RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZC3H14 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021012

Ensembl transcript IDs: ENSMUST00000021399.9, ENSMUST00000057000.17, ENSMUST00000110104.10, ENSMUST00000110105.10, ENSMUST00000220660.2, ENSMUST00000221532.2, ENSMUST00000223083.2, ENSMUST00000223451.2

Found 266 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TCACTCACTGCTCTGAGGTCGAATCCATTTCAAGGCGTGTCTTGGTaGCACAGTAATGGTGGGGTGATAAAATGTGCAGTCAGGTCTCGT +
Preference number: 1 (lower is better)
Translates to: SLTALRSNPFQGVSW*HSNGGVIKCAVRSR
Trigger: ACGAGACCTGACTGCACATTTTATCACCCCACCATTACTGTGCCACCAAGACACGCCTTGAAATGGATTCGACCTCAGAGCAGTGAGTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220660.2
3UTR CCA 90 bp GCATCACTCACTGCTCTGAGGTCGAATCCATTTCAAGGCGTGTCTTaGTGGCACAGTAATGGTGGGGTGATAAAATGTGCAGTCAGGTCT +
Preference number: 1 (lower is better)
Translates to: ASLTALRSNPFQGVS*WHSNGGVIKCAVRS
Trigger: AGACCTGACTGCACATTTTATCACCCCACCATTACTGTGCCACCAAGACACGCCTTGAAATGGATTCGACCTCAGAGCAGTGAGTGATGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220660.2
3UTR GCA 90 bp ATTCCAAAGAACTGTCCATATATTTTTACATCGTCATTCCAACTATaGTTACCCTTTATGACCATGTCTCTGCTCACTTTCAGAAAGGCA +
Preference number: 1 (lower is better)
Translates to: IPKNCPYIFTSSFQL*LPFMTMSLLTFRKA
Trigger: TGCCTTTCTGAAAGTGAGCAGAGACATGGTCATAAAGGGTAAGCATAGTTGGAATGACGATGTAAAAATATATGGACAGTTCTTTGGAAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
3UTR-3UTR TCA 90 bp GCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACACTGCATAAAGTGCTTCAGCTCTaGGGACACTGGCCTTCCCAC +
Preference number: 2 (lower is better)
Translates to: ASVSKPGHCYHAGLQTLHKVLQL*GHWPSH
Trigger: GTGGGAAGGCCAGTGTCCTCAGAGCTGAAGCACTTT...ATGCAGTGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
3UTR-3UTR CCA 90 bp GCTCTGAGGACACTGGCCTTCCCACAGCACTACAGCCCTAAGCTGCAAGTACCATCTCTCATCAGAAGATaGAAGCTTTCAAACTGCATG +
Preference number: 2 (lower is better)
Translates to: ALRTLAFPQHYSPKLQVPSLIRR*KLSNCM
Trigger: CATGCAGTTTGAAAGCTTCCATCTTCTGATGAGAGA...TGGTACTTGCAGCTTAGGGCTGTAGTGCTGTGGGAAGGCCAGTGTCCTCAGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
3UTR-3UTR TCA 90 bp CTCACTGCTCTGAGGTCGAATCCATTTCAAGGCGTGTCTTGGTGGCACAGTAATTCAGGTCTCGTACACTaGGTGTTAAACCTACAGTGC +
Preference number: 2 (lower is better)
Translates to: LTALRSNPFQGVSWWHSNSGLVH*VLNLQC
Trigger: GCACTGTAGGTTTAACACTCAGTGTACGAGACCTGA...ATTACTGTGCCACCAAGACACGCCTTGAAATGGATTCGACCTCAGAGCAGTGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220660.2
3UTR-3UTR CCA 90 bp GCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACACTGCATTCTCTCATCAGAAGATaGAAGCTTTCAAACTGCATG +
Preference number: 2 (lower is better)
Translates to: ASVSKPGHCYHAGLQTLHSLIRR*KLSNCM
Trigger: CATGCAGTTTGAAAGCTTCCATCTTCTGATGAGAGA...ATGCAGTGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
3UTR-3UTR CCA 90 bp AAAGCTGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACATCTCTCATCAGAAGATaGAAGCTTTCAAACTGCATG +
Preference number: 2 (lower is better)
Translates to: KAASVSKPGHCYHAGLQTSLIRR*KLSNCM
Trigger: CATGCAGTTTGAAAGCTTCCATCTTCTGATGAGAGA...TGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCAGCTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
3UTR-3UTR CCA 90 bp AGGTCGAATCCATTTCAAGGCGTGTCTTGGTGGCACAGTAATGGTGGGGTGATATCTCTCATCAGAAGATaGAAGCTTTCAAACTGCATG +
Preference number: 2 (lower is better)
Translates to: RSNPFQGVSWWHSNGGVISLIRR*KLSNCM
Trigger: CATGCAGTTTGAAAGCTTCCATCTTCTGATGAGAGA...TATCACCCCACCATTACTGTGCCACCAAGACACGCCTTGAAATGGATTCGACCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220660.2
3UTR-3UTR TCA 90 bp TATTTTTACATCGTCATTCCAACTATGCTTACCCTTTATGACCATGTCTCTGCTAAAGTGCTTCAGCTCTaGGGACACTGGCCTTCCCAC +
Preference number: 2 (lower is better)
Translates to: YFYIVIPTMLTLYDHVSAKVLQL*GHWPSH
Trigger: GTGGGAAGGCCAGTGTCCTCAGAGCTGAAGCACTTT...AGCAGAGACATGGTCATAAAGGGTAAGCATAGTTGGAATGACGATGTAAAAATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
3UTR-3UTR GCA 90 bp GACCTCGGTCCACTCTACCAAAGTAGCACTCAAAATAAAGTCTGCATTATGCTTCTGGGTTACAGACACTaGATTACCTTTGGGAAAAGC +
Preference number: 2 (lower is better)
Translates to: DLGPLYQSSTQNKVCIMLLGYRH*ITFGKS
Trigger: GCTTTTCCCAAAGGTAATGCAGTGTCTGTAACCCAG...AAGCATAATGCAGACTTTATTTTGAGTGCTACTTTGGTAGAGTGGACCGAGGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
3UTR-3UTR GCA 90 bp ACAAACATTTCTCAGCAAATTTACAGTTGGGAAAGGCTTTGCAAGGTGAAATGGAGGCAGGCCAGTACTTaGAGCGCTCCAGAAGTTTTT +
Preference number: 2 (lower is better)
Translates to: TNISQQIYSWERLCKVKWRQAST*SAPEVF
Trigger: AAAAACTTCTGGAGCGCTGCAAGTACTGGCCTGCCT...CCATTTCACCTTGCAAAGCCTTTCCCAACTGTAAATTTGCTGAGAAATGTTTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223451.2
3UTR-3UTR CCA 90 bp TATTTTTACATCGTCATTCCAACTATGCTTACCCTTTATGACCATGTCTCTGCTCCACTGTTACCACGCTaGGTTACAGACACTGCATTA +
Preference number: 2 (lower is better)
Translates to: YFYIVIPTMLTLYDHVSAPLLPR*VTDTAL
Trigger: TAATGCAGTGTCTGTAACCCAGCGTGGTAACAGTGG...AGCAGAGACATGGTCATAAAGGGTAAGCATAGTTGGAATGACGATGTAAAAATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
3UTR-3UTR GCA 90 bp TATTTTTACATCGTCATTCCAACTATGCTTACCCTTTATGACCATGTCTCTGCTCTGGGTTACAGACACTaGATTACCTTTGGGAAAAGC +
Preference number: 2 (lower is better)
Translates to: YFYIVIPTMLTLYDHVSALGYRH*ITFGKS
Trigger: GCTTTTCCCAAAGGTAATGCAGTGTCTGTAACCCAG...AGCAGAGACATGGTCATAAAGGGTAAGCATAGTTGGAATGACGATGTAAAAATA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
3UTR-3UTR GCA 90 bp TGGGAGCATTCCAAAGAACTGTCCATATATTTTTACATCGTCATTCCAACTATGCTGGGTTACAGACACTaGATTACCTTTGGGAAAAGC +
Preference number: 2 (lower is better)
Translates to: WEHSKELSIYFYIVIPTMLGYRH*ITFGKS
Trigger: GCTTTTCCCAAAGGTAATGCAGTGTCTGTAACCCAG...CATAGTTGGAATGACGATGTAAAAATATATGGACAGTTCTTTGGAATGCTCCCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
3UTR-3UTR GCA 90 bp TTTTACATCGTCATTCCAACTATGCTTACCCTTTATGACCATGTCTCTGCTCACACTCAAAATAAAGTCTaGATTATGCTTCTCAGAGCA +
Preference number: 2 (lower is better)
Translates to: FYIVIPTMLTLYDHVSAHTQNKV*IMLLRA
Trigger: TGCTCTGAGAAGCATAATGCAGACTTTATTTTGAGT...GTGAGCAGAGACATGGTCATAAAGGGTAAGCATAGTTGGAATGACGATGTAAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
3UTR-3UTR GCA 90 bp TATTTTTACATCGTCATTCCAACTATGCTTACCCTTTATGACCATGTCTCTGCTACTCAAAATAAAGTCTaGATTATGCTTCTCAGAGCA +
Preference number: 2 (lower is better)
Translates to: YFYIVIPTMLTLYDHVSATQNKV*IMLLRA
Trigger: TGCTCTGAGAAGCATAATGCAGACTTTATTTTGAGT...AGCAGAGACATGGTCATAAAGGGTAAGCATAGTTGGAATGACGATGTAAAAATA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
3UTR TCA 72 bp TTCTGCCAGGTAGGACTAGGGCATCACTCACTGCTCTaGGGTCGAATCCATTTCAAGGCGTGTCTTGGTGGC +
Preference number: 3 (lower is better)
Translates to: FCQVGLGHHSLL*GRIHFKACLGG
Trigger: GCCACCAAGACACGCCTTGAAATGGATTCGACCTCAGAGCAGTGAGTGATGCCCTAGTCCTACCTGGCAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220660.2
3UTR GCA 72 bp ACAGACACTGCATTACCTTTGGGAAAAGCTGAAAAGTaGTTCAGCTCTGAGGACACTGGCCTTCCCACAGCA +
Preference number: 3 (lower is better)
Translates to: TDTALPLGKAEK*FSSEDTGLPTA
Trigger: TGCTGTGGGAAGGCCAGTGTCCTCAGAGCTGAAGCACTTTTCAGCTTTTCCCAAAGGTAATGCAGTGTCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
3UTR CCA 72 bp TGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTaGGTTACAGACACTGCATTACCTTTGGGAAAAGCT +
Preference number: 3 (lower is better)
Translates to: CLSFKAWPLLPR*VTDTALPLGKA
Trigger: AGCTTTTCCCAAAGGTAATGCAGTGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
3UTR CCA 72 bp GCTCTGAGGTCGAATCCATTTCAAGGCGTGTCTTGGTaGCACAGTAATGGTGGGGTGATAAAATGTGCAGTC +
Preference number: 3 (lower is better)
Translates to: ALRSNPFQGVSW*HSNGGVIKCAV
Trigger: GACTGCACATTTTATCACCCCACCATTACTGTGCCACCAAGACACGCCTTGAAATGGATTCGACCTCAGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220660.2
3UTR CCA 72 bp ACTGCTCTGAGGTCGAATCCATTTCAAGGCGTGTCTTaGTGGCACAGTAATGGTGGGGTGATAAAATGTGCA +
Preference number: 3 (lower is better)
Translates to: TALRSNPFQGVS*WHSNGGVIKCA
Trigger: TGCACATTTTATCACCCCACCATTACTGTGCCACCAAGACACGCCTTGAAATGGATTCGACCTCAGAGCAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220660.2
3UTR-3UTR CAA 90 bp ACAAACATTTCTCAGCAAATTTACAGTTGGGAAAGGCTTTGCAAGGTGAAATGGCAGGCAGGCCAGTACTaGCAGCGCTCCAGAAGTTTT +
Preference number: 3 (lower is better)
Translates to: TNISQQIYSWERLCKVKWQAGQY*QRSRSF
Trigger: AAAACTTCTGGAGCGCTGCAAGTACTGGCCTGCCTG...CCATTTCACCTTGCAAAGCCTTTCCCAACTGTAAATTTGCTGAGAAATGTTTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223451.2
3UTR GCA 72 bp GGTCCACTCTACCAAAGTAGCACTCAAAATAAAGTCTaGATTATGCTTCTCAGAGCAAATTCATTTAGACAC +
Preference number: 3 (lower is better)
Translates to: GPLYQSSTQNKV*IMLLRANSFRH
Trigger: GTGTCTAAATGAATTTGCTCTGAGAAGCATAATGCAGACTTTATTTTGAGTGCTACTTTGGTAGAGTGGACC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
3UTR GCA 72 bp AACATTTCTCAGCAAATTTACAGTTGGGAAAGGCTTTaGAAGGTGAAATGGGATGATGGTATACACACTCAT +
Preference number: 3 (lower is better)
Translates to: NISQQIYSWERL*KVKWDDGIHTH
Trigger: ATGAGTGTGTATACCATCATCCCATTTCACCTTGCAAAGCCTTTCCCAACTGTAAATTTGCTGAGAAATGTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223451.2
3UTR GCA 72 bp AACTGTCCATATATTTTTACATCGTCATTCCAACTATaGTTACCCTTTATGACCATGTCTCTGCTCACTTTC +
Preference number: 3 (lower is better)
Translates to: NCPYIFTSSFQL*LPFMTMSLLTF
Trigger: GAAAGTGAGCAGAGACATGGTCATAAAGGGTAAGCATAGTTGGAATGACGATGTAAAAATATATGGACAGTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR TCA 90 bp GCTCTGAGGACACTGGCCTTCCCACAGCACTACAGCCCTAAGCTGCAAGTACCATCCGGATCTTGCGGCTaGTCTCGGTGCCGATTTCCA +
Preference number: 4 (lower is better)
Translates to: ALRTLAFPQHYSPKLQVPSGSCG*SRCRFP
Trigger: TGGAAATCGGCACCGAGATCAGCCGCAAGATCCGGA...TGGTACTTGCAGCTTAGGGCTGTAGTGCTGTGGGAAGGCCAGTGTCCTCAGAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR GCA 90 bp GCTCTGAGGACACTGGCCTTCCCACAGCACTACAGCCCTAAGCTGCAAGTACCACTGGGGGCCCTGTTTTaGCCCTGGACCATTTCTGCT +
Preference number: 4 (lower is better)
Translates to: ALRTLAFPQHYSPKLQVPLGALF*PWTISA
Trigger: AGCAGAAATGGTCCAGGGGCAAAACAGGGCCCCCAG...TGGTACTTGCAGCTTAGGGCTGTAGTGCTGTGGGAAGGCCAGTGTCCTCAGAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp GCTCTGAGGACACTGGCCTTCCCACAGCACTACAGCCCTAAGCTGCAAGTACCAGCTGCTAAGCACTGGTaGCTCACACAACCGTCCTGC +
Preference number: 4 (lower is better)
Translates to: ALRTLAFPQHYSPKLQVPAAKHW*LTQPSC
Trigger: GCAGGACGGTTGTGTGAGCCACCAGTGCTTAGCAGC...TGGTACTTGCAGCTTAGGGCTGTAGTGCTGTGGGAAGGCCAGTGTCCTCAGAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR TCA 90 bp GCTCTGAGGACACTGGCCTTCCCACAGCACTACAGCCCTAAGCTGCAAGTACCAAGGCTTTGCTGGTACTaGCACGCTGCTGGACAAGCT +
Preference number: 4 (lower is better)
Translates to: ALRTLAFPQHYSPKLQVPRLCWY*HAAGQA
Trigger: AGCTTGTCCAGCAGCGTGTCAGTACCAGCAAAGCCT...TGGTACTTGCAGCTTAGGGCTGTAGTGCTGTGGGAAGGCCAGTGTCCTCAGAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR GCA 90 bp GCTCTGAGGACACTGGCCTTCCCACAGCACTACAGCCCTAAGCTGCAAGTACCATGCCTGCTCAGCAAATaGAACTGCTGTGGGTGGAGG +
Preference number: 4 (lower is better)
Translates to: ALRTLAFPQHYSPKLQVPCLLSK*NCCGWR
Trigger: CCTCCACCCACAGCAGTTGCATTTGCTGAGCAGGCA...TGGTACTTGCAGCTTAGGGCTGTAGTGCTGTGGGAAGGCCAGTGTCCTCAGAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110105.10
CDS-3UTR TCA 90 bp CCAAAGCTGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGATCCGGATCTTGCGGCTaGTCTCGGTGCCGATTTCCA +
Preference number: 4 (lower is better)
Translates to: PKLPQFQSLATVTTLGYRSGSCG*SRCRFP
Trigger: TGGAAATCGGCACCGAGATCAGCCGCAAGATCCGGA...TCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCAGCTTTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR TCA 90 bp GGACACTGGCCTTCCCACAGCACTACAGCCCTAAGCTGCAAGTACCATTACCAATCCGGATCTTGCGGCTaGTCTCGGTGCCGATTTCCA +
Preference number: 4 (lower is better)
Translates to: GHWPSHSTTALSCKYHYQSGSCG*SRCRFP
Trigger: TGGAAATCGGCACCGAGATCAGCCGCAAGATCCGGA...TTGGTAATGGTACTTGCAGCTTAGGGCTGTAGTGCTGTGGGAAGGCCAGTGTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR GCA 90 bp AAAGCTGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACAGGGACGGCAGCTTCGTaGCTTCTCTCATCTCCCCGA +
Preference number: 4 (lower is better)
Translates to: KAASVSKPGHCYHAGLQTGTAAS*LLSSPR
Trigger: TCGGGGAGATGAGAGAAGGCACGAAGCTGCCGTCCC...TGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCAGCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR GCA 90 bp TGTTCCAAAGCTGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTAGGGACGGCAGCTTCGTaGCTTCTCTCATCTCCCCGA +
Preference number: 4 (lower is better)
Translates to: CSKAASVSKPGHCYHAGLGTAAS*LLSSPR
Trigger: TCGGGGAGATGAGAGAAGGCACGAAGCTGCCGTCCC...TAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCAGCTTTGGAACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR GCA 90 bp GCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACACTGCATCTGGGGGCCCTGTTTTaGCCCTGGACCATTTCTGCT +
Preference number: 4 (lower is better)
Translates to: ASVSKPGHCYHAGLQTLHLGALF*PWTISA
Trigger: AGCAGAAATGGTCCAGGGGCAAAACAGGGCCCCCAG...ATGCAGTGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR TCA 90 bp TGTTCCAAAGCTGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTAGGTGGAGGAGACCTCTaGGTCCCTTGTTTGAGGCTG +
Preference number: 4 (lower is better)
Translates to: CSKAASVSKPGHCYHAGLGGGDL*VPCLRL
Trigger: CAGCCTCAAACAAGGGACTCAGAGGTCTCCTCCACC...TAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCAGCTTTGGAACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp GGACACTGGCCTTCCCACAGCACTACAGCCCTAAGCTGCAAGTACCATTACCAAGTACTGACACGCTGCTaGACAAGCTTCCTATGCGGG +
Preference number: 4 (lower is better)
Translates to: GHWPSHSTTALSCKYHYQVLTRC*TSFLCG
Trigger: CCCGCATAGGAAGCTTGTCCAGCAGCGTGTCAGTAC...TTGGTAATGGTACTTGCAGCTTAGGGCTGTAGTGCTGTGGGAAGGCCAGTGTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp CCAAAGCTGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGAGTACTGACACGCTGCTaGACAAGCTTCCTATGCGGG +
Preference number: 4 (lower is better)
Translates to: PKLPQFQSLATVTTLGYRVLTRC*TSFLCG
Trigger: CCCGCATAGGAAGCTTGTCCAGCAGCGTGTCAGTAC...TCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCAGCTTTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR TCA 90 bp AAAGCTGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACAAGGCTTTGCTGGTACTaGCACGCTGCTGGACAAGCT +
Preference number: 4 (lower is better)
Translates to: KAASVSKPGHCYHAGLQTRLCWY*HAAGQA
Trigger: AGCTTGTCCAGCAGCGTGTCAGTACCAGCAAAGCCT...TGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCAGCTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR TCA 90 bp TGTTCCAAAGCTGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTAAGGCTTTGCTGGTACTaGCACGCTGCTGGACAAGCT +
Preference number: 4 (lower is better)
Translates to: CSKAASVSKPGHCYHAGLRLCWY*HAAGQA
Trigger: AGCTTGTCCAGCAGCGTGTCAGTACCAGCAAAGCCT...TAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCAGCTTTGGAACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR TCA 90 bp AAAGCTGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACACTGCATAAGGTGTCCTaGAAGGACCCGAAGGGCATC +
Preference number: 4 (lower is better)
Translates to: KAASVSKPGHCYHAGLQTLHKVS*KDPKGI
Trigger: GATGCCCTTCGGGTCCTTTCAGGACACCTTATGCAG...TGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCAGCTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110105.10
CDS-3UTR GCA 90 bp GCTCTGAGGACACTGGCCTTCCCACAGCACTACAGCCCTAAGCTGCAAGTACCATGGACAAGCTTCCTATaGGGGTCCCATAATCCTCAT +
Preference number: 4 (lower is better)
Translates to: ALRTLAFPQHYSPKLQVPWTSFL*GSHNPH
Trigger: ATGAGGATTATGGGACCCGCATAGGAAGCTTGTCCA...TGGTACTTGCAGCTTAGGGCTGTAGTGCTGTGGGAAGGCCAGTGTCCTCAGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR GCA 90 bp AAAGCTGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACAGACCCGAAGGGCATCTaGAGTCTTCATCCCCGAATC +
Preference number: 4 (lower is better)
Translates to: KAASVSKPGHCYHAGLQTDPKGI*SLHPRI
Trigger: GATTCGGGGATGAAGACTGCAGATGCCCTTCGGGTC...TGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCAGCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp AAAGCTGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACACAAGGCGTGTCTTGGTaGCACAGTAATGGTGGGGTG +
Preference number: 4 (lower is better)
Translates to: KAASVSKPGHCYHAGLQTQGVSW*HSNGGV
Trigger: CACCCCACCATTACTGTGCCACCAAGACACGCCTTG...TGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCAGCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp TGTTCCAAAGCTGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAAGGCGTGTCTTGGTaGCACAGTAATGGTGGGGTG +
Preference number: 4 (lower is better)
Translates to: CSKAASVSKPGHCYHAGLQGVSW*HSNGGV
Trigger: CACCCCACCATTACTGTGCCACCAAGACACGCCTTG...TAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCAGCTTTGGAACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp AAAGCTGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACATACGCTGCTAAGCACTaGTGGCTCACACAACCGTCC +
Preference number: 4 (lower is better)
Translates to: KAASVSKPGHCYHAGLQTYAAKH*WLTQPS
Trigger: GGACGGTTGTGTGAGCCACCAGTGCTTAGCAGCGTA...TGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCAGCTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp TGTTCCAAAGCTGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTAGTACTGACACGCTGCTaGACAAGCTTCCTATGCGGG +
Preference number: 4 (lower is better)
Translates to: CSKAASVSKPGHCYHAGLVLTRC*TSFLCG
Trigger: CCCGCATAGGAAGCTTGTCCAGCAGCGTGTCAGTAC...TAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCAGCTTTGGAACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR TCA 90 bp GCTCTGAGGACACTGGCCTTCCCACAGCACTACAGCCCTAAGCTGCAAGTACCACAAGGTGAAATGGGATaGTGGTATACACACTCATCC +
Preference number: 4 (lower is better)
Translates to: ALRTLAFPQHYSPKLQVPQGEMG*WYTHSS
Trigger: GGATGAGTGTGTATACCATCATCCCATTTCACCTTG...TGGTACTTGCAGCTTAGGGCTGTAGTGCTGTGGGAAGGCCAGTGTCCTCAGAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR GCA 90 bp GCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACACTGCATAGGCAGGCCAGTACTTaGAGCGCTCCAGAAGTTTTT +
Preference number: 4 (lower is better)
Translates to: ASVSKPGHCYHAGLQTLHRQAST*SAPEVF
Trigger: AAAAACTTCTGGAGCGCTGCAAGTACTGGCCTGCCT...ATGCAGTGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR GCA 90 bp ACTTTCAGAAAGGCACAGGACCTCGGTCCACTCTACCAAAGTAGCACTCAAAATGGGACGGCAGCTTCGTaGCTTCTCTCATCTCCCCGA +
Preference number: 4 (lower is better)
Translates to: TFRKAQDLGPLYQSSTQNGTAAS*LLSSPR
Trigger: TCGGGGAGATGAGAGAAGGCACGAAGCTGCCGTCCC...ATTTTGAGTGCTACTTTGGTAGAGTGGACCGAGGTCCTGTGCCTTTCTGAAAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp TGTTCCAAAGCTGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAAATGCAACTGCTGTaGGTGGAGGAGACCTCTGAG +
Preference number: 4 (lower is better)
Translates to: CSKAASVSKPGHCYHAGLQMQLL*VEETSE
Trigger: CTCAGAGGTCTCCTCCACCCACAGCAGTTGCATTTG...TAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCAGCTTTGGAACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110105.10
CDS-3UTR GCA 90 bp GCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACACTGCATTGGACAAGCTTCCTATaGGGGTCCCATAATCCTCAT +
Preference number: 4 (lower is better)
Translates to: ASVSKPGHCYHAGLQTLHWTSFL*GSHNPH
Trigger: ATGAGGATTATGGGACCCGCATAGGAAGCTTGTCCA...ATGCAGTGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp GGACACTGGCCTTCCCACAGCACTACAGCCCTAAGCTGCAAGTACCATTACCAAGACTATCGAAGATGCTaGCGTCAGGAGACTTTAGAC +
Preference number: 4 (lower is better)
Translates to: GHWPSHSTTALSCKYHYQDYRRC*RQETLD
Trigger: GTCTAAAGTCTCCTGACGCCAGCATCTTCGATAGTC...TTGGTAATGGTACTTGCAGCTTAGGGCTGTAGTGCTGTGGGAAGGCCAGTGTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp AAAGCTGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACAATCTTCAGAGGGTGCTaGTTCCCTCAGAGGTTTCAC +
Preference number: 4 (lower is better)
Translates to: KAASVSKPGHCYHAGLQTIFRGC*FPQRFH
Trigger: GTGAAACCTCTGAGGGAACCAGCACCCTCTGAAGAT...TGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCAGCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp CCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACACTGCATTATCTTCAGAGGGTGCTaGTTCCCTCAGAGGTTTCAC +
Preference number: 4 (lower is better)
Translates to: PQFQSLATVTTLGYRHCIIFRGC*FPQRFH
Trigger: GTGAAACCTCTGAGGGAACCAGCACCCTCTGAAGAT...AATGCAGTGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp ACTTTCAGAAAGGCACAGGACCTCGGTCCACTCTACCAAAGTAGCACTCAAAATGCTGCTAAGCACTGGTaGCTCACACAACCGTCCTGC +
Preference number: 4 (lower is better)
Translates to: TFRKAQDLGPLYQSSTQNAAKHW*LTQPSC
Trigger: GCAGGACGGTTGTGTGAGCCACCAGTGCTTAGCAGC...ATTTTGAGTGCTACTTTGGTAGAGTGGACCGAGGTCCTGTGCCTTTCTGAAAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp CCAAAGCTGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGAGAGAAGTTCGAGTTCTaGGAGCAACTGGAAGTGTCT +
Preference number: 4 (lower is better)
Translates to: PKLPQFQSLATVTTLGYREKFEF*EQLEVS
Trigger: AGACACTTCCAGTTGCTCCCAGAACTCGAACTTCTC...TCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCAGCTTTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR TCA 90 bp GCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACACTGCATCAAGGTGAAATGGGATaGTGGTATACACACTCATCC +
Preference number: 4 (lower is better)
Translates to: ASVSKPGHCYHAGLQTLHQGEMG*WYTHSS
Trigger: GGATGAGTGTGTATACCATCATCCCATTTCACCTTG...ATGCAGTGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR TCA 90 bp CCAAAGCTGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGATCAGGTCTCGTACACTaGGTGTTAAACCTACAGTGT +
Preference number: 4 (lower is better)
Translates to: PKLPQFQSLATVTTLGYRSGLVH*VLNLQC
Trigger: ACACTGTAGGTTTAACACTCAGTGTACGAGACCTGA...TCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCAGCTTTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR TCA 90 bp TGTTCCAAAGCTGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACATGGAGCCATACGGTaGATCGAATTGTGTTGTTCC +
Preference number: 4 (lower is better)
Translates to: CSKAASVSKPGHCYHAGLHGAIR*IELCCS
Trigger: GGAACAACACAATTCGATTCACCGTATGGCTCCATG...TAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCAGCTTTGGAACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR TCA 90 bp CCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACACTGCATTCATGGAGCCATACGGTaGATCGAATTGTGTTGTTCC +
Preference number: 4 (lower is better)
Translates to: PQFQSLATVTTLGYRHCIHGAIR*IELCCS
Trigger: GGAACAACACAATTCGATTCACCGTATGGCTCCATG...AATGCAGTGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR TCA 90 bp AAAGCTGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACATCTCATCTCCCCGACTaGAACTGCTCTTGTTTGAAG +
Preference number: 4 (lower is better)
Translates to: KAASVSKPGHCYHAGLQTSHLPD*NCSCLK
Trigger: CTTCAAACAAGAGCAGTTTCAGTCGGGGAGATGAGA...TGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCAGCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR TCA 90 bp GGACACTGGCCTTCCCACAGCACTACAGCCCTAAGCTGCAAGTACCATTACCAAGGATTTCTGCTCCTGTaGACTTGTAGAAACTCTGGA +
Preference number: 4 (lower is better)
Translates to: GHWPSHSTTALSCKYHYQGFLLL*TCRNSG
Trigger: TCCAGAGTTTCTACAAGTTCACAGGAGCAGAAATCC...TTGGTAATGGTACTTGCAGCTTAGGGCTGTAGTGCTGTGGGAAGGCCAGTGTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR TCA 90 bp GCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACACTGCATGCTAGCAATTCTTCTTaGGAAGTTCGAGTTCTGGGA +
Preference number: 4 (lower is better)
Translates to: ASVSKPGHCYHAGLQTLHASNSS*EVRVLG
Trigger: TCCCAGAACTCGAACTTCTCAAGAAGAATTGCTAGC...ATGCAGTGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR TCA 90 bp GGACACTGGCCTTCCCACAGCACTACAGCCCTAAGCTGCAAGTACCATTACCAAGCTAGCAATTCTTCTTaGGAAGTTCGAGTTCTGGGA +
Preference number: 4 (lower is better)
Translates to: GHWPSHSTTALSCKYHYQASNSS*EVRVLG
Trigger: TCCCAGAACTCGAACTTCTCAAGAAGAATTGCTAGC...TTGGTAATGGTACTTGCAGCTTAGGGCTGTAGTGCTGTGGGAAGGCCAGTGTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR GCA 90 bp CCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACACTGCATTGTGAGTACCAGTGTCTaGATTTCTACTTGCAGGTGG +
Preference number: 4 (lower is better)
Translates to: PQFQSLATVTTLGYRHCIVSTSV*ISTCRW
Trigger: CCACCTGCAAGTAGAAATGCAGACACTGGTACTCAC...AATGCAGTGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp GCTCTGAGGACACTGGCCTTCCCACAGCACTACAGCCCTAAGCTGCAAGTACCACTTTGCAAGGTGAAATaGGATGATGGTATACACACT +
Preference number: 4 (lower is better)
Translates to: ALRTLAFPQHYSPKLQVPLCKVK*DDGIHT
Trigger: AGTGTGTATACCATCATCCCATTTCACCTTGCAAAG...TGGTACTTGCAGCTTAGGGCTGTAGTGCTGTGGGAAGGCCAGTGTCCTCAGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp ACTTTCAGAAAGGCACAGGACCTCGGTCCACTCTACCAAAGTAGCACTCAAAATTACGCTGCTAAGCACTaGTGGCTCACACAACCGTCC +
Preference number: 4 (lower is better)
Translates to: TFRKAQDLGPLYQSSTQNYAAKH*WLTQPS
Trigger: GGACGGTTGTGTGAGCCACCAGTGCTTAGCAGCGTA...ATTTTGAGTGCTACTTTGGTAGAGTGGACCGAGGTCCTGTGCCTTTCTGAAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp AAAGCTGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACAGAGAAGTTCGAGTTCTaGGAGCAACTGGAAGTGTCT +
Preference number: 4 (lower is better)
Translates to: KAASVSKPGHCYHAGLQTEKFEF*EQLEVS
Trigger: AGACACTTCCAGTTGCTCCCAGAACTCGAACTTCTC...TGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCAGCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp GGACACTGGCCTTCCCACAGCACTACAGCCCTAAGCTGCAAGTACCATTACCAATTCATCCCCGAATCCTaGTTGGGTGTCACTACTATT +
Preference number: 4 (lower is better)
Translates to: GHWPSHSTTALSCKYHYQFIPES*LGVTTI
Trigger: AATAGTAGTGACACCCAACCAGGATTCGGGGATGAA...TTGGTAATGGTACTTGCAGCTTAGGGCTGTAGTGCTGTGGGAAGGCCAGTGTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110105.10
CDS-3UTR TCA 90 bp CCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACACTGCATTTCAGGTCTCGTACACTaGGTGTTAAACCTACAGTGT +
Preference number: 4 (lower is better)
Translates to: PQFQSLATVTTLGYRHCISGLVH*VLNLQC
Trigger: ACACTGTAGGTTTAACACTCAGTGTACGAGACCTGA...AATGCAGTGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR TCA 90 bp AAAGCTGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACAGGATTTCTGCTCCTGTaGACTTGTAGAAACTCTGGA +
Preference number: 4 (lower is better)
Translates to: KAASVSKPGHCYHAGLQTGFLLL*TCRNSG
Trigger: TCCAGAGTTTCTACAAGTTCACAGGAGCAGAAATCC...TGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCAGCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR TCA 90 bp AAAGCTGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACAGCTAGCAATTCTTCTTaGGAAGTTCGAGTTCTGGGA +
Preference number: 4 (lower is better)
Translates to: KAASVSKPGHCYHAGLQTASNSS*EVRVLG
Trigger: TCCCAGAACTCGAACTTCTCAAGAAGAATTGCTAGC...TGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCAGCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp GGACACTGGCCTTCCCACAGCACTACAGCCCTAAGCTGCAAGTACCATTACCAAAAACCTACAGTGTTTTaGGTGGTAGAAGGGACATTC +
Preference number: 4 (lower is better)
Translates to: GHWPSHSTTALSCKYHYQKPTVF*VVEGTF
Trigger: GAATGTCCCTTCTACCACCCAAAACACTGTAGGTTT...TTGGTAATGGTACTTGCAGCTTAGGGCTGTAGTGCTGTGGGAAGGCCAGTGTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp CCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACACTGCATTAGCTTGTTTAGAAGGTaGAAGAGAAGGTCTCCTCTC +
Preference number: 4 (lower is better)
Translates to: PQFQSLATVTTLGYRHCISLFRR*KRRSPL
Trigger: GAGAGGAGACCTTCTCTTCCACCTTCTAAACAAGCT...AATGCAGTGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
3UTR CAA 72 bp CTGTTACCACGCTGGGTTACAGACACTGCATTACCTTaGGGAAAAGCTGAAAAGTGCTTCAGCTCTGAGGAC +
Preference number: 4 (lower is better)
Translates to: LLPRWVTDTALP*GKAEKCFSSED
Trigger: GTCCTCAGAGCTGAAGCACTTTTCAGCTTTTCCCAAAGGTAATGCAGTGTCTGTAACCCAGCGTGGTAACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR TCA 90 bp GCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACACTGCATAGCTCCATCATCATATaGATGTCTGACATTAGTGGA +
Preference number: 4 (lower is better)
Translates to: ASVSKPGHCYHAGLQTLHSSIII*MSDISG
Trigger: TCCACTAATGTCAGACATTCATATGATGATGGAGCT...ATGCAGTGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR TCA 90 bp CCAAAGCTGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGATATCCAAGTTGTTTCTaGAGAAGGGGCTATAAGTGT +
Preference number: 4 (lower is better)
Translates to: PKLPQFQSLATVTTLGYRYPSCF*RRGYKC
Trigger: ACACTTATAGCCCCTTCTTCAGAAACAACTTGGATA...TCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCAGCTTTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR TCA 90 bp TCTCAGCAAATTTACAGTTGGGAAAGGCTTTGCAAGGTGAAATGGGATGATGGTCTGCATAAGGTGTCCTaGAAGGACCCGAAGGGCATC +
Preference number: 4 (lower is better)
Translates to: SQQIYSWERLCKVKWDDGLHKVS*KDPKGI
Trigger: GATGCCCTTCGGGTCCTTTCAGGACACCTTATGCAG...ACCATCATCCCATTTCACCTTGCAAAGCCTTTCCCAACTGTAAATTTGCTGAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223451.2
CDS-3UTR GCA 90 bp CCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACACTGCATTTTTTTCTGGTTTCTGTaGCACACTCAGGTCAGTCAT +
Preference number: 4 (lower is better)
Translates to: PQFQSLATVTTLGYRHCIFFWFL*HTQVSH
Trigger: ATGACTGACCTGAGTGTGGCACAGAAACCAGAAAAA...AATGCAGTGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGG
48% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR GCA 90 bp TGTTCCAAAGCTGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTAAGTTGGGAAAGGCTTTaGAAGGTGAAATGGGATGAT +
Preference number: 4 (lower is better)
Translates to: CSKAASVSKPGHCYHAGLSWERL*KVKWDD
Trigger: ATCATCCCATTTCACCTTGCAAAGCCTTTCCCAACT...TAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCAGCTTTGGAACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR GCA 90 bp AAAGCTGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACAAGTTGGGAAAGGCTTTaGAAGGTGAAATGGGATGAT +
Preference number: 4 (lower is better)
Translates to: KAASVSKPGHCYHAGLQTSWERL*KVKWDD
Trigger: ATCATCCCATTTCACCTTGCAAAGCCTTTCCCAACT...TGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCAGCTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR GCA 90 bp GGACACTGGCCTTCCCACAGCACTACAGCCCTAAGCTGCAAGTACCATTACCAAGTCTGCATTTCTACTTaGAGGTGGTCGATAAATTTC +
Preference number: 4 (lower is better)
Translates to: GHWPSHSTTALSCKYHYQVCIST*RWSINF
Trigger: GAAATTTATCGACCACCTGCAAGTAGAAATGCAGAC...TTGGTAATGGTACTTGCAGCTTAGGGCTGTAGTGCTGTGGGAAGGCCAGTGTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR TCA 90 bp ACTTTCAGAAAGGCACAGGACCTCGGTCCACTCTACCAAAGTAGCACTCAAAATTCTCATCTCCCCGACTaGAACTGCTCTTGTTTGAAG +
Preference number: 4 (lower is better)
Translates to: TFRKAQDLGPLYQSSTQNSHLPD*NCSCLK
Trigger: CTTCAAACAAGAGCAGTTTCAGTCGGGGAGATGAGA...ATTTTGAGTGCTACTTTGGTAGAGTGGACCGAGGTCCTGTGCCTTTCTGAAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR TCA 90 bp TGTTCCAAAGCTGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTAAGCTCCATCATCATATaGATGTCTGACATTAGTGGA +
Preference number: 4 (lower is better)
Translates to: CSKAASVSKPGHCYHAGLSSIII*MSDISG
Trigger: TCCACTAATGTCAGACATTCATATGATGATGGAGCT...TAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCAGCTTTGGAACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR GCA 90 bp GGACACTGGCCTTCCCACAGCACTACAGCCCTAAGCTGCAAGTACCATTACCAAACATTAGTGGATTTCTaGTCCTGTGAACTTGTAGAA +
Preference number: 4 (lower is better)
Translates to: GHWPSHSTTALSCKYHYQTLVDF*SCELVE
Trigger: TTCTACAAGTTCACAGGAGCAGAAATCCACTAATGT...TTGGTAATGGTACTTGCAGCTTAGGGCTGTAGTGCTGTGGGAAGGCCAGTGTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR GCA 90 bp CCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACACTGCATTGTCTGCATTTCTACTTaGAGGTGGTCGATAAATTTC +
Preference number: 4 (lower is better)
Translates to: PQFQSLATVTTLGYRHCIVCIST*RWSINF
Trigger: GAAATTTATCGACCACCTGCAAGTAGAAATGCAGAC...AATGCAGTGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR GCA 90 bp ATTTTTACATCGTCATTCCAACTATGCTTACCCTTTATGACCATGTCTCTGCTCCTGGGGGCCCTGTTTTaGCCCTGGACCATTTCTGCT +
Preference number: 4 (lower is better)
Translates to: IFTSSFQLCLPFMTMSLLLGALF*PWTISA
Trigger: AGCAGAAATGGTCCAGGGGCAAAACAGGGCCCCCAG...GAGCAGAGACATGGTCATAAAGGGTAAGCATAGTTGGAATGACGATGTAAAAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR GCA 90 bp AACATTTCTCAGCAAATTTACAGTTGGGAAAGGCTTTGCAAGGTGAAATGGGATCTGGGGGCCCTGTTTTaGCCCTGGACCATTTCTGCT +
Preference number: 4 (lower is better)
Translates to: NISQQIYSWERLCKVKWDLGALF*PWTISA
Trigger: AGCAGAAATGGTCCAGGGGCAAAACAGGGCCCCCAG...ATCCCATTTCACCTTGCAAAGCCTTTCCCAACTGTAAATTTGCTGAGAAATGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000223451.2
CDS-3UTR GCA 90 bp CAGCAAATTTACAGTTGGGAAAGGCTTTGCAAGGTGAAATGGGATGATGGTATAGACCCGAAGGGCATCTaGAGTCTTCATCCCCGAATC +
Preference number: 4 (lower is better)
Translates to: QQIYSWERLCKVKWDDGIDPKGI*SLHPRI
Trigger: GATTCGGGGATGAAGACTGCAGATGCCCTTCGGGTC...TATACCATCATCCCATTTCACCTTGCAAAGCCTTTCCCAACTGTAAATTTGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223451.2
CDS-3UTR GCA 90 bp GGACACTGGCCTTCCCACAGCACTACAGCCCTAAGCTGCAAGTACCATTACCAATATAAACTTGGGACTTaGAGGTTTATCTGGTTGTAC +
Preference number: 4 (lower is better)
Translates to: GHWPSHSTTALSCKYHYQYKLGT*RFIWLY
Trigger: GTACAACCAGATAAACCTGCAAGTCCCAAGTTTATA...TTGGTAATGGTACTTGCAGCTTAGGGCTGTAGTGCTGTGGGAAGGCCAGTGTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp CCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACACTGCATTTGTTTCTACCATTACTaGATCAATTTGCAGTCGGGA +
Preference number: 4 (lower is better)
Translates to: PQFQSLATVTTLGYRHCICFYHY*INLQSG
Trigger: TCCCGACTGCAAATTGATCCAGTAATGGTAGAAACA...AATGCAGTGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp TTTTACATCGTCATTCCAACTATGCTTACCCTTTATGACCATGTCTCTGCTCACCAAGGCGTGTCTTGGTaGCACAGTAATGGTGGGGTG +
Preference number: 4 (lower is better)
Translates to: FYIVIPTMLTLYDHVSAHQGVSW*HSNGGV
Trigger: CACCCCACCATTACTGTGCCACCAAGACACGCCTTG...GTGAGCAGAGACATGGTCATAAAGGGTAAGCATAGTTGGAATGACGATGTAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp GGACACTGGCCTTCCCACAGCACTACAGCCCTAAGCTGCAAGTACCATTACCAAAAGTGTCTGTTTCTGTaGAACTGCAGAATAGTTAGT +
Preference number: 4 (lower is better)
Translates to: GHWPSHSTTALSCKYHYQKCLFL*NCRIVS
Trigger: ACTAACTATTCTGCAGTTCCACAGAAACAGACACTT...TTGGTAATGGTACTTGCAGCTTAGGGCTGTAGTGCTGTGGGAAGGCCAGTGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp ACTTTCAGAAAGGCACAGGACCTCGGTCCACTCTACCAAAGTAGCACTCAAAATGAGAAGTTCGAGTTCTaGGAGCAACTGGAAGTGTCT +
Preference number: 4 (lower is better)
Translates to: TFRKAQDLGPLYQSSTQNEKFEF*EQLEVS
Trigger: AGACACTTCCAGTTGCTCCCAGAACTCGAACTTCTC...ATTTTGAGTGCTACTTTGGTAGAGTGGACCGAGGTCCTGTGCCTTTCTGAAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp CCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACACTGCATTTGTCTGCATGGACCATaGATTCCATGTCATAGTAAT +
Preference number: 4 (lower is better)
Translates to: PQFQSLATVTTLGYRHCICLHGP*IPCHSN
Trigger: ATTACTATGACATGGAATCCATGGTCCATGCAGACA...AATGCAGTGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110105.10
CDS-3UTR TCA 90 bp ACTTTCAGAAAGGCACAGGACCTCGGTCCACTCTACCAAAGTAGCACTCAAAATCAAGGTGAAATGGGATaGTGGTATACACACTCATCC +
Preference number: 4 (lower is better)
Translates to: TFRKAQDLGPLYQSSTQNQGEMG*WYTHSS
Trigger: GGATGAGTGTGTATACCATCATCCCATTTCACCTTG...ATTTTGAGTGCTACTTTGGTAGAGTGGACCGAGGTCCTGTGCCTTTCTGAAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR TCA 90 bp GACCTCGGTCCACTCTACCAAAGTAGCACTCAAAATAAAGTCTGCATTATGCTTTTGTTTGAAGGCACGTaGCTATCGAAGATGCTGGCG +
Preference number: 4 (lower is better)
Translates to: DLGPLYQSSTQNKVCIMLLFEGT*LSKMLA
Trigger: CGCCAGCATCTTCGATAGTCACGTGCCTTCAAACAA...AAGCATAATGCAGACTTTATTTTGAGTGCTACTTTGGTAGAGTGGACCGAGGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR GCA 90 bp TGTTCCAAAGCTGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTAATTACTGGATCAATTTaGAGTCGGGATAACAATTGC +
Preference number: 4 (lower is better)
Translates to: CSKAASVSKPGHCYHAGLITGSI*SRDNNC
Trigger: GCAATTGTTATCCCGACTGCAAATTGATCCAGTAAT...TAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCAGCTTTGGAACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR GCA 90 bp TGTTCCAAAGCTGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTAACATTAGTGGATTTCTaGTCCTGTGAACTTGTAGAA +
Preference number: 4 (lower is better)
Translates to: CSKAASVSKPGHCYHAGLTLVDF*SCELVE
Trigger: TTCTACAAGTTCACAGGAGCAGAAATCCACTAATGT...TAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCAGCTTTGGAACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR GCA 90 bp GCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACACTGCATTGTATTATCTCCTTTTaGTTCCTCTTCTTTAACAGG +
Preference number: 4 (lower is better)
Translates to: ASVSKPGHCYHAGLQTLHCIISF*FLFFNR
Trigger: CCTGTTAAAGAAGAGGAAGCAAAAGGAGATAATACA...ATGCAGTGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp GGACACTGGCCTTCCCACAGCACTACAGCCCTAAGCTGCAAGTACCATTACCAAATCAATGAGATCATCTaGTTCTGGCTTGATATCAAT +
Preference number: 4 (lower is better)
Translates to: GHWPSHSTTALSCKYHYQINEII*FWLDIN
Trigger: ATTGATATCAAGCCAGAACCAGATGATCTCATTGAT...TTGGTAATGGTACTTGCAGCTTAGGGCTGTAGTGCTGTGGGAAGGCCAGTGTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp CCAAAGCTGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGAATCAATGAGATCATCTaGTTCTGGCTTGATATCAAT +
Preference number: 4 (lower is better)
Translates to: PKLPQFQSLATVTTLGYRINEII*FWLDIN
Trigger: ATTGATATCAAGCCAGAACCAGATGATCTCATTGAT...TCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCAGCTTTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp TATTTTTACATCGTCATTCCAACTATGCTTACCCTTTATGACCATGTCTCTGCTGCTGCTAAGCACTGGTaGCTCACACAACCGTCCTGC +
Preference number: 4 (lower is better)
Translates to: YFYIVIPTMLTLYDHVSAAAKHW*LTQPSC
Trigger: GCAGGACGGTTGTGTGAGCCACCAGTGCTTAGCAGC...AGCAGAGACATGGTCATAAAGGGTAAGCATAGTTGGAATGACGATGTAAAAATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp ACTTTCAGAAAGGCACAGGACCTCGGTCCACTCTACCAAAGTAGCACTCAAAATAGCTTGTTTAGAAGGTaGAAGAGAAGGTCTCCTCTC +
Preference number: 4 (lower is better)
Translates to: TFRKAQDLGPLYQSSTQNSLFRR*KRRSPL
Trigger: GAGAGGAGACCTTCTCTTCCACCTTCTAAACAAGCT...ATTTTGAGTGCTACTTTGGTAGAGTGGACCGAGGTCCTGTGCCTTTCTGAAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp GACCTCGGTCCACTCTACCAAAGTAGCACTCAAAATAAAGTCTGCATTATGCTTGCCCTGTTTTGCCCCTaGACCATTTCTGCTAGCAAT +
Preference number: 4 (lower is better)
Translates to: DLGPLYQSSTQNKVCIMLALFCP*TISASN
Trigger: ATTGCTAGCAGAAATGGTCCAGGGGCAAAACAGGGC...AAGCATAATGCAGACTTTATTTTGAGTGCTACTTTGGTAGAGTGGACCGAGGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp TCTCAGCAAATTTACAGTTGGGAAAGGCTTTGCAAGGTGAAATGGGATGATGGTGCCCTGTTTTGCCCCTaGACCATTTCTGCTAGCAAT +
Preference number: 4 (lower is better)
Translates to: SQQIYSWERLCKVKWDDGALFCP*TISASN
Trigger: ATTGCTAGCAGAAATGGTCCAGGGGCAAAACAGGGC...ACCATCATCCCATTTCACCTTGCAAAGCCTTTCCCAACTGTAAATTTGCTGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223451.2
CDS-3UTR CCA 90 bp GACCTCGGTCCACTCTACCAAAGTAGCACTCAAAATAAAGTCTGCATTATGCTTCAGTCATCTCGGCGTTaGAAAAGCTACCATCTGGGT +
Preference number: 4 (lower is better)
Translates to: DLGPLYQSSTQNKVCIMLQSSRR*KSYHLG
Trigger: ACCCAGATGGTAGCTTTTCCAACGCCGAGATGACTG...AAGCATAATGCAGACTTTATTTTGAGTGCTACTTTGGTAGAGTGGACCGAGGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp ACTAGGGCATCACTCACTGCTCTGAGGTCGAATCCATTTCAAGGCGTGTCTTGGAAAACTTCTTACTTTTaGGTGGTAGAAGGGACATTC +
Preference number: 4 (lower is better)
Translates to: TRASLTALRSNPFQGVSWKTSYF*VVEGTF
Trigger: GAATGTCCCTTCTACCACCCAAAAGTAAGAAGTTTT...CCAAGACACGCCTTGAAATGGATTCGACCTCAGAGCAGTGAGTGATGCCCTAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220660.2
CDS-3UTR TCA 90 bp ACTTTCAGAAAGGCACAGGACCTCGGTCCACTCTACCAAAGTAGCACTCAAAATAAAGGCTTTGCAAGGTaGAATGGGATGATGGTATAC +
Preference number: 4 (lower is better)
Translates to: TFRKAQDLGPLYQSSTQNKGFAR*NGMMVY
Trigger: GTATACCATCATCCCATTTCACCTTGCAAAGCCTTT...ATTTTGAGTGCTACTTTGGTAGAGTGGACCGAGGTCCTGTGCCTTTCTGAAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR TCA 90 bp TTTTACATCGTCATTCCAACTATGCTTACCCTTTATGACCATGTCTCTGCTCACCACATCTCCTCCTCTTaGTCTGACATGTATCCTGGG +
Preference number: 4 (lower is better)
Translates to: FYIVIPTMLTLYDHVSAHHISSS*SDMYPG
Trigger: CCCAGGATACATGTCAGATCAAGAGGAGGAGATGTG...GTGAGCAGAGACATGGTCATAAAGGGTAAGCATAGTTGGAATGACGATGTAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110105.10
CDS-3UTR GCA 90 bp ACTTTCAGAAAGGCACAGGACCTCGGTCCACTCTACCAAAGTAGCACTCAAAATTTTTTCTGGTTTCTGTaGCACACTCAGGTCAGTCAT +
Preference number: 4 (lower is better)
Translates to: TFRKAQDLGPLYQSSTQNFFWFL*HTQVSH
Trigger: ATGACTGACCTGAGTGTGGCACAGAAACCAGAAAAA...ATTTTGAGTGCTACTTTGGTAGAGTGGACCGAGGTCCTGTGCCTTTCTGAAAGT
44% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR GCA 90 bp AAAGCTGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACATGTATTATCTCCTTTTaGTTCCTCTTCTTTAACAGG +
Preference number: 4 (lower is better)
Translates to: KAASVSKPGHCYHAGLQTCIISF*FLFFNR
Trigger: CCTGTTAAAGAAGAGGAAGCAAAAGGAGATAATACA...TGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCAGCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR GCA 90 bp CCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACACTGCATTTGTATTATCTCCTTTTaGTTCCTCTTCTTTAACAGG +
Preference number: 4 (lower is better)
Translates to: PQFQSLATVTTLGYRHCICIISF*FLFFNR
Trigger: CCTGTTAAAGAAGAGGAAGCAAAAGGAGATAATACA...AATGCAGTGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp ACTTTCAGAAAGGCACAGGACCTCGGTCCACTCTACCAAAGTAGCACTCAAAATCAGCAAATTTACAGTTaGGAAAGGCTTTGCAAGGTG +
Preference number: 4 (lower is better)
Translates to: TFRKAQDLGPLYQSSTQNQQIYS*ERLCKV
Trigger: CACCTTGCAAAGCCTTTCCCAACTGTAAATTTGCTG...ATTTTGAGTGCTACTTTGGTAGAGTGGACCGAGGTCCTGTGCCTTTCTGAAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp GACCTCGGTCCACTCTACCAAAGTAGCACTCAAAATAAAGTCTGCATTATGCTTGACTATCGAAGATGCTaGCGTCAGGAGACTTTAGAC +
Preference number: 4 (lower is better)
Translates to: DLGPLYQSSTQNKVCIMLDYRRC*RQETLD
Trigger: GTCTAAAGTCTCCTGACGCCAGCATCTTCGATAGTC...AAGCATAATGCAGACTTTATTTTGAGTGCTACTTTGGTAGAGTGGACCGAGGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp TGGGAGCATTCCAAAGAACTGTCCATATATTTTTACATCGTCATTCCAACTATGTACGCTGCTAAGCACTaGTGGCTCACACAACCGTCC +
Preference number: 4 (lower is better)
Translates to: WEHSKELSIYFYIVIPTMYAAKH*WLTQPS
Trigger: GGACGGTTGTGTGAGCCACCAGTGCTTAGCAGCGTA...CATAGTTGGAATGACGATGTAAAAATATATGGACAGTTCTTTGGAATGCTCCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp TCTCAGCAAATTTACAGTTGGGAAAGGCTTTGCAAGGTGAAATGGGATGATGGTGAGAAGTTCGAGTTCTaGGAGCAACTGGAAGTGTCT +
Preference number: 4 (lower is better)
Translates to: SQQIYSWERLCKVKWDDGEKFEF*EQLEVS
Trigger: AGACACTTCCAGTTGCTCCCAGAACTCGAACTTCTC...ACCATCATCCCATTTCACCTTGCAAAGCCTTTCCCAACTGTAAATTTGCTGAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223451.2
CDS-3UTR TCA 90 bp ATTTTTACATCGTCATTCCAACTATGCTTACCCTTTATGACCATGTCTCTGCTCTTGTTTGAAGGCACGTaGCTATCGAAGATGCTGGCG +
Preference number: 4 (lower is better)
Translates to: IFTSSFQLCLPFMTMSLLLFEGT*LSKMLA
Trigger: CGCCAGCATCTTCGATAGTCACGTGCCTTCAAACAA...GAGCAGAGACATGGTCATAAAGGGTAAGCATAGTTGGAATGACGATGTAAAAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR TCA 90 bp TTTTACATCGTCATTCCAACTATGCTTACCCTTTATGACCATGTCTCTGCTCACTCTCATCTCCCCGACTaGAACTGCTCTTGTTTGAAG +
Preference number: 4 (lower is better)
Translates to: FYIVIPTMLTLYDHVSAHSHLPD*NCSCLK
Trigger: CTTCAAACAAGAGCAGTTTCAGTCGGGGAGATGAGA...GTGAGCAGAGACATGGTCATAAAGGGTAAGCATAGTTGGAATGACGATGTAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR GCA 90 bp GACCTCGGTCCACTCTACCAAAGTAGCACTCAAAATAAAGTCTGCATTATGCTTTGGGGTGATAAAATGTaGAGTCAGGTCTCGTACACT +
Preference number: 4 (lower is better)
Translates to: DLGPLYQSSTQNKVCIMLWGDKM*SQVSYT
Trigger: AGTGTACGAGACCTGACTGCACATTTTATCACCCCA...AAGCATAATGCAGACTTTATTTTGAGTGCTACTTTGGTAGAGTGGACCGAGGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR GCA 90 bp TTTTACATCGTCATTCCAACTATGCTTACCCTTTATGACCATGTCTCTGCTCACTGGACAAGCTTCCTATaGGGGTCCCATAATCCTCAT +
Preference number: 4 (lower is better)
Translates to: FYIVIPTMLTLYDHVSAHWTSFL*GSHNPH
Trigger: ATGAGGATTATGGGACCCGCATAGGAAGCTTGTCCA...GTGAGCAGAGACATGGTCATAAAGGGTAAGCATAGTTGGAATGACGATGTAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR GCA 90 bp TGGGAGCATTCCAAAGAACTGTCCATATATTTTTACATCGTCATTCCAACTATGGGTCCTCAAGCTGCCTaGTCAGCAAATGCAACTGCT +
Preference number: 4 (lower is better)
Translates to: WEHSKELSIYFYIVIPTMGPQAA*SANATA
Trigger: AGCAGTTGCATTTGCTGAGCAGGCAGCTTGAGGACC...CATAGTTGGAATGACGATGTAAAAATATATGGACAGTTCTTTGGAATGCTCCCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110105.10
CDS-3UTR GCA 90 bp AACATTTCTCAGCAAATTTACAGTTGGGAAAGGCTTTGCAAGGTGAAATGGGATTCATCTCGGCGTGTCTaGATAAGGTGTCCTGAAAGG +
Preference number: 4 (lower is better)
Translates to: NISQQIYSWERLCKVKWDSSRRV*IRCPER
Trigger: CCTTTCAGGACACCTTATGCAGACACGCCGAGATGA...ATCCCATTTCACCTTGCAAAGCCTTTCCCAACTGTAAATTTGCTGAGAAATGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223451.2
CDS-3UTR CCA 90 bp ACTTTCAGAAAGGCACAGGACCTCGGTCCACTCTACCAAAGTAGCACTCAAAATTGTTTCTACCATTACTaGATCAATTTGCAGTCGGGA +
Preference number: 4 (lower is better)
Translates to: TFRKAQDLGPLYQSSTQNCFYHY*INLQSG
Trigger: TCCCGACTGCAAATTGATCCAGTAATGGTAGAAACA...ATTTTGAGTGCTACTTTGGTAGAGTGGACCGAGGTCCTGTGCCTTTCTGAAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp ATTTTTACATCGTCATTCCAACTATGCTTACCCTTTATGACCATGTCTCTGCTCATCTTCAGAGGGTGCTaGTTCCCTCAGAGGTTTCAC +
Preference number: 4 (lower is better)
Translates to: IFTSSFQLCLPFMTMSLLIFRGC*FPQRFH
Trigger: GTGAAACCTCTGAGGGAACCAGCACCCTCTGAAGAT...GAGCAGAGACATGGTCATAAAGGGTAAGCATAGTTGGAATGACGATGTAAAAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp GACCTCGGTCCACTCTACCAAAGTAGCACTCAAAATAAAGTCTGCATTATGCTTAGCTTGTTTAGAAGGTaGAAGAGAAGGTCTCCTCTC +
Preference number: 4 (lower is better)
Translates to: DLGPLYQSSTQNKVCIMLSLFRR*KRRSPL
Trigger: GAGAGGAGACCTTCTCTTCCACCTTCTAAACAAGCT...AAGCATAATGCAGACTTTATTTTGAGTGCTACTTTGGTAGAGTGGACCGAGGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp ACTTTCAGAAAGGCACAGGACCTCGGTCCACTCTACCAAAGTAGCACTCAAAATACTTGCAGGTTTATCTaGTTGTACAAGATCTCGTGT +
Preference number: 4 (lower is better)
Translates to: TFRKAQDLGPLYQSSTQNTCRFI*LYKISC
Trigger: ACACGAGATCTTGTACAACCAGATAAACCTGCAAGT...ATTTTGAGTGCTACTTTGGTAGAGTGGACCGAGGTCCTGTGCCTTTCTGAAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110105.10
CDS-3UTR TCA 90 bp TGGGAGCATTCCAAAGAACTGTCCATATATTTTTACATCGTCATTCCAACTATGTTGTTTGAAGGCACGTaGCTATCGAAGATGCTGGCG +
Preference number: 4 (lower is better)
Translates to: WEHSKELSIYFYIVIPTMLFEGT*LSKMLA
Trigger: CGCCAGCATCTTCGATAGTCACGTGCCTTCAAACAA...CATAGTTGGAATGACGATGTAAAAATATATGGACAGTTCTTTGGAATGCTCCCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR TCA 90 bp TTTTACATCGTCATTCCAACTATGCTTACCCTTTATGACCATGTCTCTGCTCACGAAACTGCTCTTGTTTaGAGGCACGTGACTATCGAA +
Preference number: 4 (lower is better)
Translates to: FYIVIPTMLTLYDHVSAHETALV*RHVTIE
Trigger: TTCGATAGTCACGTGCCTTCAAACAAGAGCAGTTTC...GTGAGCAGAGACATGGTCATAAAGGGTAAGCATAGTTGGAATGACGATGTAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR GCA 90 bp ACTTTCAGAAAGGCACAGGACCTCGGTCCACTCTACCAAAGTAGCACTCAAAATATTACTGGATCAATTTaGAGTCGGGATAACAATTGC +
Preference number: 4 (lower is better)
Translates to: TFRKAQDLGPLYQSSTQNITGSI*SRDNNC
Trigger: GCAATTGTTATCCCGACTGCAAATTGATCCAGTAAT...ATTTTGAGTGCTACTTTGGTAGAGTGGACCGAGGTCCTGTGCCTTTCTGAAAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR GCA 90 bp TGGGAGCATTCCAAAGAACTGTCCATATATTTTTACATCGTCATTCCAACTATGAGGCAGGCCAGTACTTaGAGCGCTCCAGAAGTTTTT +
Preference number: 4 (lower is better)
Translates to: WEHSKELSIYFYIVIPTMRQAST*SAPEVF
Trigger: AAAAACTTCTGGAGCGCTGCAAGTACTGGCCTGCCT...CATAGTTGGAATGACGATGTAAAAATATATGGACAGTTCTTTGGAATGCTCCCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR GCA 90 bp TATTTTTACATCGTCATTCCAACTATGCTTACCCTTTATGACCATGTCTCTGCTAGGCAGGCCAGTACTTaGAGCGCTCCAGAAGTTTTT +
Preference number: 4 (lower is better)
Translates to: YFYIVIPTMLTLYDHVSARQAST*SAPEVF
Trigger: AAAAACTTCTGGAGCGCTGCAAGTACTGGCCTGCCT...AGCAGAGACATGGTCATAAAGGGTAAGCATAGTTGGAATGACGATGTAAAAATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR GCA 90 bp TTTTACATCGTCATTCCAACTATGCTTACCCTTTATGACCATGTCTCTGCTCACTGGGGTGATAAAATGTaGAGTCAGGTCTCGTACACT +
Preference number: 4 (lower is better)
Translates to: FYIVIPTMLTLYDHVSAHWGDKM*SQVSYT
Trigger: AGTGTACGAGACCTGACTGCACATTTTATCACCCCA...GTGAGCAGAGACATGGTCATAAAGGGTAAGCATAGTTGGAATGACGATGTAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR GCA 90 bp TATTTTTACATCGTCATTCCAACTATGCTTACCCTTTATGACCATGTCTCTGCTCACATCTTCAGAGGGTaGTGGTTCCCTCAGAGGTTT +
Preference number: 4 (lower is better)
Translates to: YFYIVIPTMLTLYDHVSAHIFRG*WFPQRF
Trigger: AAACCTCTGAGGGAACCAGCACCCTCTGAAGATGTG...AGCAGAGACATGGTCATAAAGGGTAAGCATAGTTGGAATGACGATGTAAAAATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR GCA 90 bp TGGGAGCATTCCAAAGAACTGTCCATATATTTTTACATCGTCATTCCAACTATGCACATCTTCAGAGGGTaGTGGTTCCCTCAGAGGTTT +
Preference number: 4 (lower is better)
Translates to: WEHSKELSIYFYIVIPTMHIFRG*WFPQRF
Trigger: AAACCTCTGAGGGAACCAGCACCCTCTGAAGATGTG...CATAGTTGGAATGACGATGTAAAAATATATGGACAGTTCTTTGGAATGCTCCCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR GCA 90 bp ATTTTTACATCGTCATTCCAACTATGCTTACCCTTTATGACCATGTCTCTGCTCGTGAGTACCAGTGTCTaGATTTCTACTTGCAGGTGG +
Preference number: 4 (lower is better)
Translates to: IFTSSFQLCLPFMTMSLLVSTSV*ISTCRW
Trigger: CCACCTGCAAGTAGAAATGCAGACACTGGTACTCAC...GAGCAGAGACATGGTCATAAAGGGTAAGCATAGTTGGAATGACGATGTAAAAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp TGGGAGCATTCCAAAGAACTGTCCATATATTTTTACATCGTCATTCCAACTATGGCCCTGTTTTGCCCCTaGACCATTTCTGCTAGCAAT +
Preference number: 4 (lower is better)
Translates to: WEHSKELSIYFYIVIPTMALFCP*TISASN
Trigger: ATTGCTAGCAGAAATGGTCCAGGGGCAAAACAGGGC...CATAGTTGGAATGACGATGTAAAAATATATGGACAGTTCTTTGGAATGCTCCCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR TCA 90 bp TGGGAGCATTCCAAAGAACTGTCCATATATTTTTACATCGTCATTCCAACTATGCATGGAGCCATACGGTaGATCGAATTGTGTTGTTCC +
Preference number: 4 (lower is better)
Translates to: WEHSKELSIYFYIVIPTMHGAIR*IELCCS
Trigger: GGAACAACACAATTCGATTCACCGTATGGCTCCATG...CATAGTTGGAATGACGATGTAAAAATATATGGACAGTTCTTTGGAATGCTCCCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR TCA 90 bp ATTTTTACATCGTCATTCCAACTATGCTTACCCTTTATGACCATGTCTCTGCTCGGATTTCTGCTCCTGTaGACTTGTAGAAACTCTGGA +
Preference number: 4 (lower is better)
Translates to: IFTSSFQLCLPFMTMSLLGFLLL*TCRNSG
Trigger: TCCAGAGTTTCTACAAGTTCACAGGAGCAGAAATCC...GAGCAGAGACATGGTCATAAAGGGTAAGCATAGTTGGAATGACGATGTAAAAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR TCA 90 bp GACCTCGGTCCACTCTACCAAAGTAGCACTCAAAATAAAGTCTGCATTATGCTTAGCTCCATCATCATATaGATGTCTGACATTAGTGGA +
Preference number: 4 (lower is better)
Translates to: DLGPLYQSSTQNKVCIMLSSIII*MSDISG
Trigger: TCCACTAATGTCAGACATTCATATGATGATGGAGCT...AAGCATAATGCAGACTTTATTTTGAGTGCTACTTTGGTAGAGTGGACCGAGGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR TCA 90 bp ACAAACATTTCTCAGCAAATTTACAGTTGGGAAAGGCTTTGCAAGGTGAAATGGGCTAGCAATTCTTCTTaGGAAGTTCGAGTTCTGGGA +
Preference number: 4 (lower is better)
Translates to: TNISQQIYSWERLCKVKWASNSS*EVRVLG
Trigger: TCCCAGAACTCGAACTTCTCAAGAAGAATTGCTAGC...CCATTTCACCTTGCAAAGCCTTTCCCAACTGTAAATTTGCTGAGAAATGTTTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223451.2
CDS-3UTR GCA 90 bp TATTTTTACATCGTCATTCCAACTATGCTTACCCTTTATGACCATGTCTCTGCTGTGAGTACCAGTGTCTaGATTTCTACTTGCAGGTGG +
Preference number: 4 (lower is better)
Translates to: YFYIVIPTMLTLYDHVSAVSTSV*ISTCRW
Trigger: CCACCTGCAAGTAGAAATGCAGACACTGGTACTCAC...AGCAGAGACATGGTCATAAAGGGTAAGCATAGTTGGAATGACGATGTAAAAATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR GCA 90 bp ATTTTTACATCGTCATTCCAACTATGCTTACCCTTTATGACCATGTCTCTGCTCACAAGATCTCGTGTCTaGATAAGGTGTCCTGAAAGG +
Preference number: 4 (lower is better)
Translates to: IFTSSFQLCLPFMTMSLLTRSRV*IRCPER
Trigger: CCTTTCAGGACACCTTATGCAGACACGAGATCTTGT...GAGCAGAGACATGGTCATAAAGGGTAAGCATAGTTGGAATGACGATGTAAAAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp TTTTACATCGTCATTCCAACTATGCTTACCCTTTATGACCATGTCTCTGCTCACCAGCAAATTTACAGTTaGGAAAGGCTTTGCAAGGTG +
Preference number: 4 (lower is better)
Translates to: FYIVIPTMLTLYDHVSAHQQIYS*ERLCKV
Trigger: CACCTTGCAAAGCCTTTCCCAACTGTAAATTTGCTG...GTGAGCAGAGACATGGTCATAAAGGGTAAGCATAGTTGGAATGACGATGTAAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp TGGGAGCATTCCAAAGAACTGTCCATATATTTTTACATCGTCATTCCAACTATGGACTATCGAAGATGCTaGCGTCAGGAGACTTTAGAC +
Preference number: 4 (lower is better)
Translates to: WEHSKELSIYFYIVIPTMDYRRC*RQETLD
Trigger: GTCTAAAGTCTCCTGACGCCAGCATCTTCGATAGTC...CATAGTTGGAATGACGATGTAAAAATATATGGACAGTTCTTTGGAATGCTCCCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp ATTTTTACATCGTCATTCCAACTATGCTTACCCTTTATGACCATGTCTCTGCTCTTGACATTAGCCGGGTaGAAGCTCCATCATCATATG +
Preference number: 4 (lower is better)
Translates to: IFTSSFQLCLPFMTMSLLLTLAG*KLHHHM
Trigger: CATATGATGATGGAGCTTCCACCCGGCTAATGTCAA...GAGCAGAGACATGGTCATAAAGGGTAAGCATAGTTGGAATGACGATGTAAAAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp ACTTTCAGAAAGGCACAGGACCTCGGTCCACTCTACCAAAGTAGCACTCAAAATATCAATGAGATCATCTaGTTCTGGCTTGATATCAAT +
Preference number: 4 (lower is better)
Translates to: TFRKAQDLGPLYQSSTQNINEII*FWLDIN
Trigger: ATTGATATCAAGCCAGAACCAGATGATCTCATTGAT...ATTTTGAGTGCTACTTTGGTAGAGTGGACCGAGGTCCTGTGCCTTTCTGAAAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp AACATTTCTCAGCAAATTTACAGTTGGGAAAGGCTTTGCAAGGTGAAATGGGATAGCTTGTTTAGAAGGTaGAAGAGAAGGTCTCCTCTC +
Preference number: 4 (lower is better)
Translates to: NISQQIYSWERLCKVKWDSLFRR*KRRSPL
Trigger: GAGAGGAGACCTTCTCTTCCACCTTCTAAACAAGCT...ATCCCATTTCACCTTGCAAAGCCTTTCCCAACTGTAAATTTGCTGAGAAATGTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223451.2
CDS-3UTR CCA 90 bp ACAAACATTTCTCAGCAAATTTACAGTTGGGAAAGGCTTTGCAAGGTGAAATGGGATCTTGTGTCTGCATaGACCATGGATTCCATGTCA +
Preference number: 4 (lower is better)
Translates to: TNISQQIYSWERLCKVKWDLVSA*TMDSMS
Trigger: TGACATGGAATCCATGGTCCATGCAGACACAAGATC...CCATTTCACCTTGCAAAGCCTTTCCCAACTGTAAATTTGCTGAGAAATGTTTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223451.2
CDS-3UTR CCA 90 bp AACATTTCTCAGCAAATTTACAGTTGGGAAAGGCTTTGCAAGGTGAAATGGGATTTCATCCCCGAATCCTaGTTGGGTGTCACTACTATT +
Preference number: 4 (lower is better)
Translates to: NISQQIYSWERLCKVKWDFIPES*LGVTTI
Trigger: AATAGTAGTGACACCCAACCAGGATTCGGGGATGAA...ATCCCATTTCACCTTGCAAAGCCTTTCCCAACTGTAAATTTGCTGAGAAATGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223451.2
CDS-3UTR TCA 90 bp TGGGAGCATTCCAAAGAACTGTCCATATATTTTTACATCGTCATTCCAACTATGTCAGTCATCTCGGCTTaGCTCATCTCCATTGTTTCT +
Preference number: 4 (lower is better)
Translates to: WEHSKELSIYFYIVIPTMSVISA*LISIVS
Trigger: AGAAACAATGGAGATGAGTCAAGCCGAGATGACTGA...CATAGTTGGAATGACGATGTAAAAATATATGGACAGTTCTTTGGAATGCTCCCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110104.10
CDS-3UTR TCA 90 bp TATTTTTACATCGTCATTCCAACTATGCTTACCCTTTATGACCATGTCTCTGCTTCAGGTCTCGTACACTaGGTGTTAAACCTACAGTGT +
Preference number: 4 (lower is better)
Translates to: YFYIVIPTMLTLYDHVSASGLVH*VLNLQC
Trigger: ACACTGTAGGTTTAACACTCAGTGTACGAGACCTGA...AGCAGAGACATGGTCATAAAGGGTAAGCATAGTTGGAATGACGATGTAAAAATA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR TCA 90 bp TATTTTTACATCGTCATTCCAACTATGCTTACCCTTTATGACCATGTCTCTGCTGAAACTGCTCTTGTTTaGAGGCACGTGACTATCGAA +
Preference number: 4 (lower is better)
Translates to: YFYIVIPTMLTLYDHVSAETALV*RHVTIE
Trigger: TTCGATAGTCACGTGCCTTCAAACAAGAGCAGTTTC...AGCAGAGACATGGTCATAAAGGGTAAGCATAGTTGGAATGACGATGTAAAAATA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR TCA 90 bp TTTTACATCGTCATTCCAACTATGCTTACCCTTTATGACCATGTCTCTGCTCACTATCCAAGTTGTTTCTaGAGAAGGGGCTATAAGTGT +
Preference number: 4 (lower is better)
Translates to: FYIVIPTMLTLYDHVSAHYPSCF*RRGYKC
Trigger: ACACTTATAGCCCCTTCTTCAGAAACAACTTGGATA...GTGAGCAGAGACATGGTCATAAAGGGTAAGCATAGTTGGAATGACGATGTAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR GCA 90 bp ATTTTTACATCGTCATTCCAACTATGCTTACCCTTTATGACCATGTCTCTGCTCAGTTGGGAAAGGCTTTaGAAGGTGAAATGGGATGAT +
Preference number: 4 (lower is better)
Translates to: IFTSSFQLCLPFMTMSLLSWERL*KVKWDD
Trigger: ATCATCCCATTTCACCTTGCAAAGCCTTTCCCAACT...GAGCAGAGACATGGTCATAAAGGGTAAGCATAGTTGGAATGACGATGTAAAAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR GCA 90 bp GACCTCGGTCCACTCTACCAAAGTAGCACTCAAAATAAAGTCTGCATTATGCTTACATTAGTGGATTTCTaGTCCTGTGAACTTGTAGAA +
Preference number: 4 (lower is better)
Translates to: DLGPLYQSSTQNKVCIMLTLVDF*SCELVE
Trigger: TTCTACAAGTTCACAGGAGCAGAAATCCACTAATGT...AAGCATAATGCAGACTTTATTTTGAGTGCTACTTTGGTAGAGTGGACCGAGGTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp ATTTTTACATCGTCATTCCAACTATGCTTACCCTTTATGACCATGTCTCTGCTCAAACCTACAGTGTTTTaGGTGGTAGAAGGGACATTC +
Preference number: 4 (lower is better)
Translates to: IFTSSFQLCLPFMTMSLLKPTVF*VVEGTF
Trigger: GAATGTCCCTTCTACCACCCAAAACACTGTAGGTTT...GAGCAGAGACATGGTCATAAAGGGTAAGCATAGTTGGAATGACGATGTAAAAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp TGGGAGCATTCCAAAGAACTGTCCATATATTTTTACATCGTCATTCCAACTATGGATCTTGTGTCTGCATaGACCATGGATTCCATGTCA +
Preference number: 4 (lower is better)
Translates to: WEHSKELSIYFYIVIPTMDLVSA*TMDSMS
Trigger: TGACATGGAATCCATGGTCCATGCAGACACAAGATC...CATAGTTGGAATGACGATGTAAAAATATATGGACAGTTCTTTGGAATGCTCCCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110105.10
CDS-3UTR TCA 90 bp ATTTTTACATCGTCATTCCAACTATGCTTACCCTTTATGACCATGTCTCTGCTCTATCCAAGTTGTTTCTaGAGAAGGGGCTATAAGTGT +
Preference number: 4 (lower is better)
Translates to: IFTSSFQLCLPFMTMSLLYPSCF*RRGYKC
Trigger: ACACTTATAGCCCCTTCTTCAGAAACAACTTGGATA...GAGCAGAGACATGGTCATAAAGGGTAAGCATAGTTGGAATGACGATGTAAAAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR TCA 90 bp ATTTTTACATCGTCATTCCAACTATGCTTACCCTTTATGACCATGTCTCTGCTCCTTCTTCAGAATAAATaGTCTTGTGTCTGCATGGAC +
Preference number: 4 (lower is better)
Translates to: IFTSSFQLCLPFMTMSLLLLQNK*SCVCMD
Trigger: GTCCATGCAGACACAAGATCATTTATTCTGAAGAAG...GAGCAGAGACATGGTCATAAAGGGTAAGCATAGTTGGAATGACGATGTAAAAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110105.10
CDS-3UTR TCA 90 bp ACAAACATTTCTCAGCAAATTTACAGTTGGGAAAGGCTTTGCAAGGTGAAATGGCTTCTTCAGAATAAATaGTCTTGTGTCTGCATGGAC +
Preference number: 4 (lower is better)
Translates to: TNISQQIYSWERLCKVKWLLQNK*SCVCMD
Trigger: GTCCATGCAGACACAAGATCATTTATTCTGAAGAAG...CCATTTCACCTTGCAAAGCCTTTCCCAACTGTAAATTTGCTGAGAAATGTTTGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223451.2
CDS-3UTR CCA 90 bp AACATTTCTCAGCAAATTTACAGTTGGGAAAGGCTTTGCAAGGTGAAATGGGATTGTTTCTACCATTACTaGATCAATTTGCAGTCGGGA +
Preference number: 4 (lower is better)
Translates to: NISQQIYSWERLCKVKWDCFYHY*INLQSG
Trigger: TCCCGACTGCAAATTGATCCAGTAATGGTAGAAACA...ATCCCATTTCACCTTGCAAAGCCTTTCCCAACTGTAAATTTGCTGAGAAATGTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223451.2
CDS-3UTR CCA 90 bp ATTTTTACATCGTCATTCCAACTATGCTTACCCTTTATGACCATGTCTCTGCTCCTTTGCAAGGTGAAATaGGATGATGGTATACACACT +
Preference number: 4 (lower is better)
Translates to: IFTSSFQLCLPFMTMSLLLCKVK*DDGIHT
Trigger: AGTGTGTATACCATCATCCCATTTCACCTTGCAAAG...GAGCAGAGACATGGTCATAAAGGGTAAGCATAGTTGGAATGACGATGTAAAAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp TATTTTTACATCGTCATTCCAACTATGCTTACCCTTTATGACCATGTCTCTGCTAAACCTACAGTGTTTTaGGTGGTAGAAGGGACATTC +
Preference number: 4 (lower is better)
Translates to: YFYIVIPTMLTLYDHVSAKPTVF*VVEGTF
Trigger: GAATGTCCCTTCTACCACCCAAAACACTGTAGGTTT...AGCAGAGACATGGTCATAAAGGGTAAGCATAGTTGGAATGACGATGTAAAAATA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CCA 90 bp ACAAACATTTCTCAGCAAATTTACAGTTGGGAAAGGCTTTGCAAGGTGAAATGGTGTCTGCATGGACCATaGATTCCATGTCATAGTAAT +
Preference number: 4 (lower is better)
Translates to: TNISQQIYSWERLCKVKWCLHGP*IPCHSN
Trigger: ATTACTATGACATGGAATCCATGGTCCATGCAGACA...CCATTTCACCTTGCAAAGCCTTTCCCAACTGTAAATTTGCTGAGAAATGTTTGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223451.2
CDS-3UTR GCA 90 bp ACAAACATTTCTCAGCAAATTTACAGTTGGGAAAGGCTTTGCAAGGTGAAATGGATTACTGGATCAATTTaGAGTCGGGATAACAATTGC +
Preference number: 4 (lower is better)
Translates to: TNISQQIYSWERLCKVKWITGSI*SRDNNC
Trigger: GCAATTGTTATCCCGACTGCAAATTGATCCAGTAAT...CCATTTCACCTTGCAAAGCCTTTCCCAACTGTAAATTTGCTGAGAAATGTTTGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223451.2
CDS-3UTR CCA 90 bp ACAAACATTTCTCAGCAAATTTACAGTTGGGAAAGGCTTTGCAAGGTGAAATGGAAGTGTCTGTTTCTGTaGAACTGCAGAATAGTTAGT +
Preference number: 4 (lower is better)
Translates to: TNISQQIYSWERLCKVKWKCLFL*NCRIVS
Trigger: ACTAACTATTCTGCAGTTCCACAGAAACAGACACTT...CCATTTCACCTTGCAAAGCCTTTCCCAACTGTAAATTTGCTGAGAAATGTTTGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223451.2
CDS-3UTR GCA 90 bp AACATTTCTCAGCAAATTTACAGTTGGGAAAGGCTTTGCAAGGTGAAATGGGATTGTATTATCTCCTTTTaGTTCCTCTTCTTTAACAGG +
Preference number: 4 (lower is better)
Translates to: NISQQIYSWERLCKVKWDCIISF*FLFFNR
Trigger: CCTGTTAAAGAAGAGGAAGCAAAAGGAGATAATACA...ATCCCATTTCACCTTGCAAAGCCTTTCCCAACTGTAAATTTGCTGAGAAATGTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223451.2
CDS-3UTR CCA 90 bp TATTTTTACATCGTCATTCCAACTATGCTTACCCTTTATGACCATGTCTCTGCTAAGTGTCTGTTTCTGTaGAACTGCAGAATAGTTAGT +
Preference number: 4 (lower is better)
Translates to: YFYIVIPTMLTLYDHVSAKCLFL*NCRIVS
Trigger: ACTAACTATTCTGCAGTTCCACAGAAACAGACACTT...AGCAGAGACATGGTCATAAAGGGTAAGCATAGTTGGAATGACGATGTAAAAATA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS GCA 90 bp CCGGGCCCACCCGCCCCGTTACTCCTGGCAACCGCCTGCCCGCCATaGCCAGCGCCCGCCGACGCGGGCCTCACCCGGATCTTGCGGCTG +
Preference number: 5 (lower is better)
Translates to: PGPPAPLLLATACPP*PAPADAGLTRILRL
Trigger: CAGCCGCAAGATCCGGGTGAGGCCCGCGTCGGCGGGCGCTGGGCATGGCGGGCAGGCGGTTGCCAGGAGTAACGGGGCGGGTGGGCCCGG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223083.2
CDS-3UTR CAA 90 bp GCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACACTGCATATGGCACTCCGGATCTaGCGGCTGATCTCGGTGCCG +
Preference number: 5 (lower is better)
Translates to: ASVSKPGHCYHAGLQTLHMALRI*RLISVP
Trigger: CGGCACCGAGATCAGCCGCAAGATCCGGAGTGCCAT...ATGCAGTGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CAA 90 bp CCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACACTGCATTATGGCACTCCGGATCTaGCGGCTGATCTCGGTGCCG +
Preference number: 5 (lower is better)
Translates to: PQFQSLATVTTLGYRHCIMALRI*RLISVP
Trigger: CGGCACCGAGATCAGCCGCAAGATCCGGAGTGCCAT...AATGCAGTGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CAA 90 bp AAAGCTGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACAATGGCACTCCGGATCTaGCGGCTGATCTCGGTGCCG +
Preference number: 5 (lower is better)
Translates to: KAASVSKPGHCYHAGLQTMALRI*RLISVP
Trigger: CGGCACCGAGATCAGCCGCAAGATCCGGAGTGCCAT...TGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCAGCTTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CAA 90 bp GCTCTGAGGACACTGGCCTTCCCACAGCACTACAGCCCTAAGCTGCAAGTACCAGGATACCTGGCTGCTTaGTACATCCAGCTGCTTGGC +
Preference number: 5 (lower is better)
Translates to: ALRTLAFPQHYSPKLQVPGYLAA*YIQLLG
Trigger: GCCAAGCAGCTGGATGTACAAAGCAGCCAGGTATCC...TGGTACTTGCAGCTTAGGGCTGTAGTGCTGTGGGAAGGCCAGTGTCCTCAGAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS TCA 90 bp CAAGGGGAGGGACGGCAGCTTCGTGCCTTCTCTCATCTCCCCGACTaGAACTGCTCTTGTTTGAAGGCACGTGACTATCGAAGATGCTGG +
Preference number: 5 (lower is better)
Translates to: QGEGRQLRAFSHLPD*NCSCLKARDYRRCW
Trigger: CCAGCATCTTCGATAGTCACGTGCCTTCAAACAAGAGCAGTTTCAGTCGGGGAGATGAGAGAAGGCACGAAGCTGCCGTCCCTCCCCTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
ENSMUST00000223083.2
CDS CCA 90 bp TGCCACACTCAGGTCAGTCATCTCGGCGTTGGAAAAGCTACCATCTaGGTCCTCAAGCTGCCTGCTCAGCAAATGCAACTGCTGTGGGTG +
Preference number: 5 (lower is better)
Translates to: CHTQVSHLGVGKATI*VLKLPAQQMQLLWV
Trigger: CACCCACAGCAGTTGCATTTGCTGAGCAGGCAGCTTGAGGACCCAGATGGTAGCTTTTCCAACGCCGAGATGACTGACCTGAGTGTGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110105.10
CDS-3UTR CAA 90 bp CCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACACTGCATTTCTGGGGGCCCTGTTTaGCCCCTGGACCATTTCTGC +
Preference number: 5 (lower is better)
Translates to: PQFQSLATVTTLGYRHCISGGPV*PLDHFC
Trigger: GCAGAAATGGTCCAGGGGCAAAACAGGGCCCCCAGA...AATGCAGTGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CAA 90 bp AAAGCTGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACATCTGGGGGCCCTGTTTaGCCCCTGGACCATTTCTGC +
Preference number: 5 (lower is better)
Translates to: KAASVSKPGHCYHAGLQTSGGPV*PLDHFC
Trigger: GCAGAAATGGTCCAGGGGCAAAACAGGGCCCCCAGA...TGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCAGCTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CAA 90 bp GCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACACTGCATCAGGCAGGCCAGTACTaGCAGCGCTCCAGAAGTTTT +
Preference number: 5 (lower is better)
Translates to: ASVSKPGHCYHAGLQTLHQAGQY*QRSRSF
Trigger: AAAACTTCTGGAGCGCTGCAAGTACTGGCCTGCCTG...ATGCAGTGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CAA 90 bp GGACACTGGCCTTCCCACAGCACTACAGCCCTAAGCTGCAAGTACCATTACCAAGGATACCTGGCTGCTTaGTACATCCAGCTGCTTGGC +
Preference number: 5 (lower is better)
Translates to: GHWPSHSTTALSCKYHYQGYLAA*YIQLLG
Trigger: GCCAAGCAGCTGGATGTACAAAGCAGCCAGGTATCC...TTGGTAATGGTACTTGCAGCTTAGGGCTGTAGTGCTGTGGGAAGGCCAGTGTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CAA 90 bp TGTTCCAAAGCTGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTAGTCTCCTCTCAGGCTTaGCTGGTACTGACACGCTGC +
Preference number: 5 (lower is better)
Translates to: CSKAASVSKPGHCYHAGLVSSQA*LVLTRC
Trigger: GCAGCGTGTCAGTACCAGCAAAGCCTGAGAGGAGAC...TAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCAGCTTTGGAACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CAA 90 bp GCTCTGAGGACACTGGCCTTCCCACAGCACTACAGCCCTAAGCTGCAAGTACCAATCCCCGAATCCTGGTaGGGTGTCACTACTATTTCC +
Preference number: 5 (lower is better)
Translates to: ALRTLAFPQHYSPKLQVPIPESW*GVTTIS
Trigger: GGAAATAGTAGTGACACCCAACCAGGATTCGGGGAT...TGGTACTTGCAGCTTAGGGCTGTAGTGCTGTGGGAAGGCCAGTGTCCTCAGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110105.10
CDS GCA 90 bp TCAGGTCTAGAACTAGAAACAGCAAGGGGAGGGACGGCAGCTTCGTaGCTTCTCTCATCTCCCCGACTGAAACTGCTCTTGTTTGAAGGC +
Preference number: 5 (lower is better)
Translates to: SGLELETARGGTAAS*LLSSPRLKLLLFEG
Trigger: GCCTTCAAACAAGAGCAGTTTCAGTCGGGGAGATGAGAGAAGGCACGAAGCTGCCGTCCCTCCCCTTGCTGTTTCTAGTTCTAGACCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
ENSMUST00000223083.2
CDS-3UTR CAA 90 bp CCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACACTGCATTCAGGCAGGCCAGTACTaGCAGCGCTCCAGAAGTTTT +
Preference number: 5 (lower is better)
Translates to: PQFQSLATVTTLGYRHCIQAGQY*QRSRSF
Trigger: AAAACTTCTGGAGCGCTGCAAGTACTGGCCTGCCTG...AATGCAGTGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS TCA 90 bp AGCAGGGAAGTAACGGCAGAGCTGGCCATTAGAAGACGGTGCTGGTaGCGACACTGGTTTTGGAGTCAGTATCGAGGCTCTTCTACTCAT +
Preference number: 5 (lower is better)
Translates to: SREVTAELAIRRRCW*RHWFWSQYRGSSTH
Trigger: ATGAGTAGAAGAGCCTCGATACTGACTCCAAAACCAGTGTCGTCACCAGCACCGTCTTCTAATGGCCAGCTCTGCCGTTACTTCCCTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000021399.9
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
ENSMUST00000220660.2
CDS GCA 90 bp ATACCTGGCTGCTTTGTACATCCAGCTGCTTGGCAGCGTGAGCACTaGTTTGCTGCGGATGAAGTTGCAGCCTGTTTAAGTGAGTACCAG +
Preference number: 5 (lower is better)
Translates to: IPGCFVHPAAWQREH*FAADEVAACLSEYQ
Trigger: CTGGTACTCACTTAAACAGGCTGCAACTTCATCCGCAGCAAAGCAGTGCTCACGCTGCCAAGCAGCTGGATGTACAAAGCAGCCAGGTAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS CCA 90 bp GTTTCTGAAGAAGGGGCTATAAGTGTCTTCTACGCTGCTAAGCACTaGTGGCTCACACAACCGTCCTGCTTCGGATACCTGGCTGCTTTG +
Preference number: 5 (lower is better)
Translates to: VSEEGAISVFYAAKH*WLTQPSCFGYLAAL
Trigger: CAAAGCAGCCAGGTATCCGAAGCAGGACGGTTGTGTGAGCCACCAGTGCTTAGCAGCGTAGAAGACACTTATAGCCCCTTCTTCAGAAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS CCA 90 bp CCTGAAAGGACCCGAAGGGCATCTGCAGTCTTCATCCCCGAATCCTaGTTGGGTGTCACTACTATTTCCTCAGACAGCTTTGGCTTCTTC +
Preference number: 5 (lower is better)
Translates to: PERTRRASAVFIPES*LGVTTISSDSFGFF
Trigger: GAAGAAGCCAAAGCTGTCTGAGGAAATAGTAGTGACACCCAACCAGGATTCGGGGATGAAGACTGCAGATGCCCTTCGGGTCCTTTCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110105.10
ENSMUST00000223451.2
CDS-3UTR CAA 90 bp CCAAAGCTGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGAAGACCTCTGAGTCCCTaGTTTGAGGCTGAAGTTTGG +
Preference number: 5 (lower is better)
Translates to: PKLPQFQSLATVTTLGYRRPLSP*FEAEVW
Trigger: CCAAACTTCAGCCTCAAACAAGGGACTCAGAGGTCT...TCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCAGCTTTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110105.10
CDS-3UTR CAA 90 bp GCTCTGAGGACACTGGCCTTCCCACAGCACTACAGCCCTAAGCTGCAAGTACCATCAGCAAATTTACAGTaGGGAAAGGCTTTGCAAGGT +
Preference number: 5 (lower is better)
Translates to: ALRTLAFPQHYSPKLQVPSANLQ*GKALQG
Trigger: ACCTTGCAAAGCCTTTCCCAACTGTAAATTTGCTGA...TGGTACTTGCAGCTTAGGGCTGTAGTGCTGTGGGAAGGCCAGTGTCCTCAGAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CAA 90 bp AGGTCGAATCCATTTCAAGGCGTGTCTTGGTGGCACAGTAATGGTGGGGTGATAGTGACGACACTGGTTTaGGAGTCAGTATCGAGGCTC +
Preference number: 5 (lower is better)
Translates to: RSNPFQGVSWWHSNGGVIVTTLV*ESVSRL
Trigger: GAGCCTCGATACTGACTCCAAAACCAGTGTCGTCAC...TATCACCCCACCATTACTGTGCCACCAAGACACGCCTTGAAATGGATTCGACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220660.2
CDS-3UTR CAA 90 bp ACTTTCAGAAAGGCACAGGACCTCGGTCCACTCTACCAAAGTAGCACTCAAAATGTCTCCTCTCAGGCTTaGCTGGTACTGACACGCTGC +
Preference number: 5 (lower is better)
Translates to: TFRKAQDLGPLYQSSTQNVSSQA*LVLTRC
Trigger: GCAGCGTGTCAGTACCAGCAAAGCCTGAGAGGAGAC...ATTTTGAGTGCTACTTTGGTAGAGTGGACCGAGGTCCTGTGCCTTTCTGAAAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS GCA 90 bp CTTACAAGCAGGGAAGTAACGGCAGAGCTGGCCATTAGAAGACGGTaGTGGTTTTGGAGTCAGTATCGAGGCTCTTCTACTCATGTGAGT +
Preference number: 5 (lower is better)
Translates to: LTSREVTAELAIRRR*WFWSQYRGSSTHVS
Trigger: ACTCACATGAGTAGAAGAGCCTCGATACTGACTCCAAAACCAGCACCGTCTTCTAATGGCCAGCTCTGCCGTTACTTCCCTGCTTGTAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221532.2
CDS CCA 90 bp AAAGGACCCGAAGGGCATCTGCAGTCTTCATCCCCGAATCCTGGTTaGGTGTCACTACTATTTCCTCAGACAGCTTTGGCTTCTTCAGAA +
Preference number: 5 (lower is better)
Translates to: KGPEGHLQSSSPNPG*VSLLFPQTALASSE
Trigger: TTCTGAAGAAGCCAAAGCTGTCTGAGGAAATAGTAGTGACACCCAACCAGGATTCGGGGATGAAGACTGCAGATGCCCTTCGGGTCCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110105.10
ENSMUST00000223451.2
CDS-3UTR CAA 90 bp GCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACACTGCATGTGAATCGAATTGTGTaGTTCCCTAGAAACAGGGAC +
Preference number: 5 (lower is better)
Translates to: ASVSKPGHCYHAGLQTLHVNRIV*FPRNRD
Trigger: GTCCCTGTTTCTAGGGAACAACACAATTCGATTCAC...ATGCAGTGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CAA 90 bp GCTCTGAGGACACTGGCCTTCCCACAGCACTACAGCCCTAAGCTGCAAGTACCATTCTCCTGCACAAAATaGAGGTCTTCATCAATGAGA +
Preference number: 5 (lower is better)
Translates to: ALRTLAFPQHYSPKLQVPFSCTK*RSSSMR
Trigger: TCTCATTGATGAAGACCTCAATTTTGTGCAGGAGAA...TGGTACTTGCAGCTTAGGGCTGTAGTGCTGTGGGAAGGCCAGTGTCCTCAGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CAA 90 bp CCAAAGCTGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGATCAGCAAATTTACAGTaGGGAAAGGCTTTGCAAGGT +
Preference number: 5 (lower is better)
Translates to: PKLPQFQSLATVTTLGYRSANLQ*GKALQG
Trigger: ACCTTGCAAAGCCTTTCCCAACTGTAAATTTGCTGA...TCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCAGCTTTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CAA 90 bp CCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACACTGCATTGTGAATCGAATTGTGTaGTTCCCTAGAAACAGGGAC +
Preference number: 5 (lower is better)
Translates to: PQFQSLATVTTLGYRHCIVNRIV*FPRNRD
Trigger: GTCCCTGTTTCTAGGGAACAACACAATTCGATTCAC...AATGCAGTGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CAA 90 bp TGTTCCAAAGCTGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTAGTGAATCGAATTGTGTaGTTCCCTAGAAACAGGGAC +
Preference number: 5 (lower is better)
Translates to: CSKAASVSKPGHCYHAGLVNRIV*FPRNRD
Trigger: GTCCCTGTTTCTAGGGAACAACACAATTCGATTCAC...TAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCAGCTTTGGAACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CAA 90 bp TCTCAGCAAATTTACAGTTGGGAAAGGCTTTGCAAGGTGAAATGGGATGATGGTGTCTCCTCTCAGGCTTaGCTGGTACTGACACGCTGC +
Preference number: 5 (lower is better)
Translates to: SQQIYSWERLCKVKWDDGVSSQA*LVLTRC
Trigger: GCAGCGTGTCAGTACCAGCAAAGCCTGAGAGGAGAC...ACCATCATCCCATTTCACCTTGCAAAGCCTTTCCCAACTGTAAATTTGCTGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223451.2
CDS-3UTR CAA 90 bp CAGCAAATTTACAGTTGGGAAAGGCTTTGCAAGGTGAAATGGGATGATGGTATATCTGGGGGCCCTGTTTaGCCCCTGGACCATTTCTGC +
Preference number: 5 (lower is better)
Translates to: QQIYSWERLCKVKWDDGISGGPV*PLDHFC
Trigger: GCAGAAATGGTCCAGGGGCAAAACAGGGCCCCCAGA...TATACCATCATCCCATTTCACCTTGCAAAGCCTTTCCCAACTGTAAATTTGCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000223451.2
CDS-3UTR CAA 90 bp GCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACACTGCATGTCAGTCATCTCGGCTaGACTTTTTCCTGTATTATC +
Preference number: 5 (lower is better)
Translates to: ASVSKPGHCYHAGLQTLHVSHLG*TFSCII
Trigger: GATAATACAGGAAAAAGTCAAGCCGAGATGACTGAC...ATGCAGTGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057000.17
CDS-3UTR CAA 90 bp AAAGCTGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACATGCAGGTTTATCTGGTaGTACAAGATCTCGTGTCTG +
Preference number: 5 (lower is better)
Translates to: KAASVSKPGHCYHAGLQTCRFIW*YKISCL
Trigger: CAGACACGAGATCTTGTACAACCAGATAAACCTGCA...TGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCAGCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110105.10
CDS-3UTR CAA 90 bp TGTTCCAAAGCTGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTATCAGCAAATTTACAGTaGGGAAAGGCTTTGCAAGGT +
Preference number: 5 (lower is better)
Translates to: CSKAASVSKPGHCYHAGLSANLQ*GKALQG
Trigger: ACCTTGCAAAGCCTTTCCCAACTGTAAATTTGCTGA...TAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCAGCTTTGGAACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CAA 90 bp GGACACTGGCCTTCCCACAGCACTACAGCCCTAAGCTGCAAGTACCATTACCAATTCTCCTGCACAAAATaGAGGTCTTCATCAATGAGA +
Preference number: 5 (lower is better)
Translates to: GHWPSHSTTALSCKYHYQFSCTK*RSSSMR
Trigger: TCTCATTGATGAAGACCTCAATTTTGTGCAGGAGAA...TTGGTAATGGTACTTGCAGCTTAGGGCTGTAGTGCTGTGGGAAGGCCAGTGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CAA 90 bp CCAAAGCTGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGATGTCTGCATTTCTACTaGCAGGTGGTCGATAAATTT +
Preference number: 5 (lower is better)
Translates to: PKLPQFQSLATVTTLGYRCLHFY*QVVDKF
Trigger: AAATTTATCGACCACCTGCAAGTAGAAATGCAGACA...TCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCAGCTTTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CAA 90 bp CCAAAGCTGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACTCATTTTATCCAAGTaGTTTCTGAAGAAGGGGCTA +
Preference number: 5 (lower is better)
Translates to: PKLPQFQSLATVTTLGYRLILSK*FLKKGL
Trigger: TAGCCCCTTCTTCAGAAACAACTTGGATAAAATGAG...TCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCAGCTTTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CAA 90 bp AAAGCTGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACACTTTGTTACAGACTCTaGAGCTTCAGAGATAGCCTT +
Preference number: 5 (lower is better)
Translates to: KAASVSKPGHCYHAGLQTLCYRL*SFRDSL
Trigger: AAGGCTATCTCTGAAGCTCAAGAGTCTGTAACAAAG...TGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCAGCTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CAA 90 bp CCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACACTGCATTCTTTGTTACAGACTCTaGAGCTTCAGAGATAGCCTT +
Preference number: 5 (lower is better)
Translates to: PQFQSLATVTTLGYRHCILCYRL*SFRDSL
Trigger: AAGGCTATCTCTGAAGCTCAAGAGTCTGTAACAAAG...AATGCAGTGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CAA 90 bp ATTTTTACATCGTCATTCCAACTATGCTTACCCTTTATGACCATGTCTCTGCTCTCTGGGGGCCCTGTTTaGCCCCTGGACCATTTCTGC +
Preference number: 5 (lower is better)
Translates to: IFTSSFQLCLPFMTMSLLSGGPV*PLDHFC
Trigger: GCAGAAATGGTCCAGGGGCAAAACAGGGCCCCCAGA...GAGCAGAGACATGGTCATAAAGGGTAAGCATAGTTGGAATGACGATGTAAAAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CAA 90 bp GACCTCGGTCCACTCTACCAAAGTAGCACTCAAAATAAAGTCTGCATTATGCTTGTGACGACACTGGTTTaGGAGTCAGTATCGAGGCTC +
Preference number: 5 (lower is better)
Translates to: DLGPLYQSSTQNKVCIMLVTTLV*ESVSRL
Trigger: GAGCCTCGATACTGACTCCAAAACCAGTGTCGTCAC...AAGCATAATGCAGACTTTATTTTGAGTGCTACTTTGGTAGAGTGGACCGAGGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CAA 90 bp AAAGCTGCCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACATGTCTGCATTTCTACTaGCAGGTGGTCGATAAATTT +
Preference number: 5 (lower is better)
Translates to: KAASVSKPGHCYHAGLQTCLHFY*QVVDKF
Trigger: AAATTTATCGACCACCTGCAAGTAGAAATGCAGACA...TGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGGCAGCTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CAA 90 bp TTTTACATCGTCATTCCAACTATGCTTACCCTTTATGACCATGTCTCTGCTCACGGATACCTGGCTGCTTaGTACATCCAGCTGCTTGGC +
Preference number: 5 (lower is better)
Translates to: FYIVIPTMLTLYDHVSAHGYLAA*YIQLLG
Trigger: GCCAAGCAGCTGGATGTACAAAGCAGCCAGGTATCC...GTGAGCAGAGACATGGTCATAAAGGGTAAGCATAGTTGGAATGACGATGTAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CAA 90 bp CCTCAGTTTCAAAGCCTGGCCACTGTTACCACGCTGGGTTACAGACACTGCATTCCTCTGTTGAGTTCCTaGACTTTTTCCTGTATTATC +
Preference number: 5 (lower is better)
Translates to: PQFQSLATVTTLGYRHCIPLLSS*TFSCII
Trigger: GATAATACAGGAAAAAGTCAAGGAACTCAACAGAGG...AATGCAGTGTCTGTAACCCAGCGTGGTAACAGTGGCCAGGCTTTGAAACTGAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS CCA 90 bp CCTGGACCATTTCTGCTAGCAATTCTTCTTGAGAAGTTCGAGTTCTaGGAGCAACTGGAAGTGTCTGTTTCTGTGGAACTGCAGAATAGT +
Preference number: 5 (lower is better)
Translates to: PGPFLLAILLEKFEF*EQLEVSVSVELQNS
Trigger: ACTATTCTGCAGTTCCACAGAAACAGACACTTCCAGTTGCTCCCAGAACTCGAACTTCTCAAGAAGAATTGCTAGCAGAAATGGTCCAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
ENSMUST00000221532.2
ENSMUST00000223451.2
CDS-3UTR CAA 90 bp TTTTACATCGTCATTCCAACTATGCTTACCCTTTATGACCATGTCTCTGCTCACGTGACGACACTGGTTTaGGAGTCAGTATCGAGGCTC +
Preference number: 5 (lower is better)
Translates to: FYIVIPTMLTLYDHVSAHVTTLV*ESVSRL
Trigger: GAGCCTCGATACTGACTCCAAAACCAGTGTCGTCAC...GTGAGCAGAGACATGGTCATAAAGGGTAAGCATAGTTGGAATGACGATGTAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CAA 90 bp CAGCAAATTTACAGTTGGGAAAGGCTTTGCAAGGTGAAATGGGATGATGGTATAATCCCCGAATCCTGGTaGGGTGTCACTACTATTTCC +
Preference number: 5 (lower is better)
Translates to: QQIYSWERLCKVKWDDGIIPESW*GVTTIS
Trigger: GGAAATAGTAGTGACACCCAACCAGGATTCGGGGAT...TATACCATCATCCCATTTCACCTTGCAAAGCCTTTCCCAACTGTAAATTTGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223451.2
CDS-3UTR CAA 90 bp TATTTTTACATCGTCATTCCAACTATGCTTACCCTTTATGACCATGTCTCTGCTGTGACGACACTGGTTTaGGAGTCAGTATCGAGGCTC +
Preference number: 5 (lower is better)
Translates to: YFYIVIPTMLTLYDHVSAVTTLV*ESVSRL
Trigger: GAGCCTCGATACTGACTCCAAAACCAGTGTCGTCAC...AGCAGAGACATGGTCATAAAGGGTAAGCATAGTTGGAATGACGATGTAAAAATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CAA 90 bp ACTTTCAGAAAGGCACAGGACCTCGGTCCACTCTACCAAAGTAGCACTCAAAATTGTCTGCATTTCTACTaGCAGGTGGTCGATAAATTT +
Preference number: 5 (lower is better)
Translates to: TFRKAQDLGPLYQSSTQNCLHFY*QVVDKF
Trigger: AAATTTATCGACCACCTGCAAGTAGAAATGCAGACA...ATTTTGAGTGCTACTTTGGTAGAGTGGACCGAGGTCCTGTGCCTTTCTGAAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS TCA 90 bp ACCATTACTGGATCAATTTGCAGTCGGGATAACAATTGCCTCTGTTaGGTTCCTTTCTCAACCTCTGTTAGGAAGCCAATTAGGTTTGCA +
Preference number: 5 (lower is better)
Translates to: TITGSICSRDNNCLC*VPFSTSVRKPIRFA
Trigger: TGCAAACCTAATTGGCTTCCTAACAGAGGTTGAGAAAGGAACTCAACAGAGGCAATTGTTATCCCGACTGCAAATTGATCCAGTAATGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021399.9
CDS-3UTR CAA 90 bp GACCTCGGTCCACTCTACCAAAGTAGCACTCAAAATAAAGTCTGCATTATGCTTCTTGACTCATCTCCATaGTTTCTACCATTACTGGAT +
Preference number: 5 (lower is better)
Translates to: DLGPLYQSSTQNKVCIMLLDSSP*FLPLLD
Trigger: ATCCAGTAATGGTAGAAACAATGGAGATGAGTCAAG...AAGCATAATGCAGACTTTATTTTGAGTGCTACTTTGGTAGAGTGGACCGAGGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CAA 90 bp GACCTCGGTCCACTCTACCAAAGTAGCACTCAAAATAAAGTCTGCATTATGCTTCTCATTTTATCCAAGTaGTTTCTGAAGAAGGGGCTA +
Preference number: 5 (lower is better)
Translates to: DLGPLYQSSTQNKVCIMLLILSK*FLKKGL
Trigger: TAGCCCCTTCTTCAGAAACAACTTGGATAAAATGAG...AAGCATAATGCAGACTTTATTTTGAGTGCTACTTTGGTAGAGTGGACCGAGGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CAA 90 bp CAGCAAATTTACAGTTGGGAAAGGCTTTGCAAGGTGAAATGGGATGATGGTATACTTTGTTACAGACTCTaGAGCTTCAGAGATAGCCTT +
Preference number: 5 (lower is better)
Translates to: QQIYSWERLCKVKWDDGILCYRL*SFRDSL
Trigger: AAGGCTATCTCTGAAGCTCAAGAGTCTGTAACAAAG...TATACCATCATCCCATTTCACCTTGCAAAGCCTTTCCCAACTGTAAATTTGCTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223451.2
CDS TCA 90 bp TGTCACTACTATTTCCTCAGACAGCTTTGGCTTCTTCAGAATAAATaGTCTTGTGTCTGCATGGACCATGGATTCCATGTCATAGTAATC +
Preference number: 5 (lower is better)
Translates to: CHYYFLRQLWLLQNK*SCVCMDHGFHVIVI
Trigger: GATTACTATGACATGGAATCCATGGTCCATGCAGACACAAGATCATTTATTCTGAAGAAGCCAAAGCTGTCTGAGGAAATAGTAGTGACA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110105.10
ENSMUST00000223451.2
CDS-3UTR CAA 90 bp TTTTACATCGTCATTCCAACTATGCTTACCCTTTATGACCATGTCTCTGCTCACCTTGACTCATCTCCATaGTTTCTACCATTACTGGAT +
Preference number: 5 (lower is better)
Translates to: FYIVIPTMLTLYDHVSAHLDSSP*FLPLLD
Trigger: ATCCAGTAATGGTAGAAACAATGGAGATGAGTCAAG...GTGAGCAGAGACATGGTCATAAAGGGTAAGCATAGTTGGAATGACGATGTAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CAA 90 bp CAGCAAATTTACAGTTGGGAAAGGCTTTGCAAGGTGAAATGGGATGATGGTATACTTGACTCATCTCCATaGTTTCTACCATTACTGGAT +
Preference number: 5 (lower is better)
Translates to: QQIYSWERLCKVKWDDGILDSSP*FLPLLD
Trigger: ATCCAGTAATGGTAGAAACAATGGAGATGAGTCAAG...TATACCATCATCCCATTTCACCTTGCAAAGCCTTTCCCAACTGTAAATTTGCTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223451.2
CDS-3UTR CAA 90 bp ATTTTTACATCGTCATTCCAACTATGCTTACCCTTTATGACCATGTCTCTGCTCCTCATTTTATCCAAGTaGTTTCTGAAGAAGGGGCTA +
Preference number: 5 (lower is better)
Translates to: IFTSSFQLCLPFMTMSLLLILSK*FLKKGL
Trigger: TAGCCCCTTCTTCAGAAACAACTTGGATAAAATGAG...GAGCAGAGACATGGTCATAAAGGGTAAGCATAGTTGGAATGACGATGTAAAAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CAA 90 bp TGGGAGCATTCCAAAGAACTGTCCATATATTTTTACATCGTCATTCCAACTATGCTTTGTTACAGACTCTaGAGCTTCAGAGATAGCCTT +
Preference number: 5 (lower is better)
Translates to: WEHSKELSIYFYIVIPTMLCYRL*SFRDSL
Trigger: AAGGCTATCTCTGAAGCTCAAGAGTCTGTAACAAAG...CATAGTTGGAATGACGATGTAAAAATATATGGACAGTTCTTTGGAATGCTCCCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS-3UTR CAA 90 bp AACATTTCTCAGCAAATTTACAGTTGGGAAAGGCTTTGCAAGGTGAAATGGGATCCTCTGTTGAGTTCCTaGACTTTTTCCTGTATTATC +
Preference number: 5 (lower is better)
Translates to: NISQQIYSWERLCKVKWDPLLSS*TFSCII
Trigger: GATAATACAGGAAAAAGTCAAGGAACTCAACAGAGG...ATCCCATTTCACCTTGCAAAGCCTTTCCCAACTGTAAATTTGCTGAGAAATGTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000223451.2
CDS-3UTR CAA 90 bp TTTTACATCGTCATTCCAACTATGCTTACCCTTTATGACCATGTCTCTGCTCACCATGTCATAGTAATCTaGACTCATCTCCATTGTTTC +
Preference number: 5 (lower is better)
Translates to: FYIVIPTMLTLYDHVSAHHVIVI*THLHCF
Trigger: GAAACAATGGAGATGAGTCAAGATTACTATGACATG...GTGAGCAGAGACATGGTCATAAAGGGTAAGCATAGTTGGAATGACGATGTAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110105.10
CDS-3UTR CAA 90 bp TATTTTTACATCGTCATTCCAACTATGCTTACCCTTTATGACCATGTCTCTGCTAGCGTCACTATAAACTaGGGACTTGCAGGTTTATCT +
Preference number: 5 (lower is better)
Translates to: YFYIVIPTMLTLYDHVSASVTIN*GLAGLS
Trigger: AGATAAACCTGCAAGTCCCAAGTTTATAGTGACGCT...AGCAGAGACATGGTCATAAAGGGTAAGCATAGTTGGAATGACGATGTAAAAATA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110105.10
CDS-3UTR CAA 90 bp AACATTTCTCAGCAAATTTACAGTTGGGAAAGGCTTTGCAAGGTGAAATGGGATCATGTCATAGTAATCTaGACTCATCTCCATTGTTTC +
Preference number: 5 (lower is better)
Translates to: NISQQIYSWERLCKVKWDHVIVI*THLHCF
Trigger: GAAACAATGGAGATGAGTCAAGATTACTATGACATG...ATCCCATTTCACCTTGCAAAGCCTTTCCCAACTGTAAATTTGCTGAGAAATGTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223451.2
CDS TCA 90 bp TTTGCATCAGTAGTCTCTGACTGTGACTCAAATTCTAGTCTCTCTTaGAAATCTTCCAACTGTCTGTTGCATTCAGATGTTGATGTTAAA +
Preference number: 5 (lower is better)
Translates to: FASVVSDCDSNSSLS*KSSNCLLHSDVDVK
Trigger: TTTAACATCAACATCTGAATGCAACAGACAGTTGGAAGATTTTCAAGAGAGACTAGAATTTGAGTCACAGTCAGAGACTACTGATGCAAA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021399.9
CDS GCA 72 bp CCCGCCCCGTTACTCCTGGCAACCGCCTGCCCGCCATaGCCAGCGCCCGCCGACGCGGGCCTCACCCGGATC +
Preference number: 6 (lower is better)
Translates to: PAPLLLATACPP*PAPADAGLTRI
Trigger: GATCCGGGTGAGGCCCGCGTCGGCGGGCGCTGGGCATGGCGGGCAGGCGGTTGCCAGGAGTAACGGGGCGGG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223083.2
CDS GCA 72 bp GTGGCTCACACAACCGTCCTGCTTCGGATACCTGGCTaGTTTGTACATCCAGCTGCTTGGCAGCGTGAGCAC +
Preference number: 6 (lower is better)
Translates to: VAHTTVLLRIPG*FVHPAAWQREH
Trigger: GTGCTCACGCTGCCAAGCAGCTGGATGTACAAAGCAGCCAGGTATCCGAAGCAGGACGGTTGTGTGAGCCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS GCA 72 bp GAACTAGAAACAGCAAGGGGAGGGACGGCAGCTTCGTaGCTTCTCTCATCTCCCCGACTGAAACTGCTCTTG +
Preference number: 6 (lower is better)
Translates to: ELETARGGTAAS*LLSSPRLKLLL
Trigger: CAAGAGCAGTTTCAGTCGGGGAGATGAGAGAAGGCACGAAGCTGCCGTCCCTCCCCTTGCTGTTTCTAGTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
ENSMUST00000223083.2
CDS GCA 72 bp TACGCTGCTAAGCACTGGTGGCTCACACAACCGTCCTaGTTCGGATACCTGGCTGCTTTGTACATCCAGCTG +
Preference number: 6 (lower is better)
Translates to: YAAKHWWLTQPS*FGYLAALYIQL
Trigger: CAGCTGGATGTACAAAGCAGCCAGGTATCCGAAGCAGGACGGTTGTGTGAGCCACCAGTGCTTAGCAGCGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS GCA 72 bp TCTGGGTCCTCAAGCTGCCTGCTCAGCAAATGCAACTaGTGTGGGTGGAGGAGACCTCTGAGTCCCTTGTTT +
Preference number: 6 (lower is better)
Translates to: SGSSSCLLSKCN*CGWRRPLSPLF
Trigger: AAACAAGGGACTCAGAGGTCTCCTCCACCCACAGCAGTTGCATTTGCTGAGCAGGCAGCTTGAGGACCCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110105.10
CDS TCA 72 bp GTAACGGCAGAGCTGGCCATTAGAAGACGGTGCTGGTaGCGACACTGGTTTTGGAGTCAGTATCGAGGCTCT +
Preference number: 6 (lower is better)
Translates to: VTAELAIRRRCW*RHWFWSQYRGS
Trigger: AGAGCCTCGATACTGACTCCAAAACCAGTGTCGTCACCAGCACCGTCTTCTAATGGCCAGCTCTGCCGTTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000021399.9
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
ENSMUST00000220660.2
CDS TCA 72 bp GGACGGCAGCTTCGTGCCTTCTCTCATCTCCCCGACTaGAACTGCTCTTGTTTGAAGGCACGTGACTATCGA +
Preference number: 6 (lower is better)
Translates to: GRQLRAFSHLPD*NCSCLKARDYR
Trigger: TCGATAGTCACGTGCCTTCAAACAAGAGCAGTTTCAGTCGGGGAGATGAGAGAAGGCACGAAGCTGCCGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
ENSMUST00000223083.2
CDS TCA 72 bp CCTTCTCTCATCTCCCCGACTGAAACTGCTCTTGTTTaGAGGCACGTGACTATCGAAGATGCTGGCGTCAGG +
Preference number: 6 (lower is better)
Translates to: PSLISPTETALV*RHVTIEDAGVR
Trigger: CCTGACGCCAGCATCTTCGATAGTCACGTGCCTTCAAACAAGAGCAGTTTCAGTCGGGGAGATGAGAGAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
ENSMUST00000223083.2
CDS CAA 72 bp CGAAGGGCATCTGCAGTCTTCATCCCCGAATCCTGGTaGGGTGTCACTACTATTTCCTCAGACAGCTTTGGC +
Preference number: 6 (lower is better)
Translates to: RRASAVFIPESW*GVTTISSDSFG
Trigger: GCCAAAGCTGTCTGAGGAAATAGTAGTGACACCCAACCAGGATTCGGGGATGAAGACTGCAGATGCCCTTCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110105.10
ENSMUST00000223451.2
CDS CAA 90 bp GAAAGGACCCGAAGGGCATCTGCAGTCTTCATCCCCGAATCCTGGTaGGGTGTCACTACTATTTCCTCAGACAGCTTTGGCTTCTTCAGA +
Preference number: 6 (lower is better)
Translates to: ERTRRASAVFIPESW*GVTTISSDSFGFFR
Trigger: TCTGAAGAAGCCAAAGCTGTCTGAGGAAATAGTAGTGACACCCAACCAGGATTCGGGGATGAAGACTGCAGATGCCCTTCGGGTCCTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110105.10
ENSMUST00000223451.2
CDS TCA 72 bp TGGTTGTACAAGATCTCGTGTCTGCATAAGGTGTCCTaGAAGGACCCGAAGGGCATCTGCAGTCTTCATCCC +
Preference number: 6 (lower is better)
Translates to: WLYKISCLHKVS*KDPKGICSLHP
Trigger: GGGATGAAGACTGCAGATGCCCTTCGGGTCCTTTCAGGACACCTTATGCAGACACGAGATCTTGTACAACCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110105.10
CDS GCA 72 bp TGCTTTGTACATCCAGCTGCTTGGCAGCGTGAGCACTaGTTTGCTGCGGATGAAGTTGCAGCCTGTTTAAGT +
Preference number: 6 (lower is better)
Translates to: CFVHPAAWQREH*FAADEVAACLS
Trigger: ACTTAAACAGGCTGCAACTTCATCCGCAGCAAAGCAGTGCTCACGCTGCCAAGCAGCTGGATGTACAAAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS GCA 72 bp AGGGAAGTAACGGCAGAGCTGGCCATTAGAAGACGGTaGTGGTTTTGGAGTCAGTATCGAGGCTCTTCTACT +
Preference number: 6 (lower is better)
Translates to: REVTAELAIRRR*WFWSQYRGSST
Trigger: AGTAGAAGAGCCTCGATACTGACTCCAAAACCAGCACCGTCTTCTAATGGCCAGCTCTGCCGTTACTTCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221532.2
CDS CCA 72 bp GAAGGGCATCTGCAGTCTTCATCCCCGAATCCTGGTTaGGTGTCACTACTATTTCCTCAGACAGCTTTGGCT +
Preference number: 6 (lower is better)
Translates to: EGHLQSSSPNPG*VSLLFPQTALA
Trigger: AGCCAAAGCTGTCTGAGGAAATAGTAGTGACACCCAACCAGGATTCGGGGATGAAGACTGCAGATGCCCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110105.10
ENSMUST00000223451.2
CDS CCA 72 bp ACCCGAAGGGCATCTGCAGTCTTCATCCCCGAATCCTaGTTGGGTGTCACTACTATTTCCTCAGACAGCTTT +
Preference number: 6 (lower is better)
Translates to: TRRASAVFIPES*LGVTTISSDSF
Trigger: AAAGCTGTCTGAGGAAATAGTAGTGACACCCAACCAGGATTCGGGGATGAAGACTGCAGATGCCCTTCGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110105.10
ENSMUST00000223451.2
CDS CAA 72 bp CTTCAGAGGGTGCTGGTTCCCTCAGAGGTTTCACTGTaGACATTAGCCGGGTGGAAGCTCCATCATCATATG +
Preference number: 6 (lower is better)
Translates to: LQRVLVPSEVSL*TLAGWKLHHHM
Trigger: CATATGATGATGGAGCTTCCACCCGGCTAATGTCAACAGTGAAACCTCTGAGGGAACCAGCACCCTCTGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
CDS GCA 72 bp GTACTTGCAGCGCTCCAGAAGTTTTTCTGGTTTCTGTaGCACACTCAGGTCAGTCATCTCGGCTTGACTCAT +
Preference number: 6 (lower is better)
Translates to: VLAALQKFFWFL*HTQVSHLGLTH
Trigger: ATGAGTCAAGCCGAGATGACTGACCTGAGTGTGGCACAGAAACCAGAAAAACTTCTGGAGCGCTGCAAGTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021399.9
ENSMUST00000110104.10
ENSMUST00000221532.2
CDS GCA 72 bp GTACTTGCAGCGCTCCAGAAGTTTTTCTGGTTTCTGTaGCACACTCAGGTCAGTCATCTCGGCGTTGGAAAA +
Preference number: 6 (lower is better)
Translates to: VLAALQKFFWFL*HTQVSHLGVGK
Trigger: TTTTCCAACGCCGAGATGACTGACCTGAGTGTGGCACAGAAACCAGAAAAACTTCTGGAGCGCTGCAAGTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110105.10
CDS CCA 72 bp GAAGTAACGGCAGAGCTGGCCATTAGAAGACGGTGCTaGTTTTGGAGTCAGTATCGAGGCTCTTCTACTCAT +
Preference number: 6 (lower is better)
Translates to: EVTAELAIRRRC*FWSQYRGSSTH
Trigger: ATGAGTAGAAGAGCCTCGATACTGACTCCAAAACCAGCACCGTCTTCTAATGGCCAGCTCTGCCGTTACTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221532.2
CDS CAA 72 bp TGCAACTGCTGTGGGTGGAGGAGACCTCTGAGTCCCTaGTTTGAGGCTGAAGTTTGGTTTACGGGTTTCATT +
Preference number: 6 (lower is better)
Translates to: CNCCGWRRPLSP*FEAEVWFTGFI
Trigger: AATGAAACCCGTAAACCAAACTTCAGCCTCAAACAAGGGACTCAGAGGTCTCCTCCACCCACAGCAGTTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110105.10
CDS GCA 72 bp GTACTTGCAGCGCTCCAGAAGTTTTTCTGGTTTCTGTaGCACACTCAGGTCAGTCATCTCGGCTTGACTTTT +
Preference number: 6 (lower is better)
Translates to: VLAALQKFFWFL*HTQVSHLGLTF
Trigger: AAAAGTCAAGCCGAGATGACTGACCTGAGTGTGGCACAGAAACCAGAAAAACTTCTGGAGCGCTGCAAGTAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057000.17
CDS GCA 72 bp GGGGACACCATCCAGCGTCACTATAAACTTGGGACTTaGAGGTTTATCTGGTTGTACAAGATCTCGTGTCTG +
Preference number: 6 (lower is better)
Translates to: GDTIQRHYKLGT*RFIWLYKISCL
Trigger: CAGACACGAGATCTTGTACAACCAGATAAACCTGCAAGTCCCAAGTTTATAGTGACGCTGGATGGTGTCCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110105.10
CDS TCA 72 bp GGTTTCTGTGCCACACTCAGGTCAGTCATCTCGGCTTaGCTCATCTCCATTGTTTCTACCATTACTGGATCA +
Preference number: 6 (lower is better)
Translates to: GFCATLRSVISA*LISIVSTITGS
Trigger: TGATCCAGTAATGGTAGAAACAATGGAGATGAGTCAAGCCGAGATGACTGACCTGAGTGTGGCACAGAAACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021399.9
ENSMUST00000110104.10
ENSMUST00000221532.2
CDS TCA 72 bp TTTTGCCCCTGGACCATTTCTGCTAGCAATTCTTCTTaGGAAGTTCGAGTTCTGGGAGCAACTGGAAGTGTC +
Preference number: 6 (lower is better)
Translates to: FCPWTISASNSS*EVRVLGATGSV
Trigger: GACACTTCCAGTTGCTCCCAGAACTCGAACTTCTCAAGAAGAATTGCTAGCAGAAATGGTCCAGGGGCAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
ENSMUST00000221532.2
ENSMUST00000223451.2
CDS CAA 72 bp CACTCAGGTCAGTCATCTCGGCTTGACTCATCTCCATaGTTTCTACCATTACTGGATCAATTTGCAGTCGGG +
Preference number: 6 (lower is better)
Translates to: HSGQSSRLDSSP*FLPLLDQFAVG
Trigger: CCCGACTGCAAATTGATCCAGTAATGGTAGAAACAATGGAGATGAGTCAAGCCGAGATGACTGACCTGAGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021399.9
ENSMUST00000110104.10
ENSMUST00000221532.2
CDS CAA 90 bp AAAGGTAGGAAATATTGCCCAGCTCATTTAGTGAACAAGAAGCACTaGTCAGAGAGCCTAAGTCAGCTGGCTCTGGTGAGAGGAAAACTG +
Preference number: 6 (lower is better)
Translates to: KGRKYCPAHLVNKKH*SESLSQLALVRGKL
Trigger: CAGTTTTCCTCTCACCAGAGCCAGCTGACTTAGGCTCTCTGACAAGTGCTTCTTGTTCACTAAATGAGCTGGGCAATATTTCCTACCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021399.9
CDS CCA 72 bp CAGCGTCACTATAAACTTGGGACTTGCAGGTTTATCTaGTTGTACAAGATCTCGTGTCTGCATAAGGTGTCC +
Preference number: 6 (lower is better)
Translates to: QRHYKLGTCRFI*LYKISCLHKVS
Trigger: GGACACCTTATGCAGACACGAGATCTTGTACAACCAGATAAACCTGCAAGTCCCAAGTTTATAGTGACGCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110105.10
CDS CAA 72 bp AATACACCATGGAGCCATACGGTGAATCGAATTGTGTaGTTCCCTAGAAACAGGGACAGGTCCTCTGTCATT +
Preference number: 6 (lower is better)
Translates to: NTPWSHTVNRIV*FPRNRDRSSVI
Trigger: AATGACAGAGGACCTGTCCCTGTTTCTAGGGAACAACACAATTCGATTCACCGTATGGCTCCATGGTGTATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
ENSMUST00000223083.2
CDS CCA 72 bp TTTCTGCTAGCAATTCTTCTTGAGAAGTTCGAGTTCTaGGAGCAACTGGAAGTGTCTGTTTCTGTGGAACTG +
Preference number: 6 (lower is better)
Translates to: FLLAILLEKFEF*EQLEVSVSVEL
Trigger: CAGTTCCACAGAAACAGACACTTCCAGTTGCTCCCAGAACTCGAACTTCTCAAGAAGAATTGCTAGCAGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000057000.17
ENSMUST00000110104.10
ENSMUST00000110105.10
ENSMUST00000221532.2
ENSMUST00000223451.2
CDS TCA 72 bp GGATCAATTTGCAGTCGGGATAACAATTGCCTCTGTTaGGTTCCTTTCTCAACCTCTGTTAGGAAGCCAATT +
Preference number: 6 (lower is better)
Translates to: GSICSRDNNCLC*VPFSTSVRKPI
Trigger: AATTGGCTTCCTAACAGAGGTTGAGAAAGGAACTCAACAGAGGCAATTGTTATCCCGACTGCAAATTGATCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021399.9
CDS CAA 72 bp TGGATTCCATGTCATAGTAATCTTGACTCATCTCCATaGTTTCTACCATTACTGGATCAATTTGCAGTCGGG +
Preference number: 6 (lower is better)
Translates to: WIPCHSNLDSSP*FLPLLDQFAVG
Trigger: CCCGACTGCAAATTGATCCAGTAATGGTAGAAACAATGGAGATGAGTCAAGATTACTATGACATGGAATCCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110105.10
ENSMUST00000223451.2