Pregenerated sensors for ZC3H8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027387Ensembl transcript IDs: ENSMUST00000028866.9
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCTCCTCTCCTGGCCCAGTGCAGAACCAGCCTTCGATTGAGCACTTaGTCCACCACTCTGCGTGTCGAACGGGAGCTGCACACGATCACG | + |
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Preference number: 1 (lower is better) Translates to: APLLAQCRTSLRLST*STTLRVERELHTIT Trigger: CGTGATCGTGTGCAGCTCCCGTTCGACACGCAGAGTGGTGGATCAAGTGCTCAATCGAAGGCTGGTTCTGCACTGGGCCAGGAGAGGAGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| 3UTR TCA 90 bp | GCTCTCGACTGGAGGAGACTTCTGCAACCTAGCCCAGCACAGCACTaGGCTCTAGCCAGCACACATGTGCTCCTCTCCTGGCCCAGTGCA | + |
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Preference number: 1 (lower is better) Translates to: ALDWRRLLQPSPAQH*ALASTHVLLSWPSA Trigger: TGCACTGGGCCAGGAGAGGAGCACATGTGTGCTGGCTAGAGCTCAGTGCTGTGCTGGGCTAGGTTGCAGAAGTCTCCTCCAGTCGAGAGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| 3UTR TCA 90 bp | ACACATGTGCTCCTCTCCTGGCCCAGTGCAGAACCAGCCTTCGATTaGGCACTTGATCCACCACTCTGCGTGTCGAACGGGAGCTGCACA | + |
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Preference number: 1 (lower is better) Translates to: THVLLSWPSAEPAFD*ALDPPLCVSNGSCT Trigger: TGTGCAGCTCCCGTTCGACACGCAGAGTGGTGGATCAAGTGCTCAATCGAAGGCTGGTTCTGCACTGGGCCAGGAGAGGAGCACATGTGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| 3UTR GCA 90 bp | CTTCCTGATGGTCCTCCCATCCTCAACTGCTCTTGGCCTATTTTGTaGTTGCTCCATCATAGCTCTCGACTGGAGGAGACTTCTGCAACC | + |
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Preference number: 1 (lower is better) Translates to: LPDGPPILNCSWPIL*LLHHSSRLEETSAT Trigger: GGTTGCAGAAGTCTCCTCCAGTCGAGAGCTATGATGGAGCAAGCACAAAATAGGCCAAGAGCAGTTGAGGATGGGAGGACCATCAGGAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| 3UTR GCA 90 bp | AGCAGCTCTGTCATCACCCTTCCTGATGGTCCTCCCATCCTCAACTaGTCTTGGCCTATTTTGTGCTTGCTCCATCATAGCTCTCGACTG | + |
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Preference number: 1 (lower is better) Translates to: SSSVITLPDGPPILN*SWPILCLLHHSSRL Trigger: CAGTCGAGAGCTATGATGGAGCAAGCACAAAATAGGCCAAGAGCAGTTGAGGATGGGAGGACCATCAGGAAGGGTGATGACAGAGCTGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| 3UTR CCA 90 bp | TCTGTCATCACCCTTCCTGATGGTCCTCCCATCCTCAACTGCTCTTaGCCTATTTTGTGCTTGCTCCATCATAGCTCTCGACTGGAGGAG | + |
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Preference number: 1 (lower is better) Translates to: SVITLPDGPPILNCS*PILCLLHHSSRLEE Trigger: CTCCTCCAGTCGAGAGCTATGATGGAGCAAGCACAAAATAGGCCAAGAGCAGTTGAGGATGGGAGGACCATCAGGAAGGGTGATGACAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| 3UTR CAA 90 bp | TGCTCCTCTCCTGGCCCAGTGCAGAACCAGCCTTCGATTGAGCACTaGATCCACCACTCTGCGTGTCGAACGGGAGCTGCACACGATCAC | + |
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Preference number: 2 (lower is better) Translates to: CSSPGPVQNQPSIEH*IHHSACRTGAAHDH Trigger: GTGATCGTGTGCAGCTCCCGTTCGACACGCAGAGTGGTGGATCAAGTGCTCAATCGAAGGCTGGTTCTGCACTGGGCCAGGAGAGGAGCA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| 3UTR CAA 90 bp | ACCCTTCCTGATGGTCCTCCCATCCTCAACTGCTCTTGGCCTATTTaGTGCTTGCTCCATCATAGCTCTCGACTGGAGGAGACTTCTGCA | + |
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Preference number: 2 (lower is better) Translates to: TLPDGPPILNCSWPI*CLLHHSSRLEETSA Trigger: TGCAGAAGTCTCCTCCAGTCGAGAGCTATGATGGAGCAAGCACAAAATAGGCCAAGAGCAGTTGAGGATGGGAGGACCATCAGGAAGGGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| 3UTR TCA 72 bp | CTCCTCTCCTGGCCCAGTGCAGAACCAGCCTTCGATTaGGCACTTGATCCACCACTCTGCGTGTCGAACGGG | + |
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Preference number: 3 (lower is better) Translates to: LLSWPSAEPAFD*ALDPPLCVSNG Trigger: CCCGTTCGACACGCAGAGTGGTGGATCAAGTGCTCAATCGAAGGCTGGTTCTGCACTGGGCCAGGAGAGGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| 3UTR TCA 72 bp | TGGAGGAGACTTCTGCAACCTAGCCCAGCACAGCACTaGGCTCTAGCCAGCACACATGTGCTCCTCTCCTGG | + |
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Preference number: 3 (lower is better) Translates to: WRRLLQPSPAQH*ALASTHVLLSW Trigger: CCAGGAGAGGAGCACATGTGTGCTGGCTAGAGCTCAGTGCTGTGCTGGGCTAGGTTGCAGAAGTCTCCTCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| 3UTR GCA 72 bp | GTCATCACCCTTCCTGATGGTCCTCCCATCCTCAACTaGTCTTGGCCTATTTTGTGCTTGCTCCATCATAGC | + |
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Preference number: 3 (lower is better) Translates to: VITLPDGPPILN*SWPILCLLHHS Trigger: GCTATGATGGAGCAAGCACAAAATAGGCCAAGAGCAGTTGAGGATGGGAGGACCATCAGGAAGGGTGATGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| CDS-3UTR TCA 90 bp | CCAGCACACATGTGCTCCTCTCCTGGCCCAGTGCAGAACCAGCCTTCGATTGAGTGGTTGATAAAGCCTTaGCTCATCCTCACACGTGGC | + |
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Preference number: 4 (lower is better) Translates to: PAHMCSSPGPVQNQPSIEWLIKP*LILTRG Trigger: GCCACGTGTGAGGATGAGTCAAGGCTTTATCAACCA...CTCAATCGAAGGCTGGTTCTGCACTGGGCCAGGAGAGGAGCACATGTGTGCTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| CDS-3UTR CCA 90 bp | CTAGCCAGCACACATGTGCTCCTCTCCTGGCCCAGTGCAGAACCAGCCTTCGATTGTTTAGCAGTCTGCTaGGTACCTTCTGCTCCTGCT | + |
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Preference number: 4 (lower is better) Translates to: LASTHVLLSWPSAEPAFDCLAVC*VPSAPA Trigger: AGCAGGAGCAGAAGGTACCCAGCAGACTGCTAAACA...ATCGAAGGCTGGTTCTGCACTGGGCCAGGAGAGGAGCACATGTGTGCTGGCTAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| CDS-3UTR CCA 90 bp | CCAGCACACATGTGCTCCTCTCCTGGCCCAGTGCAGAACCAGCCTTCGATTGAGACTCATCCTCACACGTaGCTGCTTCTCTTCAGGTTC | + |
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Preference number: 4 (lower is better) Translates to: PAHMCSSPGPVQNQPSIETHPHT*LLLFRF Trigger: GAACCTGAAGAGAAGCAGCCACGTGTGAGGATGAGT...CTCAATCGAAGGCTGGTTCTGCACTGGGCCAGGAGAGGAGCACATGTGTGCTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| 3UTR CAA 72 bp | GATGGTCCTCCCATCCTCAACTGCTCTTGGCCTATTTaGTGCTTGCTCCATCATAGCTCTCGACTGGAGGAG | + |
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Preference number: 4 (lower is better) Translates to: DGPPILNCSWPI*CLLHHSSRLEE Trigger: CTCCTCCAGTCGAGAGCTATGATGGAGCAAGCACAAAATAGGCCAAGAGCAGTTGAGGATGGGAGGACCATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| CDS-3UTR GCA 90 bp | CCAGCACACATGTGCTCCTCTCCTGGCCCAGTGCAGAACCAGCCTTCGATTGAGAAATATTTGCAAACTTaGTTCCCTTTGCGTTCCACC | + |
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Preference number: 4 (lower is better) Translates to: PAHMCSSPGPVQNQPSIEKYLQT*FPLRST Trigger: GGTGGAACGCAAAGGGAAGCAAGTTTGCAAATATTT...CTCAATCGAAGGCTGGTTCTGCACTGGGCCAGGAGAGGAGCACATGTGTGCTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| CDS-3UTR CCA 90 bp | CTAGCCAGCACACATGTGCTCCTCTCCTGGCCCAGTGCAGAACCAGCCTTCGATCGCCCTGATAACATTTaGTTCCTGTGTGATAAAACT | + |
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Preference number: 4 (lower is better) Translates to: LASTHVLLSWPSAEPAFDRPDNI*FLCDKT Trigger: AGTTTTATCACACAGGAACCAAATGTTATCAGGGCG...ATCGAAGGCTGGTTCTGCACTGGGCCAGGAGAGGAGCACATGTGTGCTGGCTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| CDS-3UTR TCA 90 bp | CTCAACTGCTCTTGGCCTATTTTGTGCTTGCTCCATCATAGCTCTCGACTGGAGGTCAAAGTTATCTTCTaGCCCCTGGCTGCATGTCTC | + |
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Preference number: 4 (lower is better) Translates to: LNCSWPILCLLHHSSRLEVKVIF*PLAACL Trigger: GAGACATGCAGCCAGGGGTCAGAAGATAACTTTGAC...CTCCAGTCGAGAGCTATGATGGAGCAAGCACAAAATAGGCCAAGAGCAGTTGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| CDS-3UTR CCA 90 bp | TATGAACTATTCCAAACCACCAGCCTTCAAAAGTCCCGAGCGGGAATAGCTTTGTGCCGAGGGCCGGATTaGGGGGCTTTGAAAAGAGAT | + |
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Preference number: 4 (lower is better) Translates to: YELFQTTSLQKSRAGIALCRGPD*GALKRD Trigger: ATCTCTTTTCAAAGCCCCCCAATCCGGCCCTCGGCA...CAAAGCTATTCCCGCTCGGGACTTTTGAAGGCTGGTGGTTTGGAATAGTTCATA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| CDS-3UTR GCA 90 bp | CTCAACTGCTCTTGGCCTATTTTGTGCTTGCTCCATCATAGCTCTCGACTGGAGGGTACCTTCTGCTCCTaGTTTCTTCACAGACTCTTC | + |
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Preference number: 4 (lower is better) Translates to: LNCSWPILCLLHHSSRLEGTFCS*FLHRLF Trigger: GAAGAGTCTGTGAAGAAAGCAGGAGCAGAAGGTACC...CTCCAGTCGAGAGCTATGATGGAGCAAGCACAAAATAGGCCAAGAGCAGTTGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| CDS-3UTR GCA 90 bp | TCTAGCCAGCACACATGTGCTCCTCTCCTGGCCCAGTGCAGAACCAGCCTTCGATTTCAAGGAAATATTTaGAAACTTGCTTCCCTTTGC | + |
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Preference number: 4 (lower is better) Translates to: SSQHTCAPLLAQCRTSLRFQGNI*KLASLC Trigger: GCAAAGGGAAGCAAGTTTGCAAATATTTCCTTGAAA...TCGAAGGCTGGTTCTGCACTGGGCCAGGAGAGGAGCACATGTGTGCTGGCTAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| CDS-3UTR GCA 90 bp | CTAGCCAGCACACATGTGCTCCTCTCCTGGCCCAGTGCAGAACCAGCCTTCGATCTGTGTGATAAAACTTaGAAGGGTATTCACTATGTA | + |
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Preference number: 4 (lower is better) Translates to: LASTHVLLSWPSAEPAFDLCDKT*KGIHYV Trigger: TACATAGTGAATACCCTTGCAAGTTTTATCACACAG...ATCGAAGGCTGGTTCTGCACTGGGCCAGGAGAGGAGCACATGTGTGCTGGCTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| CDS-3UTR GCA 90 bp | ACTGAGGAACCTTATGAACTATTCCAAACCACCAGCCTTCAAAAGTCCCGAGCGGGGTTGAGCTGCGTTTaGCATTTCTTTGGCTTGTAT | + |
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Preference number: 4 (lower is better) Translates to: TEEPYELFQTTSLQKSRAGLSCV*HFFGLY Trigger: ATACAAGCCAAAGAAATGGCAAACGCAGCTCAACCC...CGCTCGGGACTTTTGAAGGCTGGTGGTTTGGAATAGTTCATAAGGTTCCTCAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| CDS-3UTR GCA 90 bp | GTTACCCCAATAAATAACCCCCTAGCAGCTCTGTCATCACCCTTCCTGATGGTCGCAGCGTTTCCAAGGTaGTTAAATTTCTTGGGAATT | + |
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Preference number: 4 (lower is better) Translates to: VTPINNPLAALSSPFLMVAAFPR*LNFLGI Trigger: AATTCCCAAGAAATTTAAGCACCTTGGAAACGCTGC...GACCATCAGGAAGGGTGATGACAGAGCTGCTAGGGGGTTATTTATTGGGGTAAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| CDS-3UTR CCA 90 bp | ACTGAGGAACCTTATGAACTATTCCAAACCACCAGCCTTCAAAAGTCCCGAGCGCTCACCATCACTATATaGGTCATAGTCCTTACTTCT | + |
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Preference number: 4 (lower is better) Translates to: TEEPYELFQTTSLQKSRALTITI*VIVLTS Trigger: AGAAGTAAGGACTATGACCCATATAGTGATGGTGAG...CGCTCGGGACTTTTGAAGGCTGGTGGTTTGGAATAGTTCATAAGGTTCCTCAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| CDS-3UTR TCA 90 bp | TATGAACTATTCCAAACCACCAGCCTTCAAAAGTCCCGAGCGGGAATAGCTTTGGCTTGTATGTACTGTTaGAGCTCTTTGTCAAAGTTA | + |
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Preference number: 4 (lower is better) Translates to: YELFQTTSLQKSRAGIALACMYC*SSLSKL Trigger: TAACTTTGACAAAGAGCTTCAACAGTACATACAAGC...CAAAGCTATTCCCGCTCGGGACTTTTGAAGGCTGGTGGTTTGGAATAGTTCATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| CDS-3UTR CAA 90 bp | CCAGCACACATGTGCTCCTCTCCTGGCCCAGTGCAGAACCAGCCTTCGATTGAGAACTCTTTGGTGATGTaGCAGCGTTTCCAAGGTGCT | + |
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Preference number: 5 (lower is better) Translates to: PAHMCSSPGPVQNQPSIENSLVM*QRFQGA Trigger: AGCACCTTGGAAACGCTGCAACATCACCAAAGAGTT...CTCAATCGAAGGCTGGTTCTGCACTGGGCCAGGAGAGGAGCACATGTGTGCTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| CDS-3UTR CAA 90 bp | CCAGCACACATGTGCTCCTCTCCTGGCCCAGTGCAGAACCAGCCTTCGATTGAGTACGTAGCAAACTCTTaGGTGATGTTGCAGCGTTTC | + |
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Preference number: 5 (lower is better) Translates to: PAHMCSSPGPVQNQPSIEYVANS*VMLQRF Trigger: GAAACGCTGCAACATCACCAAAGAGTTTGCTACGTA...CTCAATCGAAGGCTGGTTCTGCACTGGGCCAGGAGAGGAGCACATGTGTGCTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| CDS TCA 90 bp | TTCATCAGTCTGTTCCCGGGAGCCACTGTTCTTCAGCAAGGCCCTTaGCCCTTTGTCTCCAGTGCCAGGCCACTTTCGCTTCATTTTCTT | + |
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Preference number: 5 (lower is better) Translates to: FISLFPGATVLQQGP*PFVSSARPLSLHFL Trigger: AAGAAAATGAAGCGAAAGTGGCCTGGCACTGGAGACAAAGGGTCAAGGGCCTTGCTGAAGAACAGTGGCTCCCGGGAACAGACTGATGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| CDS TCA 90 bp | ACTTGCTTCCCTTTGCGTTCCACCGTGTGCTGGTTGATAAAGCCTTaGCTCATCCTCACACGTGGCTGCTTCTCTTCAGGTTCATCAGTC | + |
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Preference number: 5 (lower is better) Translates to: TCFPLRSTVCWLIKP*LILTRGCFSSGSSV Trigger: GACTGATGAACCTGAAGAGAAGCAGCCACGTGTGAGGATGAGTCAAGGCTTTATCAACCAGCACACGGTGGAACGCAAAGGGAAGCAAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| CDS-3UTR CAA 90 bp | CTCAACTGCTCTTGGCCTATTTTGTGCTTGCTCCATCATAGCTCTCGACTGGAGCTGGTTGATAAAGCCTaGACTCATCCTCACACGTGG | + |
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Preference number: 5 (lower is better) Translates to: LNCSWPILCLLHHSSRLELVDKA*THPHTW Trigger: CCACGTGTGAGGATGAGTCAAGGCTTTATCAACCAG...CTCCAGTCGAGAGCTATGATGGAGCAAGCACAAAATAGGCCAAGAGCAGTTGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| CDS-3UTR CAA 90 bp | CTAGCCAGCACACATGTGCTCCTCTCCTGGCCCAGTGCAGAACCAGCCTTCGATCTTTCAAGGAAATATTaGCAAACTTGCTTCCCTTTG | + |
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Preference number: 5 (lower is better) Translates to: LASTHVLLSWPSAEPAFDLSRKY*QTCFPL Trigger: CAAAGGGAAGCAAGTTTGCAAATATTTCCTTGAAAG...ATCGAAGGCTGGTTCTGCACTGGGCCAGGAGAGGAGCACATGTGTGCTGGCTAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| CDS TCA 90 bp | TTTGGCTTGTATGTACTGTTGAAGCTCTTTGTCAAAGTTATCTTCTaGCCCCTGGCTGCATGTCTCACCATCACTATATGGGTCATAGTC | + |
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Preference number: 5 (lower is better) Translates to: FGLYVLLKLFVKVIF*PLAACLTITIWVIV Trigger: GACTATGACCCATATAGTGATGGTGAGACATGCAGCCAGGGGTCAGAAGATAACTTTGACAAAGAGCTTCAACAGTACATACAAGCCAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| CDS-3UTR CAA 90 bp | TATGAACTATTCCAAACCACCAGCCTTCAAAAGTCCCGAGCGGGAATAGCTTTGGGCTTGTATGTACTGTaGAAGCTCTTTGTCAAAGTT | + |
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Preference number: 5 (lower is better) Translates to: YELFQTTSLQKSRAGIALGLYVL*KLFVKV Trigger: AACTTTGACAAAGAGCTTCAACAGTACATACAAGCC...CAAAGCTATTCCCGCTCGGGACTTTTGAAGGCTGGTGGTTTGGAATAGTTCATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| CDS GCA 90 bp | TACAGTGATCGCCCTGATAACATTTGGTTCCTGTGTGATAAAACTTaGAAGGGTATTCACTATGTAAATACAGGCAGTTCTCTCCTTTGG | + |
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Preference number: 5 (lower is better) Translates to: YSDRPDNIWFLCDKT*KGIHYVNTGSSLLW Trigger: CCAAAGGAGAGAACTGCCTGTATTTACATAGTGAATACCCTTGCAAGTTTTATCACACAGGAACCAAATGTTATCAGGGCGATCACTGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| CDS GCA 90 bp | TTTTTACGTAGCAAACTCTTTGGTGATGTTGCAGCGTTTCCAAGGTaGTTAAATTTCTTGGGAATTTGTTCACGGTCCCGTTTTACTTTC | + |
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Preference number: 5 (lower is better) Translates to: FLRSKLFGDVAAFPR*LNFLGICSRSRFTF Trigger: GAAAGTAAAACGGGACCGTGAACAAATTCCCAAGAAATTTAAGCACCTTGGAAACGCTGCAACATCACCAAAGAGTTTGCTACGTAAAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| CDS TCA 72 bp | CTGTTCCCGGGAGCCACTGTTCTTCAGCAAGGCCCTTaGCCCTTTGTCTCCAGTGCCAGGCCACTTTCGCTT | + |
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Preference number: 6 (lower is better) Translates to: LFPGATVLQQGP*PFVSSARPLSL Trigger: AAGCGAAAGTGGCCTGGCACTGGAGACAAAGGGTCAAGGGCCTTGCTGAAGAACAGTGGCTCCCGGGAACAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| CDS CAA 72 bp | TCTGTTCCCGGGAGCCACTGTTCTTCAGCAAGGCCCTaGACCCTTTGTCTCCAGTGCCAGGCCACTTTCGCT | + |
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Preference number: 6 (lower is better) Translates to: SVPGSHCSSARP*TLCLQCQATFA Trigger: AGCGAAAGTGGCCTGGCACTGGAGACAAAGGGTCAAGGGCCTTGCTGAAGAACAGTGGCTCCCGGGAACAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| CDS CAA 72 bp | CGGGAGCCACTGTTCTTCAGCAAGGCCCTTGACCCTTaGTCTCCAGTGCCAGGCCACTTTCGCTTCATTTTC | + |
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Preference number: 6 (lower is better) Translates to: REPLFFSKALDP*SPVPGHFRFIF Trigger: GAAAATGAAGCGAAAGTGGCCTGGCACTGGAGACAAAGGGTCAAGGGCCTTGCTGAAGAACAGTGGCTCCCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| CDS CAA 72 bp | CCCTTTGCGTTCCACCGTGTGCTGGTTGATAAAGCCTaGACTCATCCTCACACGTGGCTGCTTCTCTTCAGG | + |
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Preference number: 6 (lower is better) Translates to: PFAFHRVLVDKA*THPHTWLLLFR Trigger: CCTGAAGAGAAGCAGCCACGTGTGAGGATGAGTCAAGGCTTTATCAACCAGCACACGGTGGAACGCAAAGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| CDS CAA 90 bp | GTTCATCAGTCTGTTCCCGGGAGCCACTGTTCTTCAGCAAGGCCCTaGACCCTTTGTCTCCAGTGCCAGGCCACTTTCGCTTCATTTTCT | + |
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Preference number: 6 (lower is better) Translates to: VHQSVPGSHCSSARP*TLCLQCQATFASFS Trigger: AGAAAATGAAGCGAAAGTGGCCTGGCACTGGAGACAAAGGGTCAAGGGCCTTGCTGAAGAACAGTGGCTCCCGGGAACAGACTGATGAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| CDS TCA 72 bp | CCTTTGCGTTCCACCGTGTGCTGGTTGATAAAGCCTTaGCTCATCCTCACACGTGGCTGCTTCTCTTCAGGT | + |
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Preference number: 6 (lower is better) Translates to: PLRSTVCWLIKP*LILTRGCFSSG Trigger: ACCTGAAGAGAAGCAGCCACGTGTGAGGATGAGTCAAGGCTTTATCAACCAGCACACGGTGGAACGCAAAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| CDS CAA 90 bp | GTCTGTTCCCGGGAGCCACTGTTCTTCAGCAAGGCCCTTGACCCTTaGTCTCCAGTGCCAGGCCACTTTCGCTTCATTTTCTTCTGTTTA | + |
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Preference number: 6 (lower is better) Translates to: VCSREPLFFSKALDP*SPVPGHFRFIFFCL Trigger: TAAACAGAAGAAAATGAAGCGAAAGTGGCCTGGCACTGGAGACAAAGGGTCAAGGGCCTTGCTGAAGAACAGTGGCTCCCGGGAACAGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| CDS CCA 72 bp | GTGCTGGTTGATAAAGCCTTGACTCATCCTCACACGTaGCTGCTTCTCTTCAGGTTCATCAGTCTGTTCCCG | + |
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Preference number: 6 (lower is better) Translates to: VLVDKALTHPHT*LLLFRFISLFP Trigger: CGGGAACAGACTGATGAACCTGAAGAGAAGCAGCCACGTGTGAGGATGAGTCAAGGCTTTATCAACCAGCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| CDS CAA 90 bp | AACTTGCTTCCCTTTGCGTTCCACCGTGTGCTGGTTGATAAAGCCTaGACTCATCCTCACACGTGGCTGCTTCTCTTCAGGTTCATCAGT | + |
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Preference number: 6 (lower is better) Translates to: NLLPFAFHRVLVDKA*THPHTWLLLFRFIS Trigger: ACTGATGAACCTGAAGAGAAGCAGCCACGTGTGAGGATGAGTCAAGGCTTTATCAACCAGCACACGGTGGAACGCAAAGGGAAGCAAGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| CDS TCA 72 bp | GCTGCGTTTGCCATTTCTTTGGCTTGTATGTACTGTTaGAGCTCTTTGTCAAAGTTATCTTCTGACCCCTGG | + |
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Preference number: 6 (lower is better) Translates to: AAFAISLACMYC*SSLSKLSSDPW Trigger: CCAGGGGTCAGAAGATAACTTTGACAAAGAGCTTCAACAGTACATACAAGCCAAAGAAATGGCAAACGCAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| CDS TCA 72 bp | GCTTTCTTCACAGACTCTTCAGGAAGTAATGAGGGTTaGGCTGCGTTTGCCATTTCTTTGGCTTGTATGTAC | + |
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Preference number: 6 (lower is better) Translates to: AFFTDSSGSNEG*AAFAISLACMY Trigger: GTACATACAAGCCAAAGAAATGGCAAACGCAGCTCAACCCTCATTACTTCCTGAAGAGTCTGTGAAGAAAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| CDS GCA 72 bp | AGCAAACTCTTTGGTGATGTTGCAGCGTTTCCAAGGTaGTTAAATTTCTTGGGAATTTGTTCACGGTCCCGT | + |
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Preference number: 6 (lower is better) Translates to: SKLFGDVAAFPR*LNFLGICSRSR Trigger: ACGGGACCGTGAACAAATTCCCAAGAAATTTAAGCACCTTGGAAACGCTGCAACATCACCAAAGAGTTTGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| CDS CAA 72 bp | CAGACTCTTCAGGAAGTAATGAGGGTTGAGCTGCGTTaGCCATTTCTTTGGCTTGTATGTACTGTTGAAGCT | + |
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Preference number: 6 (lower is better) Translates to: QTLQEVMRVELR*PFLWLVCTVEA Trigger: AGCTTCAACAGTACATACAAGCCAAAGAAATGGCAAACGCAGCTCAACCCTCATTACTTCCTGAAGAGTCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| CDS CAA 90 bp | CTTTCTTCACAGACTCTTCAGGAAGTAATGAGGGTTGAGCTGCGTTaGCCATTTCTTTGGCTTGTATGTACTGTTGAAGCTCTTTGTCAA | + |
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Preference number: 6 (lower is better) Translates to: LSSQTLQEVMRVELR*PFLWLVCTVEALCQ Trigger: TTGACAAAGAGCTTCAACAGTACATACAAGCCAAAGAAATGGCAAACGCAGCTCAACCCTCATTACTTCCTGAAGAGTCTGTGAAGAAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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| CDS CAA 72 bp | TGCAGCGTTTCCAAGGTGCTTAAATTTCTTGGGAATTaGTTCACGGTCCCGTTTTACTTTCCATTTGACTTT | + |
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Preference number: 6 (lower is better) Translates to: CSVSKVLKFLGN*FTVPFYFPFDF Trigger: AAAGTCAAATGGAAAGTAAAACGGGACCGTGAACAAATTCCCAAGAAATTTAAGCACCTTGGAAACGCTGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028866.9 |
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