RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZC3H3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000075600

Ensembl transcript IDs: ENSMUST00000100538.4

Found 209 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GCACACAAAGGCCTCCAGAGGCTAGGAGCCAAGTGGGAGGAGCTATaGCTCCTGGTTAGAGCCCCAGCTGGGCTCAGTGGCAGGCTGCTT +
Preference number: 1 (lower is better)
Translates to: AHKGLQRLGAKWEEL*LLVRAPAGLSGRLL
Trigger: AAGCAGCCTGCCACTGAGCCCAGCTGGGGCTCTAACCAGGAGTCATAGCTCCTCCCACTTGGCTCCTAGCCTCTGGAGGCCTTTGTGTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
3UTR CCA 90 bp GGAACAGGGAATGGACAGGGCCTTGGCTTGAGGGAGAACAAGGCCTaGGCACACAAAGGCCTCCAGAGGCTAGGAGCCAAGTGGGAGGAG +
Preference number: 1 (lower is better)
Translates to: GTGNGQGLGLRENKA*AHKGLQRLGAKWEE
Trigger: CTCCTCCCACTTGGCTCCTAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTTGTTCTCCCTCAAGCCAAGGCCCTGTCCATTCCCTGTTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
3UTR TCA 90 bp ACCAGTCCTACAGCTGCCAATGCCACCACAGGAGACAGGCTGGGATaGACCTCACATGGCACCCTGATGGATGGGGAGCCAGGGACAAGT +
Preference number: 1 (lower is better)
Translates to: TSPTAANATTGDRLG*TSHGTLMDGEPGTS
Trigger: ACTTGTCCCTGGCTCCCCATCCATCAGGGTGCCATGTGAGGTTCATCCCAGCCTGTCTCCTGTGGTGGCATTGGCAGCTGTAGGACTGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
3UTR GCA 90 bp AGCTATGACTCCTGGTTAGAGCCCCAGCTGGGCTCAGTGGCAGGCTaGTTCTCCTCAGGAGCAGTTGTGGGTAGAGCCTTCATCCTCTCC +
Preference number: 1 (lower is better)
Translates to: SYDSWLEPQLGSVAG*FSSGAVVGRAFILS
Trigger: GGAGAGGATGAAGGCTCTACCCACAACTGCTCCTGAGGAGAAGCAGCCTGCCACTGAGCCCAGCTGGGGCTCTAACCAGGAGTCATAGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
3UTR-3UTR TCA 90 bp AAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGAGCCAAGTGGGAGGAGCTACCAGGGGTGAGGGTCTaGGGTAGGTGCGGGCTGGTC +
Preference number: 2 (lower is better)
Translates to: KAWAHKGLQRLGAKWEELPGVRV*GRCGLV
Trigger: GACCAGCCCGCACCTACCTCAGACCCTCACCCCTGG...TAGCTCCTCCCACTTGGCTCCTAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
3UTR-3UTR TCA 90 bp GCAGGAGTCCTGGGTAGGGAGGGTTGGGGGCACCAGTCCTACAGCTGCCAATGCCCTCACATGGCACCCTaGTGGATGGGGAGCCAGGGA +
Preference number: 2 (lower is better)
Translates to: AGVLGREGWGHQSYSCQCPHMAP*WMGSQG
Trigger: TCCCTGGCTCCCCATCCATCAGGGTGCCATGTGAGG...GCATTGGCAGCTGTAGGACTGGTGCCCCCAACCCTCCCTACCCAGGACTCCTGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
3UTR-3UTR GCA 90 bp GATGGGGAGCCAGGGACAAGTCCTAGAGTGAGGCTGGGTGCCTTGGAGGGGAGGGGCTCAGTGGCAGGCTaGTTCTCCTCAGGAGCAGTT +
Preference number: 2 (lower is better)
Translates to: DGEPGTSPRVRLGALEGRGSVAG*FSSGAV
Trigger: AACTGCTCCTGAGGAGAAGCAGCCTGCCACTGAGCC...CCTCCCCTCCAAGGCACCCAGCCTCACTCTAGGACTTGTCCCTGGCTCCCCATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
3UTR-3UTR CCA 90 bp GAACAAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGAGCCAAGTGGGAGGACCCAGCTGGGCTCAGTaGCAGGCTGCTTCTCCTCAG +
Preference number: 2 (lower is better)
Translates to: EQGLGTQRPPEARSQVGGPSWAQ*QAASPQ
Trigger: CTGAGGAGAAGCAGCCTGCCACTGAGCCCAGCTGGG...TCCTCCCACTTGGCTCCTAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTTGTTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
3UTR-3UTR TCA 90 bp GCACCAGTCCTACAGCTGCCAATGCCACCACAGGAGACAGGCTGGGATGAACCTCATCCTCTCCAGGGGTaGGGGTCTGAGGTAGGTGCG +
Preference number: 2 (lower is better)
Translates to: APVLQLPMPPQETGWDEPHPLQG*GSEVGA
Trigger: CGCACCTACCTCAGACCCTCACCCCTGGAGAGGATG...AGGTTCATCCCAGCCTGTCTCCTGTGGTGGCATTGGCAGCTGTAGGACTGGTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
3UTR-3UTR CCA 90 bp GCAGGAGTCCTGGGTAGGGAGGGTTGGGGGCACCAGTCCTACAGCTGCCAATGCCCACAGGAGACAGGCTaGGATGAACCTCACATGGCA +
Preference number: 2 (lower is better)
Translates to: AGVLGREGWGHQSYSCQCPQETG*DEPHMA
Trigger: TGCCATGTGAGGTTCATCCCAGCCTGTCTCCTGTGG...GCATTGGCAGCTGTAGGACTGGTGCCCCCAACCCTCCCTACCCAGGACTCCTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
3UTR-3UTR CCA 90 bp GCACCAGTCCTACAGCTGCCAATGCCACCACAGGAGACAGGCTGGGATGAACCTAGGAGCTATGACTCCTaGTTAGAGCCCCAGCTGGGC +
Preference number: 2 (lower is better)
Translates to: APVLQLPMPPQETGWDEPRSYDS*LEPQLG
Trigger: GCCCAGCTGGGGCTCTAACCAGGAGTCATAGCTCCT...AGGTTCATCCCAGCCTGTCTCCTGTGGTGGCATTGGCAGCTGTAGGACTGGTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
3UTR CCA 72 bp CCTCTTCCCTGGGCAGGAGTCCTGGGTAGGGAGGGTTaGGGGCACCAGTCCTACAGCTGCCAATGCCACCAC +
Preference number: 3 (lower is better)
Translates to: PLPWAGVLGREG*GHQSYSCQCHH
Trigger: GTGGTGGCATTGGCAGCTGTAGGACTGGTGCCCCCAACCCTCCCTACCCAGGACTCCTGCCCAGGGAAGAGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
3UTR-3UTR CAA 90 bp CAGGCTGGGATGAACCTCACATGGCACCCTGATGGATGGGGAGCCAGGGACAAGGGACAGGGCCTTGGCTaGAGGGAGAACAAGGCCTGG +
Preference number: 3 (lower is better)
Translates to: QAGMNLTWHPDGWGARDKGQGLG*RENKAW
Trigger: CCAGGCCTTGTTCTCCCTCAAGCCAAGGCCCTGTCC...CTTGTCCCTGGCTCCCCATCCATCAGGGTGCCATGTGAGGTTCATCCCAGCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
3UTR-3UTR CAA 90 bp GATGGGGAGCCAGGGACAAGTCCTAGAGTGAGGCTGGGTGCCTTGGAGGGGAGGTCTCCTCAGGAGCAGTaGTGGGTAGAGCCTTCATCC +
Preference number: 3 (lower is better)
Translates to: DGEPGTSPRVRLGALEGRSPQEQ*WVEPSS
Trigger: GGATGAAGGCTCTACCCACAACTGCTCCTGAGGAGA...CCTCCCCTCCAAGGCACCCAGCCTCACTCTAGGACTTGTCCCTGGCTCCCCATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
3UTR GCA 72 bp TCCTGGTTAGAGCCCCAGCTGGGCTCAGTGGCAGGCTaGTTCTCCTCAGGAGCAGTTGTGGGTAGAGCCTTC +
Preference number: 3 (lower is better)
Translates to: SWLEPQLGSVAG*FSSGAVVGRAF
Trigger: GAAGGCTCTACCCACAACTGCTCCTGAGGAGAAGCAGCCTGCCACTGAGCCCAGCTGGGGCTCTAACCAGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
3UTR CCA 72 bp GCTCAGTGGCAGGCTGCTTCTCCTCAGGAGCAGTTGTaGGTAGAGCCTTCATCCTCTCCAGGGGTGAGGGTC +
Preference number: 3 (lower is better)
Translates to: AQWQAASPQEQL*VEPSSSPGVRV
Trigger: GACCCTCACCCCTGGAGAGGATGAAGGCTCTACCCACAACTGCTCCTGAGGAGAAGCAGCCTGCCACTGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
3UTR CCA 72 bp TGCCACCACAGGAGACAGGCTGGGATGAACCTCACATaGCACCCTGATGGATGGGGAGCCAGGGACAAGTCC +
Preference number: 3 (lower is better)
Translates to: CHHRRQAGMNLT*HPDGWGARDKS
Trigger: GGACTTGTCCCTGGCTCCCCATCCATCAGGGTGCCATGTGAGGTTCATCCCAGCCTGTCTCCTGTGGTGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
3UTR CCA 72 bp AATGGACAGGGCCTTGGCTTGAGGGAGAACAAGGCCTaGGCACACAAAGGCCTCCAGAGGCTAGGAGCCAAG +
Preference number: 3 (lower is better)
Translates to: NGQGLGLRENKA*AHKGLQRLGAK
Trigger: CTTGGCTCCTAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTTGTTCTCCCTCAAGCCAAGGCCCTGTCCATT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CCA 90 bp GATGGGGAGCCAGGGACAAGTCCTAGAGTGAGGCTGGGTGCCTTGGAGGGGAGGGGGCTCCTGGGGGCCTaGGGCCCAGTCTCAGTCTGT +
Preference number: 4 (lower is better)
Translates to: DGEPGTSPRVRLGALEGRGLLGA*GPVSVC
Trigger: ACAGACTGAGACTGGGCCCCAGGCCCCCAGGAGCCC...CCTCCCCTCCAAGGCACCCAGCCTCACTCTAGGACTTGTCCCTGGCTCCCCATC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CCA 90 bp AAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGAGCCAAGTGGGAGGAGCTAGGGAGGTGGGGAGGCTaGGGCCTCAGCTCCGGAAGC +
Preference number: 4 (lower is better)
Translates to: KAWAHKGLQRLGAKWEELGRWGG*GLSSGS
Trigger: GCTTCCGGAGCTGAGGCCCCAGCCTCCCCACCTCCC...TAGCTCCTCCCACTTGGCTCCTAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CCA 90 bp AAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGAGCCAAGTGGGAGGAGCTATGGTGCGAGGGCTCCTaGGGGCCTGGGGCCCAGTCT +
Preference number: 4 (lower is better)
Translates to: KAWAHKGLQRLGAKWEELWCEGS*GPGAQS
Trigger: AGACTGGGCCCCAGGCCCCCAGGAGCCCTCGCACCA...TAGCTCCTCCCACTTGGCTCCTAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR TCA 90 bp GCAGGAGTCCTGGGTAGGGAGGGTTGGGGGCACCAGTCCTACAGCTGCCAATGCACAGGACACGAGCAGTaGGGCCTCCCTGACCTGCCT +
Preference number: 4 (lower is better)
Translates to: AGVLGREGWGHQSYSCQCTGHEQ*GLPDLP
Trigger: AGGCAGGTCAGGGAGGCCTCACTGCTCGTGTCCTGT...GCATTGGCAGCTGTAGGACTGGTGCCCCCAACCCTCCCTACCCAGGACTCCTGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR GCA 90 bp GATGGGGAGCCAGGGACAAGTCCTAGAGTGAGGCTGGGTGCCTTGGAGGGGAGGCCTGGCCTTGCAGGCTaGAGTTGTCCACCAGGGACC +
Preference number: 4 (lower is better)
Translates to: DGEPGTSPRVRLGALEGRPGLAG*SCPPGT
Trigger: GGTCCCTGGTGGACAACTGCAGCCTGCAAGGCCAGG...CCTCCCCTCCAAGGCACCCAGCCTCACTCTAGGACTTGTCCCTGGCTCCCCATC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR GCA 90 bp GCAGGAGTCCTGGGTAGGGAGGGTTGGGGGCACCAGTCCTACAGCTGCCAATGCAGAGGGGCTTCAAGCTaGTGGGTCCCCCTGCTGGTC +
Preference number: 4 (lower is better)
Translates to: AGVLGREGWGHQSYSCQCRGASS*WVPLLV
Trigger: GACCAGCAGGGGGACCCAGCAGCTTGAAGCCCCTCT...GCATTGGCAGCTGTAGGACTGGTGCCCCCAACCCTCCCTACCCAGGACTCCTGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CCA 90 bp GATGGGGAGCCAGGGACAAGTCCTAGAGTGAGGCTGGGTGCCTTGGAGGGGAGGTCGAGGGGTACCAGGTaGGGCTTTCCCTCCCCCAGT +
Preference number: 4 (lower is better)
Translates to: DGEPGTSPRVRLGALEGRSRGTR*GFPSPS
Trigger: ACTGGGGGAGGGAAAGCCCCACCTGGTACCCCTCGA...CCTCCCCTCCAAGGCACCCAGCCTCACTCTAGGACTTGTCCCTGGCTCCCCATC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CCA 90 bp CAGGCTGGGATGAACCTCACATGGCACCCTGATGGATGGGGAGCCAGGGACAAGCCAGGCTCCGCTGGATaGCCCGGCTGGCCAAGGAAC +
Preference number: 4 (lower is better)
Translates to: QAGMNLTWHPDGWGARDKPGSAG*PGWPRN
Trigger: GTTCCTTGGCCAGCCGGGCCATCCAGCGGAGCCTGG...CTTGTCCCTGGCTCCCCATCCATCAGGGTGCCATGTGAGGTTCATCCCAGCCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CCA 90 bp GCAGGAGTCCTGGGTAGGGAGGGTTGGGGGCACCAGTCCTACAGCTGCCAATGCCTGAGGCCTTGCTTCTaGGGGCTCCATCACTGGGCC +
Preference number: 4 (lower is better)
Translates to: AGVLGREGWGHQSYSCQCLRPCF*GLHHWA
Trigger: GGCCCAGTGATGGAGCCCCCAGAAGCAAGGCCTCAG...GCATTGGCAGCTGTAGGACTGGTGCCCCCAACCCTCCCTACCCAGGACTCCTGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR TCA 90 bp CAGGCTGGGATGAACCTCACATGGCACCCTGATGGATGGGGAGCCAGGGACAAGGCAGTGAGGCCTCCCTaGCCTGCCTGGCTGTTGCTG +
Preference number: 4 (lower is better)
Translates to: QAGMNLTWHPDGWGARDKAVRPP*PAWLLL
Trigger: CAGCAACAGCCAGGCAGGTCAGGGAGGCCTCACTGC...CTTGTCCCTGGCTCCCCATCCATCAGGGTGCCATGTGAGGTTCATCCCAGCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR TCA 90 bp GCAGGAGTCCTGGGTAGGGAGGGTTGGGGGCACCAGTCCTACAGCTGCCAATGCCTTTCCCTCCCCCAGTaGTTGCTGGACGAAGGCGGT +
Preference number: 4 (lower is better)
Translates to: AGVLGREGWGHQSYSCQCLSLPQ*LLDEGG
Trigger: ACCGCCTTCGTCCAGCAATCACTGGGGGAGGGAAAG...GCATTGGCAGCTGTAGGACTGGTGCCCCCAACCCTCCCTACCCAGGACTCCTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR TCA 90 bp GCAGGAGTCCTGGGTAGGGAGGGTTGGGGGCACCAGTCCTACAGCTGCCAATGCACTGGAGCCTGTTCCTaGGCCTGTCCCAGAGACAGC +
Preference number: 4 (lower is better)
Translates to: AGVLGREGWGHQSYSCQCTGACS*ACPRDS
Trigger: GCTGTCTCTGGGACAGGCTCAGGAACAGGCTCCAGT...GCATTGGCAGCTGTAGGACTGGTGCCCCCAACCCTCCCTACCCAGGACTCCTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR GCA 90 bp GCAGGAGTCCTGGGTAGGGAGGGTTGGGGGCACCAGTCCTACAGCTGCCAATGCGAGGGCCTACCTTCCTaGCCAGAGCCACAGCAGTGT +
Preference number: 4 (lower is better)
Translates to: AGVLGREGWGHQSYSCQCEGLPS*PEPQQC
Trigger: ACACTGCTGTGGCTCTGGGCAGGAAGGTAGGCCCTC...GCATTGGCAGCTGTAGGACTGGTGCCCCCAACCCTCCCTACCCAGGACTCCTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR GCA 90 bp AAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGAGCCAAGTGGGAGGAGCTAACCTGGATAATGGGATaGGCCGGGCCCGCCAGGAGG +
Preference number: 4 (lower is better)
Translates to: KAWAHKGLQRLGAKWEELTWIMG*AGPARR
Trigger: CCTCCTGGCGGGCCCGGCGCATCCCATTATCCAGGT...TAGCTCCTCCCACTTGGCTCCTAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CCA 90 bp AAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGAGCCAAGTGGGAGGAGCTAGCTTCCCTGAGTCCTTaGTGCGAGGGCTCCTGGGGG +
Preference number: 4 (lower is better)
Translates to: KAWAHKGLQRLGAKWEELASLSP*CEGSWG
Trigger: CCCCCAGGAGCCCTCGCACCAAGGACTCAGGGAAGC...TAGCTCCTCCCACTTGGCTCCTAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR TCA 90 bp GCAGGAGTCCTGGGTAGGGAGGGTTGGGGGCACCAGTCCTACAGCTGCCAATGCTGTTGCTGGTCTGACTaGAGCCACCACTGGCCCCAA +
Preference number: 4 (lower is better)
Translates to: AGVLGREGWGHQSYSCQCCCWSD*SHHWPQ
Trigger: TTGGGGCCAGTGGTGGCTTCAGTCAGACCAGCAACA...GCATTGGCAGCTGTAGGACTGGTGCCCCCAACCCTCCCTACCCAGGACTCCTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR GCA 90 bp GCAGGAGTCCTGGGTAGGGAGGGTTGGGGGCACCAGTCCTACAGCTGCCAATGCTCTTGTCCCCAGGAATaGTGGTATTGCCCCGCCTCC +
Preference number: 4 (lower is better)
Translates to: AGVLGREGWGHQSYSCQCSCPQE*WYCPAS
Trigger: GGAGGCGGGGCAATACCAGCATTCCTGGGGACAAGA...GCATTGGCAGCTGTAGGACTGGTGCCCCCAACCCTCCCTACCCAGGACTCCTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR GCA 90 bp GCAGGAGTCCTGGGTAGGGAGGGTTGGGGGCACCAGTCCTACAGCTGCCAATGCGGCTGTAGGGGCAGTTaGTGTTGCTGCAGATCCCCT +
Preference number: 4 (lower is better)
Translates to: AGVLGREGWGHQSYSCQCGCRGS*CCCRSP
Trigger: AGGGGATCTGCAGCAACAGCAACTGCCCCTACAGCC...GCATTGGCAGCTGTAGGACTGGTGCCCCCAACCCTCCCTACCCAGGACTCCTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CCA 90 bp CAGGCTGGGATGAACCTCACATGGCACCCTGATGGATGGGGAGCCAGGGACAAGCGCCACGAAGGGCCATaGTGTGAGGAGAAGCCCCTC +
Preference number: 4 (lower is better)
Translates to: QAGMNLTWHPDGWGARDKRHEGP*CEEKPL
Trigger: GAGGGGCTTCTCCTCACACCATGGCCCTTCGTGGCG...CTTGTCCCTGGCTCCCCATCCATCAGGGTGCCATGTGAGGTTCATCCCAGCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CCA 90 bp AAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGAGCCAAGTGGGAGGAGCTAGGGGCTTCAAGCTGCTaGGTCCCCCTGCTGGTCTGT +
Preference number: 4 (lower is better)
Translates to: KAWAHKGLQRLGAKWEELGASSC*VPLLVC
Trigger: ACAGACCAGCAGGGGGACCCAGCAGCTTGAAGCCCC...TAGCTCCTCCCACTTGGCTCCTAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CCA 90 bp GATGGGGAGCCAGGGACAAGTCCTAGAGTGAGGCTGGGTGCCTTGGAGGGGAGGTGGAGCAGCTGGCACTaGGAGCCACGGGGACAAATA +
Preference number: 4 (lower is better)
Translates to: DGEPGTSPRVRLGALEGRWSSWH*EPRGQI
Trigger: TATTTGTCCCCGTGGCTCCCAGTGCCAGCTGCTCCA...CCTCCCCTCCAAGGCACCCAGCCTCACTCTAGGACTTGTCCCTGGCTCCCCATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CCA 90 bp GATGGGGAGCCAGGGACAAGTCCTAGAGTGAGGCTGGGTGCCTTGGAGGGGAGGCGCTTCTGGTTACGATaGAGCAGCTGGCACTGGGAG +
Preference number: 4 (lower is better)
Translates to: DGEPGTSPRVRLGALEGRRFWLR*SSWHWE
Trigger: CTCCCAGTGCCAGCTGCTCCATCGTAACCAGAAGCG...CCTCCCCTCCAAGGCACCCAGCCTCACTCTAGGACTTGTCCCTGGCTCCCCATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR TCA 90 bp GCACCAGTCCTACAGCTGCCAATGCCACCACAGGAGACAGGCTGGGATGAACCTCGAAGGGCCATGGTGTaGGGAGAAGCCCCTCCGACT +
Preference number: 4 (lower is better)
Translates to: APVLQLPMPPQETGWDEPRRAMV*GEAPPT
Trigger: AGTCGGAGGGGCTTCTCCTCACACCATGGCCCTTCG...AGGTTCATCCCAGCCTGTCTCCTGTGGTGGCATTGGCAGCTGTAGGACTGGTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR TCA 90 bp GAACAAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGAGCCAAGTGGGAGGATGGCTGTTGCTGGTCTaGCTGAAGCCACCACTGGCC +
Preference number: 4 (lower is better)
Translates to: EQGLGTQRPPEARSQVGGWLLLV*LKPPLA
Trigger: GGCCAGTGGTGGCTTCAGTCAGACCAGCAACAGCCA...TCCTCCCACTTGGCTCCTAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTTGTTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR TCA 90 bp CAGGCTGGGATGAACCTCACATGGCACCCTGATGGATGGGGAGCCAGGGACAAGTGCTGGTCTGTCCCCTaGTGTGGGCCTAGATGGGAC +
Preference number: 4 (lower is better)
Translates to: QAGMNLTWHPDGWGARDKCWSVP*CGPRWD
Trigger: GTCCCATCTAGGCCCACATCAGGGGACAGACCAGCA...CTTGTCCCTGGCTCCCCATCCATCAGGGTGCCATGTGAGGTTCATCCCAGCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR GCA 90 bp GATGGGGAGCCAGGGACAAGTCCTAGAGTGAGGCTGGGTGCCTTGGAGGGGAGGTGCAGACTTCAGCCTTaGGGGACACGTACACATGGC +
Preference number: 4 (lower is better)
Translates to: DGEPGTSPRVRLGALEGRCRLQP*GTRTHG
Trigger: GCCATGTGTACGTGTCCCGCAAGGCTGAAGTCTGCA...CCTCCCCTCCAAGGCACCCAGCCTCACTCTAGGACTTGTCCCTGGCTCCCCATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CCA 90 bp CAGGCTGGGATGAACCTCACATGGCACCCTGATGGATGGGGAGCCAGGGACAAGTTGCCAGGCTCCTTCTaGCAGACCAAGAGGGGGTCG +
Preference number: 4 (lower is better)
Translates to: QAGMNLTWHPDGWGARDKLPGSF*QTKRGS
Trigger: CGACCCCCTCTTGGTCTGCCAGAAGGAGCCTGGCAA...CTTGTCCCTGGCTCCCCATCCATCAGGGTGCCATGTGAGGTTCATCCCAGCCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CCA 90 bp GAACAAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGAGCCAAGTGGGAGGATGGAAGCTTCCTTGGTaGAGAGGTGGGTCCGGCTGG +
Preference number: 4 (lower is better)
Translates to: EQGLGTQRPPEARSQVGGWKLPW*RGGSGW
Trigger: CCAGCCGGACCCACCTCTCCACCAAGGAAGCTTCCA...TCCTCCCACTTGGCTCCTAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTTGTTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CCA 90 bp CAGGCTGGGATGAACCTCACATGGCACCCTGATGGATGGGGAGCCAGGGACAAGCACTGGAAGCTTCCTTaGTGGAGAGGTGGGTCCGGC +
Preference number: 4 (lower is better)
Translates to: QAGMNLTWHPDGWGARDKHWKLP*WRGGSG
Trigger: GCCGGACCCACCTCTCCACCAAGGAAGCTTCCAGTG...CTTGTCCCTGGCTCCCCATCCATCAGGGTGCCATGTGAGGTTCATCCCAGCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CCA 90 bp CAGGCTGGGATGAACCTCACATGGCACCCTGATGGATGGGGAGCCAGGGACAAGGCTTGCAGAGGCCACTaGAGCCTGTTCCTGAGCCTG +
Preference number: 4 (lower is better)
Translates to: QAGMNLTWHPDGWGARDKACRGH*SLFLSL
Trigger: CAGGCTCAGGAACAGGCTCCAGTGGCCTCTGCAAGC...CTTGTCCCTGGCTCCCCATCCATCAGGGTGCCATGTGAGGTTCATCCCAGCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CCA 90 bp GAACAAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGAGCCAAGTGGGAGGACTCAGTCTGTCCTCCTaGGCTTGGGGAGGAGTGCAG +
Preference number: 4 (lower is better)
Translates to: EQGLGTQRPPEARSQVGGLSLSS*AWGGVQ
Trigger: CTGCACTCCTCCCCAAGCCCAGGAGGACAGACTGAG...TCCTCCCACTTGGCTCCTAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTTGTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR TCA 90 bp GCACCAGTCCTACAGCTGCCAATGCCACCACAGGAGACAGGCTGGGATGAACCTAGAGCCACAGCAGTGTaGTGGGGCAGGACAGATGGG +
Preference number: 4 (lower is better)
Translates to: APVLQLPMPPQETGWDEPRATAV*WGRTDG
Trigger: CCCATCTGTCCTGCCCCATCACACTGCTGTGGCTCT...AGGTTCATCCCAGCCTGTCTCCTGTGGTGGCATTGGCAGCTGTAGGACTGGTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR TCA 90 bp GGCCTTGGCTTGAGGGAGAACAAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGAAGCTGGCTGGTCTaGGTGGCCAGTGTTTGCTCT +
Preference number: 4 (lower is better)
Translates to: GLGLRENKAWAHKGLQRLGSWLV*VASVCS
Trigger: AGAGCAAACACTGGCCACTCAGACCAGCCAGCTTCC...TAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTTGTTCTCCCTCAAGCCAAGGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR TCA 90 bp GAACAAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGAGCCAAGTGGGAGGAGGGACTGGGGAGAGCTaGGAAGTATGGTCCTTGCTG +
Preference number: 4 (lower is better)
Translates to: EQGLGTQRPPEARSQVGGGTGES*EVWSLL
Trigger: CAGCAAGGACCATACTTCTCAGCTCTCCCCAGTCCC...TCCTCCCACTTGGCTCCTAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTTGTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR GCA 90 bp AAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGAGCCAAGTGGGAGGAGCTAGGTTCTTCCTGGCCTTaGAGGCTGCAGTTGTCCACC +
Preference number: 4 (lower is better)
Translates to: KAWAHKGLQRLGAKWEELGSSWP*RLQLST
Trigger: GGTGGACAACTGCAGCCTGCAAGGCCAGGAAGAACC...TAGCTCCTCCCACTTGGCTCCTAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR GCA 90 bp AAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGAGCCAAGTGGGAGGAGCTATCACTACCCGAGGCTTaGCAGGCTCCTTCTGGCAGA +
Preference number: 4 (lower is better)
Translates to: KAWAHKGLQRLGAKWEELSLPEA*QAPSGR
Trigger: TCTGCCAGAAGGAGCCTGGCAAGCCTCGGGTAGTGA...TAGCTCCTCCCACTTGGCTCCTAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR GCA 90 bp GATGGGGAGCCAGGGACAAGTCCTAGAGTGAGGCTGGGTGCCTTGGAGGGGAGGAAGTATGGTCCTTGCTaGCAGCCTCAGACTGCCAAC +
Preference number: 4 (lower is better)
Translates to: DGEPGTSPRVRLGALEGRKYGPC*QPQTAN
Trigger: GTTGGCAGTCTGAGGCTGGCAGCAAGGACCATACTT...CCTCCCCTCCAAGGCACCCAGCCTCACTCTAGGACTTGTCCCTGGCTCCCCATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR GCA 90 bp GATGGGGAGCCAGGGACAAGTCCTAGAGTGAGGCTGGGTGCCTTGGAGGGGAGGACAGAACCCCTCCAATaGAGCGGTAGCCTTTGTTGC +
Preference number: 4 (lower is better)
Translates to: DGEPGTSPRVRLGALEGRTEPLQ*SGSLCC
Trigger: GCAACAAAGGCTACCGCTGCATTGGAGGGGTTCTGT...CCTCCCCTCCAAGGCACCCAGCCTCACTCTAGGACTTGTCCCTGGCTCCCCATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR GCA 90 bp GATGGGGAGCCAGGGACAAGTCCTAGAGTGAGGCTGGGTGCCTTGGAGGGGAGGCGCCACGGTTACACCTaGCAAAGCGGTTGTAGTACA +
Preference number: 4 (lower is better)
Translates to: DGEPGTSPRVRLGALEGRRHGYT*QSGCST
Trigger: TGTACTACAACCGCTTTGGCAGGTGTAACCGTGGCG...CCTCCCCTCCAAGGCACCCAGCCTCACTCTAGGACTTGTCCCTGGCTCCCCATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CCA 90 bp GAACAAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGAGCCAAGTGGGAGGATCCAAGGACCCCCGCTaGACCCCTGAAGCATTGATG +
Preference number: 4 (lower is better)
Translates to: EQGLGTQRPPEARSQVGGSKDPR*TPEALM
Trigger: CATCAATGCTTCAGGGGTCCAGCGGGGGTCCTTGGA...TCCTCCCACTTGGCTCCTAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTTGTTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CCA 90 bp AAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGAGCCAAGTGGGAGGAGCTAATGGGGCAGGACAGATaGGAAGTGTACCCTGAGGGC +
Preference number: 4 (lower is better)
Translates to: KAWAHKGLQRLGAKWEELMGQDR*EVYPEG
Trigger: GCCCTCAGGGTACACTTCCCATCTGTCCTGCCCCAT...TAGCTCCTCCCACTTGGCTCCTAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CCA 90 bp GCACCAGTCCTACAGCTGCCAATGCCACCACAGGAGACAGGCTGGGATGAACCTGAGGCCAGGCTTGGATaGTGTGGCCAGTTTCTCCGG +
Preference number: 4 (lower is better)
Translates to: APVLQLPMPPQETGWDEPEARLG*CGQFLR
Trigger: CCGGAGAAACTGGCCACACCATCCAAGCCTGGCCTC...AGGTTCATCCCAGCCTGTCTCCTGTGGTGGCATTGGCAGCTGTAGGACTGGTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CCA 90 bp GCACCAGTCCTACAGCTGCCAATGCCACCACAGGAGACAGGCTGGGATGAACCTTGTCCCCAGGAATGCTaGTATTGCCCCGCCTCCGGA +
Preference number: 4 (lower is better)
Translates to: APVLQLPMPPQETGWDEPCPQEC*YCPASG
Trigger: TCCGGAGGCGGGGCAATACCAGCATTCCTGGGGACA...AGGTTCATCCCAGCCTGTCTCCTGTGGTGGCATTGGCAGCTGTAGGACTGGTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR TCA 90 bp CAGGCTGGGATGAACCTCACATGGCACCCTGATGGATGGGGAGCCAGGGACAAGTGCGGTAGCGGGTCTTaGTCACCTTATTGGAGGGTG +
Preference number: 4 (lower is better)
Translates to: QAGMNLTWHPDGWGARDKCGSGS*SPYWRV
Trigger: CACCCTCCAATAAGGTGATCAAGACCCGCTACCGCA...CTTGTCCCTGGCTCCCCATCCATCAGGGTGCCATGTGAGGTTCATCCCAGCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR GCA 90 bp GGCCTTGGCTTGAGGGAGAACAAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGAGAAGTATGGTCCTTaGTGCCAGCCTCAGACTGCC +
Preference number: 4 (lower is better)
Translates to: GLGLRENKAWAHKGLQRLEKYGP*CQPQTA
Trigger: GGCAGTCTGAGGCTGGCAGCAAGGACCATACTTCTC...TAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTTGTTCTCCCTCAAGCCAAGGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR GCA 90 bp CAGGCTGGGATGAACCTCACATGGCACCCTGATGGATGGGGAGCCAGGGACAAGCTCGGACAAATCTGGTaGACACGGCCACCTTCTCAG +
Preference number: 4 (lower is better)
Translates to: QAGMNLTWHPDGWGARDKLGQIW*TRPPSQ
Trigger: CTGAGAAGGTGGCCGTGTGCACCAGATTTGTCCGAG...CTTGTCCCTGGCTCCCCATCCATCAGGGTGCCATGTGAGGTTCATCCCAGCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CCA 90 bp AAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGAGCCAAGTGGGAGGAGCTAAGCAGGATCGCTGGCTaGGTCAGAAGATTCCACAGG +
Preference number: 4 (lower is better)
Translates to: KAWAHKGLQRLGAKWEELSRIAG*VRRFHR
Trigger: CCTGTGGAATCTTCTGACCCAGCCAGCGATCCTGCT...TAGCTCCTCCCACTTGGCTCCTAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CCA 90 bp GGCCTTGGCTTGAGGGAGAACAAGGCCTGGGCACACAAAGGCCTCCAGAGGCTACACCTTGGTTCTTCCTaGCCTTGCAGGCTGCAGTTG +
Preference number: 4 (lower is better)
Translates to: GLGLRENKAWAHKGLQRLHLGSS*PCRLQL
Trigger: CAACTGCAGCCTGCAAGGCCAGGAAGAACCAAGGTG...TAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTTGTTCTCCCTCAAGCCAAGGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CCA 90 bp AAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGAGCCAAGTGGGAGGAGCTACCCAAGGAAGCTGGCTaGTCTGAGTGGCCAGTGTTT +
Preference number: 4 (lower is better)
Translates to: KAWAHKGLQRLGAKWEELPKEAG*SEWPVF
Trigger: AAACACTGGCCACTCAGACCAGCCAGCTTCCTTGGG...TAGCTCCTCCCACTTGGCTCCTAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CCA 90 bp GGCCTTGGCTTGAGGGAGAACAAGGCCTGGGCACACAAAGGCCTCCAGAGGCTATCCACTTGTACTTGCTaGGAGAGAGGCCAGGCTTGG +
Preference number: 4 (lower is better)
Translates to: GLGLRENKAWAHKGLQRLSTCTC*ERGQAW
Trigger: CCAAGCCTGGCCTCTCTCCCAGCAAGTACAAGTGGA...TAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTTGTTCTCCCTCAAGCCAAGGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CCA 90 bp GGCCTTGGCTTGAGGGAGAACAAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGGCCTAGATGGGACTaGGGAGAGCTGAGAAGTATG +
Preference number: 4 (lower is better)
Translates to: GLGLRENKAWAHKGLQRLGPRWD*GELRSM
Trigger: CATACTTCTCAGCTCTCCCCAGTCCCATCTAGGCCC...TAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTTGTTCTCCCTCAAGCCAAGGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CCA 90 bp AAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGAGCCAAGTGGGAGGAGCTATGCCTCGGACAAATCTaGTGCACACGGCCACCTTCT +
Preference number: 4 (lower is better)
Translates to: KAWAHKGLQRLGAKWEELCLGQI*CTRPPS
Trigger: AGAAGGTGGCCGTGTGCACCAGATTTGTCCGAGGCA...TAGCTCCTCCCACTTGGCTCCTAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CCA 90 bp GATGGGGAGCCAGGGACAAGTCCTAGAGTGAGGCTGGGTGCCTTGGAGGGGAGGGCACTTTGCACCCAATaGGCAGTAGCCTTTGAGGAA +
Preference number: 4 (lower is better)
Translates to: DGEPGTSPRVRLGALEGRALCTQ*AVAFEE
Trigger: TTCCTCAAAGGCTACTGCCCATTGGGTGCAAAGTGC...CCTCCCCTCCAAGGCACCCAGCCTCACTCTAGGACTTGTCCCTGGCTCCCCATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CCA 90 bp GGCCTTGGCTTGAGGGAGAACAAGGCCTGGGCACACAAAGGCCTCCAGAGGCTACAGGGAGATGAAGGATaGCAGCTTGCAGAGGCCACT +
Preference number: 4 (lower is better)
Translates to: GLGLRENKAWAHKGLQRLQGDEG*QLAEAT
Trigger: AGTGGCCTCTGCAAGCTGCCATCCTTCATCTCCCTG...TAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTTGTTCTCCCTCAAGCCAAGGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR TCA 90 bp GGCCTTGGCTTGAGGGAGAACAAGGCCTGGGCACACAAAGGCCTCCAGAGGCTACCGTGGGCTCTTTTCTaGGGCAGCTACCCATTTGTA +
Preference number: 4 (lower is better)
Translates to: GLGLRENKAWAHKGLQRLPWALF*GSYPFV
Trigger: TACAAATGGGTAGCTGCCTCAGAAAAGAGCCCACGG...TAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTTGTTCTCCCTCAAGCCAAGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR TCA 90 bp GCACCAGTCCTACAGCTGCCAATGCCACCACAGGAGACAGGCTGGGATGAACCTAGGAGTGCAGGGAGATaGAGGATGGCAGCTTGCAGA +
Preference number: 4 (lower is better)
Translates to: APVLQLPMPPQETGWDEPRSAGR*RMAACR
Trigger: TCTGCAAGCTGCCATCCTTCATCTCCCTGCACTCCT...AGGTTCATCCCAGCCTGTCTCCTGTGGTGGCATTGGCAGCTGTAGGACTGGTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR GCA 90 bp CAGGCTGGGATGAACCTCACATGGCACCCTGATGGATGGGGAGCCAGGGACAAGCAAGGGAGTATTTCTTaGGCCACGAAGGGCCATGGT +
Preference number: 4 (lower is better)
Translates to: QAGMNLTWHPDGWGARDKQGSIS*ATKGHG
Trigger: ACCATGGCCCTTCGTGGCGCAAGAAATACTCCCTTG...CTTGTCCCTGGCTCCCCATCCATCAGGGTGCCATGTGAGGTTCATCCCAGCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR GCA 90 bp GCACCAGTCCTACAGCTGCCAATGCCACCACAGGAGACAGGCTGGGATGAACCTTGCTGGGGTTCAGGATaGTGGCTATCCTCAGACCTG +
Preference number: 4 (lower is better)
Translates to: APVLQLPMPPQETGWDEPCWGSG*WLSSDL
Trigger: CAGGTCTGAGGATAGCCAGCATCCTGAACCCCAGCA...AGGTTCATCCCAGCCTGTCTCCTGTGGTGGCATTGGCAGCTGTAGGACTGGTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR GCA 90 bp GAACAAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGAGCCAAGTGGGAGGAAGGGGCAGTTGCTGTTaGTGCAGATCCCCTTCAGAA +
Preference number: 4 (lower is better)
Translates to: EQGLGTQRPPEARSQVGGRGSCC*CRSPSE
Trigger: TTCTGAAGGGGATCTGCAGCAACAGCAACTGCCCCT...TCCTCCCACTTGGCTCCTAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTTGTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CCA 90 bp GCAGGAGTCCTGGGTAGGGAGGGTTGGGGGCACCAGTCCTACAGCTGCCAATGCTTTTCCGAAACTTGCTaGTTCGACAGGACACGAGCA +
Preference number: 4 (lower is better)
Translates to: AGVLGREGWGHQSYSCQCFSETC*FDRTRA
Trigger: TGCTCGTGTCCTGTCGAACCAGCAAGTTTCGGAAAA...GCATTGGCAGCTGTAGGACTGGTGCCCCCAACCCTCCCTACCCAGGACTCCTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CCA 90 bp AAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGAGCCAAGTGGGAGGAGCTACAACTGTACCCAAAGTaGCCTTGTTCCCGCTCTCCA +
Preference number: 4 (lower is better)
Translates to: KAWAHKGLQRLGAKWEELQLYPK*PCSRSP
Trigger: TGGAGAGCGGGAACAAGGCCACTTTGGGTACAGTTG...TAGCTCCTCCCACTTGGCTCCTAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CCA 90 bp AAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGAGCCAAGTGGGAGGAGCTACGTCGCTGGGTAAGATaGTTTTTGCTGGTGGTGGCA +
Preference number: 4 (lower is better)
Translates to: KAWAHKGLQRLGAKWEELRRWVR*FLLVVA
Trigger: TGCCACCACCAGCAAAAACCATCTTACCCAGCGACG...TAGCTCCTCCCACTTGGCTCCTAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR TCA 90 bp CAGGCTGGGATGAACCTCACATGGCACCCTGATGGATGGGGAGCCAGGGACAAGTATTCTGATCTGGACTaGGCTGGACCTGTCTCTCCA +
Preference number: 4 (lower is better)
Translates to: QAGMNLTWHPDGWGARDKYSDLD*AGPVSP
Trigger: TGGAGAGACAGGTCCAGCTCAGTCCAGATCAGAATA...CTTGTCCCTGGCTCCCCATCCATCAGGGTGCCATGTGAGGTTCATCCCAGCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR GCA 90 bp GCACCAGTCCTACAGCTGCCAATGCCACCACAGGAGACAGGCTGGGATGAACCTGGTGGAATCCCCATGTaGACACTGGAAGCTTCCTTG +
Preference number: 4 (lower is better)
Translates to: APVLQLPMPPQETGWDEPGGIPM*TLEASL
Trigger: CAAGGAAGCTTCCAGTGTGCACATGGGGATTCCACC...AGGTTCATCCCAGCCTGTCTCCTGTGGTGGCATTGGCAGCTGTAGGACTGGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR GCA 90 bp GGCCTTGGCTTGAGGGAGAACAAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGCAGTTGCTGTTGCTaGAGATCCCCTTCAGAAAGT +
Preference number: 4 (lower is better)
Translates to: GLGLRENKAWAHKGLQRLGSCCC*RSPSES
Trigger: ACTTTCTGAAGGGGATCTGCAGCAACAGCAACTGCC...TAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTTGTTCTCCCTCAAGCCAAGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR GCA 90 bp AAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGAGCCAAGTGGGAGGAGCTAGGACACAGCAGCGTGTaGTTCTTCTTGCACTTTGCA +
Preference number: 4 (lower is better)
Translates to: KAWAHKGLQRLGAKWEELGHSSV*FFLHFA
Trigger: TGCAAAGTGCAAGAAGAAGCACACGCTGCTGTGTCC...TAGCTCCTCCCACTTGGCTCCTAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CCA 90 bp GAACAAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGAGCCAAGTGGGAGGATCAACCTCACTTCCTTaGGGTCTTTGGCCACTCCAA +
Preference number: 4 (lower is better)
Translates to: EQGLGTQRPPEARSQVGGSTSLP*GLWPLQ
Trigger: TTGGAGTGGCCAAAGACCCCAAGGAAGTGAGGTTGA...TCCTCCCACTTGGCTCCTAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTTGTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CCA 90 bp GCACCAGTCCTACAGCTGCCAATGCCACCACAGGAGACAGGCTGGGATGAACCTCACTGTAACCCACCTTaGTTCTTCCTGGCCTTGCAG +
Preference number: 4 (lower is better)
Translates to: APVLQLPMPPQETGWDEPHCNPP*FFLALQ
Trigger: CTGCAAGGCCAGGAAGAACCAAGGTGGGTTACAGTG...AGGTTCATCCCAGCCTGTCTCCTGTGGTGGCATTGGCAGCTGTAGGACTGGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CCA 90 bp GGCCTTGGCTTGAGGGAGAACAAGGCCTGGGCACACAAAGGCCTCCAGAGGCTATGCATCAGACCCTTGTaGGGAGTCTTCCTTAGAACC +
Preference number: 4 (lower is better)
Translates to: GLGLRENKAWAHKGLQRLCIRPL*GVFLRT
Trigger: GGTTCTAAGGAAGACTCCCCACAAGGGTCTGATGCA...TAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTTGTTCTCCCTCAAGCCAAGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CCA 90 bp GAACAAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGAGCCAAGTGGGAGGACACCTTATTGGAGGGTaGAATCCCCATGTGCACACT +
Preference number: 4 (lower is better)
Translates to: EQGLGTQRPPEARSQVGGHLIGG*NPHVHT
Trigger: AGTGTGCACATGGGGATTCCACCCTCCAATAAGGTG...TCCTCCCACTTGGCTCCTAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTTGTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CCA 90 bp GCAGGAGTCCTGGGTAGGGAGGGTTGGGGGCACCAGTCCTACAGCTGCCAATGCCAGGCATCTTTTCCTTaGACACATGGTGAGAGAAAG +
Preference number: 4 (lower is better)
Translates to: AGVLGREGWGHQSYSCQCQASFP*THGERK
Trigger: CTTTCTCTCACCATGTGTCCAAGGAAAAGATGCCTG...GCATTGGCAGCTGTAGGACTGGTGCCCCCAACCCTCCCTACCCAGGACTCCTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR TCA 90 bp GCACCAGTCCTACAGCTGCCAATGCCACCACAGGAGACAGGCTGGGATGAACCTATGGGCAGTAGCCTTTaGGGAAGTCACTGCAGACTT +
Preference number: 4 (lower is better)
Translates to: APVLQLPMPPQETGWDEPMGSSL*GSHCRL
Trigger: AAGTCTGCAGTGACTTCCTCAAAGGCTACTGCCCAT...AGGTTCATCCCAGCCTGTCTCCTGTGGTGGCATTGGCAGCTGTAGGACTGGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR GCA 90 bp GAACAAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGAGCCAAGTGGGAGGAACCCATCTGTCTTCTTaGATGTGCCTCGGACAAATC +
Preference number: 4 (lower is better)
Translates to: EQGLGTQRPPEARSQVGGTHLSS*MCLGQI
Trigger: GATTTGTCCGAGGCACATGCAAGAAGACAGATGGGT...TCCTCCCACTTGGCTCCTAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTTGTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR TCA 90 bp GGCCTTGGCTTGAGGGAGAACAAGGCCTGGGCACACAAAGGCCTCCAGAGGCTACTCTTTGGTCTCCAATaGACTGTTCAGAATAGCTGG +
Preference number: 4 (lower is better)
Translates to: GLGLRENKAWAHKGLQRLLFGLQ*TVQNSW
Trigger: CCAGCTATTCTGAACAGTTCATTGGAGACCAAAGAG...TAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTTGTTCTCCCTCAAGCCAAGGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR GCA 90 bp CAGGCTGGGATGAACCTCACATGGCACCCTGATGGATGGGGAGCCAGGGACAAGTTCTTCTCTTTCTTCTaGTTCGCCTGCCGGATGATA +
Preference number: 4 (lower is better)
Translates to: QAGMNLTWHPDGWGARDKFFSFF*FACRMI
Trigger: TATCATCCGGCAGGCGAAGCAGAAGAAAGAGAAGAA...CTTGTCCCTGGCTCCCCATCCATCAGGGTGCCATGTGAGGTTCATCCCAGCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CCA 90 bp GAACAAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGAGCCAAGTGGGAGGAAACCATATTCTGATCTaGACTGAGCTGGACCTGTCT +
Preference number: 4 (lower is better)
Translates to: EQGLGTQRPPEARSQVGGNHILI*TELDLS
Trigger: AGACAGGTCCAGCTCAGTCCAGATCAGAATATGGTT...TCCTCCCACTTGGCTCCTAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTTGTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CCA 90 bp AAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGAGCCAAGTGGGAGGAGCTAACCAAAGGAAGAGCTTaGGGTCTTCTTAACAATGCG +
Preference number: 4 (lower is better)
Translates to: KAWAHKGLQRLGAKWEELTKGRA*GLLNNA
Trigger: CGCATTGTTAAGAAGACCCCAAGCTCTTCCTTTGGT...TAGCTCCTCCCACTTGGCTCCTAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR GCA 90 bp GCACCAGTCCTACAGCTGCCAATGCCACCACAGGAGACAGGCTGGGATGAACCTTGTTTTTCCGAAACTTaGTGGTTCGACAGGACACGA +
Preference number: 4 (lower is better)
Translates to: APVLQLPMPPQETGWDEPCFSET*WFDRTR
Trigger: TCGTGTCCTGTCGAACCAGCAAGTTTCGGAAAAACA...AGGTTCATCCCAGCCTGTCTCCTGTGGTGGCATTGGCAGCTGTAGGACTGGTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR GCA 90 bp GAACAAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGAGCCAAGTGGGAGGAAGCGGTTGTAGTACATaGAGTACTCTCTCTTCTTCT +
Preference number: 4 (lower is better)
Translates to: EQGLGTQRPPEARSQVGGSGCST*STLSSS
Trigger: AGAAGAAGAGAGAGTACTGCATGTACTACAACCGCT...TCCTCCCACTTGGCTCCTAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTTGTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS GCA 90 bp GGCCTTGCTTCTGGGGGCTCCATCACTGGGCCCAGGGATAGGAGGTaGAGCTGTCCGCCGGCCATGTCGCTTCTGGTTACGATGGAGCAG +
Preference number: 5 (lower is better)
Translates to: GLASGGSITGPRDRR*SCPPAMSLLVTMEQ
Trigger: CTGCTCCATCGTAACCAGAAGCGACATGGCCGGCGGACAGCTGCACCTCCTATCCCTGGGCCCAGTGATGGAGCCCCCAGAAGCAAGGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CCA 90 bp GGTGGAATCCCCATGTGCACACTGGAAGCTTCCTTGGTGGAGAGGTaGGTCCGGCTGGACGGCAGGCAGCAGAGCCGGTGCCTGTTGACC +
Preference number: 5 (lower is better)
Translates to: GGIPMCTLEASLVER*VRLDGRQQSRCLLT
Trigger: GGTCAACAGGCACCGGCTCTGCTGCCTGCCGTCCAGCCGGACCCACCTCTCCACCAAGGAAGCTTCCAGTGTGCACATGGGGATTCCACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CAA 90 bp AAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGAGCCAAGTGGGAGGAGCTAGGCTTCCCTGAGTCCTaGGTGCGAGGGCTCCTGGGG +
Preference number: 5 (lower is better)
Translates to: KAWAHKGLQRLGAKWEELGFPES*VRGLLG
Trigger: CCCCAGGAGCCCTCGCACCAAGGACTCAGGGAAGCC...TAGCTCCTCCCACTTGGCTCCTAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CCA 90 bp GTCCGCCGGCCATGTCGCTTCTGGTTACGATGGAGCAGCTGGCACTaGGAGCCACGGGGACAAATACCCCTGCGGGCAAAGTCAGGACAC +
Preference number: 5 (lower is better)
Translates to: VRRPCRFWLRWSSWH*EPRGQIPLRAKSGH
Trigger: GTGTCCTGACTTTGCCCGCAGGGGTATTTGTCCCCGTGGCTCCCAGTGCCAGCTGCTCCATCGTAACCAGAAGCGACATGGCCGGCGGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CCA 90 bp GCAGCTGTCCGCCGGCCATGTCGCTTCTGGTTACGATGGAGCAGCTaGCACTGGGAGCCACGGGGACAAATACCCCTGCGGGCAAAGTCA +
Preference number: 5 (lower is better)
Translates to: AAVRRPCRFWLRWSS*HWEPRGQIPLRAKS
Trigger: TGACTTTGCCCGCAGGGGTATTTGTCCCCGTGGCTCCCAGTGCCAGCTGCTCCATCGTAACCAGAAGCGACATGGCCGGCGGACAGCTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CCA 90 bp ATAGGAGGTGCAGCTGTCCGCCGGCCATGTCGCTTCTGGTTACGATaGAGCAGCTGGCACTGGGAGCCACGGGGACAAATACCCCTGCGG +
Preference number: 5 (lower is better)
Translates to: IGGAAVRRPCRFWLR*SSWHWEPRGQIPLR
Trigger: CCGCAGGGGTATTTGTCCCCGTGGCTCCCAGTGCCAGCTGCTCCATCGTAACCAGAAGCGACATGGCCGGCGGACAGCTGCACCTCCTAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CCA 90 bp GGCCCAGGGATAGGAGGTGCAGCTGTCCGCCGGCCATGTCGCTTCTaGTTACGATGGAGCAGCTGGCACTGGGAGCCACGGGGACAAATA +
Preference number: 5 (lower is better)
Translates to: GPGIGGAAVRRPCRF*LRWSSWHWEPRGQI
Trigger: TATTTGTCCCCGTGGCTCCCAGTGCCAGCTGCTCCATCGTAACCAGAAGCGACATGGCCGGCGGACAGCTGCACCTCCTATCCCTGGGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CCA 90 bp CCTTATTGGAGGGTGGAATCCCCATGTGCACACTGGAAGCTTCCTTaGTGGAGAGGTGGGTCCGGCTGGACGGCAGGCAGCAGAGCCGGT +
Preference number: 5 (lower is better)
Translates to: PYWRVESPCAHWKLP*WRGGSGWTAGSRAG
Trigger: ACCGGCTCTGCTGCCTGCCGTCCAGCCGGACCCACCTCTCCACCAAGGAAGCTTCCAGTGTGCACATGGGGATTCCACCCTCCAATAAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CCA 90 bp TTCTCTTTCTTCTGCTTCGCCTGCCGGATGATAGCCAGGCTCCGCTaGATGGCCCGGCTGGCCAAGGAACGACTGCAGGTGGTAGCAGGG +
Preference number: 5 (lower is better)
Translates to: FSFFCFACRMIARLR*MARLAKERLQVVAG
Trigger: CCCTGCTACCACCTGCAGTCGTTCCTTGGCCAGCCGGGCCATCCAGCGGAGCCTGGCTATCATCCGGCAGGCGAAGCAGAAGAAAGAGAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CAA 90 bp GAACAAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGAGCCAAGTGGGAGGATGGAGGCTAATACCCTaGGGGAGGGAGGTGGGGAGG +
Preference number: 5 (lower is better)
Translates to: EQGLGTQRPPEARSQVGGWRLIP*GREVGR
Trigger: CCTCCCCACCTCCCTCCCCAAGGGTATTAGCCTCCA...TCCTCCCACTTGGCTCCTAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTTGTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CAA 90 bp GAACAAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGAGCCAAGTGGGAGGACCTTGCAGGCTGCAGTaGTCCACCAGGGACCTCAAC +
Preference number: 5 (lower is better)
Translates to: EQGLGTQRPPEARSQVGGPCRLQ*STRDLN
Trigger: GTTGAGGTCCCTGGTGGACAACTGCAGCCTGCAAGG...TCCTCCCACTTGGCTCCTAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTTGTTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CAA 90 bp GGCCTTGGCTTGAGGGAGAACAAGGCCTGGGCACACAAAGGCCTCCAGAGGCTATTCACTACCCGAGGCTaGCCAGGCTCCTTCTGGCAG +
Preference number: 5 (lower is better)
Translates to: GLGLRENKAWAHKGLQRLFTTRG*PGSFWQ
Trigger: CTGCCAGAAGGAGCCTGGCAAGCCTCGGGTAGTGAA...TAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTTGTTCTCCCTCAAGCCAAGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CAA 90 bp GGCCTTGGCTTGAGGGAGAACAAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGAGAGAGGCCAGGCTaGGATGGTGTGGCCAGTTTC +
Preference number: 5 (lower is better)
Translates to: GLGLRENKAWAHKGLQRLGERPG*DGVASF
Trigger: GAAACTGGCCACACCATCCAAGCCTGGCCTCTCTCC...TAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTTGTTCTCCCTCAAGCCAAGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CAA 90 bp AAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGAGCCAAGTGGGAGGAGCTAGCCTTCCACTTGTACTaGCTGGGAGAGAGGCCAGGC +
Preference number: 5 (lower is better)
Translates to: KAWAHKGLQRLGAKWEELAFHLY*LGERPG
Trigger: GCCTGGCCTCTCTCCCAGCAAGTACAAGTGGAAGGC...TAGCTCCTCCCACTTGGCTCCTAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CCA 90 bp CCTTCTGGCAGACCAAGAGGGGGTCGTCCACACTGTAACCCACCTTaGTTCTTCCTGGCCTTGCAGGCTGCAGTTGTCCACCAGGGACCT +
Preference number: 5 (lower is better)
Translates to: PSGRPRGGRPHCNPP*FFLALQAAVVHQGP
Trigger: AGGTCCCTGGTGGACAACTGCAGCCTGCAAGGCCAGGAAGAACCAAGGTGGGTTACAGTGTGGACGACCCCCTCTTGGTCTGCCAGAAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CAA 90 bp GAACAAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGAGCCAAGTGGGAGGATGGTTCTTCCTGGCCTaGCAGGCTGCAGTTGTCCAC +
Preference number: 5 (lower is better)
Translates to: EQGLGTQRPPEARSQVGGWFFLA*QAAVVH
Trigger: GTGGACAACTGCAGCCTGCAAGGCCAGGAAGAACCA...TCCTCCCACTTGGCTCCTAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTTGTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CAA 90 bp GCAGGAGTCCTGGGTAGGGAGGGTTGGGGGCACCAGTCCTACAGCTGCCAATGCGTAGGGCTGTTCTTCTaGTCCCCAGGAATGCTGGTA +
Preference number: 5 (lower is better)
Translates to: AGVLGREGWGHQSYSCQCVGLFF*SPGMLV
Trigger: TACCAGCATTCCTGGGGACAAGAAGAACAGCCCTAC...GCATTGGCAGCTGTAGGACTGGTGCCCCCAACCCTCCCTACCCAGGACTCCTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CAA 90 bp GCAGGAGTCCTGGGTAGGGAGGGTTGGGGGCACCAGTCCTACAGCTGCCAATGCACCTGCATCAGACCCTaGTGGGGAGTCTTCCTTAGA +
Preference number: 5 (lower is better)
Translates to: AGVLGREGWGHQSYSCQCTCIRP*WGVFLR
Trigger: TCTAAGGAAGACTCCCCACAAGGGTCTGATGCAGGT...GCATTGGCAGCTGTAGGACTGGTGCCCCCAACCCTCCCTACCCAGGACTCCTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CAA 90 bp GATGGGGAGCCAGGGACAAGTCCTAGAGTGAGGCTGGGTGCCTTGGAGGGGAGGGGCCTGCTAGAAGTTTaGGAGAGCTTGTTGGCAGAC +
Preference number: 5 (lower is better)
Translates to: DGEPGTSPRVRLGALEGRGLLEV*ESLLAD
Trigger: GTCTGCCAACAAGCTCTCCAAAACTTCTAGCAGGCC...CCTCCCCTCCAAGGCACCCAGCCTCACTCTAGGACTTGTCCCTGGCTCCCCATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CAA 90 bp AAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGAGCCAAGTGGGAGGAGCTACTGCAGACTTCAGCCTaGCGGGACACGTACACATGG +
Preference number: 5 (lower is better)
Translates to: KAWAHKGLQRLGAKWEELLQTSA*RDTYTW
Trigger: CCATGTGTACGTGTCCCGCAAGGCTGAAGTCTGCAG...TAGCTCCTCCCACTTGGCTCCTAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CAA 90 bp AAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGAGCCAAGTGGGAGGAGCTAATGAAGGATGGCAGCTaGCAGAGGCCACTGGAGCCT +
Preference number: 5 (lower is better)
Translates to: KAWAHKGLQRLGAKWEELMKDGS*QRPLEP
Trigger: AGGCTCCAGTGGCCTCTGCAAGCTGCCATCCTTCAT...TAGCTCCTCCCACTTGGCTCCTAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS TCA 90 bp CTGATTCACAAGGGAGTATTTCTTGCGCCACGAAGGGCCATGGTGTaGGGAGAAGCCCCTCCGACTTGGACGGGAGTAGCGGGCGCCAAA +
Preference number: 5 (lower is better)
Translates to: LIHKGVFLAPRRAMV*GEAPPTWTGVAGAK
Trigger: TTTGGCGCCCGCTACTCCCGTCCAAGTCGGAGGGGCTTCTCCTCACACCATGGCCCTTCGTGGCGCAAGAAATACTCCCTTGTGAATCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CCA 90 bp GACCAAGAGGGGGTCGTCCACACTGTAACCCACCTTGGTTCTTCCTaGCCTTGCAGGCTGCAGTTGTCCACCAGGGACCTCAACCTCACT +
Preference number: 5 (lower is better)
Translates to: DQEGVVHTVTHLGSS*PCRLQLSTRDLNLT
Trigger: AGTGAGGTTGAGGTCCCTGGTGGACAACTGCAGCCTGCAAGGCCAGGAAGAACCAAGGTGGGTTACAGTGTGGACGACCCCCTCTTGGTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CCA 90 bp GGCTGGAAGCCTTCCACTTGTACTTGCTGGGAGAGAGGCCAGGCTTaGATGGTGTGGCCAGTTTCTCCGGCCTCACCTCTGGGTCAACTT +
Preference number: 5 (lower is better)
Translates to: GWKPSTCTCWERGQA*MVWPVSPASPLGQL
Trigger: AAGTTGACCCAGAGGTGAGGCCGGAGAAACTGGCCACACCATCCAAGCCTGGCCTCTCTCCCAGCAAGTACAAGTGGAAGGCTTCCAGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CAA 90 bp CAGGCTGGGATGAACCTCACATGGCACCCTGATGGATGGGGAGCCAGGGACAAGACAAGGGAGTATTTCTaGCGCCACGAAGGGCCATGG +
Preference number: 5 (lower is better)
Translates to: QAGMNLTWHPDGWGARDKTREYF*RHEGPW
Trigger: CCATGGCCCTTCGTGGCGCAAGAAATACTCCCTTGT...CTTGTCCCTGGCTCCCCATCCATCAGGGTGCCATGTGAGGTTCATCCCAGCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CAA 90 bp GAACAAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGAGCCAAGTGGGAGGACTCAACCTCACTTCCTaGGGGTCTTTGGCCACTCCA +
Preference number: 5 (lower is better)
Translates to: EQGLGTQRPPEARSQVGGLNLTS*GSLATP
Trigger: TGGAGTGGCCAAAGACCCCAAGGAAGTGAGGTTGAG...TCCTCCCACTTGGCTCCTAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTTGTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CAA 90 bp CAGGCTGGGATGAACCTCACATGGCACCCTGATGGATGGGGAGCCAGGGACAAGCTGGAAGCCTTCCACTaGTACTTGCTGGGAGAGAGG +
Preference number: 5 (lower is better)
Translates to: QAGMNLTWHPDGWGARDKLEAFH*YLLGER
Trigger: CCTCTCTCCCAGCAAGTACAAGTGGAAGGCTTCCAG...CTTGTCCCTGGCTCCCCATCCATCAGGGTGCCATGTGAGGTTCATCCCAGCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CAA 90 bp GAACAAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGAGCCAAGTGGGAGGACGCCTCCGGATAATCTaGGTCCGGCTCTTCACTTTG +
Preference number: 5 (lower is better)
Translates to: EQGLGTQRPPEARSQVGGRLRII*VRLFTL
Trigger: CAAAGTGAAGAGCCGGACCAAGATTATCCGGAGGCG...TCCTCCCACTTGGCTCCTAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTTGTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CAA 90 bp GATGGGGAGCCAGGGACAAGTCCTAGAGTGAGGCTGGGTGCCTTGGAGGGGAGGTTGTTGGCAGACACCTaGTACAGAACCCCTCCAATG +
Preference number: 5 (lower is better)
Translates to: DGEPGTSPRVRLGALEGRLLADT*YRTPPM
Trigger: CATTGGAGGGGTTCTGTACAAGGTGTCTGCCAACAA...CCTCCCCTCCAAGGCACCCAGCCTCACTCTAGGACTTGTCCCTGGCTCCCCATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CCA 90 bp GGGCTATTCTTCCCCCGGAGGGCCTGTCTCCGTCGCTGGGTAAGATaGTTTTTGCTGGTGGTGGCAGTTGTAGGGCTGTTCTTCTTGTCC +
Preference number: 5 (lower is better)
Translates to: GLFFPRRACLRRWVR*FLLVVAVVGLFFLS
Trigger: GGACAAGAAGAACAGCCCTACAACTGCCACCACCAGCAAAAACCATCTTACCCAGCGACGGAGACAGGCCCTCCGGGGGAAGAATAGCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CCA 90 bp CTTAGAACCGGGCTATTCTTCCCCCGGAGGGCCTGTCTCCGTCGCTaGGTAAGATGGTTTTTGCTGGTGGTGGCAGTTGTAGGGCTGTTC +
Preference number: 5 (lower is better)
Translates to: LRTGLFFPRRACLRR*VRWFLLVVAVVGLF
Trigger: GAACAGCCCTACAACTGCCACCACCAGCAAAAACCATCTTACCCAGCGACGGAGACAGGCCCTCCGGGGGAAGAATAGCCCGGTTCTAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CCA 90 bp AAGGGCAGGACCCATCTGTCTTCTTGCATGTGCCTCGGACAAATCTaGTGCACACGGCCACCTTCTCAGGGTCATGGATGTAGGGGCAGC +
Preference number: 5 (lower is better)
Translates to: KGRTHLSSCMCLGQI*CTRPPSQGHGCRGS
Trigger: GCTGCCCCTACATCCATGACCCTGAGAAGGTGGCCGTGTGCACCAGATTTGTCCGAGGCACATGCAAGAAGACAGATGGGTCCTGCCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS GCA 90 bp AAGTGTACCCTGAGGGCCACTTCATTTTCACTGACTGTCCGCCGATaGTCGGGAGAGCTGTCACTCACCCTGCCCACAGACTTCACTACC +
Preference number: 5 (lower is better)
Translates to: KCTLRATSFSLTVRR*SGELSLTLPTDFTT
Trigger: GGTAGTGAAGTCTGTGGGCAGGGTGAGTGACAGCTCTCCCGAGCATCGGCGGACAGTCAGTGAAAATGAAGTGGCCCTCAGGGTACACTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS GCA 90 bp GGCAGGACCCATCTGTCTTCTTGCATGTGCCTCGGACAAATCTGGTaGACACGGCCACCTTCTCAGGGTCATGGATGTAGGGGCAGCATT +
Preference number: 5 (lower is better)
Translates to: GRTHLSSCMCLGQIW*TRPPSQGHGCRGSI
Trigger: AATGCTGCCCCTACATCCATGACCCTGAGAAGGTGGCCGTGTGCACCAGATTTGTCCGAGGCACATGCAAGAAGACAGATGGGTCCTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CAA 90 bp AAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGAGCCAAGTGGGAGGAGCTAGACCCATCTGTCTTCTaGCATGTGCCTCGGACAAAT +
Preference number: 5 (lower is better)
Translates to: KAWAHKGLQRLGAKWEELDPSVF*HVPRTN
Trigger: ATTTGTCCGAGGCACATGCAAGAAGACAGATGGGTC...TAGCTCCTCCCACTTGGCTCCTAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS GCA 90 bp CTGGGTCAGAAGATTCCACAGGCTGATTCACAAGGGAGTATTTCTTaGGCCACGAAGGGCCATGGTGTGAGGAGAAGCCCCTCCGACTTG +
Preference number: 5 (lower is better)
Translates to: LGQKIPQADSQGSIS*ATKGHGVRRSPSDL
Trigger: CAAGTCGGAGGGGCTTCTCCTCACACCATGGCCCTTCGTGGCGCAAGAAATACTCCCTTGTGAATCAGCCTGTGGAATCTTCTGACCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS GCA 90 bp CCTTGGACACATGGTGAGAGAAAGGGCAGGACCCATCTGTCTTCTTaGATGTGCCTCGGACAAATCTGGTGCACACGGCCACCTTCTCAG +
Preference number: 5 (lower is better)
Translates to: PWTHGERKGRTHLSS*MCLGQIWCTRPPSQ
Trigger: CTGAGAAGGTGGCCGTGTGCACCAGATTTGTCCGAGGCACATGCAAGAAGACAGATGGGTCCTGCCCTTTCTCTCACCATGTGTCCAAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS GCA 90 bp AGACTTCAGCCTTGCGGGACACGTACACATGGCTGTAGGGGCAGTTaGTGTTGCTGCAGATCCCCTTCAGAAAGTAGGAGCACACAGGCA +
Preference number: 5 (lower is better)
Translates to: RLQPCGTRTHGCRGS*CCCRSPSESRSTQA
Trigger: TGCCTGTGTGCTCCTACTTTCTGAAGGGGATCTGCAGCAACAGCAACTGCCCCTACAGCCATGTGTACGTGTCCCGCAAGGCTGAAGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CAA 90 bp GAACAAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGAGCCAAGTGGGAGGAGCCAGTGTTTGCTCTTaGGTCTCCAATGAACTGTTC +
Preference number: 5 (lower is better)
Translates to: EQGLGTQRPPEARSQVGGASVCS*VSNELF
Trigger: GAACAGTTCATTGGAGACCAAAGAGCAAACACTGGC...TCCTCCCACTTGGCTCCTAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTTGTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CAA 90 bp CAGGCTGGGATGAACCTCACATGGCACCCTGATGGATGGGGAGCCAGGGACAAGTGGGTAAGATGGTTTTaGCTGGTGGTGGCAGTTGTA +
Preference number: 5 (lower is better)
Translates to: QAGMNLTWHPDGWGARDKWVRWF*LVVAVV
Trigger: TACAACTGCCACCACCAGCAAAAACCATCTTACCCA...CTTGTCCCTGGCTCCCCATCCATCAGGGTGCCATGTGAGGTTCATCCCAGCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CAA 90 bp GAACAAGGCCTGGGCACACAAAGGCCTCCAGAGGCTAGGAGCCAAGTGGGAGGAGTTTTGGAGAGCTTGTaGGCAGACACCTTGTACAGA +
Preference number: 5 (lower is better)
Translates to: EQGLGTQRPPEARSQVGGVLESL*ADTLYR
Trigger: TCTGTACAAGGTGTCTGCCAACAAGCTCTCCAAAAC...TCCTCCCACTTGGCTCCTAGCCTCTGGAGGCCTTTGTGTGCCCAGGCCTTGTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS GCA 90 bp ACACATGGTGAGAGAAAGGGCAGGACCCATCTGTCTTCTTGCATGTaGCTCGGACAAATCTGGTGCACACGGCCACCTTCTCAGGGTCAT +
Preference number: 5 (lower is better)
Translates to: THGERKGRTHLSSCM*LGQIWCTRPPSQGH
Trigger: ATGACCCTGAGAAGGTGGCCGTGTGCACCAGATTTGTCCGAGGCACATGCAAGAAGACAGATGGGTCCTGCCCTTTCTCTCACCATGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS TCA 90 bp TGTTCTGGGACTGAGGGCTCTCCGAGCGACCCGTGGGCTCTTTTCTaGGGCAGCTACCCATTTGTAGTTGTTTTTCCGAAACTTGCTGGT +
Preference number: 5 (lower is better)
Translates to: CSGTEGSPSDPWALF*GSYPFVVVFPKLAG
Trigger: ACCAGCAAGTTTCGGAAAAACAACTACAAATGGGTAGCTGCCTCAGAAAAGAGCCCACGGGTCGCTCGGAGAGCCCTCAGTCCCAGAACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS GCA 90 bp GGCAGCATTCGCCACGGTTACACCTGCCAAAGCGGTTGTAGTACATaGAGTACTCTCTCTTCTTCTCTTTCTTCTGCTTCGCCTGCCGGA +
Preference number: 5 (lower is better)
Translates to: GSIRHGYTCQSGCST*STLSSSLSSASPAG
Trigger: TCCGGCAGGCGAAGCAGAAGAAAGAGAAGAAGAGAGAGTACTGCATGTACTACAACCGCTTTGGCAGGTGTAACCGTGGCGAATGCTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CCA 90 bp CTTCTTAACAATGCGGTAGCGGGTCTTGATCACCTTATTGGAGGGTaGAATCCCCATGTGCACACTGGAAGCTTCCTTGGTGGAGAGGTG +
Preference number: 5 (lower is better)
Translates to: LLNNAVAGLDHLIGG*NPHVHTGSFLGGEV
Trigger: CACCTCTCCACCAAGGAAGCTTCCAGTGTGCACATGGGGATTCCACCCTCCAATAAGGTGATCAAGACCCGCTACCGCATTGTTAAGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS GCA 90 bp TCTCAGGGTCATGGATGTAGGGGCAGCATTCGCCACGGTTACACCTaGCAAAGCGGTTGTAGTACATGCAGTACTCTCTCTTCTTCTCTT +
Preference number: 5 (lower is better)
Translates to: SQGHGCRGSIRHGYT*QSGCSTCSTLSSSL
Trigger: AAGAGAAGAAGAGAGAGTACTGCATGTACTACAACCGCTTTGGCAGGTGTAACCGTGGCGAATGCTGCCCCTACATCCATGACCCTGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CCA 90 bp GCTATCCTCAGACCTGAGGGATGTCTGAAAAGCAGGATCGCTGGCTaGGTCAGAAGATTCCACAGGCTGATTCACAAGGGAGTATTTCTT +
Preference number: 5 (lower is better)
Translates to: AILRPEGCLKSRIAG*VRRFHRLIHKGVFL
Trigger: AAGAAATACTCCCTTGTGAATCAGCCTGTGGAATCTTCTGACCCAGCCAGCGATCCTGCTTTTCAGACATCCCTCAGGTCTGAGGATAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS-3UTR CAA 90 bp GCACCAGTCCTACAGCTGCCAATGCCACCACAGGAGACAGGCTGGGATGAACCTGACTTTGATGGTGGCTaGATCTTAATAACCATATTC +
Preference number: 5 (lower is better)
Translates to: APVLQLPMPPQETGWDEPDFDGG*ILITIF
Trigger: GAATATGGTTATTAAGATCAAGCCACCATCAAAGTC...AGGTTCATCCCAGCCTGTCTCCTGTGGTGGCATTGGCAGCTGTAGGACTGGTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CAA 90 bp TCTTGCGCCACGAAGGGCCATGGTGTGAGGAGAAGCCCCTCCGACTaGGACGGGAGTAGCGGGCGCCAAAGGTCCTGCCACCCGGGAACA +
Preference number: 6 (lower is better)
Translates to: SCATKGHGVRRSPSD*DGSSGRQRSCHPGT
Trigger: TGTTCCCGGGTGGCAGGACCTTTGGCGCCCGCTACTCCCGTCCAAGTCGGAGGGGCTTCTCCTCACACCATGGCCCTTCGTGGCGCAAGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS GCA 72 bp TCTGGGGGCTCCATCACTGGGCCCAGGGATAGGAGGTaGAGCTGTCCGCCGGCCATGTCGCTTCTGGTTACG +
Preference number: 6 (lower is better)
Translates to: SGGSITGPRDRR*SCPPAMSLLVT
Trigger: CGTAACCAGAAGCGACATGGCCGGCGGACAGCTGCACCTCCTATCCCTGGGCCCAGTGATGGAGCCCCCAGA
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CCA 72 bp TTCTGCTTCGCCTGCCGGATGATAGCCAGGCTCCGCTaGATGGCCCGGCTGGCCAAGGAACGACTGCAGGTG +
Preference number: 6 (lower is better)
Translates to: FCFACRMIARLR*MARLAKERLQV
Trigger: CACCTGCAGTCGTTCCTTGGCCAGCCGGGCCATCCAGCGGAGCCTGGCTATCATCCGGCAGGCGAAGCAGAA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CCA 72 bp AGGGTGGAATCCCCATGTGCACACTGGAAGCTTCCTTaGTGGAGAGGTGGGTCCGGCTGGACGGCAGGCAGC +
Preference number: 6 (lower is better)
Translates to: RVESPCAHWKLP*WRGGSGWTAGS
Trigger: GCTGCCTGCCGTCCAGCCGGACCCACCTCTCCACCAAGGAAGCTTCCAGTGTGCACATGGGGATTCCACCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CCA 72 bp ATAGGAGGTGCAGCTGTCCGCCGGCCATGTCGCTTCTaGTTACGATGGAGCAGCTGGCACTGGGAGCCACGG +
Preference number: 6 (lower is better)
Translates to: IGGAAVRRPCRF*LRWSSWHWEPR
Trigger: CCGTGGCTCCCAGTGCCAGCTGCTCCATCGTAACCAGAAGCGACATGGCCGGCGGACAGCTGCACCTCCTAT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CAA 72 bp GTCCGGCTGGACGGCAGGCAGCAGAGCCGGTGCCTGTaGACCTGCATCAGACCCTTGTGGGGAGTCTTCCTT +
Preference number: 6 (lower is better)
Translates to: VRLDGRQQSRCL*TCIRPLWGVFL
Trigger: AAGGAAGACTCCCCACAAGGGTCTGATGCAGGTCAACAGGCACCGGCTCTGCTGCCTGCCGTCCAGCCGGAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CAA 90 bp GGAGAGCTGTCACTCACCCTGCCCACAGACTTCACTACCCGAGGCTaGCCAGGCTCCTTCTGGCAGACCAAGAGGGGGTCGTCCACACTG +
Preference number: 6 (lower is better)
Translates to: GELSLTLPTDFTTRG*PGSFWQTKRGSSTL
Trigger: CAGTGTGGACGACCCCCTCTTGGTCTGCCAGAAGGAGCCTGGCAAGCCTCGGGTAGTGAAGTCTGTGGGCAGGGTGAGTGACAGCTCTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS TCA 72 bp TCCGGCTGGACGGCAGGCAGCAGAGCCGGTGCCTGTTaGCCTGCATCAGACCCTTGTGGGGAGTCTTCCTTA +
Preference number: 6 (lower is better)
Translates to: SGWTAGSRAGAC*PASDPCGESSL
Trigger: TAAGGAAGACTCCCCACAAGGGTCTGATGCAGGTCAACAGGCACCGGCTCTGCTGCCTGCCGTCCAGCCGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CCA 72 bp GTGGAATCCCCATGTGCACACTGGAAGCTTCCTTGGTaGAGAGGTGGGTCCGGCTGGACGGCAGGCAGCAGA +
Preference number: 6 (lower is better)
Translates to: VESPCAHWKLPW*RGGSGWTAGSR
Trigger: TCTGCTGCCTGCCGTCCAGCCGGACCCACCTCTCCACCAAGGAAGCTTCCAGTGTGCACATGGGGATTCCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CCA 72 bp GCAGCTGTCCGCCGGCCATGTCGCTTCTGGTTACGATaGAGCAGCTGGCACTGGGAGCCACGGGGACAAATA +
Preference number: 6 (lower is better)
Translates to: AAVRRPCRFWLR*SSWHWEPRGQI
Trigger: TATTTGTCCCCGTGGCTCCCAGTGCCAGCTGCTCCATCGTAACCAGAAGCGACATGGCCGGCGGACAGCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CAA 72 bp TCACTCACCCTGCCCACAGACTTCACTACCCGAGGCTaGCCAGGCTCCTTCTGGCAGACCAAGAGGGGGTCG +
Preference number: 6 (lower is better)
Translates to: SLTLPTDFTTRG*PGSFWQTKRGS
Trigger: CGACCCCCTCTTGGTCTGCCAGAAGGAGCCTGGCAAGCCTCGGGTAGTGAAGTCTGTGGGCAGGGTGAGTGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CAA 72 bp GCAGGGTCCAGGCGTCCTGTGCGGAGGAGGGTCCTGTaGCCATCACTGGGCCTGCTAGAAGTTTTGGAGAGC +
Preference number: 6 (lower is better)
Translates to: AGSRRPVRRRVL*PSLGLLEVLES
Trigger: GCTCTCCAAAACTTCTAGCAGGCCCAGTGATGGCAACAGGACCCTCCTCCGCACAGGACGCCTGGACCCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS GCA 72 bp CTGGACGGCAGGCAGCAGAGCCGGTGCCTGTTGACCTaGATCAGACCCTTGTGGGGAGTCTTCCTTAGAACC +
Preference number: 6 (lower is better)
Translates to: LDGRQQSRCLLT*IRPLWGVFLRT
Trigger: GGTTCTAAGGAAGACTCCCCACAAGGGTCTGATGCAGGTCAACAGGCACCGGCTCTGCTGCCTGCCGTCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CCA 72 bp GGGGTCGTCCACACTGTAACCCACCTTGGTTCTTCCTaGCCTTGCAGGCTGCAGTTGTCCACCAGGGACCTC +
Preference number: 6 (lower is better)
Translates to: GVVHTVTHLGSS*PCRLQLSTRDL
Trigger: GAGGTCCCTGGTGGACAACTGCAGCCTGCAAGGCCAGGAAGAACCAAGGTGGGTTACAGTGTGGACGACCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CCA 72 bp CCATGTCGCTTCTGGTTACGATGGAGCAGCTGGCACTaGGAGCCACGGGGACAAATACCCCTGCGGGCAAAG +
Preference number: 6 (lower is better)
Translates to: PCRFWLRWSSWH*EPRGQIPLRAK
Trigger: CTTTGCCCGCAGGGGTATTTGTCCCCGTGGCTCCCAGTGCCAGCTGCTCCATCGTAACCAGAAGCGACATGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CAA 72 bp GTAGTAGGCTTCCTGAGTACGTGGCCAGCTGAGGCCTaGCTTCTGGGGGCTCCATCACTGGGCCCAGGGATA +
Preference number: 6 (lower is better)
Translates to: VVGFLSTWPAEA*LLGAPSLGPGI
Trigger: TATCCCTGGGCCCAGTGATGGAGCCCCCAGAAGCAAGGCCTCAGCTGGCCACGTACTCAGGAAGCCTACTAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CAA 90 bp GGGCTGGAAGCCTTCCACTTGTACTTGCTGGGAGAGAGGCCAGGCTaGGATGGTGTGGCCAGTTTCTCCGGCCTCACCTCTGGGTCAACT +
Preference number: 6 (lower is better)
Translates to: GLEAFHLYLLGERPG*DGVASFSGLTSGST
Trigger: AGTTGACCCAGAGGTGAGGCCGGAGAAACTGGCCACACCATCCAAGCCTGGCCTCTCTCCCAGCAAGTACAAGTGGAAGGCTTCCAGCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CAA 90 bp CAGGTGGTAGCAGGGTCCAGGCGTCCTGTGCGGAGGAGGGTCCTGTaGCCATCACTGGGCCTGCTAGAAGTTTTGGAGAGCTTGTTGGCA +
Preference number: 6 (lower is better)
Translates to: QVVAGSRRPVRRRVL*PSLGLLEVLESLLA
Trigger: TGCCAACAAGCTCTCCAAAACTTCTAGCAGGCCCAGTGATGGCAACAGGACCCTCCTCCGCACAGGACGCCTGGACCCTGCTACCACCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS TCA 72 bp AAGGGAGTATTTCTTGCGCCACGAAGGGCCATGGTGTaGGGAGAAGCCCCTCCGACTTGGACGGGAGTAGCG +
Preference number: 6 (lower is better)
Translates to: KGVFLAPRRAMV*GEAPPTWTGVA
Trigger: CGCTACTCCCGTCCAAGTCGGAGGGGCTTCTCCTCACACCATGGCCCTTCGTGGCGCAAGAAATACTCCCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS TCA 72 bp GGATGGCAGCTTGCAGAGGCCACTGGAGCCTGTTCCTaGGCCTGTCCCAGAGACAGCTTCTTCCTGCTCCAA +
Preference number: 6 (lower is better)
Translates to: GWQLAEATGACS*ACPRDSFFLLQ
Trigger: TTGGAGCAGGAAGAAGCTGTCTCTGGGACAGGCTCAGGAACAGGCTCCAGTGGCCTCTGCAAGCTGCCATCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS GCA 72 bp CTGAGGGCCACTTCATTTTCACTGACTGTCCGCCGATaGTCGGGAGAGCTGTCACTCACCCTGCCCACAGAC +
Preference number: 6 (lower is better)
Translates to: LRATSFSLTVRR*SGELSLTLPTD
Trigger: GTCTGTGGGCAGGGTGAGTGACAGCTCTCCCGAGCATCGGCGGACAGTCAGTGAAAATGAAGTGGCCCTCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CCA 72 bp TTCCCCCGGAGGGCCTGTCTCCGTCGCTGGGTAAGATaGTTTTTGCTGGTGGTGGCAGTTGTAGGGCTGTTC +
Preference number: 6 (lower is better)
Translates to: FPRRACLRRWVR*FLLVVAVVGLF
Trigger: GAACAGCCCTACAACTGCCACCACCAGCAAAAACCATCTTACCCAGCGACGGAGACAGGCCCTCCGGGGGAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CAA 90 bp CACACTGTAACCCACCTTGGTTCTTCCTGGCCTTGCAGGCTGCAGTaGTCCACCAGGGACCTCAACCTCACTTCCTTGGGGTCTTTGGCC +
Preference number: 6 (lower is better)
Translates to: HTVTHLGSSWPCRLQ*STRDLNLTSLGSLA
Trigger: GGCCAAAGACCCCAAGGAAGTGAGGTTGAGGTCCCTGGTGGACAACTGCAGCCTGCAAGGCCAGGAAGAACCAAGGTGGGTTACAGTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS GCA 72 bp GTCCACACTGTAACCCACCTTGGTTCTTCCTGGCCTTaGAGGCTGCAGTTGTCCACCAGGGACCTCAACCTC +
Preference number: 6 (lower is better)
Translates to: VHTVTHLGSSWP*RLQLSTRDLNL
Trigger: GAGGTTGAGGTCCCTGGTGGACAACTGCAGCCTGCAAGGCCAGGAAGAACCAAGGTGGGTTACAGTGTGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CCA 72 bp TTCACAAGGGAGTATTTCTTGCGCCACGAAGGGCCATaGTGTGAGGAGAAGCCCCTCCGACTTGGACGGGAG +
Preference number: 6 (lower is better)
Translates to: FTREYFLRHEGP*CEEKPLRLGRE
Trigger: CTCCCGTCCAAGTCGGAGGGGCTTCTCCTCACACCATGGCCCTTCGTGGCGCAAGAAATACTCCCTTGTGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CCA 72 bp CCACCAGGGACCTCAACCTCACTTCCTTGGGGTCTTTaGCCACTCCAAGAGGGGTCATCACAGCCTTCCAAG +
Preference number: 6 (lower is better)
Translates to: PPGTSTSLPWGL*PLQEGSSQPSK
Trigger: CTTGGAAGGCTGTGATGACCCCTCTTGGAGTGGCCAAAGACCCCAAGGAAGTGAGGTTGAGGTCCCTGGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CCA 72 bp AGACCAAGAGGGGGTCGTCCACACTGTAACCCACCTTaGTTCTTCCTGGCCTTGCAGGCTGCAGTTGTCCAC +
Preference number: 6 (lower is better)
Translates to: RPRGGRPHCNPP*FFLALQAAVVH
Trigger: GTGGACAACTGCAGCCTGCAAGGCCAGGAAGAACCAAGGTGGGTTACAGTGTGGACGACCCCCTCTTGGTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CCA 72 bp CTGACTGAAGCCACCACTGGCCCCAAGGAAGCTGGCTaGTCTGAGTGGCCAGTGTTTGCTCTTTGGTCTCCA +
Preference number: 6 (lower is better)
Translates to: LTEATTGPKEAG*SEWPVFALWSP
Trigger: TGGAGACCAAAGAGCAAACACTGGCCACTCAGACCAGCCAGCTTCCTTGGGGCCAGTGGTGGCTTCAGTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CCA 72 bp GCCAACGGAAAGAGGAAGAGGAGGAAGCAGACGGGCTaGAAGCCTTCCACTTGTACTTGCTGGGAGAGAGGC +
Preference number: 6 (lower is better)
Translates to: ANGKRKRRKQTG*KPSTCTCWERG
Trigger: GCCTCTCTCCCAGCAAGTACAAGTGGAAGGCTTCCAGCCCGTCTGCTTCCTCCTCTTCCTCTTTCCGTTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CCA 72 bp GGGCTATTCTTCCCCCGGAGGGCCTGTCTCCGTCGCTaGGTAAGATGGTTTTTGCTGGTGGTGGCAGTTGTA +
Preference number: 6 (lower is better)
Translates to: GLFFPRRACLRR*VRWFLLVVAVV
Trigger: TACAACTGCCACCACCAGCAAAAACCATCTTACCCAGCGACGGAGACAGGCCCTCCGGGGGAAGAATAGCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CCA 72 bp CAGAGCCGGTGCCTGTTGACCTGCATCAGACCCTTGTaGGGAGTCTTCCTTAGAACCGGGCTATTCTTCCCC +
Preference number: 6 (lower is better)
Translates to: QSRCLLTCIRPL*GVFLRTGLFFP
Trigger: GGGGAAGAATAGCCCGGTTCTAAGGAAGACTCCCCACAAGGGTCTGATGCAGGTCAACAGGCACCGGCTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CCA 72 bp TCACCTTATTGGAGGGTGGAATCCCCATGTGCACACTaGAAGCTTCCTTGGTGGAGAGGTGGGTCCGGCTGG +
Preference number: 6 (lower is better)
Translates to: SPYWRVESPCAH*KLPWWRGGSGW
Trigger: CCAGCCGGACCCACCTCTCCACCAAGGAAGCTTCCAGTGTGCACATGGGGATTCCACCCTCCAATAAGGTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CAA 72 bp CGTCCACACTGTAACCCACCTTGGTTCTTCCTGGCCTaGCAGGCTGCAGTTGTCCACCAGGGACCTCAACCT +
Preference number: 6 (lower is better)
Translates to: RPHCNPPWFFLA*QAAVVHQGPQP
Trigger: AGGTTGAGGTCCCTGGTGGACAACTGCAGCCTGCAAGGCCAGGAAGAACCAAGGTGGGTTACAGTGTGGACG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS GCA 72 bp ATGGGACTGGGGAGAGCTGAGAAGTATGGTCCTTGCTaGCAGCCTCAGACTGCCAACGGAAAGAGGAAGAGG +
Preference number: 6 (lower is better)
Translates to: MGLGRAEKYGPC*QPQTANGKRKR
Trigger: CCTCTTCCTCTTTCCGTTGGCAGTCTGAGGCTGGCAGCAAGGACCATACTTCTCAGCTCTCCCCAGTCCCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS GCA 72 bp GCTTGTTGGCAGACACCTTGTACAGAACCCCTCCAATaGAGCGGTAGCCTTTGTTGCGCCATCGAGGGGTAC +
Preference number: 6 (lower is better)
Translates to: ACWQTPCTEPLQ*SGSLCCAIEGY
Trigger: GTACCCCTCGATGGCGCAACAAAGGCTACCGCTGCATTGGAGGGGTTCTGTACAAGGTGTCTGCCAACAAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS GCA 72 bp CCTTGCGGGACACGTACACATGGCTGTAGGGGCAGTTaGTGTTGCTGCAGATCCCCTTCAGAAAGTAGGAGC +
Preference number: 6 (lower is better)
Translates to: PCGTRTHGCRGS*CCCRSPSESRS
Trigger: GCTCCTACTTTCTGAAGGGGATCTGCAGCAACAGCAACTGCCCCTACAGCCATGTGTACGTGTCCCGCAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CCA 72 bp GGACTGAGCTGGACCTGTCTCTCCAGTACATACTGCTaGGGTTCAGGATGCTGGCTATCCTCAGACCTGAGG +
Preference number: 6 (lower is better)
Translates to: GLSWTCLSSTYC*GSGCWLSSDLR
Trigger: CCTCAGGTCTGAGGATAGCCAGCATCCTGAACCCCAGCAGTATGTACTGGAGAGACAGGTCCAGCTCAGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CCA 72 bp TGCAGTTGTCCACCAGGGACCTCAACCTCACTTCCTTaGGGTCTTTGGCCACTCCAAGAGGGGTCATCACAG +
Preference number: 6 (lower is better)
Translates to: CSCPPGTSTSLP*GLWPLQEGSSQ
Trigger: CTGTGATGACCCCTCTTGGAGTGGCCAAAGACCCCAAGGAAGTGAGGTTGAGGTCCCTGGTGGACAACTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CCA 72 bp GCCACCACTGGCCCCAAGGAAGCTGGCTGGTCTGAGTaGCCAGTGTTTGCTCTTTGGTCTCCAATGAACTGT +
Preference number: 6 (lower is better)
Translates to: ATTGPKEAGWSE*PVFALWSPMNC
Trigger: ACAGTTCATTGGAGACCAAAGAGCAAACACTGGCCACTCAGACCAGCCAGCTTCCTTGGGGCCAGTGGTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CAA 72 bp CTGCAGTTGTCCACCAGGGACCTCAACCTCACTTCCTaGGGGTCTTTGGCCACTCCAAGAGGGGTCATCACA +
Preference number: 6 (lower is better)
Translates to: LQLSTRDLNLTS*GSLATPRGVIT
Trigger: TGTGATGACCCCTCTTGGAGTGGCCAAAGACCCCAAGGAAGTGAGGTTGAGGTCCCTGGTGGACAACTGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CAA 72 bp GTAGGGCTGTTCTTCTTGTCCCCAGGAATGCTGGTATaGCCCCGCCTCCGGATAATCTTGGTCCGGCTCTTC +
Preference number: 6 (lower is better)
Translates to: VGLFFLSPGMLV*PRLRIILVRLF
Trigger: GAAGAGCCGGACCAAGATTATCCGGAGGCGGGGCAATACCAGCATTCCTGGGGACAAGAAGAACAGCCCTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CAA 72 bp CGGAGGGCCTGTCTCCGTCGCTGGGTAAGATGGTTTTaGCTGGTGGTGGCAGTTGTAGGGCTGTTCTTCTTG +
Preference number: 6 (lower is better)
Translates to: RRACLRRWVRWF*LVVAVVGLFFL
Trigger: CAAGAAGAACAGCCCTACAACTGCCACCACCAGCAAAAACCATCTTACCCAGCGACGGAGACAGGCCCTCCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CAA 72 bp CAGCAGAGCCGGTGCCTGTTGACCTGCATCAGACCCTaGTGGGGAGTCTTCCTTAGAACCGGGCTATTCTTC +
Preference number: 6 (lower is better)
Translates to: QQSRCLLTCIRP*WGVFLRTGLFF
Trigger: GAAGAATAGCCCGGTTCTAAGGAAGACTCCCCACAAGGGTCTGATGCAGGTCAACAGGCACCGGCTCTGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CAA 90 bp GTGCGGAGGAGGGTCCTGTTGCCATCACTGGGCCTGCTAGAAGTTTaGGAGAGCTTGTTGGCAGACACCTTGTACAGAACCCCTCCAATG +
Preference number: 6 (lower is better)
Translates to: VRRRVLLPSLGLLEV*ESLLADTLYRTPPM
Trigger: CATTGGAGGGGTTCTGTACAAGGTGTCTGCCAACAAGCTCTCCAAAACTTCTAGCAGGCCCAGTGATGGCAACAGGACCCTCCTCCGCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS GCA 72 bp TCTGGACTGAGCTGGACCTGTCTCTCCAGTACATACTaGTGGGGTTCAGGATGCTGGCTATCCTCAGACCTG +
Preference number: 6 (lower is better)
Translates to: SGLSWTCLSSTY*WGSGCWLSSDL
Trigger: CAGGTCTGAGGATAGCCAGCATCCTGAACCCCAGCAGTATGTACTGGAGAGACAGGTCCAGCTCAGTCCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS GCA 72 bp GAGAGAAAGGGCAGGACCCATCTGTCTTCTTGCATGTaGCTCGGACAAATCTGGTGCACACGGCCACCTTCT +
Preference number: 6 (lower is better)
Translates to: ERKGRTHLSSCM*LGQIWCTRPPS
Trigger: AGAAGGTGGCCGTGTGCACCAGATTTGTCCGAGGCACATGCAAGAAGACAGATGGGTCCTGCCCTTTCTCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS GCA 72 bp CATGGTGAGAGAAAGGGCAGGACCCATCTGTCTTCTTaGATGTGCCTCGGACAAATCTGGTGCACACGGCCA +
Preference number: 6 (lower is better)
Translates to: HGERKGRTHLSS*MCLGQIWCTRP
Trigger: TGGCCGTGTGCACCAGATTTGTCCGAGGCACATGCAAGAAGACAGATGGGTCCTGCCCTTTCTCTCACCATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS TCA 72 bp TCAGGATGCTGGCTATCCTCAGACCTGAGGGATGTCTaGAAAGCAGGATCGCTGGCTGGGTCAGAAGATTCC +
Preference number: 6 (lower is better)
Translates to: SGCWLSSDLRDV*KAGSLAGSEDS
Trigger: GGAATCTTCTGACCCAGCCAGCGATCCTGCTTTTCAGACATCCCTCAGGTCTGAGGATAGCCAGCATCCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS GCA 72 bp AAGATTCCACAGGCTGATTCACAAGGGAGTATTTCTTaGGCCACGAAGGGCCATGGTGTGAGGAGAAGCCCC +
Preference number: 6 (lower is better)
Translates to: KIPQADSQGSIS*ATKGHGVRRSP
Trigger: GGGGCTTCTCCTCACACCATGGCCCTTCGTGGCGCAAGAAATACTCCCTTGTGAATCAGCCTGTGGAATCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS GCA 72 bp CATCTGTCTTCTTGCATGTGCCTCGGACAAATCTGGTaGACACGGCCACCTTCTCAGGGTCATGGATGTAGG +
Preference number: 6 (lower is better)
Translates to: HLSSCMCLGQIW*TRPPSQGHGCR
Trigger: CCTACATCCATGACCCTGAGAAGGTGGCCGTGTGCACCAGATTTGTCCGAGGCACATGCAAGAAGACAGATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS GCA 72 bp ACACGTACACATGGCTGTAGGGGCAGTTGCTGTTGCTaGAGATCCCCTTCAGAAAGTAGGAGCACACAGGCA +
Preference number: 6 (lower is better)
Translates to: TRTHGCRGSCCC*RSPSESRSTQA
Trigger: TGCCTGTGTGCTCCTACTTTCTGAAGGGGATCTGCAGCAACAGCAACTGCCCCTACAGCCATGTGTACGTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CCA 72 bp GCTGTGGCTTCTCTGTCTTTCCAACTGTACCCAAAGTaGCCTTGTTCCCGCTCTCCAGAGTTGTTCTGGGAC +
Preference number: 6 (lower is better)
Translates to: AVASLSFQLYPK*PCSRSPELFWD
Trigger: GTCCCAGAACAACTCTGGAGAGCGGGAACAAGGCCACTTTGGGTACAGTTGGAAAGACAGAGAAGCCACAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CAA 72 bp GGCTTCTCTGTCTTTCCAACTGTACCCAAAGTGGCCTaGTTCCCGCTCTCCAGAGTTGTTCTGGGACTGAGG +
Preference number: 6 (lower is better)
Translates to: GFSVFPTVPKVA*FPLSRVVLGLR
Trigger: CCTCAGTCCCAGAACAACTCTGGAGAGCGGGAACAAGGCCACTTTGGGTACAGTTGGAAAGACAGAGAAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS TCA 72 bp ACTGAGGGCTCTCCGAGCGACCCGTGGGCTCTTTTCTaGGGCAGCTACCCATTTGTAGTTGTTTTTCCGAAA +
Preference number: 6 (lower is better)
Translates to: TEGSPSDPWALF*GSYPFVVVFPK
Trigger: TTTCGGAAAAACAACTACAAATGGGTAGCTGCCTCAGAAAAGAGCCCACGGGTCGCTCGGAGAGCCCTCAGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS TCA 72 bp TCTTCTTGCACTTTGCACCCAATGGGCAGTAGCCTTTaGGGAAGTCACTGCAGACTTCAGCCTTGCGGGACA +
Preference number: 6 (lower is better)
Translates to: SSCTLHPMGSSL*GSHCRLQPCGT
Trigger: TGTCCCGCAAGGCTGAAGTCTGCAGTGACTTCCTCAAAGGCTACTGCCCATTGGGTGCAAAGTGCAAGAAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS GCA 72 bp AGGCAGCTACCCATTTGTAGTTGTTTTTCCGAAACTTaGTGGTTCGACAGGACACGAGCAGTGAGGCCTCCC +
Preference number: 6 (lower is better)
Translates to: RQLPICSCFSET*WFDRTRAVRPP
Trigger: GGGAGGCCTCACTGCTCGTGTCCTGTCGAACCAGCAAGTTTCGGAAAAACAACTACAAATGGGTAGCTGCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS GCA 72 bp CATGGATGTAGGGGCAGCATTCGCCACGGTTACACCTaGCAAAGCGGTTGTAGTACATGCAGTACTCTCTCT +
Preference number: 6 (lower is better)
Translates to: HGCRGSIRHGYT*QSGCSTCSTLS
Trigger: AGAGAGAGTACTGCATGTACTACAACCGCTTTGGCAGGTGTAACCGTGGCGAATGCTGCCCCTACATCCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CCA 72 bp AGACCTGAGGGATGTCTGAAAAGCAGGATCGCTGGCTaGGTCAGAAGATTCCACAGGCTGATTCACAAGGGA +
Preference number: 6 (lower is better)
Translates to: RPEGCLKSRIAG*VRRFHRLIHKG
Trigger: TCCCTTGTGAATCAGCCTGTGGAATCTTCTGACCCAGCCAGCGATCCTGCTTTTCAGACATCCCTCAGGTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CCA 72 bp TTTCTCCGGCCTCACCTCTGGGTCAACTTTAGGCTGTaGCTTCTCTGTCTTTCCAACTGTACCCAAAGTGGC +
Preference number: 6 (lower is better)
Translates to: FLRPHLWVNFRL*LLCLSNCTQSG
Trigger: GCCACTTTGGGTACAGTTGGAAAGACAGAGAAGCCACAGCCTAAAGTTGACCCAGAGGTGAGGCCGGAGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CCA 72 bp AATGCGGTAGCGGGTCTTGATCACCTTATTGGAGGGTaGAATCCCCATGTGCACACTGGAAGCTTCCTTGGT +
Preference number: 6 (lower is better)
Translates to: NAVAGLDHLIGG*NPHVHTGSFLG
Trigger: ACCAAGGAAGCTTCCAGTGTGCACATGGGGATTCCACCCTCCAATAAGGTGATCAAGACCCGCTACCGCATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CAA 72 bp CCATCACTGGGCCTGCTAGAAGTTTTGGAGAGCTTGTaGGCAGACACCTTGTACAGAACCCCTCCAATGCAG +
Preference number: 6 (lower is better)
Translates to: PSLGLLEVLESL*ADTLYRTPPMQ
Trigger: CTGCATTGGAGGGGTTCTGTACAAGGTGTCTGCCAACAAGCTCTCCAAAACTTCTAGCAGGCCCAGTGATGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CAA 72 bp AGGGTCCTGTTGCCATCACTGGGCCTGCTAGAAGTTTaGGAGAGCTTGTTGGCAGACACCTTGTACAGAACC +
Preference number: 6 (lower is better)
Translates to: RVLLPSLGLLEV*ESLLADTLYRT
Trigger: GGTTCTGTACAAGGTGTCTGCCAACAAGCTCTCCAAAACTTCTAGCAGGCCCAGTGATGGCAACAGGACCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS CAA 90 bp GGGTCATCACAGCCTTCCAAGGACCCCCGCTGGACCCCTGAAGCATaGATGGCACCTGACTTTGATGGTGGCTTGATCTTAATAACCATA +
Preference number: 6 (lower is better)
Translates to: GSSQPSKDPRWTPEA*MAPDFDGGLILITI
Trigger: TATGGTTATTAAGATCAAGCCACCATCAAAGTCAGGTGCCATCAATGCTTCAGGGGTCCAGCGGGGGTCCTTGGAAGGCTGTGATGACCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4
CDS GCA 72 bp CGCCACGGTTACACCTGCCAAAGCGGTTGTAGTACATaGAGTACTCTCTCTTCTTCTCTTTCTTCTGCTTCG +
Preference number: 6 (lower is better)
Translates to: RHGYTCQSGCST*STLSSSLSSAS
Trigger: CGAAGCAGAAGAAAGAGAAGAAGAGAGAGTACTGCATGTACTACAACCGCTTTGGCAGGTGTAACCGTGGCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100538.4