RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZBTB7C (Mus musculus)

Ensembl gene IDs: ENSMUSG00000044646

Ensembl transcript IDs: ENSMUST00000058997.15, ENSMUST00000167921.2, ENSMUST00000236462.2

Found 291 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TGGGAGGGACTCCCCCATAGGGTCAAACGGCTCAACCAAGGTACCTaGCCAGGACACAGTCCTCATGCTAGCTCCTCCCGGCCAGCTCGG +
Preference number: 1 (lower is better)
Translates to: WEGLPHRVKRLNQGT*PGHSPHASSSRPAR
Trigger: CCGAGCTGGCCGGGAGGAGCTAGCATGAGGACTGTGTCCTGGCCAGGTACCTTGGTTGAGCCGTTTGACCCTATGGGGGAGTCCCTCCCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
3UTR CCA 90 bp CCAGGCCCAGGCCTTGCAAGCAGGTGGATTCTTCTTCCTGGGATCTaGCCAGGACACAGTCCTCATGCTAGCTCCTCCCGGCCAGCTCGG +
Preference number: 1 (lower is better)
Translates to: PGPGLASRWILLPGI*PGHSPHASSSRPAR
Trigger: CCGAGCTGGCCGGGAGGAGCTAGCATGAGGACTGTGTCCTGGCCAGATCCCAGGAAGAAGAATCCACCTGCTTGCAAGGCCTGGGCCTGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236462.2
3UTR GCA 90 bp AAATGGGCTCGCTCCATGCCAGCTCCTGGCTGCTGGAGGCCTTTCTaGCCAGTGGGGATGGTCTCTCCCAATGGCCCGGAAGCATCACTC +
Preference number: 1 (lower is better)
Translates to: KWARSMPAPGCWRPF*PVGMVSPNGPEASL
Trigger: GAGTGATGCTTCCGGGCCATTGGGAGAGACCATCCCCACTGGGCAGAAAGGCCTCCAGCAGCCAGGAGCTGGCATGGAGCGAGCCCATTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
3UTR CCA 90 bp CCATGCCAGCTCCTGGCTGCTGGAGGCCTTTCTGCCCAGTGGGGATaGTCTCTCCCAATGGCCCGGAAGCATCACTCAATTGAATCTGGG +
Preference number: 1 (lower is better)
Translates to: PCQLLAAGGLSAQWG*SLPMARKHHSIESG
Trigger: CCCAGATTCAATTGAGTGATGCTTCCGGGCCATTGGGAGAGACCATCCCCACTGGGCAGAAAGGCCTCCAGCAGCCAGGAGCTGGCATGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
3UTR CCA 90 bp AAGCAGGATATAAAATGGGCTCGCTCCATGCCAGCTCCTGGCTGCTaGAGGCCTTTCTGCCCAGTGGGGATGGTCTCTCCCAATGGCCCG +
Preference number: 1 (lower is better)
Translates to: KQDIKWARSMPAPGC*RPFCPVGMVSPNGP
Trigger: CGGGCCATTGGGAGAGACCATCCCCACTGGGCAGAAAGGCCTCCAGCAGCCAGGAGCTGGCATGGAGCGAGCCCATTTTATATCCTGCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
3UTR GCA 90 bp GTCAAGCAGGATATAAAATGGGCTCGCTCCATGCCAGCTCCTGGCTaGTGGAGGCCTTTCTGCCCAGTGGGGATGGTCTCTCCCAATGGC +
Preference number: 1 (lower is better)
Translates to: VKQDIKWARSMPAPG*WRPFCPVGMVSPNG
Trigger: GCCATTGGGAGAGACCATCCCCACTGGGCAGAAAGGCCTCCAGCAGCCAGGAGCTGGCATGGAGCGAGCCCATTTTATATCCTGCTTGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
3UTR CCA 90 bp ACAGCTTGGGGCTCTGAGACTCCAGGCCCAGGCCTTGCAAGCAGGTaGATTCTTCTTCCTGGGATCTGGCCAGGACACAGTCCTCATGCT +
Preference number: 1 (lower is better)
Translates to: TAWGSETPGPGLASR*ILLPGIWPGHSPHA
Trigger: AGCATGAGGACTGTGTCCTGGCCAGATCCCAGGAAGAAGAATCCACCTGCTTGCAAGGCCTGGGCCTGGAGTCTCAGAGCCCCAAGCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236462.2
3UTR CCA 90 bp ACAGGTCAAGCAGGATATAAAATGGGCTCGCTCCATGCCAGCTCCTaGCTGCTGGAGGCCTTTCTGCCCAGTGGGGATGGTCTCTCCCAA +
Preference number: 1 (lower is better)
Translates to: TGQAGYKMGSLHASS*LLEAFLPSGDGLSQ
Trigger: TTGGGAGAGACCATCCCCACTGGGCAGAAAGGCCTCCAGCAGCCAGGAGCTGGCATGGAGCGAGCCCATTTTATATCCTGCTTGACCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
3UTR CCA 90 bp AGAGGGTTGACCCTCCTAAGGTCACAGGTCAAGCAGGATATAAAATaGGCTCGCTCCATGCCAGCTCCTGGCTGCTGGAGGCCTTTCTGC +
Preference number: 1 (lower is better)
Translates to: RGLTLLRSQVKQDIK*ARSMPAPGCWRPFC
Trigger: GCAGAAAGGCCTCCAGCAGCCAGGAGCTGGCATGGAGCGAGCCCATTTTATATCCTGCTTGACCTGTGACCTTAGGAGGGTCAACCCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
3UTR CCA 90 bp CCACTGCAATGTGCTCCTGGCACCAGTGCAGAACCTTCAGAGACTTaGCACCACGTGTATTTCTATGTCAACCAGAGGCAGCCAGGGAGA +
Preference number: 1 (lower is better)
Translates to: PLQCAPGTSAEPSET*HHVYFYVNQRQPGR
Trigger: TCTCCCTGGCTGCCTCTGGTTGACATAGAAATACACGTGGTGCCAAGTCTCTGAAGGTTCTGCACTGGTGCCAGGAGCACATTGCAGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
3UTR TCA 90 bp CTCCTTTCCAGGGGATGTCTAGATATGGCAGTGGCCTGTCAGAAGTaGGGCAGGATCTGGGATTCCTGGAGCTACCTGTGGGGATTTGAA +
Preference number: 1 (lower is better)
Translates to: LLSRGCLDMAVACQK*GRIWDSWSYLWGFE
Trigger: TTCAAATCCCCACAGGTAGCTCCAGGAATCCCAGATCCTGCCTCACTTCTGACAGGCCACTGCCATATCTAGACATCCCCTGGAAAGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
3UTR GCA 90 bp CCCTCCTCACAGCCCAGTACCACTGCAATGTGCTCCTGGCACCAGTaGAGAACCTTCAGAGACTTGGCACCACGTGTATTTCTATGTCAA +
Preference number: 1 (lower is better)
Translates to: PSSQPSTTAMCSWHQ*RTFRDLAPRVFLCQ
Trigger: TTGACATAGAAATACACGTGGTGCCAAGTCTCTGAAGGTTCTGCACTGGTGCCAGGAGCACATTGCAGTGGTACTGGGCTGTGAGGAGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
3UTR CCA 90 bp ACAGCTTGGGGCTCTGAGACTCCAGGCCCAGGCCTTGCAAGCAGGTaGATTCTTCTTCCTGGGATCTCGAGAAACCAAATACAAATTCAA +
Preference number: 1 (lower is better)
Translates to: TAWGSETPGPGLASR*ILLPGISRNQIQIQ
Trigger: TTGAATTTGTATTTGGTTTCTCGAGATCCCAGGAAGAAGAATCCACCTGCTTGCAAGGCCTGGGCCTGGAGTCTCAGAGCCCCAAGCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
3UTR TCA 90 bp TGGGCAGGATGCAGCGTGCGACCAAAGTTACGGAAGATTGTCCCTTaGATCACTAAGGCAAACCTCATTGTGTGTCATTTTTACATAGAG +
Preference number: 1 (lower is better)
Translates to: WAGCSVRPKLRKIVP*ITKANLIVCHFYIE
Trigger: CTCTATGTAAAAATGACACACAATGAGGTTTGCCTTAGTGATTCAAGGGACAATCTTCCGTAACTTTGGTCGCACGCTGCATCCTGCCCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
3UTR GCA 90 bp AATAGGCCAGAAAATTATCTGAGCATTTCTGGGCAGGATGCAGCGTaGGACCAAAGTTACGGAAGATTGTCCCTTGAATCACTAAGGCAA +
Preference number: 1 (lower is better)
Translates to: NRPENYLSISGQDAA*DQSYGRLSLESLRQ
Trigger: TTGCCTTAGTGATTCAAGGGACAATCTTCCGTAACTTTGGTCGCACGCTGCATCCTGCCCAGAAATGCTCAGATAATTTTCTGGCCTATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
3UTR-3UTR CCA 90 bp CGCACAGCTTGGGGCTCTGAGACTCCAGGCCCAGGCCTTGCAAGCAGGTGGATTGGGGAGCCAGGCAGGTaGTGGCTGTTAGCCCCATCC +
Preference number: 2 (lower is better)
Translates to: RTAWGSETPGPGLASRWIGEPGR*WLLAPS
Trigger: GGATGGGGCTAACAGCCACCACCTGCCTGGCTCCCC...AATCCACCTGCTTGCAAGGCCTGGGCCTGGAGTCTCAGAGCCCCAAGCTGTGCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
3UTR-3UTR CCA 90 bp CCCCTGGGTCCCTCTGTTGGTTCTGAGTCTGGTGCAGCTACAGCCGCTTGGCTGTTCGAGCCCACTGGATaGGGCAGGGCAGGCCTTAGA +
Preference number: 2 (lower is better)
Translates to: PLGPSVGSESGAATAAWLFEPTG*GRAGLR
Trigger: TCTAAGGCCTGCCCTGCCCCATCCAGTGGGCTCGAA...CAGCCAAGCGGCTGTAGCTGCACCAGACTCAGAACCAACAGAGGGACCCAGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
3UTR-3UTR CCA 90 bp CCCCTGGGTCCCTCTGTTGGTTCTGAGTCTGGTGCAGCTACAGCCGCTTGGCTGTGGACTGTCATCTGGTaGCACTGGCAGGCAGGGGCT +
Preference number: 2 (lower is better)
Translates to: PLGPSVGSESGAATAAWLWTVIW*HWQAGA
Trigger: AGCCCCTGCCTGCCAGTGCCACCAGATGACAGTCCA...CAGCCAAGCGGCTGTAGCTGCACCAGACTCAGAACCAACAGAGGGACCCAGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
3UTR CAA 90 bp CCCTGGTGGACTGTCATCTGGTGGCACTGGCAGGCAGGGGCTCCCTaGGGAGCTTCAGGAGGGATAGCGTCTACTGTCTTCTCTGGCAGT +
Preference number: 2 (lower is better)
Translates to: PWWTVIWWHWQAGAP*GASGGIASTVFSGS
Trigger: ACTGCCAGAGAAGACAGTAGACGCTATCCCTCCTGAAGCTCCCAAGGGAGCCCCTGCCTGCCAGTGCCACCAGATGACAGTCCACCAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
3UTR-3UTR CCA 90 bp CAGGCAGGGGCTCCCTTGGGAGCTTCAGGAGGGATAGCGTCTACTGTCTTCTCTAAAGTTCGAGCCCACTaGATGGGGCAGGGCAGGCCT +
Preference number: 2 (lower is better)
Translates to: QAGAPLGASGGIASTVFSKVRAH*MGQGRP
Trigger: AGGCCTGCCCTGCCCCATCCAGTGGGCTCGAACTTT...AGAGAAGACAGTAGACGCTATCCCTCCTGAAGCTCCCAAGGGAGCCCCTGCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
3UTR CAA 90 bp CGTGGACCCGCACAGCTTGGGGCTCTGAGACTCCAGGCCCAGGCCTaGCAAGCAGGTGGATTCTTCTTCCTGGGATCTCGAGAAACCAAA +
Preference number: 2 (lower is better)
Translates to: RGPAQLGALRLQAQA*QAGGFFFLGSRETK
Trigger: TTTGGTTTCTCGAGATCCCAGGAAGAAGAATCCACCTGCTTGCAAGGCCTGGGCCTGGAGTCTCAGAGCCCCAAGCTGTGCGGGTCCACG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
3UTR-3UTR CCA 90 bp TGGGATTCCTGGAGCTACCTGTGGGGATTTGAAAGCCAGGAAGGCCTAGCCTATGCAGCCAGGGAGAGGTaGGGGTTCCAAACCCTCAGG +
Preference number: 2 (lower is better)
Translates to: WDSWSYLWGFESQEGLAYAARER*GFQTLR
Trigger: CCTGAGGGTTTGGAACCCCCACCTCTCCCTGGCTGC...ATAGGCTAGGCCTTCCTGGCTTTCAAATCCCCACAGGTAGCTCCAGGAATCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
3UTR-3UTR CCA 90 bp GCTGATGTCCACATGGAGGCGATGAAACCCACTCCAGCAAGAGAGACAGTCTCCCTCCATGCCAGCTCCTaGCTGCTGGAGGCCTTTCTG +
Preference number: 2 (lower is better)
Translates to: ADVHMEAMKPTPARETVSLHASS*LLEAFL
Trigger: CAGAAAGGCCTCCAGCAGCCAGGAGCTGGCATGGAG...GGAGACTGTCTCTCTTGCTGGAGTGGGTTTCATCGCCTCCATGTGGACATCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
3UTR-3UTR CCA 90 bp TGGGATTCCTGGAGCTACCTGTGGGGATTTGAAAGCCAGGAAGGCCTAGCCTATTTCGAGCCCACTGGATaGGGCAGGGCAGGCCTTAGA +
Preference number: 2 (lower is better)
Translates to: WDSWSYLWGFESQEGLAYFEPTG*GRAGLR
Trigger: TCTAAGGCCTGCCCTGCCCCATCCAGTGGGCTCGAA...ATAGGCTAGGCCTTCCTGGCTTTCAAATCCCCACAGGTAGCTCCAGGAATCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
3UTR-3UTR CCA 90 bp CAGGCAGGGGCTCCCTTGGGAGCTTCAGGAGGGATAGCGTCTACTGTCTTCTCTGTGGATTCTTCTTCCTaGGATCTGGCCAGGACACAG +
Preference number: 2 (lower is better)
Translates to: QAGAPLGASGGIASTVFSVDSSS*DLARTQ
Trigger: CTGTGTCCTGGCCAGATCCCAGGAAGAAGAATCCAC...AGAGAAGACAGTAGACGCTATCCCTCCTGAAGCTCCCAAGGGAGCCCCTGCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236462.2
3UTR CAA 90 bp CTGGTGCAGCTACAGCCGCTTGGCTGCTGGGGTAAAGTGTGCATATaGGCGACTGTCTGGACTGCAGACAGGAATTTAAGAGGCAGCTGC +
Preference number: 2 (lower is better)
Translates to: LVQLQPLGCWGKVCI*ATVWTADRNLRGSC
Trigger: GCAGCTGCCTCTTAAATTCCTGTCTGCAGTCCAGACAGTCGCCAATATGCACACTTTACCCCAGCAGCCAAGCGGCTGTAGCTGCACCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
3UTR-3UTR GCA 90 bp GAGCATTTCTGGGCAGGATGCAGCGTGCGACCAAAGTTACGGAAGATTGTCCCTACAGCCCAGTACCACTaGAATGTGCTCCTGGCACCA +
Preference number: 2 (lower is better)
Translates to: EHFWAGCSVRPKLRKIVPTAQYH*NVLLAP
Trigger: TGGTGCCAGGAGCACATTGCAGTGGTACTGGGCTGT...AGGGACAATCTTCCGTAACTTTGGTCGCACGCTGCATCCTGCCCAGAAATGCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
3UTR-3UTR GCA 90 bp CTGGGCAGGATGCAGCGTGCGACCAAAGTTACGGAAGATTGTCCCTTGAATCACACAGCCCAGTACCACTaGAATGTGCTCCTGGCACCA +
Preference number: 2 (lower is better)
Translates to: LGRMQRATKVTEDCPLNHTAQYH*NVLLAP
Trigger: TGGTGCCAGGAGCACATTGCAGTGGTACTGGGCTGT...GTGATTCAAGGGACAATCTTCCGTAACTTTGGTCGCACGCTGCATCCTGCCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
3UTR CAA 90 bp CAATGGCCCGGAAGCATCACTCAATTGAATCTGGGACCTCTGAGCTaGAACCTGACTCCAAAAAGCGGTGTTGGGAGGGACTCCCCCATA +
Preference number: 2 (lower is better)
Translates to: QWPGSITQLNLGPLS*NLTPKSGVGRDSPI
Trigger: TATGGGGGAGTCCCTCCCAACACCGCTTTTTGGAGTCAGGTTCAAGCTCAGAGGTCCCAGATTCAATTGAGTGATGCTTCCGGGCCATTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
3UTR-3UTR GCA 90 bp GAGCATTTCTGGGCAGGATGCAGCGTGCGACCAAAGTTACGGAAGATTGTCCCTCCTACAAAAAGGAGATaGTGTCCCTCGAAGGCCAGG +
Preference number: 2 (lower is better)
Translates to: EHFWAGCSVRPKLRKIVPPTKRR*CPSKAR
Trigger: CCTGGCCTTCGAGGGACAGCATCTCCTTTTTGTAGG...AGGGACAATCTTCCGTAACTTTGGTCGCACGCTGCATCCTGCCCAGAAATGCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
3UTR-3UTR CCA 90 bp GGGAGCTTCAGGAGGGATAGCGTCTACTGTCTTCTCTGGCAGTTTTGCGTTTGCTCCACGGGAGACCTGTaGTCAAATATGGAAAGGGGG +
Preference number: 2 (lower is better)
Translates to: GSFRRDSVYCLLWQFCVCSTGDL*SNMERG
Trigger: CCCCCTTTCCATATTTGACCACAGGTCTCCCGTGGA...GCAAACGCAAAACTGCCAGAGAAGACAGTAGACGCTATCCCTCCTGAAGCTCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
3UTR-3UTR CCA 90 bp CGAGAAACCAAATACAAATTCAAGAAAGCGTGGGCCAGCAAAGTTCCCAACCCAAAAGTTCGAGCCCACTaGATGGGGCAGGGCAGGCCT +
Preference number: 2 (lower is better)
Translates to: RETKYKFKKAWASKVPNPKVRAH*MGQGRP
Trigger: AGGCCTGCCCTGCCCCATCCAGTGGGCTCGAACTTT...TGGGTTGGGAACTTTGCTGGCCCACGCTTTCTTGAATTTGTATTTGGTTTCTCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
3UTR-3UTR CCA 90 bp CTGGGCAGGATGCAGCGTGCGACCAAAGTTACGGAAGATTGTCCCTTGAATCACAGGATCTGGGATTCCTaGAGCTACCTGTGGGGATTT +
Preference number: 2 (lower is better)
Translates to: LGRMQRATKVTEDCPLNHRIWDS*SYLWGF
Trigger: AAATCCCCACAGGTAGCTCCAGGAATCCCAGATCCT...GTGATTCAAGGGACAATCTTCCGTAACTTTGGTCGCACGCTGCATCCTGCCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
3UTR-3UTR TCA 90 bp GGGCAGGATGCAGCGTGCGACCAAAGTTACGGAAGATTGTCCCTTGAATCACTACAGAAGCTAACATGCTaGTGTCCACATGGAGGCGAT +
Preference number: 2 (lower is better)
Translates to: GQDAACDQSYGRLSLESLQKLTC*CPHGGD
Trigger: ATCGCCTCCATGTGGACATCAGCATGTTAGCTTCTG...TAGTGATTCAAGGGACAATCTTCCGTAACTTTGGTCGCACGCTGCATCCTGCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
3UTR-3UTR CCA 90 bp ATAAATAGGCCAGAAAATTATCTGAGCATTTCTGGGCAGGATGCAGCGTGCGACGGCCTTGCAAGCAGGTaGATTCTTCTTCCTGGGATC +
Preference number: 2 (lower is better)
Translates to: INRPENYLSISGQDAACDGLASR*ILLPGI
Trigger: GATCCCAGGAAGAAGAATCCACCTGCTTGCAAGGCC...GTCGCACGCTGCATCCTGCCCAGAAATGCTCAGATAATTTTCTGGCCTATTTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
3UTR-3UTR TCA 90 bp ATAAATAGGCCAGAAAATTATCTGAGCATTTCTGGGCAGGATGCAGCGTGCGACTTAGCAAAAGGGGTTTaGACACTGAGGGAGTGTGGG +
Preference number: 2 (lower is better)
Translates to: INRPENYLSISGQDAACDLAKGV*TLRECG
Trigger: CCCACACTCCCTCAGTGTTCAAACCCCTTTTGCTAA...GTCGCACGCTGCATCCTGCCCAGAAATGCTCAGATAATTTTCTGGCCTATTTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
3UTR-3UTR CCA 90 bp CTTGGGAGCTTCAGGAGGGATAGCGTCTACTGTCTTCTCTGGCAGTTTTGCGTTGAACCTTCAGAGACTTaGCACCACGTGTATTTCTAT +
Preference number: 2 (lower is better)
Translates to: LGSFRRDSVYCLLWQFCVEPSET*HHVYFY
Trigger: ATAGAAATACACGTGGTGCCAAGTCTCTGAAGGTTC...AACGCAAAACTGCCAGAGAAGACAGTAGACGCTATCCCTCCTGAAGCTCCCAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
3UTR-3UTR CCA 90 bp ATAAATAGGCCAGAAAATTATCTGAGCATTTCTGGGCAGGATGCAGCGTGCGACCAAAGAGCTGAGGCCTaGATGACTAGGTTCTGTGAC +
Preference number: 2 (lower is better)
Translates to: INRPENYLSISGQDAACDQRAEA*MTRFCD
Trigger: GTCACAGAACCTAGTCATCCAGGCCTCAGCTCTTTG...GTCGCACGCTGCATCCTGCCCAGAAATGCTCAGATAATTTTCTGGCCTATTTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
3UTR-3UTR GCA 90 bp GGGAGCTTCAGGAGGGATAGCGTCTACTGTCTTCTCTGGCAGTTTTGCGTTTGCTTTTCCCTTTGTGTTTaGAAACTAGAAAGTTCGAGC +
Preference number: 2 (lower is better)
Translates to: GSFRRDSVYCLLWQFCVCFSLCV*KLESSS
Trigger: GCTCGAACTTTCTAGTTTGCAAACACAAAGGGAAAA...GCAAACGCAAAACTGCCAGAGAAGACAGTAGACGCTATCCCTCCTGAAGCTCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
3UTR CAA 90 bp AGCATTTCTGGGCAGGATGCAGCGTGCGACCAAAGTTACGGAAGATaGTCCCTTGAATCACTAAGGCAAACCTCATTGTGTGTCATTTTT +
Preference number: 2 (lower is better)
Translates to: SISGQDAACDQSYGR*SLESLRQTSLCVIF
Trigger: AAAAATGACACACAATGAGGTTTGCCTTAGTGATTCAAGGGACAATCTTCCGTAACTTTGGTCGCACGCTGCATCCTGCCCAGAAATGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
3UTR-3UTR CCA 90 bp TTTGCGTTTGCGTTTGCACATGAAGAAGCCAAGGCAGTTGATCTAGGAAGAGCTGAACCTTCAGAGACTTaGCACCACGTGTATTTCTAT +
Preference number: 2 (lower is better)
Translates to: FAFAFAHEEAKAVDLGRAEPSET*HHVYFY
Trigger: ATAGAAATACACGTGGTGCCAAGTCTCTGAAGGTTC...AGCTCTTCCTAGATCAACTGCCTTGGCTTCTTCATGTGCAAACGCAAACGCAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
3UTR CAA 90 bp CCAACCATTTGTTTCAAGTGCTTGATCATACAGTACTCAGCATCTTaGGATATTTTACAATGTACAATTCCAAACGGCAGCCCAGGAAAG +
Preference number: 2 (lower is better)
Translates to: PTICFKCLIIQYSAS*DILQCTIPNGSPGK
Trigger: CTTTCCTGGGCTGCCGTTTGGAATTGTACATTGTAAAATATCCAAAGATGCTGAGTACTGTATGATCAAGCACTTGAAACAAATGGTTGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
3UTR CCA 72 bp GAAGATCCTCCCTGGTGGACTGTCATCTGGTGGCACTaGCAGGCAGGGGCTCCCTTGGGAGCTTCAGGAGGG +
Preference number: 3 (lower is better)
Translates to: EDPPWWTVIWWH*QAGAPLGASGG
Trigger: CCCTCCTGAAGCTCCCAAGGGAGCCCCTGCCTGCCAGTGCCACCAGATGACAGTCCACCAGGGAGGATCTTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
3UTR CCA 72 bp CTCCCCCATAGGGTCAAACGGCTCAACCAAGGTACCTaGCCAGGACACAGTCCTCATGCTAGCTCCTCCCGG +
Preference number: 3 (lower is better)
Translates to: LPHRVKRLNQGT*PGHSPHASSSR
Trigger: CCGGGAGGAGCTAGCATGAGGACTGTGTCCTGGCCAGGTACCTTGGTTGAGCCGTTTGACCCTATGGGGGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
3UTR CCA 72 bp CTCCTGGCTGCTGGAGGCCTTTCTGCCCAGTGGGGATaGTCTCTCCCAATGGCCCGGAAGCATCACTCAATT +
Preference number: 3 (lower is better)
Translates to: LLAAGGLSAQWG*SLPMARKHHSI
Trigger: AATTGAGTGATGCTTCCGGGCCATTGGGAGAGACCATCCCCACTGGGCAGAAAGGCCTCCAGCAGCCAGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
3UTR CCA 72 bp GCAGGATATAAAATGGGCTCGCTCCATGCCAGCTCCTaGCTGCTGGAGGCCTTTCTGCCCAGTGGGGATGGT +
Preference number: 3 (lower is better)
Translates to: AGYKMGSLHASS*LLEAFLPSGDG
Trigger: ACCATCCCCACTGGGCAGAAAGGCCTCCAGCAGCCAGGAGCTGGCATGGAGCGAGCCCATTTTATATCCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
3UTR CCA 72 bp GGCCTTGCAAGCAGGTGGATTCTTCTTCCTGGGATCTaGCCAGGACACAGTCCTCATGCTAGCTCCTCCCGG +
Preference number: 3 (lower is better)
Translates to: GLASRWILLPGI*PGHSPHASSSR
Trigger: CCGGGAGGAGCTAGCATGAGGACTGTGTCCTGGCCAGATCCCAGGAAGAAGAATCCACCTGCTTGCAAGGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236462.2
3UTR GCA 72 bp TCGGCAGAATGCTCCCTCCTCACAGCCCAGTACCACTaGAATGTGCTCCTGGCACCAGTGCAGAACCTTCAG +
Preference number: 3 (lower is better)
Translates to: SAECSLLTAQYH*NVLLAPVQNLQ
Trigger: CTGAAGGTTCTGCACTGGTGCCAGGAGCACATTGCAGTGGTACTGGGCTGTGAGGAGGGAGCATTCTGCCGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
3UTR GCA 72 bp GATATAAAATGGGCTCGCTCCATGCCAGCTCCTGGCTaGTGGAGGCCTTTCTGCCCAGTGGGGATGGTCTCT +
Preference number: 3 (lower is better)
Translates to: DIKWARSMPAPG*WRPFCPVGMVS
Trigger: AGAGACCATCCCCACTGGGCAGAAAGGCCTCCAGCAGCCAGGAGCTGGCATGGAGCGAGCCCATTTTATATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
3UTR CCA 72 bp GAGGCCTTTCTGCCCAGTGGGGATGGTCTCTCCCAATaGCCCGGAAGCATCACTCAATTGAATCTGGGACCT +
Preference number: 3 (lower is better)
Translates to: EAFLPSGDGLSQ*PGSITQLNLGP
Trigger: AGGTCCCAGATTCAATTGAGTGATGCTTCCGGGCCATTGGGAGAGACCATCCCCACTGGGCAGAAAGGCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
3UTR CCA 72 bp ACCCTCCTAAGGTCACAGGTCAAGCAGGATATAAAATaGGCTCGCTCCATGCCAGCTCCTGGCTGCTGGAGG +
Preference number: 3 (lower is better)
Translates to: TLLRSQVKQDIK*ARSMPAPGCWR
Trigger: CCTCCAGCAGCCAGGAGCTGGCATGGAGCGAGCCCATTTTATATCCTGCTTGACCTGTGACCTTAGGAGGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
3UTR-3UTR CAA 90 bp TGGGATTCCTGGAGCTACCTGTGGGGATTTGAAAGCCAGGAAGGCCTAGCCTATCTGAGGCACAGAGGGTaGACCCTCCTAAGGTCACAG +
Preference number: 3 (lower is better)
Translates to: WDSWSYLWGFESQEGLAYLRHRG*TLLRSQ
Trigger: CTGTGACCTTAGGAGGGTCAACCCTCTGTGCCTCAG...ATAGGCTAGGCCTTCCTGGCTTTCAAATCCCCACAGGTAGCTCCAGGAATCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
3UTR TCA 72 bp AGGGGATGTCTAGATATGGCAGTGGCCTGTCAGAAGTaGGGCAGGATCTGGGATTCCTGGAGCTACCTGTGG +
Preference number: 3 (lower is better)
Translates to: RGCLDMAVACQK*GRIWDSWSYLW
Trigger: CCACAGGTAGCTCCAGGAATCCCAGATCCTGCCTCACTTCTGACAGGCCACTGCCATATCTAGACATCCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
3UTR GCA 72 bp TTGGTTCTGAGTCTGGTGCAGCTACAGCCGCTTGGCTaGTGGGGTAAAGTGTGCATATTGGCGACTGTCTGG +
Preference number: 3 (lower is better)
Translates to: LVLSLVQLQPLG*WGKVCILATVW
Trigger: CCAGACAGTCGCCAATATGCACACTTTACCCCAGCAGCCAAGCGGCTGTAGCTGCACCAGACTCAGAACCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
3UTR CCA 72 bp GTTCTGAGTCTGGTGCAGCTACAGCCGCTTGGCTGCTaGGGTAAAGTGTGCATATTGGCGACTGTCTGGACT +
Preference number: 3 (lower is better)
Translates to: VLSLVQLQPLGC*GKVCILATVWT
Trigger: AGTCCAGACAGTCGCCAATATGCACACTTTACCCCAGCAGCCAAGCGGCTGTAGCTGCACCAGACTCAGAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
3UTR TCA 72 bp AACCTCAACTCAAGGAGCAAAGAGCTGAGGCCTGGATaGCTAGGTTCTGTGACATTTGGAGGGGTGGGGGTG +
Preference number: 3 (lower is better)
Translates to: NLNSRSKELRPG*LGSVTFGGVGV
Trigger: CACCCCCACCCCTCCAAATGTCACAGAACCTAGTCATCCAGGCCTCAGCTCTTTGCTCCTTGAGTTGAGGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
3UTR GCA 72 bp CAGCCCAGTACCACTGCAATGTGCTCCTGGCACCAGTaGAGAACCTTCAGAGACTTGGCACCACGTGTATTT +
Preference number: 3 (lower is better)
Translates to: QPSTTAMCSWHQ*RTFRDLAPRVF
Trigger: AAATACACGTGGTGCCAAGTCTCTGAAGGTTCTGCACTGGTGCCAGGAGCACATTGCAGTGGTACTGGGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
3UTR CCA 72 bp GTATTTCTATGTCAACCAGAGGCAGCCAGGGAGAGGTaGGGGTTCCAAACCCTCAGGGAAGAGATGTCTAGC +
Preference number: 3 (lower is better)
Translates to: VFLCQPEAARER*GFQTLREEMSS
Trigger: GCTAGACATCTCTTCCCTGAGGGTTTGGAACCCCCACCTCTCCCTGGCTGCCTCTGGTTGACATAGAAATAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
3UTR CCA 72 bp TGTGCTCCTGGCACCAGTGCAGAACCTTCAGAGACTTaGCACCACGTGTATTTCTATGTCAACCAGAGGCAG +
Preference number: 3 (lower is better)
Translates to: CAPGTSAEPSET*HHVYFYVNQRQ
Trigger: CTGCCTCTGGTTGACATAGAAATACACGTGGTGCCAAGTCTCTGAAGGTTCTGCACTGGTGCCAGGAGCACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
3UTR CCA 72 bp GAGAAACCTCAACTCAAGGAGCAAAGAGCTGAGGCCTaGATGACTAGGTTCTGTGACATTTGGAGGGGTGGG +
Preference number: 3 (lower is better)
Translates to: EKPQLKEQRAEA*MTRFCDIWRGG
Trigger: CCCACCCCTCCAAATGTCACAGAACCTAGTCATCCAGGCCTCAGCTCTTTGCTCCTTGAGTTGAGGTTTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
3UTR TCA 72 bp CAGGATCTGGGATTCCTGGAGCTACCTGTGGGGATTTaGAAGCCAGGAAGGCCTAGCCTATCTTTCTCTGAT +
Preference number: 3 (lower is better)
Translates to: QDLGFLELPVGI*KPGRPSLSFSD
Trigger: ATCAGAGAAAGATAGGCTAGGCCTTCCTGGCTTTCAAATCCCCACAGGTAGCTCCAGGAATCCCAGATCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
3UTR CCA 72 bp GGATCTCGAGAAACCAAATACAAATTCAAGAAAGCGTaGGCCAGCAAAGTTCCCAACCCAGAACCAGCCCGA +
Preference number: 3 (lower is better)
Translates to: GSRETKYKFKKA*ASKVPNPEPAR
Trigger: TCGGGCTGGTTCTGGGTTGGGAACTTTGCTGGCCCACGCTTTCTTGAATTTGTATTTGGTTTCTCGAGATCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
3UTR CCA 72 bp AGGCCCAGGCCTTGCAAGCAGGTGGATTCTTCTTCCTaGGATCTCGAGAAACCAAATACAAATTCAAGAAAG +
Preference number: 3 (lower is better)
Translates to: RPRPCKQVDSSS*DLEKPNTNSRK
Trigger: CTTTCTTGAATTTGTATTTGGTTTCTCGAGATCCCAGGAAGAAGAATCCACCTGCTTGCAAGGCCTGGGCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
3UTR GCA 72 bp GAAAATTATCTGAGCATTTCTGGGCAGGATGCAGCGTaGGACCAAAGTTACGGAAGATTGTCCCTTGAATCA +
Preference number: 3 (lower is better)
Translates to: ENYLSISGQDAA*DQSYGRLSLES
Trigger: TGATTCAAGGGACAATCTTCCGTAACTTTGGTCGCACGCTGCATCCTGCCCAGAAATGCTCAGATAATTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
3UTR-3UTR CAA 90 bp ACCTACAAAAAGGAGATGCTGTCCCTCGAAGGCCAGGAGAATTGCATCTCAGCTATTTTCCCTTTGTGTTaGCAAACTAGAAAGTTCGAG +
Preference number: 3 (lower is better)
Translates to: TYKKEMLSLEGQENCISAIFPLC*QTRKFE
Trigger: CTCGAACTTTCTAGTTTGCAAACACAAAGGGAAAAT...AGCTGAGATGCAATTCTCCTGGCCTTCGAGGGACAGCATCTCCTTTTTGTAGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
3UTR TCA 72 bp TGCAGCGTGCGACCAAAGTTACGGAAGATTGTCCCTTaGATCACTAAGGCAAACCTCATTGTGTGTCATTTT +
Preference number: 3 (lower is better)
Translates to: CSVRPKLRKIVP*ITKANLIVCHF
Trigger: AAAATGACACACAATGAGGTTTGCCTTAGTGATTCAAGGGACAATCTTCCGTAACTTTGGTCGCACGCTGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
3UTR-3UTR CAA 90 bp ACTGTCTTCTCTGGCAGTTTTGCGTTTGCGTTTGCACATGAAGAAGCCAAGGCAATTTTCCCTTTGTGTTaGCAAACTAGAAAGTTCGAG +
Preference number: 3 (lower is better)
Translates to: TVFSGSFAFAFAHEEAKAIFPLC*QTRKFE
Trigger: CTCGAACTTTCTAGTTTGCAAACACAAAGGGAAAAT...TGCCTTGGCTTCTTCATGTGCAAACGCAAACGCAAAACTGCCAGAGAAGACAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR GCA 90 bp CCCCTGGGTCCCTCTGTTGGTTCTGAGTCTGGTGCAGCTACAGCCGCTTGGCTGGGAGGCACACGGCTGTaGCGCCCAGGTGGCCACCCA +
Preference number: 4 (lower is better)
Translates to: PLGPSVGSESGAATAAWLGGTRL*RPGGHP
Trigger: TGGGTGGCCACCTGGGCGGCACAGCCGTGTGCCTCC...CAGCCAAGCGGCTGTAGCTGCACCAGACTCAGAACCAACAGAGGGACCCAGGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp GTCTCGTGGACCCGCACAGCTTGGGGCTCTGAGACTCCAGGCCCAGGCCTTGCACGGATCACTCCCAAATaGCCAGGGCTTCCGGGCTGG +
Preference number: 4 (lower is better)
Translates to: VSWTRTAWGSETPGPGLARITPK*PGLPGW
Trigger: CCAGCCCGGAAGCCCTGGCCATTTGGGAGTGATCCG...TGCAAGGCCTGGGCCTGGAGTCTCAGAGCCCCAAGCTGTGCGGGTCCACGAGAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp GCCCTCCCCTGGGTCCCTCTGTTGGTTCTGAGTCTGGTGCAGCTACAGCCGCTTCACCAGCGGCCAGGGTaGGAAGAGGCTCCCCAGGTG +
Preference number: 4 (lower is better)
Translates to: ALPWVPLLVLSLVQLQPLHQRPG*EEAPQV
Trigger: CACCTGGGGAGCCTCTTCCCACCCTGGCCGCTGGTG...AAGCGGCTGTAGCTGCACCAGACTCAGAACCAACAGAGGGACCCAGGGGAGGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR GCA 90 bp GCAGGGCAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGGACCAGACCACGCCGGGGTCGTaGCATGCGGCAGCTCTGCCG +
Preference number: 4 (lower is better)
Translates to: AGQALEGLKTGFGSRVDQTTPGS*HAAALP
Trigger: CGGCAGAGCTGCCGCATGGCACGACCCCGGCGTGGT...CTGGTCCACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTGCCCTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp GGGATCTGGCCAGGACACAGTCCTCATGCTAGCTCCTCCCGGCCAGCTCGGCAGGTCTTGGAGGGGCTTTaGGGGCAGGTGATGTCCTGG +
Preference number: 4 (lower is better)
Translates to: GIWPGHSPHASSSRPARQVLEGL*GQVMSW
Trigger: CCAGGACATCACCTGCCCCCAAAGCCCCTCCAAGAC...CTGCCGAGCTGGCCGGGAGGAGCTAGCATGAGGACTGTGTCCTGGCCAGATCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp GTCTCGTGGACCCGCACAGCTTGGGGCTCTGAGACTCCAGGCCCAGGCCTTGCACTCTGCCGTTTGATGTaGCGGTGCAGGTGGTCGGAG +
Preference number: 4 (lower is better)
Translates to: VSWTRTAWGSETPGPGLALCRLM*RCRWSE
Trigger: CTCCGACCACCTGCACCGCCACATCAAACGGCAGAG...TGCAAGGCCTGGGCCTGGAGTCTCAGAGCCCCAAGCTGTGCGGGTCCACGAGAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR TCA 90 bp GCCCTCCCCTGGGTCCCTCTGTTGGTTCTGAGTCTGGTGCAGCTACAGCCGCTTGGCAGCTCTGCCGTTTaGTGTGGCGGTGCAGGTGGT +
Preference number: 4 (lower is better)
Translates to: ALPWVPLLVLSLVQLQPLGSSAV*CGGAGG
Trigger: ACCACCTGCACCGCCACATCAAACGGCAGAGCTGCC...AAGCGGCTGTAGCTGCACCAGACTCAGAACCAACAGAGGGACCCAGGGGAGGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR GCA 90 bp GCCCTCCCCTGGGTCCCTCTGTTGGTTCTGAGTCTGGTGCAGCTACAGCCGCTTGCCATGCGGCAGCTCTaGCGTTTGATGTGGCGGTGC +
Preference number: 4 (lower is better)
Translates to: ALPWVPLLVLSLVQLQPLAMRQL*RLMWRC
Trigger: GCACCGCCACATCAAACGGCAGAGCTGCCGCATGGC...AAGCGGCTGTAGCTGCACCAGACTCAGAACCAACAGAGGGACCCAGGGGAGGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR GCA 90 bp CTAGAAAGTTCGAGCCCACTGGATGGGGCAGGGCAGGCCTTAGAGGGACTTAAGGGAGGCACACGGCTGTaGCGCCCAGGTGGCCACCCA +
Preference number: 4 (lower is better)
Translates to: LESSSPLDGAGQALEGLKGGTRL*RPGGHP
Trigger: TGGGTGGCCACCTGGGCGGCACAGCCGTGTGCCTCC...CTTAAGTCCCTCTAAGGCCTGCCCTGCCCCATCCAGTGGGCTCGAACTTTCTAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp GGGATCTGGCCAGGACACAGTCCTCATGCTAGCTCCTCCCGGCCAGCTCGGCAGGGGCAGGTGATGTCCTaGGGGTCAGGCAAGTTTTCC +
Preference number: 4 (lower is better)
Translates to: GIWPGHSPHASSSRPARQGQVMS*GSGKFS
Trigger: GGAAAACTTGCCTGACCCCCAGGACATCACCTGCCC...CTGCCGAGCTGGCCGGGAGGAGCTAGCATGAGGACTGTGTCCTGGCCAGATCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000236462.2
CDS-3UTR GCA 90 bp GATGGGGCAGGGCAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGTGGCATCACGAAGGCTaGCTTGTCGGCGGAGGGGCC +
Preference number: 4 (lower is better)
Translates to: DGAGQALEGLKTGFGSRVWHHEG*LVGGGA
Trigger: GGCCCCTCCGCCGACAAGGCAGCCTTCGTGATGCCA...CACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTGCCCTGCCCCATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp CTAGAAAGTTCGAGCCCACTGGATGGGGCAGGGCAGGCCTTAGAGGGACTTAAGCACCAGCGGCCAGGGTaGGAAGAGGCTCCCCAGGTG +
Preference number: 4 (lower is better)
Translates to: LESSSPLDGAGQALEGLKHQRPG*EEAPQV
Trigger: CACCTGGGGAGCCTCTTCCCACCCTGGCCGCTGGTG...CTTAAGTCCCTCTAAGGCCTGCCCTGCCCCATCCAGTGGGCTCGAACTTTCTAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp GATGGGGCAGGGCAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGGTCGCCCAGCGCGGGTaGCATCACGAAGGCTGCCTT +
Preference number: 4 (lower is better)
Translates to: DGAGQALEGLKTGFGSRVVAQRG*HHEGCL
Trigger: AAGGCAGCCTTCGTGATGCCACCCGCGCTGGGCGAC...CACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTGCCCTGCCCCATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp CAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGGACCAGGGCCAGGGAAGTAGGGCCGAGTaGCGGCCACGTTCTCGGCCA +
Preference number: 4 (lower is better)
Translates to: QALEGLKTGFGSRVDQGQGSRAE*RPRSRP
Trigger: TGGCCGAGAACGTGGCCGCCACTCGGCCCTACTTCC...CTGGCCCTGGTCCACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp GATGGGGCAGGGCAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGCCAGGGGTCGGGCAATaGGAAGTAGGGCCGAGTGGC +
Preference number: 4 (lower is better)
Translates to: DGAGQALEGLKTGFGSRVPGVGQ*EVGPSG
Trigger: GCCACTCGGCCCTACTTCCCATTGCCCGACCCCTGG...CACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTGCCCTGCCCCATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp CAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGGACCAGGGCCAGCCAGGGGTCGGGCAATaGGAAGTAGGGCCGAGTGGC +
Preference number: 4 (lower is better)
Translates to: QALEGLKTGFGSRVDQGQPGVGQ*EVGPSG
Trigger: GCCACTCGGCCCTACTTCCCATTGCCCGACCCCTGG...CTGGCCCTGGTCCACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR TCA 90 bp GATGGGGCAGGGCAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGAGTCATTCTCTGCCTTaGTGGGGCCCAGCGGCCCAC +
Preference number: 4 (lower is better)
Translates to: DGAGQALEGLKTGFGSRVSHSLP*WGPAAH
Trigger: GTGGGCCGCTGGGCCCCATCAAGGCAGAGAATGACT...CACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTGCCCTGCCCCATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR GCA 90 bp CAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGGACCAGGGCCAGCGTTTGATGTGGCGGTaGAGGTGGTCGGAGCGCGTG +
Preference number: 4 (lower is better)
Translates to: QALEGLKTGFGSRVDQGQRLMWR*RWSERV
Trigger: CACGCGCTCCGACCACCTGCACCGCCACATCAAACG...CTGGCCCTGGTCCACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR GCA 90 bp AAGCGGTGTTGGGAGGGACTCCCCCATAGGGTCAAACGGCTCAACCAAGGTACCGCCATGCGGCAGCTCTaGCGTTTGATGTGGCGGTGC +
Preference number: 4 (lower is better)
Translates to: KRCWEGLPHRVKRLNQGTAMRQL*RLMWRC
Trigger: GCACCGCCACATCAAACGGCAGAGCTGCCGCATGGC...GGTACCTTGGTTGAGCCGTTTGACCCTATGGGGGAGTCCCTCCCAACACCGCTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
CDS-3UTR GCA 90 bp GATGGGGCAGGGCAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGGCCATGCGGCAGCTCTaGCGTTTGATGTGGCGGTGC +
Preference number: 4 (lower is better)
Translates to: DGAGQALEGLKTGFGSRVAMRQL*RLMWRC
Trigger: GCACCGCCACATCAAACGGCAGAGCTGCCGCATGGC...CACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTGCCCTGCCCCATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR GCA 90 bp GGGAGCTTCAGGAGGGATAGCGTCTACTGTCTTCTCTGGCAGTTTTGCGTTTGCACCACGCCGGGGTCGTaGCATGCGGCAGCTCTGCCG +
Preference number: 4 (lower is better)
Translates to: GSFRRDSVYCLLWQFCVCTTPGS*HAAALP
Trigger: CGGCAGAGCTGCCGCATGGCACGACCCCGGCGTGGT...GCAAACGCAAAACTGCCAGAGAAGACAGTAGACGCTATCCCTCCTGAAGCTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR GCA 90 bp CTGGGCAGGATGCAGCGTGCGACCAAAGTTACGGAAGATTGTCCCTTGAATCACACCACGCCGGGGTCGTaGCATGCGGCAGCTCTGCCG +
Preference number: 4 (lower is better)
Translates to: LGRMQRATKVTEDCPLNHTTPGS*HAAALP
Trigger: CGGCAGAGCTGCCGCATGGCACGACCCCGGCGTGGT...GTGATTCAAGGGACAATCTTCCGTAACTTTGGTCGCACGCTGCATCCTGCCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR GCA 90 bp CCCCTGGGTCCCTCTGTTGGTTCTGAGTCTGGTGCAGCTACAGCCGCTTGGCTGTGCGTCTCCTCGAACTaGCTTTCCAGCTCCTGCAGG +
Preference number: 4 (lower is better)
Translates to: PLGPSVGSESGAATAAWLCVSSN*LSSSCR
Trigger: CCTGCAGGAGCTGGAAAGGCAGTTCGAGGAGACGCA...CAGCCAAGCGGCTGTAGCTGCACCAGACTCAGAACCAACAGAGGGACCCAGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp TGGCCAGGACACAGTCCTCATGCTAGCTCCTCCCGGCCAGCTCGGCAGAATGCTCGGTACTCTTGCTCCTaGACCACCAGCAGCACGTCA +
Preference number: 4 (lower is better)
Translates to: WPGHSPHASSSRPARQNARYSCS*TTSSTS
Trigger: TGACGTGCTGCTGGTGGTCCAGGAGCAAGAGTACCG...AGCATTCTGCCGAGCTGGCCGGGAGGAGCTAGCATGAGGACTGTGTCCTGGCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp GTCTCGTGGACCCGCACAGCTTGGGGCTCTGAGACTCCAGGCCCAGGCCTTGCATCAGGCAAGTTTTCCTaGTCGGCAAAGTCCTCTGGG +
Preference number: 4 (lower is better)
Translates to: VSWTRTAWGSETPGPGLASGKFS*SAKSSG
Trigger: CCCAGAGGACTTTGCCGACCAGGAAAACTTGCCTGA...TGCAAGGCCTGGGCCTGGAGTCTCAGAGCCCCAAGCTGTGCGGGTCCACGAGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp CAGGCAGGGGCTCCCTTGGGAGCTTCAGGAGGGATAGCGTCTACTGTCTTCTCTCGGATCACTCCCAAATaGCCAGGGCTTCCGGGCTGG +
Preference number: 4 (lower is better)
Translates to: QAGAPLGASGGIASTVFSRITPK*PGLPGW
Trigger: CCAGCCCGGAAGCCCTGGCCATTTGGGAGTGATCCG...AGAGAAGACAGTAGACGCTATCCCTCCTGAAGCTCCCAAGGGAGCCCCTGCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp CAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGGACCAGGGCCAGCGGATCACTCCCAAATaGCCAGGGCTTCCGGGCTGG +
Preference number: 4 (lower is better)
Translates to: QALEGLKTGFGSRVDQGQRITPK*PGLPGW
Trigger: CCAGCCCGGAAGCCCTGGCCATTTGGGAGTGATCCG...CTGGCCCTGGTCCACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp GCAGGGCAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGGACCAGGTGGCCCACTGTCCATaGGCTGCTCAGGCAGCTGAG +
Preference number: 4 (lower is better)
Translates to: AGQALEGLKTGFGSRVDQVAHCP*AAQAAE
Trigger: CTCAGCTGCCTGAGCAGCCCATGGACAGTGGGCCAC...CTGGTCCACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTGCCCTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp CAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGGACCAGGGCCAGGTGGCCCACTGTCCATaGGCTGCTCAGGCAGCTGAG +
Preference number: 4 (lower is better)
Translates to: QALEGLKTGFGSRVDQGQVAHCP*AAQAAE
Trigger: CTCAGCTGCCTGAGCAGCCCATGGACAGTGGGCCAC...CTGGCCCTGGTCCACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp CGCACAGCTTGGGGCTCTGAGACTCCAGGCCCAGGCCTTGCAAGCAGGTGGATTACTGCTGAGAGGCCTTaGGCTTCAGCTTGCGCTCCT +
Preference number: 4 (lower is better)
Translates to: RTAWGSETPGPGLASRWITAERP*ASACAP
Trigger: AGGAGCGCAAGCTGAAGCCCAAGGCCTCTCAGCAGT...AATCCACCTGCTTGCAAGGCCTGGGCCTGGAGTCTCAGAGCCCCAAGCTGTGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR TCA 90 bp CTAGAAAGTTCGAGCCCACTGGATGGGGCAGGGCAGGCCTTAGAGGGACTTAAGGCTTGTCCTGCCTGGTaGAGCGGACCTCGCAGATGC +
Preference number: 4 (lower is better)
Translates to: LESSSPLDGAGQALEGLKACPAW*SGPRRC
Trigger: GCATCTGCGAGGTCCGCTTCACCAGGCAGGACAAGC...CTTAAGTCCCTCTAAGGCCTGCCCTGCCCCATCCAGTGGGCTCGAACTTTCTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR TCA 90 bp CTAGAAAGTTCGAGCCCACTGGATGGGGCAGGGCAGGCCTTAGAGGGACTTAAGGGCAGCTCTGCCGTTTaGTGTGGCGGTGCAGGTGGT +
Preference number: 4 (lower is better)
Translates to: LESSSPLDGAGQALEGLKGSSAV*CGGAGG
Trigger: ACCACCTGCACCGCCACATCAAACGGCAGAGCTGCC...CTTAAGTCCCTCTAAGGCCTGCCCTGCCCCATCCAGTGGGCTCGAACTTTCTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR GCA 90 bp CGCACAGCTTGGGGCTCTGAGACTCCAGGCCCAGGCCTTGCAAGCAGGTGGATTACCATAGTCATTCTCTaGCTTGATGGGGCCCAGCGG +
Preference number: 4 (lower is better)
Translates to: RTAWGSETPGPGLASRWITIVIL*LDGAQR
Trigger: CCGCTGGGCCCCATCAAGGCAGAGAATGACTATGGT...AATCCACCTGCTTGCAAGGCCTGGGCCTGGAGTCTCAGAGCCCCAAGCTGTGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp CAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGGACCAGGGCCAGGTCTTGGAGGGGCTTTaGGGGCAGGTGATGTCCTGG +
Preference number: 4 (lower is better)
Translates to: QALEGLKTGFGSRVDQGQVLEGL*GQVMSW
Trigger: CCAGGACATCACCTGCCCCCAAAGCCCCTCCAAGAC...CTGGCCCTGGTCCACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp GATGGGGCAGGGCAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGCTCTGCCGTTTGATGTaGCGGTGCAGGTGGTCGGAG +
Preference number: 4 (lower is better)
Translates to: DGAGQALEGLKTGFGSRVLCRLM*RCRWSE
Trigger: CTCCGACCACCTGCACCGCCACATCAAACGGCAGAG...CACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTGCCCTGCCCCATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp GCAGGGCAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGGACCAGCTCTGCCGTTTGATGTaGCGGTGCAGGTGGTCGGAG +
Preference number: 4 (lower is better)
Translates to: AGQALEGLKTGFGSRVDQLCRLM*RCRWSE
Trigger: CTCCGACCACCTGCACCGCCACATCAAACGGCAGAG...CTGGTCCACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTGCCCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp GCTGATGTCCACATGGAGGCGATGAAACCCACTCCAGCAAGAGAGACAGTCTCCCCAGGGGTCGGGCAATaGGAAGTAGGGCCGAGTGGC +
Preference number: 4 (lower is better)
Translates to: ADVHMEAMKPTPARETVSPGVGQ*EVGPSG
Trigger: GCCACTCGGCCCTACTTCCCATTGCCCGACCCCTGG...GGAGACTGTCTCTCTTGCTGGAGTGGGTTTCATCGCCTCCATGTGGACATCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
CDS-3UTR CCA 90 bp AAGCGGTGTTGGGAGGGACTCCCCCATAGGGTCAAACGGCTCAACCAAGGTACCGACATGGAGGCCACGTaGTTGAGGCCGGTGAGACCA +
Preference number: 4 (lower is better)
Translates to: KRCWEGLPHRVKRLNQGTDMEAT*LRPVRP
Trigger: TGGTCTCACCGGCCTCAACCACGTGGCCTCCATGTC...GGTACCTTGGTTGAGCCGTTTGACCCTATGGGGGAGTCCCTCCCAACACCGCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
CDS-3UTR CCA 90 bp GATGGGGCAGGGCAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGGACATGGAGGCCACGTaGTTGAGGCCGGTGAGACCA +
Preference number: 4 (lower is better)
Translates to: DGAGQALEGLKTGFGSRVDMEAT*LRPVRP
Trigger: TGGTCTCACCGGCCTCAACCACGTGGCCTCCATGTC...CACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTGCCCTGCCCCATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR TCA 90 bp CAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGGACCAGGGCCAGTGCCTCCGGGCTCCATaGTCTCCAGGCACACATTCA +
Preference number: 4 (lower is better)
Translates to: QALEGLKTGFGSRVDQGQCLRAP*SPGTHS
Trigger: TGAATGTGTGCCTGGAGATCATGGAGCCCGGAGGCA...CTGGCCCTGGTCCACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR GCA 90 bp GATGGGGCAGGGCAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGGGACCTCGCAGATGCTaGACATGTACGGCTTCTCCC +
Preference number: 4 (lower is better)
Translates to: DGAGQALEGLKTGFGSRVGPRRC*TCTASP
Trigger: GGGAGAAGCCGTACATGTGCAGCATCTGCGAGGTCC...CACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTGCCCTGCCCCATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR GCA 90 bp GCAGGGCAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGGACCAGTGGCGTTGCAGTGAATaGACAAGTAGGGCCGCTCCC +
Preference number: 4 (lower is better)
Translates to: AGQALEGLKTGFGSRVDQWRCSE*TSRAAP
Trigger: GGGAGCGGCCCTACTTGTGCATTCACTGCAACGCCA...CTGGTCCACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTGCCCTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR GCA 90 bp TCAGGAGGGATAGCGTCTACTGTCTTCTCTGGCAGTTTTGCGTTTGCGTTTGCAGGAGGCACACGGCTGTaGCGCCCAGGTGGCCACCCA +
Preference number: 4 (lower is better)
Translates to: SGGIASTVFSGSFAFAFAGGTRL*RPGGHP
Trigger: TGGGTGGCCACCTGGGCGGCACAGCCGTGTGCCTCC...TGCAAACGCAAACGCAAAACTGCCAGAGAAGACAGTAGACGCTATCCCTCCTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp GCAGGGCAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGGACCAGCGGTACTCTTGCTCCTaGACCACCAGCAGCACGTCA +
Preference number: 4 (lower is better)
Translates to: AGQALEGLKTGFGSRVDQRYSCS*TTSSTS
Trigger: TGACGTGCTGCTGGTGGTCCAGGAGCAAGAGTACCG...CTGGTCCACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTGCCCTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp GCAGGGCAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGGACCAGAGGCAAACTCTAGGATaGCGGCCAGAGCTTCGGGCT +
Preference number: 4 (lower is better)
Translates to: AGQALEGLKTGFGSRVDQRQTLG*RPELRA
Trigger: AGCCCGAAGCTCTGGCCGCCATCCTAGAGTTTGCCT...CTGGTCCACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTGCCCTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp GCAGGGCAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGGACCAGGTCGGCAAAGTCCTCTaGGTCATCCTCCTCCTCCTC +
Preference number: 4 (lower is better)
Translates to: AGQALEGLKTGFGSRVDQVGKVL*VILLLL
Trigger: GAGGAGGAGGAGGATGACCCAGAGGACTTTGCCGAC...CTGGTCCACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTGCCCTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp TGGCCAGGACACAGTCCTCATGCTAGCTCCTCCCGGCCAGCTCGGCAGAATGCTTCAGGCAAGTTTTCCTaGTCGGCAAAGTCCTCTGGG +
Preference number: 4 (lower is better)
Translates to: WPGHSPHASSSRPARQNASGKFS*SAKSSG
Trigger: CCCAGAGGACTTTGCCGACCAGGAAAACTTGCCTGA...AGCATTCTGCCGAGCTGGCCGGGAGGAGCTAGCATGAGGACTGTGTCCTGGCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp GCAGGGCAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGGACCAGAAGAGGCTCCCCAGGTaGGTGGCACTCAGGAAGTTG +
Preference number: 4 (lower is better)
Translates to: AGQALEGLKTGFGSRVDQKRLPR*VALRKL
Trigger: CAACTTCCTGAGTGCCACCCACCTGGGGAGCCTCTT...CTGGTCCACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTGCCCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp GATGGGGCAGGGCAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGACTGCTGAGAGGCCTTaGGCTTCAGCTTGCGCTCCT +
Preference number: 4 (lower is better)
Translates to: DGAGQALEGLKTGFGSRVTAERP*ASACAP
Trigger: AGGAGCGCAAGCTGAAGCCCAAGGCCTCTCAGCAGT...CACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTGCCCTGCCCCATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp GCACATGAAGAAGCCAAGGCAGTTGATCTAGGAAGAGCTGAGTCTCGTGGACCCGTCGCCCAGCGCGGGTaGCATCACGAAGGCTGCCTT +
Preference number: 4 (lower is better)
Translates to: AHEEAKAVDLGRAESRGPVAQRG*HHEGCL
Trigger: AAGGCAGCCTTCGTGATGCCACCCGCGCTGGGCGAC...GGGTCCACGAGACTCAGCTCTTCCTAGATCAACTGCCTTGGCTTCTTCATGTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp GGGAGCTTCAGGAGGGATAGCGTCTACTGTCTTCTCTGGCAGTTTTGCGTTTGCGGAAGTAGGGCCGAGTaGCGGCCACGTTCTCGGCCA +
Preference number: 4 (lower is better)
Translates to: GSFRRDSVYCLLWQFCVCGSRAE*RPRSRP
Trigger: TGGCCGAGAACGTGGCCGCCACTCGGCCCTACTTCC...GCAAACGCAAAACTGCCAGAGAAGACAGTAGACGCTATCCCTCCTGAAGCTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR TCA 90 bp TGGGATTCCTGGAGCTACCTGTGGGGATTTGAAAGCCAGGAAGGCCTAGCCTATAGTCATTCTCTGCCTTaGTGGGGCCCAGCGGCCCAC +
Preference number: 4 (lower is better)
Translates to: WDSWSYLWGFESQEGLAYSHSLP*WGPAAH
Trigger: GTGGGCCGCTGGGCCCCATCAAGGCAGAGAATGACT...ATAGGCTAGGCCTTCCTGGCTTTCAAATCCCCACAGGTAGCTCCAGGAATCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
CDS-3UTR TCA 90 bp CTAGAAAGTTCGAGCCCACTGGATGGGGCAGGGCAGGCCTTAGAGGGACTTAAGGGTGGTCGGAGCGCGTaGAGCTCTTGTAGCAGAACT +
Preference number: 4 (lower is better)
Translates to: LESSSPLDGAGQALEGLKGGRSA*SSCSRT
Trigger: AGTTCTGCTACAAGAGCTTCACGCGCTCCGACCACC...CTTAAGTCCCTCTAAGGCCTGCCCTGCCCCATCCAGTGGGCTCGAACTTTCTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR GCA 90 bp GATGGGGCAGGGCAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGACCATAGTCATTCTCTaGCTTGATGGGGCCCAGCGG +
Preference number: 4 (lower is better)
Translates to: DGAGQALEGLKTGFGSRVTIVIL*LDGAQR
Trigger: CCGCTGGGCCCCATCAAGGCAGAGAATGACTATGGT...CACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTGCCCTGCCCCATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR GCA 90 bp GCAGGGCAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGGACCAGAGCGGACCTCGCAGATaGTGCACATGTACGGCTTCT +
Preference number: 4 (lower is better)
Translates to: AGQALEGLKTGFGSRVDQSGPRR*CTCTAS
Trigger: AGAAGCCGTACATGTGCAGCATCTGCGAGGTCCGCT...CTGGTCCACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTGCCCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR GCA 90 bp GATGGGGCAGGGCAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGAGCGGACCTCGCAGATaGTGCACATGTACGGCTTCT +
Preference number: 4 (lower is better)
Translates to: DGAGQALEGLKTGFGSRVSGPRR*CTCTAS
Trigger: AGAAGCCGTACATGTGCAGCATCTGCGAGGTCCGCT...CACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTGCCCTGCCCCATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR GCA 90 bp CAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGGACCAGGGCCAGAGCGGACCTCGCAGATaGTGCACATGTACGGCTTCT +
Preference number: 4 (lower is better)
Translates to: QALEGLKTGFGSRVDQGQSGPRR*CTCTAS
Trigger: AGAAGCCGTACATGTGCAGCATCTGCGAGGTCCGCT...CTGGCCCTGGTCCACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR GCA 90 bp CTTGGGAGCTTCAGGAGGGATAGCGTCTACTGTCTTCTCTGGCAGTTTTGCGTTTGGCATCACGAAGGCTaGCTTGTCGGCGGAGGGGCC +
Preference number: 4 (lower is better)
Translates to: LGSFRRDSVYCLLWQFCVWHHEG*LVGGGA
Trigger: GGCCCCTCCGCCGACAAGGCAGCCTTCGTGATGCCA...AACGCAAAACTGCCAGAGAAGACAGTAGACGCTATCCCTCCTGAAGCTCCCAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR GCA 90 bp CTAGAAAGTTCGAGCCCACTGGATGGGGCAGGGCAGGCCTTAGAGGGACTTAAGTGCGTCTCCTCGAACTaGCTTTCCAGCTCCTGCAGG +
Preference number: 4 (lower is better)
Translates to: LESSSPLDGAGQALEGLKCVSSN*LSSSCR
Trigger: CCTGCAGGAGCTGGAAAGGCAGTTCGAGGAGACGCA...CTTAAGTCCCTCTAAGGCCTGCCCTGCCCCATCCAGTGGGCTCGAACTTTCTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp GTAGAAGGGTGTCACCAGCAACGCCCAGGCCTGGAGAAACCTCAACTCAAGGAGGGGCAGGTGATGTCCTaGGGGTCAGGCAAGTTTTCC +
Preference number: 4 (lower is better)
Translates to: VEGCHQQRPGLEKPQLKEGQVMS*GSGKFS
Trigger: GGAAAACTTGCCTGACCCCCAGGACATCACCTGCCC...CTCCTTGAGTTGAGGTTTCTCCAGGCCTGGGCGTTGCTGGTGACACCCTTCTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
CDS-3UTR CCA 90 bp CTAGAAAGTTCGAGCCCACTGGATGGGGCAGGGCAGGCCTTAGAGGGACTTAAGGGGCAGGTGATGTCCTaGGGGTCAGGCAAGTTTTCC +
Preference number: 4 (lower is better)
Translates to: LESSSPLDGAGQALEGLKGQVMS*GSGKFS
Trigger: GGAAAACTTGCCTGACCCCCAGGACATCACCTGCCC...CTTAAGTCCCTCTAAGGCCTGCCCTGCCCCATCCAGTGGGCTCGAACTTTCTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp CAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGGACCAGGGCCAGAGTCGGGGAAGTCCCTaGGTGTGTCCGAATAGTCCT +
Preference number: 4 (lower is better)
Translates to: QALEGLKTGFGSRVDQGQSRGSP*VCPNSP
Trigger: AGGACTATTCGGACACACCCAGGGACTTCCCCGACT...CTGGCCCTGGTCCACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp GATGGGGCAGGGCAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGACCTGGCCAGAGGTGTaGGAAGAATTCCGGGGCAAA +
Preference number: 4 (lower is better)
Translates to: DGAGQALEGLKTGFGSRVTWPEV*EEFRGK
Trigger: TTTGCCCCGGAATTCTTCCCACACCTCTGGCCAGGT...CACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTGCCCTGCCCCATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR TCA 90 bp GGGCAGGATGCAGCGTGCGACCAAAGTTACGGAAGATTGTCCCTTGAATCACTAGGCAGCTCTGCCGTTTaGTGTGGCGGTGCAGGTGGT +
Preference number: 4 (lower is better)
Translates to: GQDAACDQSYGRLSLESLGSSAV*CGGAGG
Trigger: ACCACCTGCACCGCCACATCAAACGGCAGAGCTGCC...TAGTGATTCAAGGGACAATCTTCCGTAACTTTGGTCGCACGCTGCATCCTGCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR GCA 90 bp GATGGGGCAGGGCAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGGGCACACATTCACGATaGACTGGATCTCCAGCATCC +
Preference number: 4 (lower is better)
Translates to: DGAGQALEGLKTGFGSRVGTHSR*TGSPAS
Trigger: GGATGCTGGAGATCCAGTGCATCGTGAATGTGTGCC...CACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTGCCCTGCCCCATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp GCAGGGCAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGGACCAGGCCAGAGCTTCGGGCTaGACAAAGTCGATCTCATAC +
Preference number: 4 (lower is better)
Translates to: AGQALEGLKTGFGSRVDQARASG*TKSISY
Trigger: GTATGAGATCGACTTTGTCCAGCCCGAAGCTCTGGC...CTGGTCCACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTGCCCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp TGTAGAAGGGTGTCACCAGCAACGCCCAGGCCTGGAGAAACCTCAACTCAAGGAAGGCAAACTCTAGGATaGCGGCCAGAGCTTCGGGCT +
Preference number: 4 (lower is better)
Translates to: CRRVSPATPRPGETSTQGRQTLG*RPELRA
Trigger: AGCCCGAAGCTCTGGCCGCCATCCTAGAGTTTGCCT...TCCTTGAGTTGAGGTTTCTCCAGGCCTGGGCGTTGCTGGTGACACCCTTCTACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
CDS-3UTR CCA 90 bp GATGGGGCAGGGCAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGACATTCACGATGCACTaGATCTCCAGCATCCTGGCC +
Preference number: 4 (lower is better)
Translates to: DGAGQALEGLKTGFGSRVTFTMH*ISSILA
Trigger: GGCCAGGATGCTGGAGATCCAGTGCATCGTGAATGT...CACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTGCCCTGCCCCATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp GCAGGGCAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGGACCAGACATTCACGATGCACTaGATCTCCAGCATCCTGGCC +
Preference number: 4 (lower is better)
Translates to: AGQALEGLKTGFGSRVDQTFTMH*ISSILA
Trigger: GGCCAGGATGCTGGAGATCCAGTGCATCGTGAATGT...CTGGTCCACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTGCCCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp CAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGGACCAGGGCCAGTCAGGCAAGTTTTCCTaGTCGGCAAAGTCCTCTGGG +
Preference number: 4 (lower is better)
Translates to: QALEGLKTGFGSRVDQGQSGKFS*SAKSSG
Trigger: CCCAGAGGACTTTGCCGACCAGGAAAACTTGCCTGA...CTGGCCCTGGTCCACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp CTTGGGAGCTTCAGGAGGGATAGCGTCTACTGTCTTCTCTGGCAGTTTTGCGTTGTGGCCCACTGTCCATaGGCTGCTCAGGCAGCTGAG +
Preference number: 4 (lower is better)
Translates to: LGSFRRDSVYCLLWQFCVVAHCP*AAQAAE
Trigger: CTCAGCTGCCTGAGCAGCCCATGGACAGTGGGCCAC...AACGCAAAACTGCCAGAGAAGACAGTAGACGCTATCCCTCCTGAAGCTCCCAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp GCACATGAAGAAGCCAAGGCAGTTGATCTAGGAAGAGCTGAGTCTCGTGGACCCGACATGGAGGCCACGTaGTTGAGGCCGGTGAGACCA +
Preference number: 4 (lower is better)
Translates to: AHEEAKAVDLGRAESRGPDMEAT*LRPVRP
Trigger: TGGTCTCACCGGCCTCAACCACGTGGCCTCCATGTC...GGGTCCACGAGACTCAGCTCTTCCTAGATCAACTGCCTTGGCTTCTTCATGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR TCA 90 bp GCACATGAAGAAGCCAAGGCAGTTGATCTAGGAAGAGCTGAGTCTCGTGGACCCTGCCTCCGGGCTCCATaGTCTCCAGGCACACATTCA +
Preference number: 4 (lower is better)
Translates to: AHEEAKAVDLGRAESRGPCLRAP*SPGTHS
Trigger: TGAATGTGTGCCTGGAGATCATGGAGCCCGGAGGCA...GGGTCCACGAGACTCAGCTCTTCCTAGATCAACTGCCTTGGCTTCTTCATGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR TCA 90 bp CTGGGCAGGATGCAGCGTGCGACCAAAGTTACGGAAGATTGTCCCTTGAATCACTGCCTCCGGGCTCCATaGTCTCCAGGCACACATTCA +
Preference number: 4 (lower is better)
Translates to: LGRMQRATKVTEDCPLNHCLRAP*SPGTHS
Trigger: TGAATGTGTGCCTGGAGATCATGGAGCCCGGAGGCA...GTGATTCAAGGGACAATCTTCCGTAACTTTGGTCGCACGCTGCATCCTGCCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR TCA 90 bp ACCTACAAAAAGGAGATGCTGTCCCTCGAAGGCCAGGAGAATTGCATCTCAGCTGCTTGTCCTGCCTGGTaGAGCGGACCTCGCAGATGC +
Preference number: 4 (lower is better)
Translates to: TYKKEMLSLEGQENCISAACPAW*SGPRRC
Trigger: GCATCTGCGAGGTCCGCTTCACCAGGCAGGACAAGC...AGCTGAGATGCAATTCTCCTGGCCTTCGAGGGACAGCATCTCCTTTTTGTAGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR TCA 90 bp TCAGGAGGGATAGCGTCTACTGTCTTCTCTGGCAGTTTTGCGTTTGCGTTTGCAGCTTGTCCTGCCTGGTaGAGCGGACCTCGCAGATGC +
Preference number: 4 (lower is better)
Translates to: SGGIASTVFSGSFAFAFAACPAW*SGPRRC
Trigger: GCATCTGCGAGGTCCGCTTCACCAGGCAGGACAAGC...TGCAAACGCAAACGCAAAACTGCCAGAGAAGACAGTAGACGCTATCCCTCCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR TCA 90 bp GCACATGAAGAAGCCAAGGCAGTTGATCTAGGAAGAGCTGAGTCTCGTGGACCCGGTGGTCGGAGCGCGTaGAGCTCTTGTAGCAGAACT +
Preference number: 4 (lower is better)
Translates to: AHEEAKAVDLGRAESRGPGGRSA*SSCSRT
Trigger: AGTTCTGCTACAAGAGCTTCACGCGCTCCGACCACC...GGGTCCACGAGACTCAGCTCTTCCTAGATCAACTGCCTTGGCTTCTTCATGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR GCA 90 bp CTAGAAAGTTCGAGCCCACTGGATGGGGCAGGGCAGGCCTTAGAGGGACTTAAGGGCACACATTCACGATaGACTGGATCTCCAGCATCC +
Preference number: 4 (lower is better)
Translates to: LESSSPLDGAGQALEGLKGTHSR*TGSPAS
Trigger: GGATGCTGGAGATCCAGTGCATCGTGAATGTGTGCC...CTTAAGTCCCTCTAAGGCCTGCCCTGCCCCATCCAGTGGGCTCGAACTTTCTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR GCA 90 bp CTGGGCAGGATGCAGCGTGCGACCAAAGTTACGGAAGATTGTCCCTTGAATCACTGGCGTTGCAGTGAATaGACAAGTAGGGCCGCTCCC +
Preference number: 4 (lower is better)
Translates to: LGRMQRATKVTEDCPLNHWRCSE*TSRAAP
Trigger: GGGAGCGGCCCTACTTGTGCATTCACTGCAACGCCA...GTGATTCAAGGGACAATCTTCCGTAACTTTGGTCGCACGCTGCATCCTGCCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR GCA 90 bp GATGGGGCAGGGCAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGGCACGAACTTGGCGTTaGAGTGAATGCACAAGTAGG +
Preference number: 4 (lower is better)
Translates to: DGAGQALEGLKTGFGSRVARTWR*SECTSR
Trigger: CCTACTTGTGCATTCACTGCAACGCCAAGTTCGTGC...CACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTGCCCTGCCCCATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR GCA 90 bp AGGAGGGATAGCGTCTACTGTCTTCTCTGGCAGTTTTGCGTTTGCGTTTGCACACGTTTGATGTGGCGGTaGAGGTGGTCGGAGCGCGTG +
Preference number: 4 (lower is better)
Translates to: RRDSVYCLLWQFCVCVCTRLMWR*RWSERV
Trigger: CACGCGCTCCGACCACCTGCACCGCCACATCAAACG...TGTGCAAACGCAAACGCAAAACTGCCAGAGAAGACAGTAGACGCTATCCCTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR GCA 90 bp CTGGGCAGGATGCAGCGTGCGACCAAAGTTACGGAAGATTGTCCCTTGAATCACTGCGTCTCCTCGAACTaGCTTTCCAGCTCCTGCAGG +
Preference number: 4 (lower is better)
Translates to: LGRMQRATKVTEDCPLNHCVSSN*LSSSCR
Trigger: CCTGCAGGAGCTGGAAAGGCAGTTCGAGGAGACGCA...GTGATTCAAGGGACAATCTTCCGTAACTTTGGTCGCACGCTGCATCCTGCCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR GCA 90 bp GCAGGGCAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGGACCAGCCAAACAGCTTCATCTaGGTCTCCTCGAACTGCCTT +
Preference number: 4 (lower is better)
Translates to: AGQALEGLKTGFGSRVDQPNSFI*VSSNCL
Trigger: AAGGCAGTTCGAGGAGACGCAGATGAAGCTGTTTGG...CTGGTCCACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTGCCCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp CAGGCAGGGGCTCCCTTGGGAGCTTCAGGAGGGATAGCGTCTACTGTCTTCTCTCAGGGATGTTGGCTTTaGGGTACAAGTTCTCCCTCA +
Preference number: 4 (lower is better)
Translates to: QAGAPLGASGGIASTVFSQGCWL*GTSSPS
Trigger: TGAGGGAGAACTTGTACCCCAAAGCCAACATCCCTG...AGAGAAGACAGTAGACGCTATCCCTCCTGAAGCTCCCAAGGGAGCCCCTGCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp GATGGGGCAGGGCAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGCAGGGATGTTGGCTTTaGGGTACAAGTTCTCCCTCA +
Preference number: 4 (lower is better)
Translates to: DGAGQALEGLKTGFGSRVQGCWL*GTSSPS
Trigger: TGAGGGAGAACTTGTACCCCAAAGCCAACATCCCTG...CACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTGCCCTGCCCCATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp GCACATGAAGAAGCCAAGGCAGTTGATCTAGGAAGAGCTGAGTCTCGTGGACCCAAGAGGCTCCCCAGGTaGGTGGCACTCAGGAAGTTG +
Preference number: 4 (lower is better)
Translates to: AHEEAKAVDLGRAESRGPKRLPR*VALRKL
Trigger: CAACTTCCTGAGTGCCACCCACCTGGGGAGCCTCTT...GGGTCCACGAGACTCAGCTCTTCCTAGATCAACTGCCTTGGCTTCTTCATGTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp CGAGAAACCAAATACAAATTCAAGAAAGCGTGGGCCAGCAAAGTTCCCAACCCACACCAGCGGCCAGGGTaGGAAGAGGCTCCCCAGGTG +
Preference number: 4 (lower is better)
Translates to: RETKYKFKKAWASKVPNPHQRPG*EEAPQV
Trigger: CACCTGGGGAGCCTCTTCCCACCCTGGCCGCTGGTG...TGGGTTGGGAACTTTGCTGGCCCACGCTTTCTTGAATTTGTATTTGGTTTCTCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
CDS-3UTR CCA 90 bp CTGGGCAGGATGCAGCGTGCGACCAAAGTTACGGAAGATTGTCCCTTGAATCACACTGCTGAGAGGCCTTaGGCTTCAGCTTGCGCTCCT +
Preference number: 4 (lower is better)
Translates to: LGRMQRATKVTEDCPLNHTAERP*ASACAP
Trigger: AGGAGCGCAAGCTGAAGCCCAAGGCCTCTCAGCAGT...GTGATTCAAGGGACAATCTTCCGTAACTTTGGTCGCACGCTGCATCCTGCCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp ACTGTCTTCTCTGGCAGTTTTGCGTTTGCGTTTGCACATGAAGAAGCCAAGGCAGGAAGTAGGGCCGAGTaGCGGCCACGTTCTCGGCCA +
Preference number: 4 (lower is better)
Translates to: TVFSGSFAFAFAHEEAKAGSRAE*RPRSRP
Trigger: TGGCCGAGAACGTGGCCGCCACTCGGCCCTACTTCC...TGCCTTGGCTTCTTCATGTGCAAACGCAAACGCAAAACTGCCAGAGAAGACAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR TCA 90 bp CAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGGACCAGGGCCAGTGGCACTCAGGAAGTTaGGATAGGCACCATAGTCAT +
Preference number: 4 (lower is better)
Translates to: QALEGLKTGFGSRVDQGQWHSGS*DRHHSH
Trigger: ATGACTATGGTGCCTATCTCAACTTCCTGAGTGCCA...CTGGCCCTGGTCCACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR GCA 90 bp GAGCATTTCTGGGCAGGATGCAGCGTGCGACCAAAGTTACGGAAGATTGTCCCTACCATAGTCATTCTCTaGCTTGATGGGGCCCAGCGG +
Preference number: 4 (lower is better)
Translates to: EHFWAGCSVRPKLRKIVPTIVIL*LDGAQR
Trigger: CCGCTGGGCCCCATCAAGGCAGAGAATGACTATGGT...AGGGACAATCTTCCGTAACTTTGGTCGCACGCTGCATCCTGCCCAGAAATGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR GCA 90 bp CTAGCCTATCTTTCTCTGATCCTGTCCTTCCTGTTTAGTTCAGCCACATGTCTCTGGCATCACGAAGGCTaGCTTGTCGGCGGAGGGGCC +
Preference number: 4 (lower is better)
Translates to: LAYLSLILSFLFSSATCLWHHEG*LVGGGA
Trigger: GGCCCCTCCGCCGACAAGGCAGCCTTCGTGATGCCA...GAGACATGTGGCTGAACTAAACAGGAAGGACAGGATCAGAGAAAGATAGGCTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
CDS-3UTR CCA 90 bp CTTGGGAGCTTCAGGAGGGATAGCGTCTACTGTCTTCTCTGGCAGTTTTGCGTTGTCGGCAAAGTCCTCTaGGTCATCCTCCTCCTCCTC +
Preference number: 4 (lower is better)
Translates to: LGSFRRDSVYCLLWQFCVVGKVL*VILLLL
Trigger: GAGGAGGAGGAGGATGACCCAGAGGACTTTGCCGAC...AACGCAAAACTGCCAGAGAAGACAGTAGACGCTATCCCTCCTGAAGCTCCCAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp GCACATGAAGAAGCCAAGGCAGTTGATCTAGGAAGAGCTGAGTCTCGTGGACCCAGTCGGGGAAGTCCCTaGGTGTGTCCGAATAGTCCT +
Preference number: 4 (lower is better)
Translates to: AHEEAKAVDLGRAESRGPSRGSP*VCPNSP
Trigger: AGGACTATTCGGACACACCCAGGGACTTCCCCGACT...GGGTCCACGAGACTCAGCTCTTCCTAGATCAACTGCCTTGGCTTCTTCATGTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp GAGCATTTCTGGGCAGGATGCAGCGTGCGACCAAAGTTACGGAAGATTGTCCCTAGTCGGGGAAGTCCCTaGGTGTGTCCGAATAGTCCT +
Preference number: 4 (lower is better)
Translates to: EHFWAGCSVRPKLRKIVPSRGSP*VCPNSP
Trigger: AGGACTATTCGGACACACCCAGGGACTTCCCCGACT...AGGGACAATCTTCCGTAACTTTGGTCGCACGCTGCATCCTGCCCAGAAATGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp GATGGGGCAGGGCAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGTCAGCAGAGATTCAATaGAGAAGTCCCGGATCACTC +
Preference number: 4 (lower is better)
Translates to: DGAGQALEGLKTGFGSRVSAEIQ*RSPGSL
Trigger: GAGTGATCCGGGACTTCTCCATTGAATCTCTGCTGA...CACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTGCCCTGCCCCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp GATGGGGCAGGGCAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGAGTTGTGCACGAACTTaGCGTTGCAGTGAATGCACA +
Preference number: 4 (lower is better)
Translates to: DGAGQALEGLKTGFGSRVSCART*RCSECT
Trigger: TGTGCATTCACTGCAACGCCAAGTTCGTGCACAACT...CACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTGCCCTGCCCCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp AAGGAGATGCTGTCCCTCGAAGGCCAGGAGAATTGCATCTCAGCTAAAATGTATGTCGCCCAGCGCGGGTaGCATCACGAAGGCTGCCTT +
Preference number: 4 (lower is better)
Translates to: KEMLSLEGQENCISAKMYVAQRG*HHEGCL
Trigger: AAGGCAGCCTTCGTGATGCCACCCGCGCTGGGCGAC...ATACATTTTAGCTGAGATGCAATTCTCCTGGCCTTCGAGGGACAGCATCTCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp CTGGGCAGGATGCAGCGTGCGACCAAAGTTACGGAAGATTGTCCCTTGAATCACACATTCACGATGCACTaGATCTCCAGCATCCTGGCC +
Preference number: 4 (lower is better)
Translates to: LGRMQRATKVTEDCPLNHTFTMH*ISSILA
Trigger: GGCCAGGATGCTGGAGATCCAGTGCATCGTGAATGT...GTGATTCAAGGGACAATCTTCCGTAACTTTGGTCGCACGCTGCATCCTGCCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp AGGAGGGATAGCGTCTACTGTCTTCTCTGGCAGTTTTGCGTTTGCGTTTGCACAGTCGGCAAAGTCCTCTaGGTCATCCTCCTCCTCCTC +
Preference number: 4 (lower is better)
Translates to: RRDSVYCLLWQFCVCVCTVGKVL*VILLLL
Trigger: GAGGAGGAGGAGGATGACCCAGAGGACTTTGCCGAC...TGTGCAAACGCAAACGCAAAACTGCCAGAGAAGACAGTAGACGCTATCCCTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp GATGGGGCAGGGCAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGTTCTGTCAGGGATGTTaGCTTTGGGGTACAAGTTCT +
Preference number: 4 (lower is better)
Translates to: DGAGQALEGLKTGFGSRVFCQGC*LWGTSS
Trigger: AGAACTTGTACCCCAAAGCCAACATCCCTGACAGAA...CACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTGCCCTGCCCCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp CTTGGGAGCTTCAGGAGGGATAGCGTCTACTGTCTTCTCTGGCAGTTTTGCGTTACCTGGCCAGAGGTGTaGGAAGAATTCCGGGGCAAA +
Preference number: 4 (lower is better)
Translates to: LGSFRRDSVYCLLWQFCVTWPEV*EEFRGK
Trigger: TTTGCCCCGGAATTCTTCCCACACCTCTGGCCAGGT...AACGCAAAACTGCCAGAGAAGACAGTAGACGCTATCCCTCCTGAAGCTCCCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp AGGAGGGATAGCGTCTACTGTCTTCTCTGGCAGTTTTGCGTTTGCGTTTGCACAAAGAGGCTCCCCAGGTaGGTGGCACTCAGGAAGTTG +
Preference number: 4 (lower is better)
Translates to: RRDSVYCLLWQFCVCVCTKRLPR*VALRKL
Trigger: CAACTTCCTGAGTGCCACCCACCTGGGGAGCCTCTT...TGTGCAAACGCAAACGCAAAACTGCCAGAGAAGACAGTAGACGCTATCCCTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR TCA 90 bp ACTGTCTTCTCTGGCAGTTTTGCGTTTGCGTTTGCACATGAAGAAGCCAAGGCAGGTGGTCGGAGCGCGTaGAGCTCTTGTAGCAGAACT +
Preference number: 4 (lower is better)
Translates to: TVFSGSFAFAFAHEEAKAGGRSA*SSCSRT
Trigger: AGTTCTGCTACAAGAGCTTCACGCGCTCCGACCACC...TGCCTTGGCTTCTTCATGTGCAAACGCAAACGCAAAACTGCCAGAGAAGACAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR GCA 90 bp ACTGTCTTCTCTGGCAGTTTTGCGTTTGCGTTTGCACATGAAGAAGCCAAGGCAGGACCTCGCAGATGCTaGACATGTACGGCTTCTCCC +
Preference number: 4 (lower is better)
Translates to: TVFSGSFAFAFAHEEAKAGPRRC*TCTASP
Trigger: GGGAGAAGCCGTACATGTGCAGCATCTGCGAGGTCC...TGCCTTGGCTTCTTCATGTGCAAACGCAAACGCAAAACTGCCAGAGAAGACAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp TTTGCGTTTGCGTTTGCACATGAAGAAGCCAAGGCAGTTGATCTAGGAAGAGCTGTCTTGGAGGGGCTTTaGGGGCAGGTGATGTCCTGG +
Preference number: 4 (lower is better)
Translates to: FAFAFAHEEAKAVDLGRAVLEGL*GQVMSW
Trigger: CCAGGACATCACCTGCCCCCAAAGCCCCTCCAAGAC...AGCTCTTCCTAGATCAACTGCCTTGGCTTCTTCATGTGCAAACGCAAACGCAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp ACCTACAAAAAGGAGATGCTGTCCCTCGAAGGCCAGGAGAATTGCATCTCAGCTACCTGGCCAGAGGTGTaGGAAGAATTCCGGGGCAAA +
Preference number: 4 (lower is better)
Translates to: TYKKEMLSLEGQENCISATWPEV*EEFRGK
Trigger: TTTGCCCCGGAATTCTTCCCACACCTCTGGCCAGGT...AGCTGAGATGCAATTCTCCTGGCCTTCGAGGGACAGCATCTCCTTTTTGTAGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR TCA 90 bp GGGAGCTTCAGGAGGGATAGCGTCTACTGTCTTCTCTGGCAGTTTTGCGTTTGCTGGCACTCAGGAAGTTaGGATAGGCACCATAGTCAT +
Preference number: 4 (lower is better)
Translates to: GSFRRDSVYCLLWQFCVCWHSGS*DRHHSH
Trigger: ATGACTATGGTGCCTATCTCAACTTCCTGAGTGCCA...GCAAACGCAAAACTGCCAGAGAAGACAGTAGACGCTATCCCTCCTGAAGCTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR GCA 90 bp ATAAATAGGCCAGAAAATTATCTGAGCATTTCTGGGCAGGATGCAGCGTGCGACGGACCTCGCAGATGCTaGACATGTACGGCTTCTCCC +
Preference number: 4 (lower is better)
Translates to: INRPENYLSISGQDAACDGPRRC*TCTASP
Trigger: GGGAGAAGCCGTACATGTGCAGCATCTGCGAGGTCC...GTCGCACGCTGCATCCTGCCCAGAAATGCTCAGATAATTTTCTGGCCTATTTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR GCA 90 bp GGGCAGGATGCAGCGTGCGACCAAAGTTACGGAAGATTGTCCCTTGAATCACTAGCACGAACTTGGCGTTaGAGTGAATGCACAAGTAGG +
Preference number: 4 (lower is better)
Translates to: GQDAACDQSYGRLSLESLARTWR*SECTSR
Trigger: CCTACTTGTGCATTCACTGCAACGCCAAGTTCGTGC...TAGTGATTCAAGGGACAATCTTCCGTAACTTTGGTCGCACGCTGCATCCTGCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR GCA 90 bp CTTGGGAGCTTCAGGAGGGATAGCGTCTACTGTCTTCTCTGGCAGTTTTGCGTTCCAAACAGCTTCATCTaGGTCTCCTCGAACTGCCTT +
Preference number: 4 (lower is better)
Translates to: LGSFRRDSVYCLLWQFCVPNSFI*VSSNCL
Trigger: AAGGCAGTTCGAGGAGACGCAGATGAAGCTGTTTGG...AACGCAAAACTGCCAGAGAAGACAGTAGACGCTATCCCTCCTGAAGCTCCCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
3UTR CAA 72 bp GGAAGCATCACTCAATTGAATCTGGGACCTCTGAGCTaGAACCTGACTCCAAAAAGCGGTGTTGGGAGGGAC +
Preference number: 4 (lower is better)
Translates to: GSITQLNLGPLS*NLTPKSGVGRD
Trigger: GTCCCTCCCAACACCGCTTTTTGGAGTCAGGTTCAAGCTCAGAGGTCCCAGATTCAATTGAGTGATGCTTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
3UTR CAA 72 bp CTACAGCCGCTTGGCTGCTGGGGTAAAGTGTGCATATaGGCGACTGTCTGGACTGCAGACAGGAATTTAAGA +
Preference number: 4 (lower is better)
Translates to: LQPLGCWGKVCI*ATVWTADRNLR
Trigger: TCTTAAATTCCTGTCTGCAGTCCAGACAGTCGCCAATATGCACACTTTACCCCAGCAGCCAAGCGGCTGTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp GAAACCAAATACAAATTCAAGAAAGCGTGGGCCAGCAAAGTTCCCAACCCAGAACGGTACTCTTGCTCCTaGACCACCAGCAGCACGTCA +
Preference number: 4 (lower is better)
Translates to: ETKYKFKKAWASKVPNPERYSCS*TTSSTS
Trigger: TGACGTGCTGCTGGTGGTCCAGGAGCAAGAGTACCG...TTCTGGGTTGGGAACTTTGCTGGCCCACGCTTTCTTGAATTTGTATTTGGTTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
3UTR CAA 72 bp GGGCAGGATGCAGCGTGCGACCAAAGTTACGGAAGATaGTCCCTTGAATCACTAAGGCAAACCTCATTGTGT +
Preference number: 4 (lower is better)
Translates to: GQDAACDQSYGR*SLESLRQTSLC
Trigger: ACACAATGAGGTTTGCCTTAGTGATTCAAGGGACAATCTTCCGTAACTTTGGTCGCACGCTGCATCCTGCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp ACCTACAAAAAGGAGATGCTGTCCCTCGAAGGCCAGGAGAATTGCATCTCAGCTTCAGCAGAGATTCAATaGAGAAGTCCCGGATCACTC +
Preference number: 4 (lower is better)
Translates to: TYKKEMLSLEGQENCISASAEIQ*RSPGSL
Trigger: GAGTGATCCGGGACTTCTCCATTGAATCTCTGCTGA...AGCTGAGATGCAATTCTCCTGGCCTTCGAGGGACAGCATCTCCTTTTTGTAGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp TCAGGAGGGATAGCGTCTACTGTCTTCTCTGGCAGTTTTGCGTTTGCGTTTGCATCAGCAGAGATTCAATaGAGAAGTCCCGGATCACTC +
Preference number: 4 (lower is better)
Translates to: SGGIASTVFSGSFAFAFASAEIQ*RSPGSL
Trigger: GAGTGATCCGGGACTTCTCCATTGAATCTCTGCTGA...TGCAAACGCAAACGCAAAACTGCCAGAGAAGACAGTAGACGCTATCCCTCCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR GCA 90 bp CTAGCCTATCTTTCTCTGATCCTGTCCTTCCTGTTTAGTTCAGCCACATGTCTCCCAAACAGCTTCATCTaGGTCTCCTCGAACTGCCTT +
Preference number: 4 (lower is better)
Translates to: LAYLSLILSFLFSSATCLPNSFI*VSSNCL
Trigger: AAGGCAGTTCGAGGAGACGCAGATGAAGCTGTTTGG...GAGACATGTGGCTGAACTAAACAGGAAGGACAGGATCAGAGAAAGATAGGCTAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
CDS-3UTR CCA 90 bp GAAACCAAATACAAATTCAAGAAAGCGTGGGCCAGCAAAGTTCCCAACCCAGAAGCCAGAGCTTCGGGCTaGACAAAGTCGATCTCATAC +
Preference number: 4 (lower is better)
Translates to: ETKYKFKKAWASKVPNPEARASG*TKSISY
Trigger: GTATGAGATCGACTTTGTCCAGCCCGAAGCTCTGGC...TTCTGGGTTGGGAACTTTGCTGGCCCACGCTTTCTTGAATTTGTATTTGGTTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
CDS-3UTR CCA 90 bp AAGGAGATGCTGTCCCTCGAAGGCCAGGAGAATTGCATCTCAGCTAAAATGTATCAGGGATGTTGGCTTTaGGGTACAAGTTCTCCCTCA +
Preference number: 4 (lower is better)
Translates to: KEMLSLEGQENCISAKMYQGCWL*GTSSPS
Trigger: TGAGGGAGAACTTGTACCCCAAAGCCAACATCCCTG...ATACATTTTAGCTGAGATGCAATTCTCCTGGCCTTCGAGGGACAGCATCTCCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp TTTGCGTTTGCGTTTGCACATGAAGAAGCCAAGGCAGTTGATCTAGGAAGAGCTAGTTGTGCACGAACTTaGCGTTGCAGTGAATGCACA +
Preference number: 4 (lower is better)
Translates to: FAFAFAHEEAKAVDLGRASCART*RCSECT
Trigger: TGTGCATTCACTGCAACGCCAAGTTCGTGCACAACT...AGCTCTTCCTAGATCAACTGCCTTGGCTTCTTCATGTGCAAACGCAAACGCAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp ATAAATAGGCCAGAAAATTATCTGAGCATTTCTGGGCAGGATGCAGCGTGCGACAGTTGTGCACGAACTTaGCGTTGCAGTGAATGCACA +
Preference number: 4 (lower is better)
Translates to: INRPENYLSISGQDAACDSCART*RCSECT
Trigger: TGTGCATTCACTGCAACGCCAAGTTCGTGCACAACT...GTCGCACGCTGCATCCTGCCCAGAAATGCTCAGATAATTTTCTGGCCTATTTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp ATAAATAGGCCAGAAAATTATCTGAGCATTTCTGGGCAGGATGCAGCGTGCGACTTCTGTCAGGGATGTTaGCTTTGGGGTACAAGTTCT +
Preference number: 4 (lower is better)
Translates to: INRPENYLSISGQDAACDFCQGC*LWGTSS
Trigger: AGAACTTGTACCCCAAAGCCAACATCCCTGACAGAA...GTCGCACGCTGCATCCTGCCCAGAAATGCTCAGATAATTTTCTGGCCTATTTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CCA 90 bp GAAACCAAATACAAATTCAAGAAAGCGTGGGCCAGCAAAGTTCCCAACCCAGAATTCTGTCAGGGATGTTaGCTTTGGGGTACAAGTTCT +
Preference number: 4 (lower is better)
Translates to: ETKYKFKKAWASKVPNPEFCQGC*LWGTSS
Trigger: AGAACTTGTACCCCAAAGCCAACATCCCTGACAGAA...TTCTGGGTTGGGAACTTTGCTGGCCCACGCTTTCTTGAATTTGTATTTGGTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
CDS CCA 90 bp AGGCTGCCTTGTCGGCGGAGGGGCCACCGGGCCCGAAGAGCAGGCTaGCGGCCCTCCAGGCCGCGGGCTTGCGACCACGCCGGGGTCGTG +
Preference number: 5 (lower is better)
Translates to: RLPCRRRGHRARRAG*RPSRPRACDHAGVV
Trigger: CACGACCCCGGCGTGGTCGCAAGCCCGCGGCCTGGAGGGCCGCCAGCCTGCTCTTCGGGCCCGGTGGCCCCTCCGCCGACAAGGCAGCCT
78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS CCA 90 bp CACGGCTGTGCCGCCCAGGTGGCCACCCACGTCGCCCAGCGCGGGTaGCATCACGAAGGCTGCCTTGTCGGCGGAGGGGCCACCGGGCCC +
Preference number: 5 (lower is better)
Translates to: HGCAAQVATHVAQRG*HHEGCLVGGGATGP
Trigger: GGGCCCGGTGGCCCCTCCGCCGACAAGGCAGCCTTCGTGATGCCACCCGCGCTGGGCGACGTGGGTGGCCACCTGGGCGGCACAGCCGTG
77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS CCA 90 bp TTAGCGGGGCTGGGGCCCGGGAGGCACACGGCTGTGCCGCCCAGGTaGCCACCCACGTCGCCCAGCGCGGGTGGCATCACGAAGGCTGCC +
Preference number: 5 (lower is better)
Translates to: LAGLGPGRHTAVPPR*PPTSPSAGGITKAA
Trigger: GGCAGCCTTCGTGATGCCACCCGCGCTGGGCGACGTGGGTGGCCACCTGGGCGGCACAGCCGTGTGCCTCCCGGGCCCCAGCCCCGCTAA
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS GCA 90 bp CAGGTGGCCACCCACGTCGCCCAGCGCGGGTGGCATCACGAAGGCTaGCTTGTCGGCGGAGGGGCCACCGGGCCCGAAGAGCAGGCTGGC +
Preference number: 5 (lower is better)
Translates to: QVATHVAQRGWHHEG*LVGGGATGPEEQAG
Trigger: GCCAGCCTGCTCTTCGGGCCCGGTGGCCCCTCCGCCGACAAGGCAGCCTTCGTGATGCCACCCGCGCTGGGCGACGTGGGTGGCCACCTG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS CCA 90 bp CCAGACCTGCCGCCCAGGGGTCGGGCAATGGGAAGTAGGGCCGAGTaGCGGCCACGTTCTCGGCCAGCGCCAGGGCCAGGAGGCCACCCG +
Preference number: 5 (lower is better)
Translates to: PDLPPRGRAMGSRAE*RPRSRPAPGPGGHP
Trigger: CGGGTGGCCTCCTGGCCCTGGCGCTGGCCGAGAACGTGGCCGCCACTCGGCCCTACTTCCCATTGCCCGACCCCTGGGCGGCAGGTCTGG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS CCA 90 bp GAGACCAGGGAGGCCAGCCAGACCTGCCGCCCAGGGGTCGGGCAATaGGAAGTAGGGCCGAGTGGCGGCCACGTTCTCGGCCAGCGCCAG +
Preference number: 5 (lower is better)
Translates to: ETREASQTCRPGVGQ*EVGPSGGHVLGQRQ
Trigger: CTGGCGCTGGCCGAGAACGTGGCCGCCACTCGGCCCTACTTCCCATTGCCCGACCCCTGGGCGGCAGGTCTGGCTGGCCTCCCTGGTCTC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS CCA 90 bp CTGCAGGCCGCCAGCACTGAGCGGTGTGTTCGGTACTCTTGCTCCTaGACCACCAGCAGCACGTCACACAGCAGCCCCGCGTGCCGCTGC +
Preference number: 5 (lower is better)
Translates to: LQAASTERCVRYSCS*TTSSTSHSSPACRC
Trigger: GCAGCGGCACGCGGGGCTGCTGTGTGACGTGCTGCTGGTGGTCCAGGAGCAAGAGTACCGAACACACCGCTCAGTGCTGGCGGCCTGCAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS GCA 90 bp AGCGCCAGGGCCAGGAGGCCACCCGCATTCCTCTCGGCCTCGAGCTaGGCCCGTCCAAACAGCTTCATCTGCGTCTCCTCGAACTGCCTT +
Preference number: 5 (lower is better)
Translates to: SARARRPPAFLSASS*ARPNSFICVSSNCL
Trigger: AAGGCAGTTCGAGGAGACGCAGATGAAGCTGTTTGGACGGGCGCAGCTCGAGGCCGAGAGGAATGCGGGTGGCCTCCTGGCCCTGGCGCT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp GTCTCGTGGACCCGCACAGCTTGGGGCTCTGAGACTCCAGGCCCAGGCCTTGCATGTCTTGGAGGGGCTTaGGGGGCAGGTGATGTCCTG +
Preference number: 5 (lower is better)
Translates to: VSWTRTAWGSETPGPGLACLGGA*GAGDVL
Trigger: CAGGACATCACCTGCCCCCAAAGCCCCTCCAAGACA...TGCAAGGCCTGGGCCTGGAGTCTCAGAGCCCCAAGCTGTGCGGGTCCACGAGAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS GCA 90 bp TATTTGCTGCAGGCCGCCAGCACTGAGCGGTGTGTTCGGTACTCTTaGTCCTGGACCACCAGCAGCACGTCACACAGCAGCCCCGCGTGC +
Preference number: 5 (lower is better)
Translates to: YLLQAASTERCVRYS*SWTTSSTSHSSPAC
Trigger: GCACGCGGGGCTGCTGTGTGACGTGCTGCTGGTGGTCCAGGAGCAAGAGTACCGAACACACCGCTCAGTGCTGGCGGCCTGCAGCAAATA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS CCA 90 bp AGAGGCCTTGGGCTTCAGCTTGCGCTCCTCCACCAGCGGCCAGGGTaGGAAGAGGCTCCCCAGGTGGGTGGCACTCAGGAAGTTGAGATA +
Preference number: 5 (lower is better)
Translates to: RGLGLQLALLHQRPG*EEAPQVGGTQEVEI
Trigger: TATCTCAACTTCCTGAGTGCCACCCACCTGGGGAGCCTCTTCCCACCCTGGCCGCTGGTGGAGGAGCGCAAGCTGAAGCCCAAGGCCTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp GATGGGGCAGGGCAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGGCCTTGGGCTTCAGCTaGCGCTCCTCCACCAGCGGC +
Preference number: 5 (lower is better)
Translates to: DGAGQALEGLKTGFGSRVALGFS*RSSTSG
Trigger: GCCGCTGGTGGAGGAGCGCAAGCTGAAGCCCAAGGC...CACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTGCCCTGCCCCATC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp GATGGGGCAGGGCAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGATCACGAAGGCTGCCTaGTCGGCGGAGGGGCCACCG +
Preference number: 5 (lower is better)
Translates to: DGAGQALEGLKTGFGSRVITKAA*SAEGPP
Trigger: CGGTGGCCCCTCCGCCGACAAGGCAGCCTTCGTGAT...CACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTGCCCTGCCCCATC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp GCAGGGCAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGGACCAGCGGCAGCTCTGCCGTTaGATGTGGCGGTGCAGGTGG +
Preference number: 5 (lower is better)
Translates to: AGQALEGLKTGFGSRVDQRQLCR*MWRCRW
Trigger: CCACCTGCACCGCCACATCAAACGGCAGAGCTGCCG...CTGGTCCACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTGCCCTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp GCAGGGCAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGGACCAGAGGCTCAGGGTGCCCTaGGGGGAAGCCAGGAAGTGC +
Preference number: 5 (lower is better)
Translates to: AGQALEGLKTGFGSRVDQRLRVP*GEARKC
Trigger: GCACTTCCTGGCTTCCCCCAAGGGCACCCTGAGCCT...CTGGTCCACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTGCCCTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp CAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGGACCAGGGCCAGATGGAGGCCACGTGGTaGAGGCCGGTGAGACCAGGG +
Preference number: 5 (lower is better)
Translates to: QALEGLKTGFGSRVDQGQMEATW*RPVRPG
Trigger: CCCTGGTCTCACCGGCCTCAACCACGTGGCCTCCAT...CTGGCCCTGGTCCACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp GCCCTCCCCTGGGTCCCTCTGTTGGTTCTGAGTCTGGTGCAGCTACAGCCGCTTGTGTGTTCGGTACTCTaGCTCCTGGACCACCAGCAG +
Preference number: 5 (lower is better)
Translates to: ALPWVPLLVLSLVQLQPLVCSVL*LLDHQQ
Trigger: CTGCTGGTGGTCCAGGAGCAAGAGTACCGAACACAC...AAGCGGCTGTAGCTGCACCAGACTCAGAACCAACAGAGGGACCCAGGGGAGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS GCA 90 bp CCAAACAGCTTCATCTGCGTCTCCTCGAACTGCCTTTCCAGCTCCTaGAGGCTCAGGGTGCCCTTGGGGGAAGCCAGGAAGTGCTTAGCG +
Preference number: 5 (lower is better)
Translates to: PNSFICVSSNCLSSS*RLRVPLGEARKCLA
Trigger: CGCTAAGCACTTCCTGGCTTCCCCCAAGGGCACCCTGAGCCTGCAGGAGCTGGAAAGGCAGTTCGAGGAGACGCAGATGAAGCTGTTTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS CCA 90 bp TCCCTCAGCAGAGATTCAATGGAGAAGTCCCGGATCACTCCCAAATaGCCAGGGCTTCCGGGCTGGAAGGAGTCGGGGAAGTCCCTGGGT +
Preference number: 5 (lower is better)
Translates to: SLSRDSMEKSRITPK*PGLPGWKESGKSLG
Trigger: ACCCAGGGACTTCCCCGACTCCTTCCAGCCCGGAAGCCCTGGCCATTTGGGAGTGATCCGGGACTTCTCCATTGAATCTCTGCTGAGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp GCAGGGCAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGGACCAGTGTCTTGGAGGGGCTTaGGGGGCAGGTGATGTCCTG +
Preference number: 5 (lower is better)
Translates to: AGQALEGLKTGFGSRVDQCLGGA*GAGDVL
Trigger: CAGGACATCACCTGCCCCCAAAGCCCCTCCAAGACA...CTGGTCCACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTGCCCTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp CTAGAAAGTTCGAGCCCACTGGATGGGGCAGGGCAGGCCTTAGAGGGACTTAAGGTGAGGTGGTCTGTCTaGGAGGGGCTTTGGGGGCAG +
Preference number: 5 (lower is better)
Translates to: LESSSPLDGAGQALEGLKVRWSV*EGLWGQ
Trigger: CTGCCCCCAAAGCCCCTCCAAGACAGACCACCTCAC...CTTAAGTCCCTCTAAGGCCTGCCCTGCCCCATCCAGTGGGCTCGAACTTTCTAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp CGCACAGCTTGGGGCTCTGAGACTCCAGGCCCAGGCCTTGCAAGCAGGTGGATTGGGGCCAGCTCCTCTTaGTCCTCCTCCTTGATTTTG +
Preference number: 5 (lower is better)
Translates to: RTAWGSETPGPGLASRWIGASSS*SSSLIL
Trigger: CAAAATCAAGGAGGAGGACAAAGAGGAGCTGGCCCC...AATCCACCTGCTTGCAAGGCCTGGGCCTGGAGTCTCAGAGCCCCAAGCTGTGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp CTAGAAAGTTCGAGCCCACTGGATGGGGCAGGGCAGGCCTTAGAGGGACTTAAGGTAGCAGAACTCGCATaGGTAGGGCCGCACGCCGGT +
Preference number: 5 (lower is better)
Translates to: LESSSPLDGAGQALEGLKVAELA*VGPHAG
Trigger: ACCGGCGTGCGGCCCTACCAATGCGAGTTCTGCTAC...CTTAAGTCCCTCTAAGGCCTGCCCTGCCCCATCCAGTGGGCTCGAACTTTCTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp GCACATGAAGAAGCCAAGGCAGTTGATCTAGGAAGAGCTGAGTCTCGTGGACCCATCACGAAGGCTGCCTaGTCGGCGGAGGGGCCACCG +
Preference number: 5 (lower is better)
Translates to: AHEEAKAVDLGRAESRGPITKAA*SAEGPP
Trigger: CGGTGGCCCCTCCGCCGACAAGGCAGCCTTCGTGAT...GGGTCCACGAGACTCAGCTCTTCCTAGATCAACTGCCTTGGCTTCTTCATGTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS GCA 90 bp GTGGGTGGCACTCAGGAAGTTGAGATAGGCACCATAGTCATTCTCTaGCTTGATGGGGCCCAGCGGCCCACCGGGCAGGTCAGGAAACAT +
Preference number: 5 (lower is better)
Translates to: VGGTQEVEIGTIVIL*LDGAQRPTGQVRKH
Trigger: ATGTTTCCTGACCTGCCCGGTGGGCCGCTGGGCCCCATCAAGGCAGAGAATGACTATGGTGCCTATCTCAACTTCCTGAGTGCCACCCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp TGGCCAGGACACAGTCCTCATGCTAGCTCCTCCCGGCCAGCTCGGCAGAATGCTTCAGGGATGTTGGCTTaGGGGTACAAGTTCTCCCTC +
Preference number: 5 (lower is better)
Translates to: WPGHSPHASSSRPARQNASGMLA*GYKFSL
Trigger: GAGGGAGAACTTGTACCCCAAAGCCAACATCCCTGA...AGCATTCTGCCGAGCTGGCCGGGAGGAGCTAGCATGAGGACTGTGTCCTGGCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp GCACATGAAGAAGCCAAGGCAGTTGATCTAGGAAGAGCTGAGTCTCGTGGACCCCGGCAGCTCTGCCGTTaGATGTGGCGGTGCAGGTGG +
Preference number: 5 (lower is better)
Translates to: AHEEAKAVDLGRAESRGPRQLCR*MWRCRW
Trigger: CCACCTGCACCGCCACATCAAACGGCAGAGCTGCCG...GGGTCCACGAGACTCAGCTCTTCCTAGATCAACTGCCTTGGCTTCTTCATGTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp GAGCATTTCTGGGCAGGATGCAGCGTGCGACCAAAGTTACGGAAGATTGTCCCTAGGCTCAGGGTGCCCTaGGGGGAAGCCAGGAAGTGC +
Preference number: 5 (lower is better)
Translates to: EHFWAGCSVRPKLRKIVPRLRVP*GEARKC
Trigger: GCACTTCCTGGCTTCCCCCAAGGGCACCCTGAGCCT...AGGGACAATCTTCCGTAACTTTGGTCGCACGCTGCATCCTGCCCAGAAATGCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp GCACATGAAGAAGCCAAGGCAGTTGATCTAGGAAGAGCTGAGTCTCGTGGACCCAGGCTCAGGGTGCCCTaGGGGGAAGCCAGGAAGTGC +
Preference number: 5 (lower is better)
Translates to: AHEEAKAVDLGRAESRGPRLRVP*GEARKC
Trigger: GCACTTCCTGGCTTCCCCCAAGGGCACCCTGAGCCT...GGGTCCACGAGACTCAGCTCTTCCTAGATCAACTGCCTTGGCTTCTTCATGTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS CCA 90 bp CTGCCTCCGGGCTCCATGATCTCCAGGCACACATTCACGATGCACTaGATCTCCAGCATCCTGGCCGCATTGAGGATGTGCTTGACGTTG +
Preference number: 5 (lower is better)
Translates to: LPPGSMISRHTFTMH*ISSILAALRMCLTL
Trigger: CAACGTCAAGCACATCCTCAATGCGGCCAGGATGCTGGAGATCCAGTGCATCGTGAATGTGTGCCTGGAGATCATGGAGCCCGGAGGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp CTAGAAAGTTCGAGCCCACTGGATGGGGCAGGGCAGGCCTTAGAGGGACTTAAGGTGTGTTCGGTACTCTaGCTCCTGGACCACCAGCAG +
Preference number: 5 (lower is better)
Translates to: LESSSPLDGAGQALEGLKVCSVL*LLDHQQ
Trigger: CTGCTGGTGGTCCAGGAGCAAGAGTACCGAACACAC...CTTAAGTCCCTCTAAGGCCTGCCCTGCCCCATCCAGTGGGCTCGAACTTTCTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp CTAGAAAGTTCGAGCCCACTGGATGGGGCAGGGCAGGCCTTAGAGGGACTTAAGAGGATGTGCTTGACGTaGGAGGCGGTGATGGTGAGC +
Preference number: 5 (lower is better)
Translates to: LESSSPLDGAGQALEGLKRMCLT*EAVMVS
Trigger: GCTCACCATCACCGCCTCCAACGTCAAGCACATCCT...CTTAAGTCCCTCTAAGGCCTGCCCTGCCCCATCCAGTGGGCTCGAACTTTCTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp CAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGGACCAGGGCCAGAGCATCCTGGCCGCATaGAGGATGTGCTTGACGTTG +
Preference number: 5 (lower is better)
Translates to: QALEGLKTGFGSRVDQGQSILAA*RMCLTL
Trigger: CAACGTCAAGCACATCCTCAATGCGGCCAGGATGCT...CTGGCCCTGGTCCACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp CAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGGACCAGGGCCAGGGGGCCAGCTCCTCTTaGTCCTCCTCCTTGATTTTG +
Preference number: 5 (lower is better)
Translates to: QALEGLKTGFGSRVDQGQGASSS*SSSLIL
Trigger: CAAAATCAAGGAGGAGGACAAAGAGGAGCTGGCCCC...CTGGCCCTGGTCCACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp TCAGGAGGGATAGCGTCTACTGTCTTCTCTGGCAGTTTTGCGTTTGCGTTTGCAGCCTTGGGCTTCAGCTaGCGCTCCTCCACCAGCGGC +
Preference number: 5 (lower is better)
Translates to: SGGIASTVFSGSFAFAFAALGFS*RSSTSG
Trigger: GCCGCTGGTGGAGGAGCGCAAGCTGAAGCCCAAGGC...TGCAAACGCAAACGCAAAACTGCCAGAGAAGACAGTAGACGCTATCCCTCCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp TGGGATTCCTGGAGCTACCTGTGGGGATTTGAAAGCCAGGAAGGCCTAGCCTATGTAGCAGAACTCGCATaGGTAGGGCCGCACGCCGGT +
Preference number: 5 (lower is better)
Translates to: WDSWSYLWGFESQEGLAYVAELA*VGPHAG
Trigger: ACCGGCGTGCGGCCCTACCAATGCGAGTTCTGCTAC...ATAGGCTAGGCCTTCCTGGCTTTCAAATCCCCACAGGTAGCTCCAGGAATCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
CDS-3UTR CAA 90 bp GGGCAGGATGCAGCGTGCGACCAAAGTTACGGAAGATTGTCCCTTGAATCACTACGGCAGCTCTGCCGTTaGATGTGGCGGTGCAGGTGG +
Preference number: 5 (lower is better)
Translates to: GQDAACDQSYGRLSLESLRQLCR*MWRCRW
Trigger: CCACCTGCACCGCCACATCAAACGGCAGAGCTGCCG...TAGTGATTCAAGGGACAATCTTCCGTAACTTTGGTCGCACGCTGCATCCTGCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp GGGCAGGATGCAGCGTGCGACCAAAGTTACGGAAGATTGTCCCTTGAATCACTAATGGAGGCCACGTGGTaGAGGCCGGTGAGACCAGGG +
Preference number: 5 (lower is better)
Translates to: GQDAACDQSYGRLSLESLMEATW*RPVRPG
Trigger: CCCTGGTCTCACCGGCCTCAACCACGTGGCCTCCAT...TAGTGATTCAAGGGACAATCTTCCGTAACTTTGGTCGCACGCTGCATCCTGCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS CCA 90 bp GATGTCCTGGGGGTCAGGCAAGTTTTCCTGGTCGGCAAAGTCCTCTaGGTCATCCTCCTCCTCCTCTTCTTCCTCTTCCTCCTCCTCTTC +
Preference number: 5 (lower is better)
Translates to: DVLGVRQVFLVGKVL*VILLLLFFLFLLLF
Trigger: GAAGAGGAGGAGGAAGAGGAAGAAGAGGAGGAGGAGGATGACCCAGAGGACTTTGCCGACCAGGAAAACTTGCCTGACCCCCAGGACATC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp CTAGAAAGTTCGAGCCCACTGGATGGGGCAGGGCAGGCCTTAGAGGGACTTAAGGCATTGAGGATGTGCTaGACGTTGGAGGCGGTGATG +
Preference number: 5 (lower is better)
Translates to: LESSSPLDGAGQALEGLKALRMC*TLEAVM
Trigger: CATCACCGCCTCCAACGTCAAGCACATCCTCAATGC...CTTAAGTCCCTCTAAGGCCTGCCCTGCCCCATCCAGTGGGCTCGAACTTTCTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp GCACATGAAGAAGCCAAGGCAGTTGATCTAGGAAGAGCTGAGTCTCGTGGACCCTGTCTTGGAGGGGCTTaGGGGGCAGGTGATGTCCTG +
Preference number: 5 (lower is better)
Translates to: AHEEAKAVDLGRAESRGPCLGGA*GAGDVL
Trigger: CAGGACATCACCTGCCCCCAAAGCCCCTCCAAGACA...GGGTCCACGAGACTCAGCTCTTCCTAGATCAACTGCCTTGGCTTCTTCATGTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp AAGCGGTGTTGGGAGGGACTCCCCCATAGGGTCAAACGGCTCAACCAAGGTACCTCAGGGATGTTGGCTTaGGGGTACAAGTTCTCCCTC +
Preference number: 5 (lower is better)
Translates to: KRCWEGLPHRVKRLNQGTSGMLA*GYKFSL
Trigger: GAGGGAGAACTTGTACCCCAAAGCCAACATCCCTGA...GGTACCTTGGTTGAGCCGTTTGACCCTATGGGGGAGTCCCTCCCAACACCGCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
CDS-3UTR CAA 90 bp GCAGGGCAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGGACCAGTCAGGGATGTTGGCTTaGGGGTACAAGTTCTCCCTC +
Preference number: 5 (lower is better)
Translates to: AGQALEGLKTGFGSRVDQSGMLA*GYKFSL
Trigger: GAGGGAGAACTTGTACCCCAAAGCCAACATCCCTGA...CTGGTCCACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTGCCCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp CTAGAAAGTTCGAGCCCACTGGATGGGGCAGGGCAGGCCTTAGAGGGACTTAAGATGTGGATCTTCAGCTaGTCCTGCCTGGTGAAGCGG +
Preference number: 5 (lower is better)
Translates to: LESSSPLDGAGQALEGLKMWIFS*SCLVKR
Trigger: CCGCTTCACCAGGCAGGACAAGCTGAAGATCCACAT...CTTAAGTCCCTCTAAGGCCTGCCCTGCCCCATCCAGTGGGCTCGAACTTTCTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS CCA 90 bp GGATGTTGGCTTTGGGGTACAAGTTCTCCCTCAGCAGAGATTCAATaGAGAAGTCCCGGATCACTCCCAAATGGCCAGGGCTTCCGGGCT +
Preference number: 5 (lower is better)
Translates to: GCWLWGTSSPSAEIQ*RSPGSLPNGQGFRA
Trigger: AGCCCGGAAGCCCTGGCCATTTGGGAGTGATCCGGGACTTCTCCATTGAATCTCTGCTGAGGGAGAACTTGTACCCCAAAGCCAACATCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp CAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGGACCAGGGCCAGGCTGTGAAGAGCTTCTaGAAGTATTTGCTGCAGGCC +
Preference number: 5 (lower is better)
Translates to: QALEGLKTGFGSRVDQGQAVKSF*KYLLQA
Trigger: GGCCTGCAGCAAATACTTCAAGAAGCTCTTCACAGC...CTGGCCCTGGTCCACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp TGTAGAAGGGTGTCACCAGCAACGCCCAGGCCTGGAGAAACCTCAACTCAAGGAGCATTGAGGATGTGCTaGACGTTGGAGGCGGTGATG +
Preference number: 5 (lower is better)
Translates to: CRRVSPATPRPGETSTQGALRMC*TLEAVM
Trigger: CATCACCGCCTCCAACGTCAAGCACATCCTCAATGC...TCCTTGAGTTGAGGTTTCTCCAGGCCTGGGCGTTGCTGGTGACACCCTTCTACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
CDS-3UTR CAA 90 bp ATAAATAGGCCAGAAAATTATCTGAGCATTTCTGGGCAGGATGCAGCGTGCGACGCCTTGGGCTTCAGCTaGCGCTCCTCCACCAGCGGC +
Preference number: 5 (lower is better)
Translates to: INRPENYLSISGQDAACDALGFS*RSSTSG
Trigger: GCCGCTGGTGGAGGAGCGCAAGCTGAAGCCCAAGGC...GTCGCACGCTGCATCCTGCCCAGAAATGCTCAGATAATTTTCTGGCCTATTTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp TTTGCGTTTGCGTTTGCACATGAAGAAGCCAAGGCAGTTGATCTAGGAAGAGCTATCACGAAGGCTGCCTaGTCGGCGGAGGGGCCACCG +
Preference number: 5 (lower is better)
Translates to: FAFAFAHEEAKAVDLGRAITKAA*SAEGPP
Trigger: CGGTGGCCCCTCCGCCGACAAGGCAGCCTTCGTGAT...AGCTCTTCCTAGATCAACTGCCTTGGCTTCTTCATGTGCAAACGCAAACGCAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp GCACATGAAGAAGCCAAGGCAGTTGATCTAGGAAGAGCTGAGTCTCGTGGACCCGCATTGAGGATGTGCTaGACGTTGGAGGCGGTGATG +
Preference number: 5 (lower is better)
Translates to: AHEEAKAVDLGRAESRGPALRMC*TLEAVM
Trigger: CATCACCGCCTCCAACGTCAAGCACATCCTCAATGC...GGGTCCACGAGACTCAGCTCTTCCTAGATCAACTGCCTTGGCTTCTTCATGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp GGGAGCTTCAGGAGGGATAGCGTCTACTGTCTTCTCTGGCAGTTTTGCGTTTGCAGCATCCTGGCCGCATaGAGGATGTGCTTGACGTTG +
Preference number: 5 (lower is better)
Translates to: GSFRRDSVYCLLWQFCVCSILAA*RMCLTL
Trigger: CAACGTCAAGCACATCCTCAATGCGGCCAGGATGCT...GCAAACGCAAAACTGCCAGAGAAGACAGTAGACGCTATCCCTCCTGAAGCTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp CTGGGCAGGATGCAGCGTGCGACCAAAGTTACGGAAGATTGTCCCTTGAATCACATGTGGATCTTCAGCTaGTCCTGCCTGGTGAAGCGG +
Preference number: 5 (lower is better)
Translates to: LGRMQRATKVTEDCPLNHMWIFS*SCLVKR
Trigger: CCGCTTCACCAGGCAGGACAAGCTGAAGATCCACAT...GTGATTCAAGGGACAATCTTCCGTAACTTTGGTCGCACGCTGCATCCTGCCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp ATAAATAGGCCAGAAAATTATCTGAGCATTTCTGGGCAGGATGCAGCGTGCGACATGGAGGCCACGTGGTaGAGGCCGGTGAGACCAGGG +
Preference number: 5 (lower is better)
Translates to: INRPENYLSISGQDAACDMEATW*RPVRPG
Trigger: CCCTGGTCTCACCGGCCTCAACCACGTGGCCTCCAT...GTCGCACGCTGCATCCTGCCCAGAAATGCTCAGATAATTTTCTGGCCTATTTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp AAGGAGATGCTGTCCCTCGAAGGCCAGGAGAATTGCATCTCAGCTAAAATGTATGTGAGGTGGTCTGTCTaGGAGGGGCTTTGGGGGCAG +
Preference number: 5 (lower is better)
Translates to: KEMLSLEGQENCISAKMYVRWSV*EGLWGQ
Trigger: CTGCCCCCAAAGCCCCTCCAAGACAGACCACCTCAC...ATACATTTTAGCTGAGATGCAATTCTCCTGGCCTTCGAGGGACAGCATCTCCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp GATGGGGCAGGGCAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGTCTTTGTCCTCCTCCTaGATTTTGCGGTTCTTGATG +
Preference number: 5 (lower is better)
Translates to: DGAGQALEGLKTGFGSRVSLSSS*ILRFLM
Trigger: CATCAAGAACCGCAAAATCAAGGAGGAGGACAAAGA...CACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTGCCCTGCCCCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp GCAGGGCAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGGACCAGTCTTTGTCCTCCTCCTaGATTTTGCGGTTCTTGATG +
Preference number: 5 (lower is better)
Translates to: AGQALEGLKTGFGSRVDQSLSSS*ILRFLM
Trigger: CATCAAGAACCGCAAAATCAAGGAGGAGGACAAAGA...CTGGTCCACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTGCCCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp GATGGGGCAGGGCAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGTCAGGAAACATGTCCTaGAAGAAGTCGCTAGAGAAG +
Preference number: 5 (lower is better)
Translates to: DGAGQALEGLKTGFGSRVSGNMS*KKSLEK
Trigger: CTTCTCTAGCGACTTCTTCAAGGACATGTTTCCTGA...CACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTGCCCTGCCCCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp ATAAATAGGCCAGAAAATTATCTGAGCATTTCTGGGCAGGATGCAGCGTGCGACGTAGCAGAACTCGCATaGGTAGGGCCGCACGCCGGT +
Preference number: 5 (lower is better)
Translates to: INRPENYLSISGQDAACDVAELA*VGPHAG
Trigger: ACCGGCGTGCGGCCCTACCAATGCGAGTTCTGCTAC...GTCGCACGCTGCATCCTGCCCAGAAATGCTCAGATAATTTTCTGGCCTATTTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp AGGAGGGATAGCGTCTACTGTCTTCTCTGGCAGTTTTGCGTTTGCGTTTGCACAAGCATCCTGGCCGCATaGAGGATGTGCTTGACGTTG +
Preference number: 5 (lower is better)
Translates to: RRDSVYCLLWQFCVCVCTSILAA*RMCLTL
Trigger: CAACGTCAAGCACATCCTCAATGCGGCCAGGATGCT...TGTGCAAACGCAAACGCAAAACTGCCAGAGAAGACAGTAGACGCTATCCCTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp CAGGCCTTAGAGGGACTTAAGACAGGGTTTGGGTCTAGGGTGGACCAGGGCCAGTCCTCCTCCTTGATTTaGCGGTTCTTGATGACTAAA +
Preference number: 5 (lower is better)
Translates to: QALEGLKTGFGSRVDQGQSSSLI*RFLMTK
Trigger: TTTAGTCATCAAGAACCGCAAAATCAAGGAGGAGGA...CTGGCCCTGGTCCACCCTAGACCCAAACCCTGTCTTAAGTCCCTCTAAGGCCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp ACCTACAAAAAGGAGATGCTGTCCCTCGAAGGCCAGGAGAATTGCATCTCAGCTGGGGCCAGCTCCTCTTaGTCCTCCTCCTTGATTTTG +
Preference number: 5 (lower is better)
Translates to: TYKKEMLSLEGQENCISAGASSS*SSSLIL
Trigger: CAAAATCAAGGAGGAGGACAAAGAGGAGCTGGCCCC...AGCTGAGATGCAATTCTCCTGGCCTTCGAGGGACAGCATCTCCTTTTTGTAGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS CCA 90 bp ATTCCGGGGCAAACGGAGATAAGGAGGGTCTTCTGTCAGGGATGTTaGCTTTGGGGTACAAGTTCTCCCTCAGCAGAGATTCAATGGAGA +
Preference number: 5 (lower is better)
Translates to: IPGQTEIRRVFCQGC*LWGTSSPSAEIQWR
Trigger: TCTCCATTGAATCTCTGCTGAGGGAGAACTTGTACCCCAAAGCCAACATCCCTGACAGAAGACCCTCCTTATCTCCGTTTGCCCCGGAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp TTTGCGTTTGCGTTTGCACATGAAGAAGCCAAGGCAGTTGATCTAGGAAGAGCTGTGTGTTCGGTACTCTaGCTCCTGGACCACCAGCAG +
Preference number: 5 (lower is better)
Translates to: FAFAFAHEEAKAVDLGRAVCSVL*LLDHQQ
Trigger: CTGCTGGTGGTCCAGGAGCAAGAGTACCGAACACAC...AGCTCTTCCTAGATCAACTGCCTTGGCTTCTTCATGTGCAAACGCAAACGCAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp AAGGAGATGCTGTCCCTCGAAGGCCAGGAGAATTGCATCTCAGCTAAAATGTATAGGATGTGCTTGACGTaGGAGGCGGTGATGGTGAGC +
Preference number: 5 (lower is better)
Translates to: KEMLSLEGQENCISAKMYRMCLT*EAVMVS
Trigger: GCTCACCATCACCGCCTCCAACGTCAAGCACATCCT...ATACATTTTAGCTGAGATGCAATTCTCCTGGCCTTCGAGGGACAGCATCTCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp TGTAGAAGGGTGTCACCAGCAACGCCCAGGCCTGGAGAAACCTCAACTCAAGGATCTTTGTCCTCCTCCTaGATTTTGCGGTTCTTGATG +
Preference number: 5 (lower is better)
Translates to: CRRVSPATPRPGETSTQGSLSSS*ILRFLM
Trigger: CATCAAGAACCGCAAAATCAAGGAGGAGGACAAAGA...TCCTTGAGTTGAGGTTTCTCCAGGCCTGGGCGTTGCTGGTGACACCCTTCTACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
CDS-3UTR CAA 90 bp TGTAGAAGGGTGTCACCAGCAACGCCCAGGCCTGGAGAAACCTCAACTCAAGGATCAGGAAACATGTCCTaGAAGAAGTCGCTAGAGAAG +
Preference number: 5 (lower is better)
Translates to: CRRVSPATPRPGETSTQGSGNMS*KKSLEK
Trigger: CTTCTCTAGCGACTTCTTCAAGGACATGTTTCCTGA...TCCTTGAGTTGAGGTTTCTCCAGGCCTGGGCGTTGCTGGTGACACCCTTCTACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
CDS-3UTR CAA 90 bp GAAACCAAATACAAATTCAAGAAAGCGTGGGCCAGCAAAGTTCCCAACCCAGAAAGGATGTGCTTGACGTaGGAGGCGGTGATGGTGAGC +
Preference number: 5 (lower is better)
Translates to: ETKYKFKKAWASKVPNPERMCLT*EAVMVS
Trigger: GCTCACCATCACCGCCTCCAACGTCAAGCACATCCT...TTCTGGGTTGGGAACTTTGCTGGCCCACGCTTTCTTGAATTTGTATTTGGTTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
CDS-3UTR CAA 90 bp ACCTCTGAGCTTGAACCTGACTCCAAAAAGCGGTGTTGGGAGGGACTCCCCCATTCCTCCTCCTTGATTTaGCGGTTCTTGATGACTAAA +
Preference number: 5 (lower is better)
Translates to: TSELEPDSKKRCWEGLPHSSSLI*RFLMTK
Trigger: TTTAGTCATCAAGAACCGCAAAATCAAGGAGGAGGA...ATGGGGGAGTCCCTCCCAACACCGCTTTTTGGAGTCAGGTTCAAGCTCAGAGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
CDS-3UTR CAA 90 bp GCACATGAAGAAGCCAAGGCAGTTGATCTAGGAAGAGCTGAGTCTCGTGGACCCTCAGGAAACATGTCCTaGAAGAAGTCGCTAGAGAAG +
Preference number: 5 (lower is better)
Translates to: AHEEAKAVDLGRAESRGPSGNMS*KKSLEK
Trigger: CTTCTCTAGCGACTTCTTCAAGGACATGTTTCCTGA...GGGTCCACGAGACTCAGCTCTTCCTAGATCAACTGCCTTGGCTTCTTCATGTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp TTTGCGTTTGCGTTTGCACATGAAGAAGCCAAGGCAGTTGATCTAGGAAGAGCTATGTGGATCTTCAGCTaGTCCTGCCTGGTGAAGCGG +
Preference number: 5 (lower is better)
Translates to: FAFAFAHEEAKAVDLGRAMWIFS*SCLVKR
Trigger: CCGCTTCACCAGGCAGGACAAGCTGAAGATCCACAT...AGCTCTTCCTAGATCAACTGCCTTGGCTTCTTCATGTGCAAACGCAAACGCAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp CTGGGCAGGATGCAGCGTGCGACCAAAGTTACGGAAGATTGTCCCTTGAATCACTCCTCCTCCTTGATTTaGCGGTTCTTGATGACTAAA +
Preference number: 5 (lower is better)
Translates to: LGRMQRATKVTEDCPLNHSSSLI*RFLMTK
Trigger: TTTAGTCATCAAGAACCGCAAAATCAAGGAGGAGGA...GTGATTCAAGGGACAATCTTCCGTAACTTTGGTCGCACGCTGCATCCTGCCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058997.15
ENSMUST00000236462.2
CDS-3UTR CAA 90 bp CGAGAAACCAAATACAAATTCAAGAAAGCGTGGGCCAGCAAAGTTCCCAACCCAGCTGTGAAGAGCTTCTaGAAGTATTTGCTGCAGGCC +
Preference number: 5 (lower is better)
Translates to: RETKYKFKKAWASKVPNPAVKSF*KYLLQA
Trigger: GGCCTGCAGCAAATACTTCAAGAAGCTCTTCACAGC...TGGGTTGGGAACTTTGCTGGCCCACGCTTTCTTGAATTTGTATTTGGTTTCTCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058997.15
CDS CAA 90 bp CCACCGGGCCCGAAGAGCAGGCTGGCGGCCCTCCAGGCCGCGGGCTaGCGACCACGCCGGGGTCGTGCCATGCGGCAGCTCTGCCGTTTG +
Preference number: 6 (lower is better)
Translates to: PPGPKSRLAALQAAG*RPRRGRAMRQLCRL
Trigger: CAAACGGCAGAGCTGCCGCATGGCACGACCCCGGCGTGGTCGCAAGCCCGCGGCCTGGAGGGCCGCCAGCCTGCTCTTCGGGCCCGGTGG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS CAA 90 bp TGGCCACCCACGTCGCCCAGCGCGGGTGGCATCACGAAGGCTGCCTaGTCGGCGGAGGGGCCACCGGGCCCGAAGAGCAGGCTGGCGGCC +
Preference number: 6 (lower is better)
Translates to: WPPTSPSAGGITKAA*SAEGPPGPKSRLAA
Trigger: GGCCGCCAGCCTGCTCTTCGGGCCCGGTGGCCCCTCCGCCGACAAGGCAGCCTTCGTGATGCCACCCGCGCTGGGCGACGTGGGTGGCCA
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS CCA 72 bp GCCGCCCAGGTGGCCACCCACGTCGCCCAGCGCGGGTaGCATCACGAAGGCTGCCTTGTCGGCGGAGGGGCC +
Preference number: 6 (lower is better)
Translates to: AAQVATHVAQRG*HHEGCLVGGGA
Trigger: GGCCCCTCCGCCGACAAGGCAGCCTTCGTGATGCCACCCGCGCTGGGCGACGTGGGTGGCCACCTGGGCGGC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS CAA 72 bp CCGAAGAGCAGGCTGGCGGCCCTCCAGGCCGCGGGCTaGCGACCACGCCGGGGTCGTGCCATGCGGCAGCTC +
Preference number: 6 (lower is better)
Translates to: PKSRLAALQAAG*RPRRGRAMRQL
Trigger: GAGCTGCCGCATGGCACGACCCCGGCGTGGTCGCAAGCCCGCGGCCTGGAGGGCCGCCAGCCTGCTCTTCGG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS GCA 72 bp CGAAGAGCAGGCTGGCGGCCCTCCAGGCCGCGGGCTTaGGACCACGCCGGGGTCGTGCCATGCGGCAGCTCT +
Preference number: 6 (lower is better)
Translates to: RRAGWRPSRPRA*DHAGVVPCGSS
Trigger: AGAGCTGCCGCATGGCACGACCCCGGCGTGGTCGCAAGCCCGCGGCCTGGAGGGCCGCCAGCCTGCTCTTCG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS GCA 72 bp ACCCACGTCGCCCAGCGCGGGTGGCATCACGAAGGCTaGCTTGTCGGCGGAGGGGCCACCGGGCCCGAAGAG +
Preference number: 6 (lower is better)
Translates to: THVAQRGWHHEG*LVGGGATGPEE
Trigger: CTCTTCGGGCCCGGTGGCCCCTCCGCCGACAAGGCAGCCTTCGTGATGCCACCCGCGCTGGGCGACGTGGGT
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS CCA 72 bp CCGCCCAGGGGTCGGGCAATGGGAAGTAGGGCCGAGTaGCGGCCACGTTCTCGGCCAGCGCCAGGGCCAGGA +
Preference number: 6 (lower is better)
Translates to: PPRGRAMGSRAE*RPRSRPAPGPG
Trigger: TCCTGGCCCTGGCGCTGGCCGAGAACGTGGCCGCCACTCGGCCCTACTTCCCATTGCCCGACCCCTGGGCGG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS CAA 72 bp ACGTCGCCCAGCGCGGGTGGCATCACGAAGGCTGCCTaGTCGGCGGAGGGGCCACCGGGCCCGAAGAGCAGG +
Preference number: 6 (lower is better)
Translates to: TSPSAGGITKAA*SAEGPPGPKSR
Trigger: CCTGCTCTTCGGGCCCGGTGGCCCCTCCGCCGACAAGGCAGCCTTCGTGATGCCACCCGCGCTGGGCGACGT
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS GCA 72 bp CCTCCAGGCCGCGGGCTTGCGACCACGCCGGGGTCGTaGCATGCGGCAGCTCTGCCGTTTGATGTGGCGGTG +
Preference number: 6 (lower is better)
Translates to: PPGRGLATTPGS*HAAALPFDVAV
Trigger: CACCGCCACATCAAACGGCAGAGCTGCCGCATGGCACGACCCCGGCGTGGTCGCAAGCCCGCGGCCTGGAGG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS CCA 72 bp GAGGCCAGCCAGACCTGCCGCCCAGGGGTCGGGCAATaGGAAGTAGGGCCGAGTGGCGGCCACGTTCTCGGC +
Preference number: 6 (lower is better)
Translates to: EASQTCRPGVGQ*EVGPSGGHVLG
Trigger: GCCGAGAACGTGGCCGCCACTCGGCCCTACTTCCCATTGCCCGACCCCTGGGCGGCAGGTCTGGCTGGCCTC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS GCA 72 bp GCCAGGAGGCCACCCGCATTCCTCTCGGCCTCGAGCTaGGCCCGTCCAAACAGCTTCATCTGCGTCTCCTCG +
Preference number: 6 (lower is better)
Translates to: ARRPPAFLSASS*ARPNSFICVSS
Trigger: CGAGGAGACGCAGATGAAGCTGTTTGGACGGGCGCAGCTCGAGGCCGAGAGGAATGCGGGTGGCCTCCTGGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS CCA 72 bp GCCAGCACTGAGCGGTGTGTTCGGTACTCTTGCTCCTaGACCACCAGCAGCACGTCACACAGCAGCCCCGCG +
Preference number: 6 (lower is better)
Translates to: ASTERCVRYSCS*TTSSTSHSSPA
Trigger: CGCGGGGCTGCTGTGTGACGTGCTGCTGGTGGTCCAGGAGCAAGAGTACCGAACACACCGCTCAGTGCTGGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS CCA 72 bp TCCCGGATCACTCCCAAATGGCCAGGGCTTCCGGGCTaGAAGGAGTCGGGGAAGTCCCTGGGTGTGTCCGAA +
Preference number: 6 (lower is better)
Translates to: SRITPKWPGLPG*KESGKSLGVSE
Trigger: TTCGGACACACCCAGGGACTTCCCCGACTCCTTCCAGCCCGGAAGCCCTGGCCATTTGGGAGTGATCCGGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS GCA 72 bp TCGGCCTCGAGCTGCGCCCGTCCAAACAGCTTCATCTaGGTCTCCTCGAACTGCCTTTCCAGCTCCTGCAGG +
Preference number: 6 (lower is better)
Translates to: SASSCARPNSFI*VSSNCLSSSCR
Trigger: CCTGCAGGAGCTGGAAAGGCAGTTCGAGGAGACGCAGATGAAGCTGTTTGGACGGGCGCAGCTCGAGGCCGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS GCA 72 bp GCCCGTCCAAACAGCTTCATCTGCGTCTCCTCGAACTaGCTTTCCAGCTCCTGCAGGCTCAGGGTGCCCTTG +
Preference number: 6 (lower is better)
Translates to: ARPNSFICVSSN*LSSSCRLRVPL
Trigger: CAAGGGCACCCTGAGCCTGCAGGAGCTGGAAAGGCAGTTCGAGGAGACGCAGATGAAGCTGTTTGGACGGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS CCA 72 bp GGGCAGGTGATGTCCTGGGGGTCAGGCAAGTTTTCCTaGTCGGCAAAGTCCTCTGGGTCATCCTCCTCCTCC +
Preference number: 6 (lower is better)
Translates to: GQVMSWGSGKFS*SAKSSGSSSSS
Trigger: GGAGGAGGAGGATGACCCAGAGGACTTTGCCGACCAGGAAAACTTGCCTGACCCCCAGGACATCACCTGCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS GCA 72 bp ACTCAGGAAGTTGAGATAGGCACCATAGTCATTCTCTaGCTTGATGGGGCCCAGCGGCCCACCGGGCAGGTC +
Preference number: 6 (lower is better)
Translates to: TQEVEIGTIVIL*LDGAQRPTGQV
Trigger: GACCTGCCCGGTGGGCCGCTGGGCCCCATCAAGGCAGAGAATGACTATGGTGCCTATCTCAACTTCCTGAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS CAA 90 bp GGCGGGGCCAGCTCCTCTTTGTCCTCCTCCTTGATTTTGCGGTTCTaGATGACTAAATCCAGTGGCCCACTGTCCATGGGCTGCTCAGGC +
Preference number: 6 (lower is better)
Translates to: GGASSSLSSSLILRF*MTKSSGPLSMGCSG
Trigger: GCCTGAGCAGCCCATGGACAGTGGGCCACTGGATTTAGTCATCAAGAACCGCAAAATCAAGGAGGAGGACAAAGAGGAGCTGGCCCCGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS TCA 72 bp TGTCATCCTCCTCACCGACACTGCCTCCGGGCTCCATaGTCTCCAGGCACACATTCACGATGCACTGGATCT +
Preference number: 6 (lower is better)
Translates to: CHPPHRHCLRAP*SPGTHSRCTGS
Trigger: AGATCCAGTGCATCGTGAATGTGTGCCTGGAGATCATGGAGCCCGGAGGCAGTGTCGGTGAGGAGGATGACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS CCA 72 bp GGCTCCATGATCTCCAGGCACACATTCACGATGCACTaGATCTCCAGCATCCTGGCCGCATTGAGGATGTGC +
Preference number: 6 (lower is better)
Translates to: GSMISRHTFTMH*ISSILAALRMC
Trigger: GCACATCCTCAATGCGGCCAGGATGCTGGAGATCCAGTGCATCGTGAATGTGTGCCTGGAGATCATGGAGCC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS CCA 72 bp GGGGTCAGGCAAGTTTTCCTGGTCGGCAAAGTCCTCTaGGTCATCCTCCTCCTCCTCTTCTTCCTCTTCCTC +
Preference number: 6 (lower is better)
Translates to: GVRQVFLVGKVL*VILLLLFFLFL
Trigger: GAGGAAGAGGAAGAAGAGGAGGAGGAGGATGACCCAGAGGACTTTGCCGACCAGGAAAACTTGCCTGACCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS CAA 72 bp TTCACGATGCACTGGATCTCCAGCATCCTGGCCGCATaGAGGATGTGCTTGACGTTGGAGGCGGTGATGGTG +
Preference number: 6 (lower is better)
Translates to: FTMHWISSILAA*RMCLTLEAVMV
Trigger: CACCATCACCGCCTCCAACGTCAAGCACATCCTCAATGCGGCCAGGATGCTGGAGATCCAGTGCATCGTGAA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS CAA 90 bp GGGGCAAACGGAGATAAGGAGGGTCTTCTGTCAGGGATGTTGGCTTaGGGGTACAAGTTCTCCCTCAGCAGAGATTCAATGGAGAAGTCC +
Preference number: 6 (lower is better)
Translates to: GANGDKEGLLSGMLA*GYKFSLSRDSMEKS
Trigger: GGACTTCTCCATTGAATCTCTGCTGAGGGAGAACTTGTACCCCAAAGCCAACATCCCTGACAGAAGACCCTCCTTATCTCCGTTTGCCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS CAA 90 bp AATTCCGGGGCAAACGGAGATAAGGAGGGTCTTCTGTCAGGGATGTaGGCTTTGGGGTACAAGTTCTCCCTCAGCAGAGATTCAATGGAG +
Preference number: 6 (lower is better)
Translates to: NSGANGDKEGLLSGM*ALGYKFSLSRDSME
Trigger: CTCCATTGAATCTCTGCTGAGGGAGAACTTGTACCCCAAAGCCAACATCCCTGACAGAAGACCCTCCTTATCTCCGTTTGCCCCGGAATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS CAA 72 bp GCAAACGGAGATAAGGAGGGTCTTCTGTCAGGGATGTaGGCTTTGGGGTACAAGTTCTCCCTCAGCAGAGAT +
Preference number: 6 (lower is better)
Translates to: ANGDKEGLLSGM*ALGYKFSLSRD
Trigger: ATCTCTGCTGAGGGAGAACTTGTACCCCAAAGCCAACATCCCTGACAGAAGACCCTCCTTATCTCCGTTTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS CAA 72 bp AGCTCCTCTTTGTCCTCCTCCTTGATTTTGCGGTTCTaGATGACTAAATCCAGTGGCCCACTGTCCATGGGC +
Preference number: 6 (lower is better)
Translates to: SSSLSSSLILRF*MTKSSGPLSMG
Trigger: GCCCATGGACAGTGGGCCACTGGATTTAGTCATCAAGAACCGCAAAATCAAGGAGGAGGACAAAGAGGAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS CCA 72 bp CAAACGGAGATAAGGAGGGTCTTCTGTCAGGGATGTTaGCTTTGGGGTACAAGTTCTCCCTCAGCAGAGATT +
Preference number: 6 (lower is better)
Translates to: QTEIRRVFCQGC*LWGTSSPSAEI
Trigger: AATCTCTGCTGAGGGAGAACTTGTACCCCAAAGCCAACATCCCTGACAGAAGACCCTCCTTATCTCCGTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2
CDS CAA 72 bp GGAGATAAGGAGGGTCTTCTGTCAGGGATGTTGGCTTaGGGGTACAAGTTCTCCCTCAGCAGAGATTCAATG +
Preference number: 6 (lower is better)
Translates to: GDKEGLLSGMLA*GYKFSLSRDSM
Trigger: CATTGAATCTCTGCTGAGGGAGAACTTGTACCCCAAAGCCAACATCCCTGACAGAAGACCCTCCTTATCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058997.15
ENSMUST00000167921.2
ENSMUST00000236462.2