Pregenerated sensors for ZCCHC10 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000018239Ensembl transcript IDs: ENSMUST00000018383.10, ENSMUST00000141585.2
Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGCATGGTGGCACATATCTTTAGTCCCAACATTAGAAGATCTCTCTaGAATCAAGGCCAGTCTCCTCTACATATCAAATTCAAGGCCAGC | + |
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Preference number: 1 (lower is better) Translates to: SMVAHIFSPNIRRSL*NQGQSPLHIKFKAS Trigger: GCTGGCCTTGAATTTGATATGTAGAGGAGACTGGCCTTGATTTCAGAGAGATCTTCTAATGTTGGGACTAAAGATATGTGCCACCATGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018383.10 |
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| 3UTR TCA 90 bp | AAATCTCACATAATAAACACAGGCAAAAGAGAACAAGAAACTTCTTaGTATTCTGATACAGTACAGTCAAAGACTGTCCCATACACACTG | + |
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Preference number: 1 (lower is better) Translates to: KSHIINTGKREQETS*YSDTVQSKTVPYTL Trigger: CAGTGTGTATGGGACAGTCTTTGACTGTACTGTATCAGAATATCAAGAAGTTTCTTGTTCTCTTTTGCCTGTGTTTATTATGTGAGATTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018383.10 |
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| 3UTR-3UTR GCA 90 bp | AAAGACTGTCCCATACACACTGTAACATATACCCACATAAAGCATTCATTTCAACCTGGGAGTCACAGGTaGTTTGGGTCCACCGTCCCG | + |
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Preference number: 2 (lower is better) Translates to: KDCPIHTVTYTHIKHSFQPGSHR*FGSTVP Trigger: CGGGACGGTGGACCCAAAGCACCTGTGACTCCCAGG...TTGAAATGAATGCTTTATGTGGGTATATGTTACAGTGTGTATGGGACAGTCTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018383.10 |
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| 3UTR-3UTR CCA 90 bp | CTGATACAGTACAGTCAAAGACTGTCCCATACACACTGTAACATATACCCACATGGTTTTCAGTTCCCCTaGGAGTCACAGGTGCTTTGG | + |
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Preference number: 2 (lower is better) Translates to: LIQYSQRLSHTHCNIYPHGFQFP*ESQVLW Trigger: CCAAAGCACCTGTGACTCCCAGGGGAACTGAAAACC...ATGTGGGTATATGTTACAGTGTGTATGGGACAGTCTTTGACTGTACTGTATCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018383.10 |
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| 3UTR-3UTR CAA 90 bp | CTGATACAGTACAGTCAAAGACTGTCCCATACACACTGTAACATATACCCACATGTCTGGCTTGCTTGCTaGAGCAGGTTTTCAGTTCCC | + |
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Preference number: 3 (lower is better) Translates to: LIQYSQRLSHTHCNIYPHVWLAC*SRFSVP Trigger: GGGAACTGAAAACCTGCTCAAGCAAGCAAGCCAGAC...ATGTGGGTATATGTTACAGTGTGTATGGGACAGTCTTTGACTGTACTGTATCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018383.10 |
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| 3UTR-3UTR CAA 90 bp | CTTGATATTCTGATACAGTACAGTCAAAGACTGTCCCATACACACTGTAACATAGGCCGTCTGGCTTGCTaGCTTGAGCAGGTTTTCAGT | + |
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Preference number: 3 (lower is better) Translates to: LDILIQYSQRLSHTHCNIGRLAC*LEQVFS Trigger: ACTGAAAACCTGCTCAAGCAAGCAAGCCAGACGGCC...TATGTTACAGTGTGTATGGGACAGTCTTTGACTGTACTGTATCAGAATATCAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018383.10 |
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| 3UTR TCA 72 bp | ATAATAAACACAGGCAAAAGAGAACAAGAAACTTCTTaGTATTCTGATACAGTACAGTCAAAGACTGTCCCA | + |
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Preference number: 3 (lower is better) Translates to: IINTGKREQETS*YSDTVQSKTVP Trigger: TGGGACAGTCTTTGACTGTACTGTATCAGAATATCAAGAAGTTTCTTGTTCTCTTTTGCCTGTGTTTATTAT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018383.10 |
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| CDS-3UTR CCA 90 bp | GAAATCAAGGCCAGTCTCCTCTACATATCAAATTCAAGGCCAGCTAGACCTACATGCTGCTGGACGAGCTaGAGTCCGAGTCCGAGGAGG | + |
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Preference number: 4 (lower is better) Translates to: EIKASLLYISNSRPARPTCCWTS*SPSPRR Trigger: CCTCCTCGGACTCGGACTCCAGCTCGTCCAGCAGCA...TGTAGGTCTAGCTGGCCTTGAATTTGATATGTAGAGGAGACTGGCCTTGATTTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018383.10 |
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| CDS-3UTR GCA 90 bp | AAGATCTCTCTGAAATCAAGGCCAGTCTCCTCTACATATCAAATTCAAGGCCAGTGCTGCTGCTGCTGCTaGTGGACGAGCTGGAGTCCG | + |
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Preference number: 4 (lower is better) Translates to: KISLKSRPVSSTYQIQGQCCCCC*WTSWSP Trigger: CGGACTCCAGCTCGTCCAGCAGCAGCAGCAGCAGCA...CTGGCCTTGAATTTGATATGTAGAGGAGACTGGCCTTGATTTCAGAGAGATCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018383.10 |
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| CDS-3UTR GCA 90 bp | CTGAAATCAAGGCCAGTCTCCTCTACATATCAAATTCAAGGCCAGCTAGACCTAAGCTGCTCTCAGAACTaGTGCTGCTGCTGCTGCTGG | + |
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Preference number: 4 (lower is better) Translates to: LKSRPVSSTYQIQGQLDLSCSQN*CCCCCW Trigger: CCAGCAGCAGCAGCAGCAGCAGTTCTGAGAGCAGCT...TAGGTCTAGCTGGCCTTGAATTTGATATGTAGAGGAGACTGGCCTTGATTTCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018383.10 |
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| CDS-3UTR TCA 90 bp | CTGATACAGTACAGTCAAAGACTGTCCCATACACACTGTAACATATACCCACATCTTTCCTTCGAGCTATaGGCCGATGCATGGGAGTCG | + |
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Preference number: 4 (lower is better) Translates to: LIQYSQRLSHTHCNIYPHLSFEL*ADAWES Trigger: CGACTCCCATGCATCGGCTCATAGCTCGAAGGAAAG...ATGTGGGTATATGTTACAGTGTGTATGGGACAGTCTTTGACTGTACTGTATCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018383.10 |
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| CDS-3UTR GCA 90 bp | TACAGTCAAAGACTGTCCCATACACACTGTAACATATACCCACATAAAGCATTCTCTCAGAACTGCTGCTaGTGCTGCTGCTGGACGAGC | + |
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Preference number: 4 (lower is better) Translates to: YSQRLSHTHCNIYPHKAFSQNCC*CCCWTS Trigger: GCTCGTCCAGCAGCAGCAGCAGCAGCAGTTCTGAGA...GAATGCTTTATGTGGGTATATGTTACAGTGTGTATGGGACAGTCTTTGACTGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018383.10 |
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| CDS-3UTR GCA 90 bp | AAAGACTGTCCCATACACACTGTAACATATACCCACATAAAGCATTCATTTCAACAGAACTGCTGCTGCTaGTGCTGCTGGACGAGCTGG | + |
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Preference number: 4 (lower is better) Translates to: KDCPIHTVTYTHIKHSFQQNCCC*CCWTSW Trigger: CCAGCTCGTCCAGCAGCAGCAGCAGCAGCAGTTCTG...TTGAAATGAATGCTTTATGTGGGTATATGTTACAGTGTGTATGGGACAGTCTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018383.10 |
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| CDS-3UTR GCA 90 bp | CTTGATATTCTGATACAGTACAGTCAAAGACTGTCCCATACACACTGTAACATATGCTCTCAGAACTGCTaGTGCTGCTGCTGCTGGACG | + |
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Preference number: 4 (lower is better) Translates to: LDILIQYSQRLSHTHCNICSQNC*CCCCWT Trigger: CGTCCAGCAGCAGCAGCAGCAGCAGTTCTGAGAGCA...TATGTTACAGTGTGTATGGGACAGTCTTTGACTGTACTGTATCAGAATATCAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018383.10 |
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| CDS-3UTR GCA 90 bp | AAAGACTGTCCCATACACACTGTAACATATACCCACATAAAGCATTCATTTCAAAACTGCTGCTGCTGCTaGTGCTGGACGAGCTGGAGT | + |
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Preference number: 4 (lower is better) Translates to: KDCPIHTVTYTHIKHSFQNCCCC*CWTSWS Trigger: ACTCCAGCTCGTCCAGCAGCAGCAGCAGCAGCAGTT...TTGAAATGAATGCTTTATGTGGGTATATGTTACAGTGTGTATGGGACAGTCTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018383.10 |
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| CDS-3UTR GCA 90 bp | GATCCCAGCACCCATATCTGGCAGCTCAAAAATACCAGTAATTTCAGCTCCAAGTGTTGGTCTCTCCTATaGTTTGCAGCAATAATCTAT | + |
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Preference number: 4 (lower is better) Translates to: DPSTHIWQLKNTSNFSSKCWSLL*FAAIIY Trigger: ATAGATTATTGCTGCAAAGCATAGGAGAGACCAACA...CTTGGAGCTGAAATTACTGGTATTTTTGAGCTGCCAGATATGGGTGCTGGGATC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000141585.2 |
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| CDS-3UTR GCA 90 bp | AAGATCTCTCTGAAATCAAGGCCAGTCTCCTCTACATATCAAATTCAAGGCCAGGTCTCTCCTATGCTTTaGAGCAATAATCTATTTTCT | + |
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Preference number: 4 (lower is better) Translates to: KISLKSRPVSSTYQIQGQVSPML*SNNLFS Trigger: AGAAAATAGATTATTGCTGCAAAGCATAGGAGAGAC...CTGGCCTTGAATTTGATATGTAGAGGAGACTGGCCTTGATTTCAGAGAGATCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018383.10 |
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| CDS-3UTR GCA 90 bp | CATATCTGGCAGCTCAAAAATACCAGTAATTTCAGCTCCAAGGGATCCAATGTCGTCTCTCCTATGCTTTaGAGCAATAATCTATTTTCT | + |
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Preference number: 4 (lower is better) Translates to: HIWQLKNTSNFSSKGSNVVSPML*SNNLFS Trigger: AGAAAATAGATTATTGCTGCAAAGCATAGGAGAGAC...GACATTGGATCCCTTGGAGCTGAAATTACTGGTATTTTTGAGCTGCCAGATATG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000141585.2 |
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| CDS-3UTR GCA 90 bp | CTTGATATTCTGATACAGTACAGTCAAAGACTGTCCCATACACACTGTAACATATGTTGGTCTCTCCTATaGTTTGCAGCAATAATCTAT | + |
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Preference number: 4 (lower is better) Translates to: LDILIQYSQRLSHTHCNICWSLL*FAAIIY Trigger: ATAGATTATTGCTGCAAAGCATAGGAGAGACCAACA...TATGTTACAGTGTGTATGGGACAGTCTTTGACTGTACTGTATCAGAATATCAAG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018383.10 |
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| CDS CCA 90 bp | CAGAGCTGCTCTCAGAACTGCTGCTGCTGCTGCTGCTGGACGAGCTaGAGTCCGAGTCCGAGGAGGAGGAGGAGGAAGAGGAGGAAGAGG | + |
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Preference number: 5 (lower is better) Translates to: QSCSQNCCCCCCWTS*SPSPRRRRRKRRKR Trigger: CCTCTTCCTCCTCTTCCTCCTCCTCCTCCTCGGACTCGGACTCCAGCTCGTCCAGCAGCAGCAGCAGCAGCAGTTCTGAGAGCAGCTCTG 62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018383.10 |
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| CDS GCA 90 bp | GTGGCTCATCATCAGAGCTGCTCTCAGAACTGCTGCTGCTGCTGCTaGTGGACGAGCTGGAGTCCGAGTCCGAGGAGGAGGAGGAGGAAG | + |
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Preference number: 5 (lower is better) Translates to: VAHHQSCSQNCCCCC*WTSWSPSPRRRRRK Trigger: CTTCCTCCTCCTCCTCCTCGGACTCGGACTCCAGCTCGTCCAGCAGCAGCAGCAGCAGCAGTTCTGAGAGCAGCTCTGATGATGAGCCAC 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018383.10 |
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| CDS CCA 90 bp | GCTCATCATCAGAGCTGCTCTCAGAACTGCTGCTGCTGCTGCTGCTaGACGAGCTGGAGTCCGAGTCCGAGGAGGAGGAGGAGGAAGAGG | + |
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Preference number: 5 (lower is better) Translates to: AHHQSCSQNCCCCCC*TSWSPSPRRRRRKR Trigger: CCTCTTCCTCCTCCTCCTCCTCGGACTCGGACTCCAGCTCGTCCAGCAGCAGCAGCAGCAGCAGTTCTGAGAGCAGCTCTGATGATGAGC 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018383.10 |
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| CDS GCA 90 bp | TCTTCTGTGGCTCATCATCAGAGCTGCTCTCAGAACTGCTGCTGCTaGTGCTGCTGGACGAGCTGGAGTCCGAGTCCGAGGAGGAGGAGG | + |
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Preference number: 5 (lower is better) Translates to: SSVAHHQSCSQNCCC*CCWTSWSPSPRRRR Trigger: CCTCCTCCTCCTCGGACTCGGACTCCAGCTCGTCCAGCAGCAGCAGCAGCAGCAGTTCTGAGAGCAGCTCTGATGATGAGCCACAGAAGA 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018383.10 |
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| CDS GCA 90 bp | TTTTCTTCTTCTGTGGCTCATCATCAGAGCTGCTCTCAGAACTGCTaGTGCTGCTGCTGCTGGACGAGCTGGAGTCCGAGTCCGAGGAGG | + |
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Preference number: 5 (lower is better) Translates to: FSSSVAHHQSCSQNC*CCCCWTSWSPSPRR Trigger: CCTCCTCGGACTCGGACTCCAGCTCGTCCAGCAGCAGCAGCAGCAGCAGTTCTGAGAGCAGCTCTGATGATGAGCCACAGAAGAAGAAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018383.10 |
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| CDS GCA 90 bp | TCTTTTTCTTCTTCTGTGGCTCATCATCAGAGCTGCTCTCAGAACTaGTGCTGCTGCTGCTGCTGGACGAGCTGGAGTCCGAGTCCGAGG | + |
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Preference number: 5 (lower is better) Translates to: SFSSSVAHHQSCSQN*CCCCCWTSWSPSPR Trigger: CCTCGGACTCGGACTCCAGCTCGTCCAGCAGCAGCAGCAGCAGCAGTTCTGAGAGCAGCTCTGATGATGAGCCACAGAAGAAGAAAAAGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018383.10 |
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| CDS-3UTR CAA 90 bp | TTCTGTCTGTCAGAGGCCTGTCAAGGAATTCGGATCCCAGCACCCATATCTGGCATCTTTTTCTCTATGTaGGTCTCTCCTATGCTTTGC | + |
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Preference number: 5 (lower is better) Translates to: FCLSEACQGIRIPAPISGIFFSM*VSPMLC Trigger: GCAAAGCATAGGAGAGACCAACATAGAGAAAAAGAT...GCCAGATATGGGTGCTGGGATCCGAATTCCTTGACAGGCCTCTGACAGACAGAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000141585.2 |
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| CDS-3UTR CAA 90 bp | GTTCTGTCTGTCAGAGGCCTGTCAAGGAATTCGGATCCCAGCACCCATATCTGGTCCCTCTTCTTCTTCTaGATCTTTTTCTCTATGTTG | + |
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Preference number: 5 (lower is better) Translates to: VLSVRGLSRNSDPSTHIWSLFFF*IFFSML Trigger: CAACATAGAGAAAAAGATCAAGAAGAAGAAGAGGGA...CCAGATATGGGTGCTGGGATCCGAATTCCTTGACAGGCCTCTGACAGACAGAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000141585.2 |
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| CDS-3UTR CAA 90 bp | AAGATCTCTCTGAAATCAAGGCCAGTCTCCTCTACATATCAAATTCAAGGCCAGATCTTTTTCTCTATGTaGGTCTCTCCTATGCTTTGC | + |
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Preference number: 5 (lower is better) Translates to: KISLKSRPVSSTYQIQGQIFFSM*VSPMLC Trigger: GCAAAGCATAGGAGAGACCAACATAGAGAAAAAGAT...CTGGCCTTGAATTTGATATGTAGAGGAGACTGGCCTTGATTTCAGAGAGATCTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018383.10 |
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| CDS-3UTR CAA 90 bp | CTGAAATCAAGGCCAGTCTCCTCTACATATCAAATTCAAGGCCAGCTAGACCTAGACCTCTTCTTCTTCTaGATCTTTTTCTCTATGTTG | + |
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Preference number: 5 (lower is better) Translates to: LKSRPVSSTYQIQGQLDLDLFFF*IFFSML Trigger: CAACATAGAGAAAAAGATCAAGAAGAAGAAGAGGTC...TAGGTCTAGCTGGCCTTGAATTTGATATGTAGAGGAGACTGGCCTTGATTTCAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018383.10 |
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| CDS CCA 72 bp | CAGAGCTGCTCTCAGAACTGCTGCTGCTGCTGCTGCTaGACGAGCTGGAGTCCGAGTCCGAGGAGGAGGAGG | + |
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Preference number: 6 (lower is better) Translates to: QSCSQNCCCCCC*TSWSPSPRRRR Trigger: CCTCCTCCTCCTCGGACTCGGACTCCAGCTCGTCCAGCAGCAGCAGCAGCAGCAGTTCTGAGAGCAGCTCTG 64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018383.10 |
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| CDS GCA 72 bp | CATCAGAGCTGCTCTCAGAACTGCTGCTGCTGCTGCTaGTGGACGAGCTGGAGTCCGAGTCCGAGGAGGAGG | + |
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Preference number: 6 (lower is better) Translates to: HQSCSQNCCCCC*WTSWSPSPRRR Trigger: CCTCCTCCTCGGACTCGGACTCCAGCTCGTCCAGCAGCAGCAGCAGCAGCAGTTCTGAGAGCAGCTCTGATG 62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018383.10 |
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| CDS CCA 72 bp | TCTCAGAACTGCTGCTGCTGCTGCTGCTGGACGAGCTaGAGTCCGAGTCCGAGGAGGAGGAGGAGGAAGAGG | + |
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Preference number: 6 (lower is better) Translates to: SQNCCCCCCWTS*SPSPRRRRRKR Trigger: CCTCTTCCTCCTCCTCCTCCTCGGACTCGGACTCCAGCTCGTCCAGCAGCAGCAGCAGCAGCAGTTCTGAGA 62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018383.10 |
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| CDS GCA 72 bp | TCTGTGGCTCATCATCAGAGCTGCTCTCAGAACTGCTaGTGCTGCTGCTGCTGGACGAGCTGGAGTCCGAGT | + |
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Preference number: 6 (lower is better) Translates to: SVAHHQSCSQNC*CCCCWTSWSPS Trigger: ACTCGGACTCCAGCTCGTCCAGCAGCAGCAGCAGCAGCAGTTCTGAGAGCAGCTCTGATGATGAGCCACAGA 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018383.10 |
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| CDS GCA 72 bp | TCTTCTGTGGCTCATCATCAGAGCTGCTCTCAGAACTaGTGCTGCTGCTGCTGCTGGACGAGCTGGAGTCCG | + |
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Preference number: 6 (lower is better) Translates to: SSVAHHQSCSQN*CCCCCWTSWSP Trigger: CGGACTCCAGCTCGTCCAGCAGCAGCAGCAGCAGCAGTTCTGAGAGCAGCTCTGATGATGAGCCACAGAAGA 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018383.10 |
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