCGCTCCAGGACGAGCCACCGGCTGCCG 76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS GCA 72 bp | CGTCCTGGAGCGGTCGCTCGGTGGCATCTTCGGTCGTaGCGGGCCTGGCGGGGGTCGCCATGGCCGCCGTCA | + |
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Preference number: 6 (lower is better) Translates to: RPGAVARWHLRS*RAWRGSPWPPS Trigger: TGACGGCGGCCATGGCGACCCCCGCCAGGCCCGGCACGACCGAAGATGCCACCGAGCGACCGCTCCAGGACG 75% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS CCA 72 bp | CACGAGGAAGCGGCCCTTACCCGGGCCGGCAGCCGGTaGCTCGTCCTGGAGCGGTCGCTCGGTGGCATCTTC | + |
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Preference number: 6 (lower is better) Translates to: HEEAALTRAGSR*LVLERSLGGIF Trigger: GAAGATGCCACCGAGCGACCGCTCCAGGACGAGCCACCGGCTGCCGGCCCGGGTAAGGGCCGCTTCCTCGTG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS CAA 90 bp | CGCCGCCGCGGCTCGCGGAAGTCGCCCTTCTTCTCCGCCAGGTTCTaGACCACCTGGGCCCAGCCCATCTTCTCGCGGACGCCCTCGGGT | + |
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Preference number: 6 (lower is better) Translates to: RRRGSRKSPFFSARF*TTWAQPIFSRTPSG Trigger: ACCCGAGGGCGTCCGCGAGAAGATGGGCTGGGCCCAGGTGGTCAAGAACCTGGCGGAGAAGAAGGGCGACTTCCGCGAGCCGCGGCGGCG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS CCA 72 bp | CATCTTCGGTCGTGCCGGGCCTGGCGGGGGTCGCCATaGCCGCCGTCACCTCGGCCTTCTTCCTTCGACTCG | + |
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Preference number: 6 (lower is better) Translates to: HLRSCRAWRGSP*PPSPRPSSFDS Trigger: CGAGTCGAAGGAAGAAGGCCGAGGTGACGGCGGCCATGGCGACCCCCGCCAGGCCCGGCACGACCGAAGATG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS TCA 72 bp | TCCCGCGCCGCTCGCGCTCTTTTTCCTGTAAGCGTCTaGCGCCTCACCCGTAGGGTCTCTGCGGCGGCCCTT | + |
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Preference number: 6 (lower is better) Translates to: SRAARALFPVSV*RLTRRVSAAAL Trigger: AAGGGCCGCCGCAGAGACCCTACGGGTGAGGCGTCAGACGCTTACAGGAAAAAGAGCGCGAGCGGCGCGGGA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS TCA 72 bp | AGATGTCGTCAGGGTCCATGCCGATGGAGCGCAGGATaGGCGCGCCCACCACGAAGTCCCGGGTCGGACAGG | + |
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Preference number: 6 (lower is better) Translates to: RCRQGPCRWSAG*ARPPRSPGSDR Trigger: CCTGTCCGACCCGGGACTTCGTGGTGGGCGCGCTCATCCTGCGCTCCATCGGCATGGACCCTGACGACATCT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS GCA 72 bp | GGGTCGGACAGGCACTTTCGTCTCCCTGGAAACAGATaGGCACGAGGAAGCGGCCCTTACCCGGGCCGGCAG | + |
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Preference number: 6 (lower is better) Translates to: GSDRHFRLPGNR*ARGSGPYPGRQ Trigger: CTGCCGGCCCGGGTAAGGGCCGCTTCCTCGTGCGCATCTGTTTCCAGGGAGACGAAAGTGCCTGTCCGACCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS CAA 72 bp | GGCTCGCGGAAGTCGCCCTTCTTCTCCGCCAGGTTCTaGACCACCTGGGCCCAGCCCATCTTCTCGCGGACG | + |
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Preference number: 6 (lower is better) Translates to: GSRKSPFFSARF*TTWAQPIFSRT Trigger: CGTCCGCGAGAAGATGGGCTGGGCCCAGGTGGTCAAGAACCTGGCGGAGAAGAAGGGCGACTTCCGCGAGCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS CAA 72 bp | ACTCCGCCCTCCCCCTGGCGCAGCTCGATCTCGCACTaGTACTCCCCGGTCCAGATCCCGAACCTGTCGGTC | + |
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Preference number: 6 (lower is better) Translates to: TPPSPWRSSISH*YSPVQIPNLSV Trigger: GACCGACAGGTTCGGGATCTGGACCGGGGAGTACAAGTGCGAGATCGAGCTGCGCCAGGGGGAGGGCGGAGT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS CAA 90 bp | CTGTCGGTCACTTTCACGGGCACGGCCAGCACGTCGCAGTGGCGCTaGAGCCAGGTCACGATGTCCTCCACGTCCACGGTCTCGTTCCGG | + |
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Preference number: 6 (lower is better) Translates to: LSVTFTGTASTSQWR*SQVTMSSTSTVSFR Trigger: CCGGAACGAGACCGTGGACGTGGAGGACATCGTGACCTGGCTCAAGCGCCACTGCGACGTGCTGGCCGTGCCCGTGAAAGTGACCGACAG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS TCA 72 bp | CTTTCACGGGCACGGCCAGCACGTCGCAGTGGCGCTTaGGCCAGGTCACGATGTCCTCCACGTCCACGGTCT | + |
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Preference number: 6 (lower is better) Translates to: LSRARPARRSGA*ARSRCPPRPRS Trigger: AGACCGTGGACGTGGAGGACATCGTGACCTGGCTCAAGCGCCACTGCGACGTGCTGGCCGTGCCCGTGAAAG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS CCA 72 bp | AAGTCGCCCTTCTTCTCCGCCAGGTTCTTGACCACCTaGGCCCAGCCCATCTTCTCGCGGACGCCCTCGGGT | + |
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Preference number: 6 (lower is better) Translates to: KSPFFSARFLTT*AQPIFSRTPSG Trigger: ACCCGAGGGCGTCCGCGAGAAGATGGGCTGGGCCCAGGTGGTCAAGAACCTGGCGGAGAAGAAGGGCGACTT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS CCA 72 bp | TCGGTCACTTTCACGGGCACGGCCAGCACGTCGCAGTaGCGCTTGAGCCAGGTCACGATGTCCTCCACGTCC | + |
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Preference number: 6 (lower is better) Translates to: SVTFTGTASTSQ*RLSQVTMSSTS Trigger: GGACGTGGAGGACATCGTGACCTGGCTCAAGCGCCACTGCGACGTGCTGGCCGTGCCCGTGAAAGTGACCGA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS CAA 72 bp | ACTTTCACGGGCACGGCCAGCACGTCGCAGTGGCGCTaGAGCCAGGTCACGATGTCCTCCACGTCCACGGTC | + |
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Preference number: 6 (lower is better) Translates to: TFTGTASTSQWR*SQVTMSSTSTV Trigger: GACCGTGGACGTGGAGGACATCGTGACCTGGCTCAAGCGCCACTGCGACGTGCTGGCCGTGCCCGTGAAAGT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS TCA 72 bp | GGCAGTAAGGGCTCAGGTGCCCCTCTTCCCCGCACCTaGAACACCTGTCCTGCGTGCAGGTGCCGCTCATGT | + |
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Preference number: 6 (lower is better) Translates to: GSKGSGAPLPRT*NTCPACRCRSC Trigger: ACATGAGCGGCACCTGCACGCAGGACAGGTGTTTCAGGTGCGGGGAAGAGGGGCACCTGAGCCCTTACTGCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS CCA 72 bp | ACGAAGTCCCGGGTCGGACAGGCACTTTCGTCTCCCTaGAAACAGATGCGCACGAGGAAGCGGCCCTTACCC | + |
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Preference number: 6 (lower is better) Translates to: TKSRVGQALSSP*KQMRTRKRPLP Trigger: GGGTAAGGGCCGCTTCCTCGTGCGCATCTGTTTCCAGGGAGACGAAAGTGCCTGTCCGACCCGGGACTTCGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS TCA 72 bp | AACTCACGTCGAACTCGCGGCTGCCGGGGATCTGAATaGCCGCGTAGATGTCGTCAGGGTCCATGCCGATGG | + |
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Preference number: 6 (lower is better) Translates to: NSRRTRGCRGSE*PRRCRQGPCRW Trigger: CCATCGGCATGGACCCTGACGACATCTACGCGGTCATTCAGATCCCCGGCAGCCGCGAGTTCGACGTGAGTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS CCA 72 bp | CTGAAACACCTGTCCTGCGTGCAGGTGCCGCTCATGTaGGTCCGGGAACCACACTTAAAGCACGTCTTGGGC | + |
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Preference number: 6 (lower is better) Translates to: LKHLSCVQVPLM*VREPHLKHVLG Trigger: GCCCAAGACGTGCTTTAAGTGTGGTTCCCGGACCCACATGAGCGGCACCTGCACGCAGGACAGGTGTTTCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS TCA 72 bp | AGGCGTGTCCTCTTTTGCCACAGAGGTTGCACACGATaGCCTTCCGGCAGTAAGGGCTCAGGTGCCCCTCTT | + |
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Preference number: 6 (lower is better) Translates to: RRVLFCHRGCTR*PSGSKGSGAPL Trigger: AAGAGGGGCACCTGAGCCCTTACTGCCGGAAGGTCATCGTGTGCAACCTCTGTGGCAAAAGAGGACACGCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS CAA 72 bp | ACTGCTTTGGGACACTGGGCAAAGGCGTGTCCTCTTTaGCCACAGAGGTTGCACACGATGACCTTCCGGCAG | + |
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Preference number: 6 (lower is better) Translates to: TALGHWAKACPL*PQRLHTMTFRQ Trigger: CTGCCGGAAGGTCATCGTGTGCAACCTCTGTGGCAAAAGAGGACACGCCTTTGCCCAGTGTCCCAAAGCAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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| CDS GCA 72 bp | CACGCTGGTGAGCTGAGCTGTCACGGAATTGTGAACTaGTTTGGGACACTGGGCAAAGGCGTGTCCTCTTTT | + |
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Preference number: 6 (lower is better) Translates to: HAGELSCHGIVN*FGTLGKGVSSF Trigger: AAAAGAGGACACGCCTTTGCCCAGTGTCCCAAAGCAGTTCACAATTCCGTGACAGCTCAGCTCACCAGCGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099207.5 |
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