Pregenerated sensors for ZCCHC13 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031330Ensembl transcript IDs: ENSMUST00000033692.9
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | TTACTTCCTCAAAATGTTCTTGCCCCCACCACCAAGGAAGTAGTTTCTCTTCTTACGATGTTCCAAGCTTaGTGTAATTTTTCACTATCA | + |
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Preference number: 2 (lower is better) Translates to: LLPQNVLAPTTKEVVSLLTMFQA*CNFSLS Trigger: TGATAGTGAAAAATTACAGCAAGCTTGGAACATCGT...AAGAAGAGAAACTACTTCCTTGGTGGTGGGGGCAAGAACATTTTGAGGAAGTAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000033692.9 |
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| CDS-3UTR GCA 90 bp | CAATTCAAAAATGGCTGTGCCCTATCTGAACTTCCTCATGGCAACCAAATAGCAGATGACCAGGCTGACTaGAGATGTAACAGCACTGCT | + |
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Preference number: 4 (lower is better) Translates to: QFKNGCALSELPHGNQIADDQAD*RCNSTA Trigger: AGCAGTGCTGTTACATCTGCAGTCAGCCTGGTCATC...TGCTATTTGGTTGCCATGAGGAAGTTCAGATAGGGCACAGCCATTTTTGAATTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033692.9 |
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| CDS-3UTR CCA 90 bp | TTACTTCCTCAAAATGTTCTTGCCCCCACCACCAAGGAAGTAGTTTCTCTTCTTTGGGTACAATCTTTCTaGATGTGCCCAAATTCACCA | + |
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Preference number: 4 (lower is better) Translates to: LLPQNVLAPTTKEVVSLLWVQSF*MCPNSP Trigger: TGGTGAATTTGGGCACATCCAGAAAGATTGTACCCA...AAGAAGAGAAACTACTTCCTTGGTGGTGGGGGCAAGAACATTTTGAGGAAGTAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033692.9 |
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| CDS GCA 90 bp | GACCAGTTTCACCACAGCGATAACAAACATCGGACTGGTTGGCGGTaGTGCACTGGGGACCTCTGGTACGACCTCTTGCTGTTCGCCCTC | + |
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Preference number: 5 (lower is better) Translates to: DQFHHSDNKHRTGWR*CTGDLWYDLLLFAL Trigger: GAGGGCGAACAGCAAGAGGTCGTACCAGAGGTCCCCAGTGCAGCACCGCCAACCAGTCCGATGTTTGTTATCGCTGTGGTGAAACTGGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033692.9 |
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| CDS CCA 90 bp | CGTAGTGACCAGTTTCACCACAGCGATAACAAACATCGGACTGGTTaGCGGTGCTGCACTGGGGACCTCTGGTACGACCTCTTGCTGTTC | + |
|
Preference number: 5 (lower is better) Translates to: RSDQFHHSDNKHRTG*RCCTGDLWYDLLLF Trigger: GAACAGCAAGAGGTCGTACCAGAGGTCCCCAGTGCAGCACCGCCAACCAGTCCGATGTTTGTTATCGCTGTGGTGAAACTGGTCACTACG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033692.9 |
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| CDS-3UTR CAA 90 bp | AATGTTACTTCCTCAAAATGTTCTTGCCCCCACCACCAAGGAAGTAGTTTCTCTCCAGAGTGTCCACACTaGAAGCAACTTTTACTGCTC | + |
|
Preference number: 5 (lower is better) Translates to: NVTSSKCSCPHHQGSSFSPECPH*KQLLLL Trigger: GAGCAGTAAAAGTTGCTTCAAGTGTGGACACTCTGG...AGAGAAACTACTTCCTTGGTGGTGGGGGCAAGAACATTTTGAGGAAGTAACATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000033692.9 |
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| CDS GCA 72 bp | GGCGGTGCTGCACTGGGGACCTCTGGTACGACCTCTTaGTGTTCGCCCTCGGGTTCCTCCCTTAGGACACTC | + |
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Preference number: 6 (lower is better) Translates to: GGAALGTSGTTS*CSPSGSSLRTL Trigger: GAGTGTCCTAAGGGAGGAACCCGAGGGCGAACAGCAAGAGGTCGTACCAGAGGTCCCCAGTGCAGCACCGCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033692.9 |
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| CDS CCA 72 bp | CATCGGACTGGTTGGCGGTGCTGCACTGGGGACCTCTaGTACGACCTCTTGCTGTTCGCCCTCGGGTTCCTC | + |
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Preference number: 6 (lower is better) Translates to: HRTGWRCCTGDL*YDLLLFALGFL Trigger: GAGGAACCCGAGGGCGAACAGCAAGAGGTCGTACCAGAGGTCCCCAGTGCAGCACCGCCAACCAGTCCGATG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033692.9 |
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| CDS GCA 72 bp | CACCACAGCGATAACAAACATCGGACTGGTTGGCGGTaGTGCACTGGGGACCTCTGGTACGACCTCTTGCTG | + |
|
Preference number: 6 (lower is better) Translates to: HHSDNKHRTGWR*CTGDLWYDLLL Trigger: CAGCAAGAGGTCGTACCAGAGGTCCCCAGTGCAGCACCGCCAACCAGTCCGATGTTTGTTATCGCTGTGGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033692.9 |
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| CDS CCA 72 bp | CAGTTTCACCACAGCGATAACAAACATCGGACTGGTTaGCGGTGCTGCACTGGGGACCTCTGGTACGACCTC | + |
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Preference number: 6 (lower is better) Translates to: QFHHSDNKHRTG*RCCTGDLWYDL Trigger: GAGGTCGTACCAGAGGTCCCCAGTGCAGCACCGCCAACCAGTCCGATGTTTGTTATCGCTGTGGTGAAACTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033692.9 |
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