Pregenerated sensors for ZC2HC1B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019815Ensembl transcript IDs: ENSMUST00000019954.6
Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTTTACTTGGGCTGGAGAGCACAGCAGGTATCTAATCTGGCCTACTaGTTACTAGCCACTCCCTTAGAAAGGCCATCCCCTTGGAGCCTC | + |
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Preference number: 1 (lower is better) Translates to: VYLGWRAQQVSNLAY*LLATPLERPSPWSL Trigger: GAGGCTCCAAGGGGATGGCCTTTCTAAGGGAGTGGCTAGTAACCAGTAGGCCAGATTAGATACCTGCTGTGCTCTCCAGCCCAAGTAAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019954.6 |
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| 3UTR CCA 90 bp | TCCTTTTCTGTAGGTGGCAACATTAACTACCACATAGAGGCTCAGTaGGAGGCACAAGGCCAGGATCATGATGGTGGCTTATGCTTGCTG | + |
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Preference number: 1 (lower is better) Translates to: SFSVGGNINYHIEAQ*EAQGQDHDGGLCLL Trigger: CAGCAAGCATAAGCCACCATCATGATCCTGGCCTTGTGCCTCCCACTGAGCCTCTATGTGGTAGTTAATGTTGCCACCTACAGAAAAGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019954.6 |
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| 3UTR-3UTR GCA 90 bp | CTGGCCTACTGGTTACTAGCCACTCCCTTAGAAAGGCCATCCCCTTGGAGCCTCTCCACAGTTCTGCTCTaGTGCAGGGCACCCATTCAT | + |
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Preference number: 2 (lower is better) Translates to: LAYWLLATPLERPSPWSLSTVLL*CRAPIH Trigger: ATGAATGGGTGCCCTGCAGCAGAGCAGAACTGTGGA...GAGGCTCCAAGGGGATGGCCTTTCTAAGGGAGTGGCTAGTAACCAGTAGGCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019954.6 |
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| 3UTR CAA 90 bp | CATGGTGTCTGCTCTGACTTACTTGAGCTAGCCATGATGTCATTCTaGATCTCCACAGTTCTGCTCTGCTGCAGGGCACCCATTCATAAC | + |
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Preference number: 2 (lower is better) Translates to: HGVCSDLLELAMMSF*ISTVLLCCRAPIHN Trigger: GTTATGAATGGGTGCCCTGCAGCAGAGCAGAACTGTGGAGATCAAGAATGACATCATGGCTAGCTCAAGTAAGTCAGAGCAGACACCATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019954.6 |
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| 3UTR-3UTR GCA 90 bp | GTTGTGCAGTTTACTTGGGCTGGAGAGCACAGCAGGTATCTAATCTGGCCTACTGTGGCTTATGCTTGCTaGCACTCTGATGAAGTTATT | + |
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Preference number: 2 (lower is better) Translates to: VVQFTWAGEHSRYLIWPTVAYAC*HSDEVI Trigger: AATAACTTCATCAGAGTGGCAGCAAGCATAAGCCAC...AGTAGGCCAGATTAGATACCTGCTGTGCTCTCCAGCCCAAGTAAACTGCACAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019954.6 |
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| 3UTR TCA 72 bp | TCATCTCAGCAGGATGGAGGCTCCGCTCCCATGACTTaGCAACGCAAGCTCATGGTGTCTGCTCTGACTTAC | + |
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Preference number: 3 (lower is better) Translates to: SSQQDGGSAPMT*QRKLMVSALTY Trigger: GTAAGTCAGAGCAGACACCATGAGCTTGCGTTGTCAAGTCATGGGAGCGGAGCCTCCATCCTGCTGAGATGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019954.6 |
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| 3UTR TCA 72 bp | CATAGAGGCTCAGTGGGAGGCACAAGGCCAGGATCATaGTGGTGGCTTATGCTTGCTGCCACTCTGATGAAG | + |
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Preference number: 3 (lower is better) Translates to: HRGSVGGTRPGS*WWLMLAATLMK Trigger: CTTCATCAGAGTGGCAGCAAGCATAAGCCACCATCATGATCCTGGCCTTGTGCCTCCCACTGAGCCTCTATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019954.6 |
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| 3UTR CCA 72 bp | GGCTGGAGAGCACAGCAGGTATCTAATCTGGCCTACTaGTTACTAGCCACTCCCTTAGAAAGGCCATCCCCT | + |
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Preference number: 3 (lower is better) Translates to: GWRAQQVSNLAY*LLATPLERPSP Trigger: AGGGGATGGCCTTTCTAAGGGAGTGGCTAGTAACCAGTAGGCCAGATTAGATACCTGCTGTGCTCTCCAGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019954.6 |
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| 3UTR-3UTR CAA 90 bp | CTGGTTACTAGCCACTCCCTTAGAAAGGCCATCCCCTTGGAGCCTCAGTCTCCTGCCATGATGTCATTCTaGATCTCCACAGTTCTGCTC | + |
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Preference number: 3 (lower is better) Translates to: LVTSHSLRKAIPLEPQSPAMMSF*ISTVLL Trigger: GAGCAGAACTGTGGAGATCAAGAATGACATCATGGC...AGGAGACTGAGGCTCCAAGGGGATGGCCTTTCTAAGGGAGTGGCTAGTAACCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019954.6 |
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| 3UTR CCA 72 bp | GTAGGTGGCAACATTAACTACCACATAGAGGCTCAGTaGGAGGCACAAGGCCAGGATCATGATGGTGGCTTA | + |
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Preference number: 3 (lower is better) Translates to: VGGNINYHIEAQ*EAQGQDHDGGL Trigger: TAAGCCACCATCATGATCCTGGCCTTGTGCCTCCCACTGAGCCTCTATGTGGTAGTTAATGTTGCCACCTAC 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019954.6 |
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| 3UTR GCA 72 bp | AGGCACAAGGCCAGGATCATGATGGTGGCTTATGCTTaGTGCCACTCTGATGAAGTTATTCATTTGTACACT | + |
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Preference number: 3 (lower is better) Translates to: RHKARIMMVAYA*CHSDEVIHLYT Trigger: AGTGTACAAATGAATAACTTCATCAGAGTGGCAGCAAGCATAAGCCACCATCATGATCCTGGCCTTGTGCCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019954.6 |
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| CDS-3UTR CCA 90 bp | CTACTGGTTACTAGCCACTCCCTTAGAAAGGCCATCCCCTTGGAGCCTCAGTCTATCTGGGTTGGAGGTTaGACGGGGTGGAGGTGGGAG | + |
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Preference number: 4 (lower is better) Translates to: LLVTSHSLRKAIPLEPQSIWVGG*TGWRWE Trigger: CTCCCACCTCCACCCCGTCCAACCTCCAACCCAGAT...AGACTGAGGCTCCAAGGGGATGGCCTTTCTAAGGGAGTGGCTAGTAACCAGTAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019954.6 |
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| 3UTR CAA 72 bp | ATCATCTCAGCAGGATGGAGGCTCCGCTCCCATGACTaGACAACGCAAGCTCATGGTGTCTGCTCTGACTTA | + |
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Preference number: 4 (lower is better) Translates to: IISAGWRLRSHD*TTQAHGVCSDL Trigger: TAAGTCAGAGCAGACACCATGAGCTTGCGTTGTCAAGTCATGGGAGCGGAGCCTCCATCCTGCTGAGATGAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019954.6 |
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| CDS-3UTR CCA 90 bp | AGCCATGATGTCATTCTTGATCTCCACAGTTCTGCTCTGCTGCAGGGCACCCATAGTCTGGCTGCCATTTaGATTGGATCAAAGACGGGT | + |
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Preference number: 4 (lower is better) Translates to: SHDVILDLHSSALLQGTHSLAAI*IGSKTG Trigger: ACCCGTCTTTGATCCAATCCAAATGGCAGCCAGACT...ATGGGTGCCCTGCAGCAGAGCAGAACTGTGGAGATCAAGAATGACATCATGGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019954.6 |
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| CDS-3UTR GCA 90 bp | CTGGTTACTAGCCACTCCCTTAGAAAGGCCATCCCCTTGGAGCCTCAGTCTCCTGAAATAACTTCTGATTaGCATCTTCCACAAGCAGCT | + |
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Preference number: 4 (lower is better) Translates to: LVTSHSLRKAIPLEPQSPEITSD*HLPQAA Trigger: AGCTGCTTGTGGAAGATGGCAATCAGAAGTTATTTC...AGGAGACTGAGGCTCCAAGGGGATGGCCTTTCTAAGGGAGTGGCTAGTAACCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019954.6 |
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| CDS-3UTR CCA 90 bp | TTGACAACGCAAGCTCATGGTGTCTGCTCTGACTTACTTGAGCTAGCCATGATGTTACGGGCTGAACCTTaGGCTGAGGAGATTTACCCA | + |
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Preference number: 4 (lower is better) Translates to: LTTQAHGVCSDLLELAMMLRAEP*AEEIYP Trigger: TGGGTAAATCTCCTCAGCCCAAGGTTCAGCCCGTAA...CATCATGGCTAGCTCAAGTAAGTCAGAGCAGACACCATGAGCTTGCGTTGTCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019954.6 |
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| 3UTR CAA 72 bp | AAAATGCATGTCGGGCATGTTTGTTGTGCAGTTTACTaGGGCTGGAGAGCACAGCAGGTATCTAATCTGGCC | + |
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Preference number: 4 (lower is better) Translates to: KMHVGHVCCAVY*GWRAQQVSNLA Trigger: GGCCAGATTAGATACCTGCTGTGCTCTCCAGCCCAAGTAAACTGCACAACAAACATGCCCGACATGCATTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019954.6 |
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| CDS-3UTR TCA 90 bp | ATTAACTACCACATAGAGGCTCAGTGGGAGGCACAAGGCCAGGATCATGATGGTCAGGGAAATAACTTCTaGTTGCCATCTTCCACAAGC | + |
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Preference number: 4 (lower is better) Translates to: INYHIEAQWEAQGQDHDGQGNNF*LPSSTS Trigger: GCTTGTGGAAGATGGCAATCAGAAGTTATTTCCCTG...ACCATCATGATCCTGGCCTTGTGCCTCCCACTGAGCCTCTATGTGGTAGTTAAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019954.6 |
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| CDS-3UTR GCA 90 bp | CAGTTTACTTGGGCTGGAGAGCACAGCAGGTATCTAATCTGGCCTACTGGTTACTTCCAGAACATCTGTTaGAAAGCATCTCCCACAGAC | + |
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Preference number: 4 (lower is better) Translates to: QFTWAGEHSRYLIWPTGYFQNIC*KASPTD Trigger: GTCTGTGGGAGATGCTTTGCAACAGATGTTCTGGAA...GTAACCAGTAGGCCAGATTAGATACCTGCTGTGCTCTCCAGCCCAAGTAAACTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019954.6 |
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| CDS-3UTR CCA 90 bp | GGTGTCTGCTCTGACTTACTTGAGCTAGCCATGATGTCATTCTTGATCTCCACAGAATATAATCTGGGTTaGAGGTTGGACGGGGTGGAG | + |
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Preference number: 4 (lower is better) Translates to: GVCSDLLELAMMSFLISTEYNLG*RLDGVE Trigger: CTCCACCCCGTCCAACCTCCAACCCAGATTATATTC...TGTGGAGATCAAGAATGACATCATGGCTAGCTCAAGTAAGTCAGAGCAGACACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019954.6 |
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| CDS-3UTR CCA 90 bp | CAGTTTACTTGGGCTGGAGAGCACAGCAGGTATCTAATCTGGCCTACTGGTTACGAGATTTACCCACAGTaGGAATGTCAGTTCCTTGTA | + |
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Preference number: 4 (lower is better) Translates to: QFTWAGEHSRYLIWPTGYEIYPQ*ECQFLV Trigger: TACAAGGAACTGACATTCCCACTGTGGGTAAATCTC...GTAACCAGTAGGCCAGATTAGATACCTGCTGTGCTCTCCAGCCCAAGTAAACTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019954.6 |
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| CDS-3UTR CCA 90 bp | TGTGCAGTTTACTTGGGCTGGAGAGCACAGCAGGTATCTAATCTGGCCTACTGGAAATTAATATGTCGTTaGGCAGCGGTTTCGTTAAAC | + |
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Preference number: 4 (lower is better) Translates to: CAVYLGWRAQQVSNLAYWKLICR*AAVSLN Trigger: GTTTAACGAAACCGCTGCCCAACGACATATTAATTT...CCAGTAGGCCAGATTAGATACCTGCTGTGCTCTCCAGCCCAAGTAAACTGCACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019954.6 |
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| CDS-3UTR GCA 90 bp | TGCTCTGACTTACTTGAGCTAGCCATGATGTCATTCTTGATCTCCACAGTTCTGGTTCCTTGTAATCTTTaGTTTAAGGAGTTGAAGGGT | + |
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Preference number: 4 (lower is better) Translates to: CSDLLELAMMSFLISTVLVPCNL*FKELKG Trigger: ACCCTTCAACTCCTTAAAGCAAAGATTACAAGGAAC...CAGAACTGTGGAGATCAAGAATGACATCATGGCTAGCTCAAGTAAGTCAGAGCA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019954.6 |
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| CDS-3UTR CAA 90 bp | ATTAACTACCACATAGAGGCTCAGTGGGAGGCACAAGGCCAGGATCATGATGGTCAGTCTGGCTGCCATTaGGATTGGATCAAAGACGGG | + |
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Preference number: 5 (lower is better) Translates to: INYHIEAQWEAQGQDHDGQSGCH*DWIKDG Trigger: CCCGTCTTTGATCCAATCCAAATGGCAGCCAGACTG...ACCATCATGATCCTGGCCTTGTGCCTCCCACTGAGCCTCTATGTGGTAGTTAAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019954.6 |
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| CDS CCA 90 bp | GGCCTTACACTGAGCTCTGGATACCAGTCTGGCTGCCATTTGGATTaGATCAAAGACGGGTCGAGAGGTCTGATTTTTGCAGAAATTAAT | + |
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Preference number: 5 (lower is better) Translates to: GLTLSSGYQSGCHLD*IKDGSRGLIFAEIN Trigger: ATTAATTTCTGCAAAAATCAGACCTCTCGACCCGTCTTTGATCCAATCCAAATGGCAGCCAGACTGGTATCCAGAGCTCAGTGTAAGGCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019954.6 |
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| CDS-3UTR CAA 90 bp | TGGTGGCTTATGCTTGCTGCCACTCTGATGAAGTTATTCATTTGTACACTTGACTGGCTGCCATTTGGATaGGATCAAAGACGGGTCGAG | + |
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Preference number: 5 (lower is better) Translates to: WWLMLAATLMKLFICTLDWLPFG*DQRRVE Trigger: CTCGACCCGTCTTTGATCCAATCCAAATGGCAGCCA...GTCAAGTGTACAAATGAATAACTTCATCAGAGTGGCAGCAAGCATAAGCCACCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019954.6 |
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| CDS TCA 90 bp | AGTCTGGCTGCCATTTGGATTGGATCAAAGACGGGTCGAGAGGTCTaGTTTTTGCAGAAATTAATATGTCGTTGGGCAGCGGTTTCGTTA | + |
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Preference number: 5 (lower is better) Translates to: SLAAIWIGSKTGREV*FLQKLICRWAAVSL Trigger: TAACGAAACCGCTGCCCAACGACATATTAATTTCTGCAAAAATCAGACCTCTCGACCCGTCTTTGATCCAATCCAAATGGCAGCCAGACT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019954.6 |
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| CDS-3UTR CAA 90 bp | GTTGTGCAGTTTACTTGGGCTGGAGAGCACAGCAGGTATCTAATCTGGCCTACTCATACAATAAGGGCATaGAATATAATCTGGGTTGGA | + |
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Preference number: 5 (lower is better) Translates to: VVQFTWAGEHSRYLIWPTHTIRA*NIIWVG Trigger: TCCAACCCAGATTATATTCAATGCCCTTATTGTATG...AGTAGGCCAGATTAGATACCTGCTGTGCTCTCCAGCCCAAGTAAACTGCACAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019954.6 |
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| CDS GCA 72 bp | CTGGGCCTTACACTGAGCTCTGGATACCAGTCTGGCTaGCATTTGGATTGGATCAAAGACGGGTCGAGAGGT | + |
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Preference number: 6 (lower is better) Translates to: LGLTLSSGYQSG*HLDWIKDGSRG Trigger: ACCTCTCGACCCGTCTTTGATCCAATCCAAATGGCAGCCAGACTGGTATCCAGAGCTCAGTGTAAGGCCCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019954.6 |
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| CDS CAA 72 bp | ACTGAGCTCTGGATACCAGTCTGGCTGCCATTTGGATaGGATCAAAGACGGGTCGAGAGGTCTGATTTTTGC | + |
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Preference number: 6 (lower is better) Translates to: TELWIPVWLPFG*DQRRVERSDFC Trigger: GCAAAAATCAGACCTCTCGACCCGTCTTTGATCCAATCCAAATGGCAGCCAGACTGGTATCCAGAGCTCAGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019954.6 |
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| CDS TCA 72 bp | GCCATTTGGATTGGATCAAAGACGGGTCGAGAGGTCTaGTTTTTGCAGAAATTAATATGTCGTTGGGCAGCG | + |
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Preference number: 6 (lower is better) Translates to: AIWIGSKTGREV*FLQKLICRWAA Trigger: CGCTGCCCAACGACATATTAATTTCTGCAAAAATCAGACCTCTCGACCCGTCTTTGATCCAATCCAAATGGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019954.6 |
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| CDS CAA 90 bp | CCCTCTTTAATGGCTAGAGTGAATTGTTTTGCTGATCGGATCGTATaGATGAAATCCTCGTGCTGCTGTCTCCAGTTAGATTTCCTTACG | + |
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Preference number: 6 (lower is better) Translates to: PSLMARVNCFADRIV*MKSSCCCLQLDFLT Trigger: CGTAAGGAAATCTAACTGGAGACAGCAGCACGAGGATTTCATCAATACGATCCGATCAGCAAAACAATTCACTCTAGCCATTAAAGAGGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019954.6 |
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| CDS CAA 90 bp | AAAGACGGGTCGAGAGGTCTGATTTTTGCAGAAATTAATATGTCGTaGGGCAGCGGTTTCGTTAAACCTCCTCATACAATAAGGGCATTG | + |
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Preference number: 6 (lower is better) Translates to: KDGSRGLIFAEINMS*GSGFVKPPHTIRAL Trigger: CAATGCCCTTATTGTATGAGGAGGTTTAACGAAACCGCTGCCCAACGACATATTAATTTCTGCAAAAATCAGACCTCTCGACCCGTCTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019954.6 |
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| CDS CAA 72 bp | ATGGCTAGAGTGAATTGTTTTGCTGATCGGATCGTATaGATGAAATCCTCGTGCTGCTGTCTCCAGTTAGAT | + |
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Preference number: 6 (lower is better) Translates to: MARVNCFADRIV*MKSSCCCLQLD Trigger: ATCTAACTGGAGACAGCAGCACGAGGATTTCATCAATACGATCCGATCAGCAAAACAATTCACTCTAGCCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019954.6 |
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| CDS CAA 72 bp | TCGAGAGGTCTGATTTTTGCAGAAATTAATATGTCGTaGGGCAGCGGTTTCGTTAAACCTCCTCATACAATA | + |
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Preference number: 6 (lower is better) Translates to: SRGLIFAEINMS*GSGFVKPPHTI Trigger: TATTGTATGAGGAGGTTTAACGAAACCGCTGCCCAACGACATATTAATTTCTGCAAAAATCAGACCTCTCGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019954.6 |
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