RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ZBTB7B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028042

Ensembl transcript IDs: ENSMUST00000029677.9, ENSMUST00000107432.8, ENSMUST00000107433.8, ENSMUST00000107435.8, ENSMUST00000126027.8

Found 285 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GCGAGCCAATCAGGCCACCCTGCCCTCCTCTTCTCCAGGACCCCATaGCTCAGCGTTGGAACTGGGTGGAGGGGGACTGGGATGGCTCCG +
Preference number: 1 (lower is better)
Translates to: ASQSGHPALLFSRTP*LSVGTGWRGTGMAP
Trigger: CGGAGCCATCCCAGTCCCCCTCCACCCAGTTCCAACGCTGAGTCATGGGGTCCTGGAGAAGAGGAGGGCAGGGTGGCCTGATTGGCTCGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR TCA 90 bp TACAGAACGGGGGTGGACTCAGTCCTAAGAGTGCCAGGCAAGGTCTaGGGAAAGGTTCCCTTACCTCTGGGTCTGCTCCGCAGCTCACTT +
Preference number: 1 (lower is better)
Translates to: YRTGVDSVLRVPGKV*GKVPLPLGLLRSSL
Trigger: AAGTGAGCTGCGGAGCAGACCCAGAGGTAAGGGAACCTTTCCTCAGACCTTGCCTGGCACTCTTAGGACTGAGTCCACCCCCGTTCTGTA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR-3UTR TCA 90 bp GGTAGCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTAGCCCGGGGGCGGCGTaGGTCAGGGGCAGCAAGCAG +
Preference number: 2 (lower is better)
Translates to: GSARPYRAWPPDGASLSASPGAA*VRGSKQ
Trigger: CTGCTTGCTGCCCCTGACTCACGCCGCCCCCGGGCT...AGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGCTACC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR-3UTR GCA 90 bp GCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTCCCTTGGGCGGAGACCTTCTaGTACCCCCAGGGGCGGGCG +
Preference number: 2 (lower is better)
Translates to: ALALTGHGHQMALACPLPWAETF*YPQGRA
Trigger: CGCCCGCCCCTGGGGGTAGCAGAAGGTCTCCGCCCA...AGGGAGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR-3UTR CCA 90 bp CTGCCCCGGGACGCGGGAGGGAAGAGGTGGAGAGCTCCCTTAGCTGGGCGGAGACCCCGTTGCTTGGCGTaGTGTCCCAGGCTGTTCCAG +
Preference number: 2 (lower is better)
Translates to: LPRDAGGKRWRAPLAGRRPRCLA*CPRLFQ
Trigger: CTGGAACAGCCTGGGACACCACGCCAAGCAACGGGG...TCTCCGCCCAGCTAAGGGAGCTCTCCACCTCTTCCCTCCCGCGTCCCGGGGCAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR-3UTR CCA 90 bp GGCCCCAGGGAGGGAGCGCCAGGAACAAGACATTCCCTGCCCCGGGACGCGGGACCCATGACTCAGCGTTaGAACTGGGTGGAGGGGGAC +
Preference number: 2 (lower is better)
Translates to: GPREGAPGTRHSLPRDAGPMTQR*NWVEGD
Trigger: GTCCCCCTCCACCCAGTTCCAACGCTGAGTCATGGG...TCCCGCGTCCCGGGGCAGGGAATGTCTTGTTCCTGGCGCTCCCTCCCTGGGGCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR-3UTR CCA 90 bp CTGCCCCGGGACGCGGGAGGGAAGAGGTGGAGAGCTCCCTTAGCTGGGCGGAGATGGGTGGAGGGGGACTaGGATGGCTCCGTCCTTACA +
Preference number: 2 (lower is better)
Translates to: LPRDAGGKRWRAPLAGRRWVEGD*DGSVLT
Trigger: TGTAAGGACGGAGCCATCCCAGTCCCCCTCCACCCA...TCTCCGCCCAGCTAAGGGAGCTCTCCACCTCTTCCCTCCCGCGTCCCGGGGCAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR-3UTR GCA 90 bp ACTGTTGGGGGTACCTGGGCAGCTGTGCAAATGGGCATGGAGGTGCATGGGGAGTGGGCGGAGACCTTCTaGTACCCCCAGGGGCGGGCG +
Preference number: 2 (lower is better)
Translates to: TVGGTWAAVQMGMEVHGEWAETF*YPQGRA
Trigger: CGCCCGCCCCTGGGGGTAGCAGAAGGTCTCCGCCCA...CTCCCCATGCACCTCCATGCCCATTTGCACAGCTGCCCAGGTACCCCCAACAGT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR-3UTR GCA 90 bp GCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTCCCTGAACAAGACATTCCCTaGCCCGGGACGCGGGAGGGA +
Preference number: 2 (lower is better)
Translates to: ALALTGHGHQMALACPLPEQDIP*PGTREG
Trigger: TCCCTCCCGCGTCCCGGGGCAGGGAATGTCTTGTTC...AGGGAGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR-3UTR CCA 90 bp GCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTCCCTGCGGGAGGGAAGAGGTaGAGAGCTCCCTTAGCTGGG +
Preference number: 2 (lower is better)
Translates to: ALALTGHGHQMALACPLPAGGKR*RAPLAG
Trigger: CCCAGCTAAGGGAGCTCTCCACCTCTTCCCTCCCGC...AGGGAGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR-3UTR CCA 90 bp GGTAGCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTCCCCGTTGCTTGGCGTaGTGTCCCAGGCTGTTCCAG +
Preference number: 2 (lower is better)
Translates to: GSARPYRAWPPDGASLSAPRCLA*CPRLFQ
Trigger: CTGGAACAGCCTGGGACACCACGCCAAGCAACGGGG...AGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGCTACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR-3UTR CCA 90 bp ACTGTTGGGGGTACCTGGGCAGCTGTGCAAATGGGCATGGAGGTGCATGGGGAGGAGCCCAGGCCGCAATaGGGGTCCAGCACCCAGCGA +
Preference number: 2 (lower is better)
Translates to: TVGGTWAAVQMGMEVHGEEPRPQ*GSSTQR
Trigger: TCGCTGGGTGCTGGACCCCCATTGCGGCCTGGGCTC...CTCCCCATGCACCTCCATGCCCATTTGCACAGCTGCCCAGGTACCCCCAACAGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR CAA 90 bp GGTAGCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTaGTCCGCTCCCTACAAGGCTACCTCAACCCCTCACCCCATCCCA +
Preference number: 2 (lower is better)
Translates to: GSARPYRAWPPDGAS*SAPYKATSTPHPIP
Trigger: TGGGATGGGGTGAGGGGTTGAGGTAGCCTTGTAGGGAGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGCTACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR-3UTR GCA 90 bp GGCCCCAGGGAGGGAGCGCCAGGAACAAGACATTCCCTGCCCCGGGACGCGGGAACCACTTGTTTTATGTaGTCCCCGTTGCTTGGCGTG +
Preference number: 2 (lower is better)
Translates to: GPREGAPGTRHSLPRDAGTTCFM*SPLLGV
Trigger: CACGCCAAGCAACGGGGAGCACATAAAACAAGTGGT...TCCCGCGTCCCGGGGCAGGGAATGTCTTGTTCCTGGCGCTCCCTCCCTGGGGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR-3UTR CCA 90 bp GGTAGCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTAGCGTTGGAACTGGGTaGAGGGGGACTGGGATGGCT +
Preference number: 2 (lower is better)
Translates to: GSARPYRAWPPDGASLSASVGTG*RGTGMA
Trigger: AGCCATCCCAGTCCCCCTCCACCCAGTTCCAACGCT...AGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGCTACC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR-3UTR TCA 90 bp GGCCCCAGGGAGGGAGCGCCAGGAACAAGACATTCCCTGCCCCGGGACGCGGGAAGAGGCGTTCGATTCTaGTACCAACAAGGTTCAGCA +
Preference number: 2 (lower is better)
Translates to: GPREGAPGTRHSLPRDAGRGVRF*YQQGSA
Trigger: TGCTGAACCTTGTTGGTATCAGAATCGAACGCCTCT...TCCCGCGTCCCGGGGCAGGGAATGTCTTGTTCCTGGCGCTCCCTCCCTGGGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR-3UTR CCA 90 bp GGTAGCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTTTCCCCAGTAGTGGCTaGGGACAGGGACCCACCTTT +
Preference number: 2 (lower is better)
Translates to: GSARPYRAWPPDGASLSAFPSSG*GQGPTF
Trigger: AAAGGTGGGTCCCTGTCCCCAGCCACTACTGGGGAA...AGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGCTACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR-3UTR CCA 90 bp ACTGTTGGGGGTACCTGGGCAGCTGTGCAAATGGGCATGGAGGTGCATGGGGAGAGCGTTGGAACTGGGTaGAGGGGGACTGGGATGGCT +
Preference number: 2 (lower is better)
Translates to: TVGGTWAAVQMGMEVHGESVGTG*RGTGMA
Trigger: AGCCATCCCAGTCCCCCTCCACCCAGTTCCAACGCT...CTCCCCATGCACCTCCATGCCCATTTGCACAGCTGCCCAGGTACCCCCAACAGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR-3UTR CCA 90 bp CCCTTACCTCTGGGTCTGCTCCGCAGCTCACTTTTCCCAGGGGCAAGTGAGTTGGCGGGAGGGAAGAGGTaGAGAGCTCCCTTAGCTGGG +
Preference number: 2 (lower is better)
Translates to: PLPLGLLRSSLFPGASELAGGKR*RAPLAG
Trigger: CCCAGCTAAGGGAGCTCTCCACCTCTTCCCTCCCGC...CAACTCACTTGCCCCTGGGAAAAGTGAGCTGCGGAGCAGACCCAGAGGTAAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR-3UTR GCA 90 bp AAGAGTGCCAGGCAAGGTCTGAGGAAAGGTTCCCTTACCTCTGGGTCTGCTCCGGAACAAGACATTCCCTaGCCCGGGACGCGGGAGGGA +
Preference number: 2 (lower is better)
Translates to: KSARQGLRKGSLTSGSAPEQDIP*PGTREG
Trigger: TCCCTCCCGCGTCCCGGGGCAGGGAATGTCTTGTTC...CGGAGCAGACCCAGAGGTAAGGGAACCTTTCCTCAGACCTTGCCTGGCACTCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR-3UTR CCA 90 bp AAGGAGAGAGAGTGGAGGCCACTGTCTCCACTCTCTGGGACTAAGCCCCAGGTTCCCCGTTGCTTGGCGTaGTGTCCCAGGCTGTTCCAG +
Preference number: 2 (lower is better)
Translates to: KEREWRPLSPLSGTKPQVPRCLA*CPRLFQ
Trigger: CTGGAACAGCCTGGGACACCACGCCAAGCAACGGGG...AACCTGGGGCTTAGTCCCAGAGAGTGGAGACAGTGGCCTCCACTCTCTCTCCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR-3UTR CCA 90 bp AAGCCCCAGCCTCCTAGAAACCCGCATAGCCGAAGTGGGACCCCACAAATCAGACCCCGTTGCTTGGCGTaGTGTCCCAGGCTGTTCCAG +
Preference number: 2 (lower is better)
Translates to: KPQPPRNPHSRSGTPQIRPRCLA*CPRLFQ
Trigger: CTGGAACAGCCTGGGACACCACGCCAAGCAACGGGG...TCTGATTTGTGGGGTCCCACTTCGGCTATGCGGGTTTCTAGGAGGCTGGGGCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR-3UTR CCA 90 bp AAGCCCCAGCCTCCTAGAAACCCGCATAGCCGAAGTGGGACCCCACAAATCAGAGTGCTCCCCGTTGCTTaGCGTGGTGTCCCAGGCTGT +
Preference number: 2 (lower is better)
Translates to: KPQPPRNPHSRSGTPQIRVLPVA*RGVPGC
Trigger: ACAGCCTGGGACACCACGCCAAGCAACGGGGAGCAC...TCTGATTTGTGGGGTCCCACTTCGGCTATGCGGGTTTCTAGGAGGCTGGGGCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR-3UTR CCA 90 bp CCCTTACCTCTGGGTCTGCTCCGCAGCTCACTTTTCCCAGGGGCAAGTGAGTTGTGGGTGGAGGGGGACTaGGATGGCTCCGTCCTTACA +
Preference number: 2 (lower is better)
Translates to: PLPLGLLRSSLFPGASELWVEGD*DGSVLT
Trigger: TGTAAGGACGGAGCCATCCCAGTCCCCCTCCACCCA...CAACTCACTTGCCCCTGGGAAAAGTGAGCTGCGGAGCAGACCCAGAGGTAAGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR-3UTR CCA 90 bp CCCTTACCTCTGGGTCTGCTCCGCAGCTCACTTTTCCCAGGGGCAAGTGAGTTGCCCATGACTCAGCGTTaGAACTGGGTGGAGGGGGAC +
Preference number: 2 (lower is better)
Translates to: PLPLGLLRSSLFPGASELPMTQR*NWVEGD
Trigger: GTCCCCCTCCACCCAGTTCCAACGCTGAGTCATGGG...CAACTCACTTGCCCCTGGGAAAAGTGAGCTGCGGAGCAGACCCAGAGGTAAGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR-3UTR TCA 90 bp GCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTCCCTAGAGGCGTTCGATTCTaGTACCAACAAGGTTCAGCA +
Preference number: 2 (lower is better)
Translates to: ALALTGHGHQMALACPLPRGVRF*YQQGSA
Trigger: TGCTGAACCTTGTTGGTATCAGAATCGAACGCCTCT...AGGGAGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR-3UTR TCA 90 bp ACTGTTGGGGGTACCTGGGCAGCTGTGCAAATGGGCATGGAGGTGCATGGGGAGGTGCCAGGCAAGGTCTaGGGAAAGGTTCCCTTACCT +
Preference number: 2 (lower is better)
Translates to: TVGGTWAAVQMGMEVHGEVPGKV*GKVPLP
Trigger: AGGTAAGGGAACCTTTCCTCAGACCTTGCCTGGCAC...CTCCCCATGCACCTCCATGCCCATTTGCACAGCTGCCCAGGTACCCCCAACAGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR-3UTR GCA 90 bp GGTAGCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTACCACTTGTTTTATGTaGTCCCCGTTGCTTGGCGTG +
Preference number: 2 (lower is better)
Translates to: GSARPYRAWPPDGASLSATTCFM*SPLLGV
Trigger: CACGCCAAGCAACGGGGAGCACATAAAACAAGTGGT...AGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGCTACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR-3UTR CCA 90 bp AAGAGTGCCAGGCAAGGTCTGAGGAAAGGTTCCCTTACCTCTGGGTCTGCTCCGTGGGTGGAGGGGGACTaGGATGGCTCCGTCCTTACA +
Preference number: 2 (lower is better)
Translates to: KSARQGLRKGSLTSGSAPWVEGD*DGSVLT
Trigger: TGTAAGGACGGAGCCATCCCAGTCCCCCTCCACCCA...CGGAGCAGACCCAGAGGTAAGGGAACCTTTCCTCAGACCTTGCCTGGCACTCTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR-3UTR CCA 90 bp AAGGAGAGAGAGTGGAGGCCACTGTCTCCACTCTCTGGGACTAAGCCCCAGGTTCCCATGACTCAGCGTTaGAACTGGGTGGAGGGGGAC +
Preference number: 2 (lower is better)
Translates to: KEREWRPLSPLSGTKPQVPMTQR*NWVEGD
Trigger: GTCCCCCTCCACCCAGTTCCAACGCTGAGTCATGGG...AACCTGGGGCTTAGTCCCAGAGAGTGGAGACAGTGGCCTCCACTCTCTCTCCTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR-3UTR CCA 90 bp AAGGAGAGAGAGTGGAGGCCACTGTCTCCACTCTCTGGGACTAAGCCCCAGGTTGGGCAGCTGTGCAAATaGGCATGGAGGTGCATGGGG +
Preference number: 2 (lower is better)
Translates to: KEREWRPLSPLSGTKPQVGQLCK*AWRCMG
Trigger: CCCCATGCACCTCCATGCCCATTTGCACAGCTGCCC...AACCTGGGGCTTAGTCCCAGAGAGTGGAGACAGTGGCCTCCACTCTCTCTCCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR-3UTR GCA 90 bp AAGGAGAGAGAGTGGAGGCCACTGTCTCCACTCTCTGGGACTAAGCCCCAGGTTGCAAGTGAGTTGCCTTaGCTAGCCACCATGTTGGCA +
Preference number: 2 (lower is better)
Translates to: KEREWRPLSPLSGTKPQVASELP*LATMLA
Trigger: TGCCAACATGGTGGCTAGGCAAGGCAACTCACTTGC...AACCTGGGGCTTAGTCCCAGAGAGTGGAGACAGTGGCCTCCACTCTCTCTCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR-3UTR TCA 90 bp CCCTTACCTCTGGGTCTGCTCCGCAGCTCACTTTTCCCAGGGGCAAGTGAGTTGAGAGGCGTTCGATTCTaGTACCAACAAGGTTCAGCA +
Preference number: 2 (lower is better)
Translates to: PLPLGLLRSSLFPGASELRGVRF*YQQGSA
Trigger: TGCTGAACCTTGTTGGTATCAGAATCGAACGCCTCT...CAACTCACTTGCCCCTGGGAAAAGTGAGCTGCGGAGCAGACCCAGAGGTAAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR-3UTR GCA 90 bp AAGCCCCAGCCTCCTAGAAACCCGCATAGCCGAAGTGGGACCCCACAAATCAGAACCACTTGTTTTATGTaGTCCCCGTTGCTTGGCGTG +
Preference number: 2 (lower is better)
Translates to: KPQPPRNPHSRSGTPQIRTTCFM*SPLLGV
Trigger: CACGCCAAGCAACGGGGAGCACATAAAACAAGTGGT...TCTGATTTGTGGGGTCCCACTTCGGCTATGCGGGTTTCTAGGAGGCTGGGGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR-3UTR TCA 90 bp AAGAGTGCCAGGCAAGGTCTGAGGAAAGGTTCCCTTACCTCTGGGTCTGCTCCGAGAGGCGTTCGATTCTaGTACCAACAAGGTTCAGCA +
Preference number: 2 (lower is better)
Translates to: KSARQGLRKGSLTSGSAPRGVRF*YQQGSA
Trigger: TGCTGAACCTTGTTGGTATCAGAATCGAACGCCTCT...CGGAGCAGACCCAGAGGTAAGGGAACCTTTCCTCAGACCTTGCCTGGCACTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR TCA 72 bp ATCCCACACCCAGCGCCCGCCAGCCCGGGGGCGGCGTaGGTCAGGGGCAGCAAGCAGCAGAGGCGGCTCCCG +
Preference number: 3 (lower is better)
Translates to: IPHPAPASPGAA*VRGSKQQRRLP
Trigger: CGGGAGCCGCCTCTGCTGCTTGCTGCCCCTGACTCACGCCGCCCCCGGGCTGGCGGGCGCTGGGTGTGGGAT
76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR-3UTR CAA 90 bp GGCCCCAGGGAGGGAGCGCCAGGAACAAGACATTCCCTGCCCCGGGACGCGGGACCCCATGACTCAGCGTaGGAACTGGGTGGAGGGGGA +
Preference number: 3 (lower is better)
Translates to: GPREGAPGTRHSLPRDAGPHDSA*ELGGGG
Trigger: TCCCCCTCCACCCAGTTCCAACGCTGAGTCATGGGG...TCCCGCGTCCCGGGGCAGGGAATGTCTTGTTCCTGGCGCTCCCTCCCTGGGGCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR GCA 72 bp GAGGTGGAGAGCTCCCTTAGCTGGGCGGAGACCTTCTaGTACCCCCAGGGGCGGGCGAGCCAATCAGGCCAC +
Preference number: 3 (lower is better)
Translates to: EVESSLSWAETF*YPQGRASQSGH
Trigger: GTGGCCTGATTGGCTCGCCCGCCCCTGGGGGTAGCAGAAGGTCTCCGCCCAGCTAAGGGAGCTCTCCACCTC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR CCA 72 bp CCCATGACTCAGCGTTGGAACTGGGTGGAGGGGGACTaGGATGGCTCCGTCCTTACAGGCCCAGTCCCCACC +
Preference number: 3 (lower is better)
Translates to: PMTQRWNWVEGD*DGSVLTGPVPT
Trigger: GGTGGGGACTGGGCCTGTAAGGACGGAGCCATCCCAGTCCCCCTCCACCCAGTTCCAACGCTGAGTCATGGG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR CCA 72 bp AGACATTCCCTGCCCCGGGACGCGGGAGGGAAGAGGTaGAGAGCTCCCTTAGCTGGGCGGAGACCTTCTGCT +
Preference number: 3 (lower is better)
Translates to: RHSLPRDAGGKR*RAPLAGRRPSA
Trigger: AGCAGAAGGTCTCCGCCCAGCTAAGGGAGCTCTCCACCTCTTCCCTCCCGCGTCCCGGGGCAGGGAATGTCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR-3UTR CAA 90 bp CCCTTACCTCTGGGTCTGCTCCGCAGCTCACTTTTCCCAGGGGCAAGTGAGTTGAGAGGCGGCTCCCGCTaGCACCTGGGCGGGGAGGTA +
Preference number: 3 (lower is better)
Translates to: PLPLGLLRSSLFPGASELRGGSR*HLGGEV
Trigger: TACCTCCCCGCCCAGGTGCAAGCGGGAGCCGCCTCT...CAACTCACTTGCCCCTGGGAAAAGTGAGCTGCGGAGCAGACCCAGAGGTAAGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR-3UTR CAA 90 bp AAGGAGAGAGAGTGGAGGCCACTGTCTCCACTCTCTGGGACTAAGCCCCAGGTTAGAGGCGGCTCCCGCTaGCACCTGGGCGGGGAGGTA +
Preference number: 3 (lower is better)
Translates to: KEREWRPLSPLSGTKPQVRGGSR*HLGGEV
Trigger: TACCTCCCCGCCCAGGTGCAAGCGGGAGCCGCCTCT...AACCTGGGGCTTAGTCCCAGAGAGTGGAGACAGTGGCCTCCACTCTCTCTCCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR-3UTR CAA 90 bp ACTGTTGGGGGTACCTGGGCAGCTGTGCAAATGGGCATGGAGGTGCATGGGGAGCCAGATGGCGCTAGCTaGTCCGCTCCCTACAAGGCT +
Preference number: 3 (lower is better)
Translates to: TVGGTWAAVQMGMEVHGEPDGAS*SAPYKA
Trigger: AGCCTTGTAGGGAGCGGACAAGCTAGCGCCATCTGG...CTCCCCATGCACCTCCATGCCCATTTGCACAGCTGCCCAGGTACCCCCAACAGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR CCA 72 bp CCTCTTCTCCAGGACCCCATGACTCAGCGTTGGAACTaGGTGGAGGGGGACTGGGATGGCTCCGTCCTTACA +
Preference number: 3 (lower is better)
Translates to: PLLQDPMTQRWN*VEGDWDGSVLT
Trigger: TGTAAGGACGGAGCCATCCCAGTCCCCCTCCACCCAGTTCCAACGCTGAGTCATGGGGTCCTGGAGAAGAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR TCA 72 bp GGGGTGGACTCAGTCCTAAGAGTGCCAGGCAAGGTCTaGGGAAAGGTTCCCTTACCTCTGGGTCTGCTCCGC +
Preference number: 3 (lower is better)
Translates to: GVDSVLRVPGKV*GKVPLPLGLLR
Trigger: GCGGAGCAGACCCAGAGGTAAGGGAACCTTTCCTCAGACCTTGCCTGGCACTCTTAGGACTGAGTCCACCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR-3UTR CAA 90 bp CTGCCCCGGGACGCGGGAGGGAAGAGGTGGAGAGCTCCCTTAGCTGGGCGGAGATTCATGTTTAACTCCTaGGGTGATCACCCCAATCTA +
Preference number: 3 (lower is better)
Translates to: LPRDAGGKRWRAPLAGRRFMFNS*GDHPNL
Trigger: TAGATTGGGGTGATCACCCAAGGAGTTAAACATGAA...TCTCCGCCCAGCTAAGGGAGCTCTCCACCTCTTCCCTCCCGCGTCCCGGGGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR-3UTR CAA 90 bp GGCCCCAGGGAGGGAGCGCCAGGAACAAGACATTCCCTGCCCCGGGACGCGGGAATCAGAGATAGATTATaGCTTCAATTCCCCAGTAGT +
Preference number: 3 (lower is better)
Translates to: GPREGAPGTRHSLPRDAGIRDRL*LQFPSS
Trigger: ACTACTGGGGAATTGAAGCAATAATCTATCTCTGAT...TCCCGCGTCCCGGGGCAGGGAATGTCTTGTTCCTGGCGCTCCCTCCCTGGGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR GCA 72 bp GCAAGGTCTGAGGAAAGGTTCCCTTACCTCTGGGTCTaGTCCGCAGCTCACTTTTCCCAGGGGCAAGTGAGT +
Preference number: 3 (lower is better)
Translates to: ARSEERFPYLWV*SAAHFSQGQVS
Trigger: ACTCACTTGCCCCTGGGAAAAGTGAGCTGCGGAGCAGACCCAGAGGTAAGGGAACCTTTCCTCAGACCTTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR-3UTR CAA 90 bp GGTAGCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTTTCATGTTTAACTCCTaGGGTGATCACCCCAATCTA +
Preference number: 3 (lower is better)
Translates to: GSARPYRAWPPDGASLSAFMFNS*GDHPNL
Trigger: TAGATTGGGGTGATCACCCAAGGAGTTAAACATGAA...AGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGCTACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR CCA 72 bp ATACCACTTGTTTTATGTGCTCCCCGTTGCTTGGCGTaGTGTCCCAGGCTGTTCCAGCCTGCCCATTCATCC +
Preference number: 3 (lower is better)
Translates to: IPLVLCAPRCLA*CPRLFQPAHSS
Trigger: GGATGAATGGGCAGGCTGGAACAGCCTGGGACACCACGCCAAGCAACGGGGAGCACATAAAACAAGTGGTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR-3UTR CAA 90 bp AAGGAGAGAGAGTGGAGGCCACTGTCTCCACTCTCTGGGACTAAGCCCCAGGTTTTCATGTTTAACTCCTaGGGTGATCACCCCAATCTA +
Preference number: 3 (lower is better)
Translates to: KEREWRPLSPLSGTKPQVFMFNS*GDHPNL
Trigger: TAGATTGGGGTGATCACCCAAGGAGTTAAACATGAA...AACCTGGGGCTTAGTCCCAGAGAGTGGAGACAGTGGCCTCCACTCTCTCTCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR-3UTR CAA 90 bp ACTGTTGGGGGTACCTGGGCAGCTGTGCAAATGGGCATGGAGGTGCATGGGGAGATCAGAGATAGATTATaGCTTCAATTCCCCAGTAGT +
Preference number: 3 (lower is better)
Translates to: TVGGTWAAVQMGMEVHGEIRDRL*LQFPSS
Trigger: ACTACTGGGGAATTGAAGCAATAATCTATCTCTGAT...CTCCCCATGCACCTCCATGCCCATTTGCACAGCTGCCCAGGTACCCCCAACAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR TCA 90 bp GGCCCCAGGGAGGGAGCGCCAGGAACAAGACATTCCCTGCCCCGGGACGCGGGAGAGGCCAGCAGGGGATaGGGTGGTGGTCGAGGGCGG +
Preference number: 4 (lower is better)
Translates to: GPREGAPGTRHSLPRDAGEASRG*GGGRGR
Trigger: CCGCCCTCGACCACCACCTCATCCCCTGCTGGCCTC...TCCCGCGTCCCGGGGCAGGGAATGTCTTGTTCCTGGCGCTCCCTCCCTGGGGCC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp GGCCCCAGGGAGGGAGCGCCAGGAACAAGACATTCCCTGCCCCGGGACGCGGGAGGTGGTCGAGGGCGGTaGGTAGTGAGGGGCTGCCAC +
Preference number: 4 (lower is better)
Translates to: GPREGAPGTRHSLPRDAGGGRGR*VVRGCH
Trigger: GTGGCAGCCCCTCACTACCCACCGCCCTCGACCACC...TCCCGCGTCCCGGGGCAGGGAATGTCTTGTTCCTGGCGCTCCCTCCCTGGGGCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp CTGCCCCGGGACGCGGGAGGGAAGAGGTGGAGAGCTCCCTTAGCTGGGCGGAGAACACACACCGGCCCCTaGTCCCCCAGAAGCCGTCCC +
Preference number: 4 (lower is better)
Translates to: LPRDAGGKRWRAPLAGRRTHTGP*SPRSRP
Trigger: GGGACGGCTTCTGGGGGAGCAGGGGCCGGTGTGTGT...TCTCCGCCCAGCTAAGGGAGCTCTCCACCTCTTCCCTCCCGCGTCCCGGGGCAG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp GGCCCCAGGGAGGGAGCGCCAGGAACAAGACATTCCCTGCCCCGGGACGCGGGACTGGGGGTCCCGTGGTaGCCGACTGCTCCCAGAATC +
Preference number: 4 (lower is better)
Translates to: GPREGAPGTRHSLPRDAGLGVPW*PTAPRI
Trigger: GATTCTGGGAGCAGTCGGCCACCACGGGACCCCCAG...TCCCGCGTCCCGGGGCAGGGAATGTCTTGTTCCTGGCGCTCCCTCCCTGGGGCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp GGCCCCAGGGAGGGAGCGCCAGGAACAAGACATTCCCTGCCCCGGGACGCGGGAGCACAGCCCTGTGGGTaGGGTACTCAAGACCCTGCG +
Preference number: 4 (lower is better)
Translates to: GPREGAPGTRHSLPRDAGAQPCG*GTQDPA
Trigger: CGCAGGGTCTTGAGTACCGCACCCACAGGGCTGTGC...TCCCGCGTCCCGGGGCAGGGAATGTCTTGTTCCTGGCGCTCCCTCCCTGGGGCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp CTGCCCCGGGACGCGGGAGGGAAGAGGTGGAGAGCTCCCTTAGCTGGGCGGAGATCCGGGGTTTGCGGCTaGGACGGGCAACAGGTCGAG +
Preference number: 4 (lower is better)
Translates to: LPRDAGGKRWRAPLAGRRSGVCG*DGQQVE
Trigger: CTCGACCTGTTGCCCGTCGCAGCCGCAAACCCCGGA...TCTCCGCCCAGCTAAGGGAGCTCTCCACCTCTTCCCTCCCGCGTCCCGGGGCAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp GGCCCCAGGGAGGGAGCGCCAGGAACAAGACATTCCCTGCCCCGGGACGCGGGACCCTTGAGATGGCGCTaGAGGTGGTCCTCCTTGGCG +
Preference number: 4 (lower is better)
Translates to: GPREGAPGTRHSLPRDAGPLRWR*RWSSLA
Trigger: CGCCAAGGAGGACCACCTGCAGCGCCATCTCAAGGG...TCCCGCGTCCCGGGGCAGGGAATGTCTTGTTCCTGGCGCTCCCTCCCTGGGGCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp CTGCCCCGGGACGCGGGAGGGAAGAGGTGGAGAGCTCCCTTAGCTGGGCGGAGATGCGGCGCCTTCGGGTaGGCACCTCCAGGCAGTTCT +
Preference number: 4 (lower is better)
Translates to: LPRDAGGKRWRAPLAGRRCGAFG*APPGSS
Trigger: AGAACTGCCTGGAGGTGCGCACCCGAAGGCGCCGCA...TCTCCGCCCAGCTAAGGGAGCTCTCCACCTCTTCCCTCCCGCGTCCCGGGGCAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp CCAGGGGCGGGCGAGCCAATCAGGCCACCCTGCCCTCCTCTTCTCCAGGACCCCCACAGATGGCCCAGCTaGCGCTGCTCGTTCAGGCAG +
Preference number: 4 (lower is better)
Translates to: PGAGEPIRPPCPPLLQDPHRWPS*RCSFRQ
Trigger: CTGCCTGAACGAGCAGCGCCAGCTGGGCCATCTGTG...GGGGTCCTGGAGAAGAGGAGGGCAGGGTGGCCTGATTGGCTCGCCCGCCCCTGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp CCAGGGGCGGGCGAGCCAATCAGGCCACCCTGCCCTCCTCTTCTCCAGGACCCCGCCAGCACAGCCCTGTaGGTGCGGTACTCAAGACCC +
Preference number: 4 (lower is better)
Translates to: PGAGEPIRPPCPPLLQDPASTAL*VRYSRP
Trigger: GGGTCTTGAGTACCGCACCCACAGGGCTGTGCTGGC...GGGGTCCTGGAGAAGAGGAGGGCAGGGTGGCCTGATTGGCTCGCCCGCCCCTGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp GGCCCCAGGGAGGGAGCGCCAGGAACAAGACATTCCCTGCCCCGGGACGCGGGACAGGGGATGAGGTGGTaGTCGAGGGCGGTGGGTAGT +
Preference number: 4 (lower is better)
Translates to: GPREGAPGTRHSLPRDAGQGMRW*SRAVGS
Trigger: ACTACCCACCGCCCTCGACCACCACCTCATCCCCTG...TCCCGCGTCCCGGGGCAGGGAATGTCTTGTTCCTGGCGCTCCCTCCCTGGGGCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp CCAGGGGCGGGCGAGCCAATCAGGCCACCCTGCCCTCCTCTTCTCCAGGACCCCCAGGGGATGAGGTGGTaGTCGAGGGCGGTGGGTAGT +
Preference number: 4 (lower is better)
Translates to: PGAGEPIRPPCPPLLQDPQGMRW*SRAVGS
Trigger: ACTACCCACCGCCCTCGACCACCACCTCATCCCCTG...GGGGTCCTGGAGAAGAGGAGGGCAGGGTGGCCTGATTGGCTCGCCCGCCCCTGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp GCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTCCCTACACACACCGGCCCCTaGTCCCCCAGAAGCCGTCCC +
Preference number: 4 (lower is better)
Translates to: ALALTGHGHQMALACPLPTHTGP*SPRSRP
Trigger: GGGACGGCTTCTGGGGGAGCAGGGGCCGGTGTGTGT...AGGGAGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp GGCCCCAGGGAGGGAGCGCCAGGAACAAGACATTCCCTGCCCCGGGACGCGGGAAAGCTTTCCGGGGTTTaGGGCTGCGACGGGCAACAG +
Preference number: 4 (lower is better)
Translates to: GPREGAPGTRHSLPRDAGKLSGV*GCDGQQ
Trigger: CTGTTGCCCGTCGCAGCCGCAAACCCCGGAAAGCTT...TCCCGCGTCCCGGGGCAGGGAATGTCTTGTTCCTGGCGCTCCCTCCCTGGGGCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp CTGCCCCGGGACGCGGGAGGGAAGAGGTGGAGAGCTCCCTTAGCTGGGCGGAGAGCCAGCACAGCCCTGTaGGTGCGGTACTCAAGACCC +
Preference number: 4 (lower is better)
Translates to: LPRDAGGKRWRAPLAGRRASTAL*VRYSRP
Trigger: GGGTCTTGAGTACCGCACCCACAGGGCTGTGCTGGC...TCTCCGCCCAGCTAAGGGAGCTCTCCACCTCTTCCCTCCCGCGTCCCGGGGCAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp CCAGGGGCGGGCGAGCCAATCAGGCCACCCTGCCCTCCTCTTCTCCAGGACCCCCGCACCAGCTTGTCTTaGCCATCCAGGCCTGGTGTC +
Preference number: 4 (lower is better)
Translates to: PGAGEPIRPPCPPLLQDPRTSLS*PSRPGV
Trigger: GACACCAGGCCTGGATGGCCAAGACAAGCTGGTGCG...GGGGTCCTGGAGAAGAGGAGGGCAGGGTGGCCTGATTGGCTCGCCCGCCCCTGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp CTGCCCCGGGACGCGGGAGGGAAGAGGTGGAGAGCTCCCTTAGCTGGGCGGAGAATGCAGGAAGCGGGCTaGGCAGTGGGGGCACGAGTA +
Preference number: 4 (lower is better)
Translates to: LPRDAGGKRWRAPLAGRRMQEAG*AVGARV
Trigger: TACTCGTGCCCCCACTGCCCAGCCCGCTTCCTGCAT...TCTCCGCCCAGCTAAGGGAGCTCTCCACCTCTTCCCTCCCGCGTCCCGGGGCAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR TCA 90 bp CCAGGGGCGGGCGAGCCAATCAGGCCACCCTGCCCTCCTCTTCTCCAGGACCCCAGGTCAAGGGATGGGTaGGTACTGTGGGTGCCTCAG +
Preference number: 4 (lower is better)
Translates to: PGAGEPIRPPCPPLLQDPRSRDG*VLWVPQ
Trigger: CTGAGGCACCCACAGTACTCACCCATCCCTTGACCT...GGGGTCCTGGAGAAGAGGAGGGCAGGGTGGCCTGATTGGCTCGCCCGCCCCTGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR TCA 90 bp CTGCCCCGGGACGCGGGAGGGAAGAGGTGGAGAGCTCCCTTAGCTGGGCGGAGAGGCAGTTCTGACCCTTaGGATGGCGCTGCAGGTGGT +
Preference number: 4 (lower is better)
Translates to: LPRDAGGKRWRAPLAGRRGSSDP*DGAAGG
Trigger: ACCACCTGCAGCGCCATCTCAAGGGTCAGAACTGCC...TCTCCGCCCAGCTAAGGGAGCTCTCCACCTCTTCCCTCCCGCGTCCCGGGGCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp CCAGGGGCGGGCGAGCCAATCAGGCCACCCTGCCCTCCTCTTCTCCAGGACCCCCGGTACTCAAGACCCTaGGTCCTGATGGTGAGGTCG +
Preference number: 4 (lower is better)
Translates to: PGAGEPIRPPCPPLLQDPRYSRP*VLMVRS
Trigger: CGACCTCACCATCAGGACGCAGGGTCTTGAGTACCG...GGGGTCCTGGAGAAGAGGAGGGCAGGGTGGCCTGATTGGCTCGCCCGCCCCTGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp GGTAGCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTACACACACCGGCCCCTaGTCCCCCAGAAGCCGTCCC +
Preference number: 4 (lower is better)
Translates to: GSARPYRAWPPDGASLSATHTGP*SPRSRP
Trigger: GGGACGGCTTCTGGGGGAGCAGGGGCCGGTGTGTGT...AGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGCTACC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp GGCCCCAGGGAGGGAGCGCCAGGAACAAGACATTCCCTGCCCCGGGACGCGGGATCCCCGGTGTGCAGGTaGATGTGGTTCTTGAGGTCG +
Preference number: 4 (lower is better)
Translates to: GPREGAPGTRHSLPRDAGSPVCR*MWFLRS
Trigger: CGACCTCAAGAACCACATGCACCTGCACACCGGGGA...TCCCGCGTCCCGGGGCAGGGAATGTCTTGTTCCTGGCGCTCCCTCCCTGGGGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp GCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTCCCTTGCGGCGCCTTCGGGTaGGCACCTCCAGGCAGTTCT +
Preference number: 4 (lower is better)
Translates to: ALALTGHGHQMALACPLPCGAFG*APPGSS
Trigger: AGAACTGCCTGGAGGTGCGCACCCGAAGGCGCCGCA...AGGGAGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp CTGCCCCGGGACGCGGGAGGGAAGAGGTGGAGAGCTCCCTTAGCTGGGCGGAGAGCAGGTGGTCCTCCTTaGCGAAGGCCTTGTGGCACA +
Preference number: 4 (lower is better)
Translates to: LPRDAGGKRWRAPLAGRRAGGPP*RRPCGT
Trigger: TGTGCCACAAGGCCTTCGCCAAGGAGGACCACCTGC...TCTCCGCCCAGCTAAGGGAGCTCTCCACCTCTTCCCTCCCGCGTCCCGGGGCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp GCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTCCCTCAGCAGGGGATGAGGTaGTGGTCGAGGGCGGTGGGT +
Preference number: 4 (lower is better)
Translates to: ALALTGHGHQMALACPLPQQGMR*WSRAVG
Trigger: ACCCACCGCCCTCGACCACCACCTCATCCCCTGCTG...AGGGAGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp CCAGGGGCGGGCGAGCCAATCAGGCCACCCTGCCCTCCTCTTCTCCAGGACCCCCTTCGGCCTGTGGTGTaGTGGGTGTCCCTTCCTCTT +
Preference number: 4 (lower is better)
Translates to: PGAGEPIRPPCPPLLQDPLRPVV*WVSLPL
Trigger: AAGAGGAAGGGACACCCACCACACCACAGGCCGAAG...GGGGTCCTGGAGAAGAGGAGGGCAGGGTGGCCTGATTGGCTCGCCCGCCCCTGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp CCAGGGGCGGGCGAGCCAATCAGGCCACCCTGCCCTCCTCTTCTCCAGGACCCCGGGCTTCCAGCCCACTaGCTTGTAGAATCTCCATGC +
Preference number: 4 (lower is better)
Translates to: PGAGEPIRPPCPPLLQDPGLPAH*LVESPC
Trigger: GCATGGAGATTCTACAAGGCAGTGGGCTGGAAGCCC...GGGGTCCTGGAGAAGAGGAGGGCAGGGTGGCCTGATTGGCTCGCCCGCCCCTGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp GGCCCCAGGGAGGGAGCGCCAGGAACAAGACATTCCCTGCCCCGGGACGCGGGATATCTCCGAGCCCACTaGCCCCACTGTTACCCAATC +
Preference number: 4 (lower is better)
Translates to: GPREGAPGTRHSLPRDAGYLRAH*PHCYPI
Trigger: GATTGGGTAACAGTGGGGGCAGTGGGCTCGGAGATA...TCCCGCGTCCCGGGGCAGGGAATGTCTTGTTCCTGGCGCTCCCTCCCTGGGGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp GGCCCCAGGGAGGGAGCGCCAGGAACAAGACATTCCCTGCCCCGGGACGCGGGACCGAGGCAGTTTGCCTaGCCCGTGGATTATCTTGTG +
Preference number: 4 (lower is better)
Translates to: GPREGAPGTRHSLPRDAGPRQFA*PVDYLV
Trigger: CACAAGATAATCCACGGGGCAGGCAAACTGCCTCGG...TCCCGCGTCCCGGGGCAGGGAATGTCTTGTTCCTGGCGCTCCCTCCCTGGGGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp GCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTCCCTCCCGTGGTGGCCGACTaGTCCCAGAATCGAGCCAGA +
Preference number: 4 (lower is better)
Translates to: ALALTGHGHQMALACPLPPVVAD*SQNRAR
Trigger: TCTGGCTCGATTCTGGGAGCAGTCGGCCACCACGGG...AGGGAGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp GGTAGCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTGTGAGGTCGCACAGATaGCCCAGCTGGCGCTGCTCG +
Preference number: 4 (lower is better)
Translates to: GSARPYRAWPPDGASLSAVRSHR*PSWRCS
Trigger: CGAGCAGCGCCAGCTGGGCCATCTGTGCGACCTCAC...AGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGCTACC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp CTGCCCCGGGACGCGGGAGGGAAGAGGTGGAGAGCTCCCTTAGCTGGGCGGAGAGTACAGCCGGCATATTaGCGCTGCTGGTGGTCAGTG +
Preference number: 4 (lower is better)
Translates to: LPRDAGGKRWRAPLAGRRVQPAY*RCWWSV
Trigger: CACTGACCACCAGCAGCGCCAATATGCCGGCTGTAC...TCTCCGCCCAGCTAAGGGAGCTCTCCACCTCTTCCCTCCCGCGTCCCGGGGCAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp GGCCCCAGGGAGGGAGCGCCAGGAACAAGACATTCCCTGCCCCGGGACGCGGGACTGTGGTGGTGGCAGTaGCAAAAGCCTCCAGGTACT +
Preference number: 4 (lower is better)
Translates to: GPREGAPGTRHSLPRDAGLWWWQ*QKPPGT
Trigger: AGTACCTGGAGGCTTTTGCCACTGCCACCACCACAG...TCCCGCGTCCCGGGGCAGGGAATGTCTTGTTCCTGGCGCTCCCTCCCTGGGGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp GGCCCCAGGGAGGGAGCGCCAGGAACAAGACATTCCCTGCCCCGGGACGCGGGATCAGGTCGGGGTCGATaGGATCTTCATCTGAGCCCA +
Preference number: 4 (lower is better)
Translates to: GPREGAPGTRHSLPRDAGSGRGR*DLHLSP
Trigger: TGGGCTCAGATGAAGATCCCATCGACCCCGACCTGA...TCCCGCGTCCCGGGGCAGGGAATGTCTTGTTCCTGGCGCTCCCTCCCTGGGGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp GCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTCCCTATGCAGGAAGCGGGCTaGGCAGTGGGGGCACGAGTA +
Preference number: 4 (lower is better)
Translates to: ALALTGHGHQMALACPLPMQEAG*AVGARV
Trigger: TACTCGTGCCCCCACTGCCCAGCCCGCTTCCTGCAT...AGGGAGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp CCAGGGGCGGGCGAGCCAATCAGGCCACCCTGCCCTCCTCTTCTCCAGGACCCCTGGAAGGTGTCCAGGTaGCCATTGGAAAGGTCGAGG +
Preference number: 4 (lower is better)
Translates to: PGAGEPIRPPCPPLLQDPWKVSR*PLERSR
Trigger: CCTCGACCTTTCCAATGGCCACCTGGACACCTTCCA...GGGGTCCTGGAGAAGAGGAGGGCAGGGTGGCCTGATTGGCTCGCCCGCCCCTGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR TCA 90 bp GCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTCCCTGGCAGTTCTGACCCTTaGGATGGCGCTGCAGGTGGT +
Preference number: 4 (lower is better)
Translates to: ALALTGHGHQMALACPLPGSSDP*DGAAGG
Trigger: ACCACCTGCAGCGCCATCTCAAGGGTCAGAACTGCC...AGGGAGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp CTGCCCCGGGACGCGGGAGGGAAGAGGTGGAGAGCTCCCTTAGCTGGGCGGAGAGGGCTTCCAGCCCACTaGCTTGTAGAATCTCCATGC +
Preference number: 4 (lower is better)
Translates to: LPRDAGGKRWRAPLAGRRGLPAH*LVESPC
Trigger: GCATGGAGATTCTACAAGGCAGTGGGCTGGAAGCCC...TCTCCGCCCAGCTAAGGGAGCTCTCCACCTCTTCCCTCCCGCGTCCCGGGGCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp GGTAGCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTCCCTTGAGATGGCGCTaGAGGTGGTCCTCCTTGGCG +
Preference number: 4 (lower is better)
Translates to: GSARPYRAWPPDGASLSAPLRWR*RWSSLA
Trigger: CGCCAAGGAGGACCACCTGCAGCGCCATCTCAAGGG...AGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGCTACC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp GGTAGCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTCCCGTGGTGGCCGACTaGTCCCAGAATCGAGCCAGA +
Preference number: 4 (lower is better)
Translates to: GSARPYRAWPPDGASLSAPVVAD*SQNRAR
Trigger: TCTGGCTCGATTCTGGGAGCAGTCGGCCACCACGGG...AGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGCTACC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp CTGCCCCGGGACGCGGGAGGGAAGAGGTGGAGAGCTCCCTTAGCTGGGCGGAGAAGGAGCTCGCTGCTGTaGTCTGGGAATGGGATTCCA +
Preference number: 4 (lower is better)
Translates to: LPRDAGGKRWRAPLAGRRRSSLL*SGNGIP
Trigger: TGGAATCCCATTCCCAGACCACAGCAGCGAGCTCCT...TCTCCGCCCAGCTAAGGGAGCTCTCCACCTCTTCCCTCCCGCGTCCCGGGGCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp GGTAGCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTGCCAGCACAGCCCTGTaGGTGCGGTACTCAAGACCC +
Preference number: 4 (lower is better)
Translates to: GSARPYRAWPPDGASLSAASTAL*VRYSRP
Trigger: GGGTCTTGAGTACCGCACCCACAGGGCTGTGCTGGC...AGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGCTACC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp CCAGGGGCGGGCGAGCCAATCAGGCCACCCTGCCCTCCTCTTCTCCAGGACCCCTATTGGCGCTGCTGGTaGTCAGTGTGGCTGTGTAAG +
Preference number: 4 (lower is better)
Translates to: PGAGEPIRPPCPPLLQDPYWRCW*SVWLCK
Trigger: CTTACACAGCCACACTGACCACCAGCAGCGCCAATA...GGGGTCCTGGAGAAGAGGAGGGCAGGGTGGCCTGATTGGCTCGCCCGCCCCTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp CTGCCCCGGGACGCGGGAGGGAAGAGGTGGAGAGCTCCCTTAGCTGGGCGGAGAGCATATTGGCGCTGCTaGTGGTCAGTGTGGCTGTGT +
Preference number: 4 (lower is better)
Translates to: LPRDAGGKRWRAPLAGRRAYWRC*WSVWLC
Trigger: ACACAGCCACACTGACCACCAGCAGCGCCAATATGC...TCTCCGCCCAGCTAAGGGAGCTCTCCACCTCTTCCCTCCCGCGTCCCGGGGCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp CCAGGGGCGGGCGAGCCAATCAGGCCACCCTGCCCTCCTCTTCTCCAGGACCCCAGTAGCCGAGCAGCTTaGAGTACAGCCGGCATATTG +
Preference number: 4 (lower is better)
Translates to: PGAGEPIRPPCPPLLQDPSSRAA*STAGIL
Trigger: CAATATGCCGGCTGTACTCCAAGCTGCTCGGCTACT...GGGGTCCTGGAGAAGAGGAGGGCAGGGTGGCCTGATTGGCTCGCCCGCCCCTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp CTGCCCCGGGACGCGGGAGGGAAGAGGTGGAGAGCTCCCTTAGCTGGGCGGAGATCAGGTCGGGGTCGATaGGATCTTCATCTGAGCCCA +
Preference number: 4 (lower is better)
Translates to: LPRDAGGKRWRAPLAGRRSGRGR*DLHLSP
Trigger: TGGGCTCAGATGAAGATCCCATCGACCCCGACCTGA...TCTCCGCCCAGCTAAGGGAGCTCTCCACCTCTTCCCTCCCGCGTCCCGGGGCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp GGTAGCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTAGATGGCGCTGCAGGTaGTCCTCCTTGGCGAAGGCC +
Preference number: 4 (lower is better)
Translates to: GSARPYRAWPPDGASLSARWRCR*SSLAKA
Trigger: GGCCTTCGCCAAGGAGGACCACCTGCAGCGCCATCT...AGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGCTACC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp TTTTATGTGCTCCCCGTTGCTTGGCGTGGTGTCCCAGGCTGTTCCAGCCTGCCCGGTGGTCGAGGGCGGTaGGTAGTGAGGGGCTGCCAC +
Preference number: 4 (lower is better)
Translates to: FYVLPVAWRGVPGCSSLPGGRGR*VVRGCH
Trigger: GTGGCAGCCCCTCACTACCCACCGCCCTCGACCACC...GGGCAGGCTGGAACAGCCTGGGACACCACGCCAAGCAACGGGGAGCACATAAAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp ACTGTTGGGGGTACCTGGGCAGCTGTGCAAATGGGCATGGAGGTGCATGGGGAGGGTGGTCGAGGGCGGTaGGTAGTGAGGGGCTGCCAC +
Preference number: 4 (lower is better)
Translates to: TVGGTWAAVQMGMEVHGEGGRGR*VVRGCH
Trigger: GTGGCAGCCCCTCACTACCCACCGCCCTCGACCACC...CTCCCCATGCACCTCCATGCCCATTTGCACAGCTGCCCAGGTACCCCCAACAGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp GCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTCCCTCGAGCCAGAGAGAGGTaGAAGGTGTCCAGGTGGCCA +
Preference number: 4 (lower is better)
Translates to: ALALTGHGHQMALACPLPRARER*KVSRWP
Trigger: TGGCCACCTGGACACCTTCCACCTCTCTCTGGCTCG...AGGGAGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR TCA 90 bp CTGCCCCGGGACGCGGGAGGGAAGAGGTGGAGAGCTCCCTTAGCTGGGCGGAGACCATGCAAGCAGCGATaGCACACGGGATTTCCAGTA +
Preference number: 4 (lower is better)
Translates to: LPRDAGGKRWRAPLAGRRPCKQR*HTGFPV
Trigger: TACTGGAAATCCCGTGTGTCATCGCTGCTTGCATGG...TCTCCGCCCAGCTAAGGGAGCTCTCCACCTCTTCCCTCCCGCGTCCCGGGGCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR TCA 90 bp AAGAGTGCCAGGCAAGGTCTGAGGAAAGGTTCCCTTACCTCTGGGTCTGCTCCGGAGGCCAGCAGGGGATaGGGTGGTGGTCGAGGGCGG +
Preference number: 4 (lower is better)
Translates to: KSARQGLRKGSLTSGSAPEASRG*GGGRGR
Trigger: CCGCCCTCGACCACCACCTCATCCCCTGCTGGCCTC...CGGAGCAGACCCAGAGGTAAGGGAACCTTTCCTCAGACCTTGCCTGGCACTCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR TCA 90 bp AAGGAGAGAGAGTGGAGGCCACTGTCTCCACTCTCTGGGACTAAGCCCCAGGTTGAGGCCAGCAGGGGATaGGGTGGTGGTCGAGGGCGG +
Preference number: 4 (lower is better)
Translates to: KEREWRPLSPLSGTKPQVEASRG*GGGRGR
Trigger: CCGCCCTCGACCACCACCTCATCCCCTGCTGGCCTC...AACCTGGGGCTTAGTCCCAGAGAGTGGAGACAGTGGCCTCCACTCTCTCTCCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp GCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTCCCTCGGTACTCAAGACCCTaGGTCCTGATGGTGAGGTCG +
Preference number: 4 (lower is better)
Translates to: ALALTGHGHQMALACPLPRYSRP*VLMVRS
Trigger: CGACCTCACCATCAGGACGCAGGGTCTTGAGTACCG...AGGGAGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp GGTAGCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTCCGGCATATTGGCGCTaGTGGTGGTCAGTGTGGCTG +
Preference number: 4 (lower is better)
Translates to: GSARPYRAWPPDGASLSAPAYWR*WWSVWL
Trigger: CAGCCACACTGACCACCAGCAGCGCCAATATGCCGG...AGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGCTACC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp TTTTATGTGCTCCCCGTTGCTTGGCGTGGTGTCCCAGGCTGTTCCAGCCTGCCCTCCGGGGTTTGCGGCTaGGACGGGCAACAGGTCGAG +
Preference number: 4 (lower is better)
Translates to: FYVLPVAWRGVPGCSSLPSGVCG*DGQQVE
Trigger: CTCGACCTGTTGCCCGTCGCAGCCGCAAACCCCGGA...GGGCAGGCTGGAACAGCCTGGGACACCACGCCAAGCAACGGGGAGCACATAAAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp ACTGTTGGGGGTACCTGGGCAGCTGTGCAAATGGGCATGGAGGTGCATGGGGAGTCCGGGGTTTGCGGCTaGGACGGGCAACAGGTCGAG +
Preference number: 4 (lower is better)
Translates to: TVGGTWAAVQMGMEVHGESGVCG*DGQQVE
Trigger: CTCGACCTGTTGCCCGTCGCAGCCGCAAACCCCGGA...CTCCCCATGCACCTCCATGCCCATTTGCACAGCTGCCCAGGTACCCCCAACAGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp TTTTATGTGCTCCCCGTTGCTTGGCGTGGTGTCCCAGGCTGTTCCAGCCTGCCCGTGAGGTCGCACAGATaGCCCAGCTGGCGCTGCTCG +
Preference number: 4 (lower is better)
Translates to: FYVLPVAWRGVPGCSSLPVRSHR*PSWRCS
Trigger: CGAGCAGCGCCAGCTGGGCCATCTGTGCGACCTCAC...GGGCAGGCTGGAACAGCCTGGGACACCACGCCAAGCAACGGGGAGCACATAAAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp CTGCCCCGGGACGCGGGAGGGAAGAGGTGGAGAGCTCCCTTAGCTGGGCGGAGATATTGGCGCTGCTGGTaGTCAGTGTGGCTGTGTAAG +
Preference number: 4 (lower is better)
Translates to: LPRDAGGKRWRAPLAGRRYWRCW*SVWLCK
Trigger: CTTACACAGCCACACTGACCACCAGCAGCGCCAATA...TCTCCGCCCAGCTAAGGGAGCTCTCCACCTCTTCCCTCCCGCGTCCCGGGGCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp GGTAGCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTCGCACCAGCTTGTCTTaGCCATCCAGGCCTGGTGTC +
Preference number: 4 (lower is better)
Translates to: GSARPYRAWPPDGASLSARTSLS*PSRPGV
Trigger: GACACCAGGCCTGGATGGCCAAGACAAGCTGGTGCG...AGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGCTACC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp TTTTATGTGCTCCCCGTTGCTTGGCGTGGTGTCCCAGGCTGTTCCAGCCTGCCCCAGCAGGGGATGAGGTaGTGGTCGAGGGCGGTGGGT +
Preference number: 4 (lower is better)
Translates to: FYVLPVAWRGVPGCSSLPQQGMR*WSRAVG
Trigger: ACCCACCGCCCTCGACCACCACCTCATCCCCTGCTG...GGGCAGGCTGGAACAGCCTGGGACACCACGCCAAGCAACGGGGAGCACATAAAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp GCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTCCCTCTTCGGCCTGTGGTGTaGTGGGTGTCCCTTCCTCTT +
Preference number: 4 (lower is better)
Translates to: ALALTGHGHQMALACPLPLRPVV*WVSLPL
Trigger: AAGAGGAAGGGACACCCACCACACCACAGGCCGAAG...AGGGAGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp GCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTCCCTGGGCTTCCAGCCCACTaGCTTGTAGAATCTCCATGC +
Preference number: 4 (lower is better)
Translates to: ALALTGHGHQMALACPLPGLPAH*LVESPC
Trigger: GCATGGAGATTCTACAAGGCAGTGGGCTGGAAGCCC...AGGGAGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp CCCTTACCTCTGGGTCTGCTCCGCAGCTCACTTTTCCCAGGGGCAAGTGAGTTGTCCGGGGTTTGCGGCTaGGACGGGCAACAGGTCGAG +
Preference number: 4 (lower is better)
Translates to: PLPLGLLRSSLFPGASELSGVCG*DGQQVE
Trigger: CTCGACCTGTTGCCCGTCGCAGCCGCAAACCCCGGA...CAACTCACTTGCCCCTGGGAAAAGTGAGCTGCGGAGCAGACCCAGAGGTAAGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp GCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTCCCTTATCTCCGAGCCCACTaGCCCCACTGTTACCCAATC +
Preference number: 4 (lower is better)
Translates to: ALALTGHGHQMALACPLPYLRAH*PHCYPI
Trigger: GATTGGGTAACAGTGGGGGCAGTGGGCTCGGAGATA...AGGGAGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp TTTTATGTGCTCCCCGTTGCTTGGCGTGGTGTCCCAGGCTGTTCCAGCCTGCCCCCCTTGAGATGGCGCTaGAGGTGGTCCTCCTTGGCG +
Preference number: 4 (lower is better)
Translates to: FYVLPVAWRGVPGCSSLPPLRWR*RWSSLA
Trigger: CGCCAAGGAGGACCACCTGCAGCGCCATCTCAAGGG...GGGCAGGCTGGAACAGCCTGGGACACCACGCCAAGCAACGGGGAGCACATAAAA
62% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp CTGCCCCGGGACGCGGGAGGGAAGAGGTGGAGAGCTCCCTTAGCTGGGCGGAGAGCTGTGGTCTGGGAATaGGATTCCAATCAGGTCATC +
Preference number: 4 (lower is better)
Translates to: LPRDAGGKRWRAPLAGRRAVVWE*DSNQVI
Trigger: GATGACCTGATTGGAATCCCATTCCCAGACCACAGC...TCTCCGCCCAGCTAAGGGAGCTCTCCACCTCTTCCCTCCCGCGTCCCGGGGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp CCCTTACCTCTGGGTCTGCTCCGCAGCTCACTTTTCCCAGGGGCAAGTGAGTTGGTGAGGTCGCACAGATaGCCCAGCTGGCGCTGCTCG +
Preference number: 4 (lower is better)
Translates to: PLPLGLLRSSLFPGASELVRSHR*PSWRCS
Trigger: CGAGCAGCGCCAGCTGGGCCATCTGTGCGACCTCAC...CAACTCACTTGCCCCTGGGAAAAGTGAGCTGCGGAGCAGACCCAGAGGTAAGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp CTGCCCCGGGACGCGGGAGGGAAGAGGTGGAGAGCTCCCTTAGCTGGGCGGAGATGCTGGTGGTCAGTGTaGCTGTGTAAGCAAACTCGA +
Preference number: 4 (lower is better)
Translates to: LPRDAGGKRWRAPLAGRRCWWSV*LCKQTR
Trigger: TCGAGTTTGCTTACACAGCCACACTGACCACCAGCA...TCTCCGCCCAGCTAAGGGAGCTCTCCACCTCTTCCCTCCCGCGTCCCGGGGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp ACTGTTGGGGGTACCTGGGCAGCTGTGCAAATGGGCATGGAGGTGCATGGGGAGATGCAGGAAGCGGGCTaGGCAGTGGGGGCACGAGTA +
Preference number: 4 (lower is better)
Translates to: TVGGTWAAVQMGMEVHGEMQEAG*AVGARV
Trigger: TACTCGTGCCCCCACTGCCCAGCCCGCTTCCTGCAT...CTCCCCATGCACCTCCATGCCCATTTGCACAGCTGCCCAGGTACCCCCAACAGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp ACTGTTGGGGGTACCTGGGCAGCTGTGCAAATGGGCATGGAGGTGCATGGGGAGAGATGGCGCTGCAGGTaGTCCTCCTTGGCGAAGGCC +
Preference number: 4 (lower is better)
Translates to: TVGGTWAAVQMGMEVHGERWRCR*SSLAKA
Trigger: GGCCTTCGCCAAGGAGGACCACCTGCAGCGCCATCT...CTCCCCATGCACCTCCATGCCCATTTGCACAGCTGCCCAGGTACCCCCAACAGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp AAGGAGAGAGAGTGGAGGCCACTGTCTCCACTCTCTGGGACTAAGCCCCAGGTTGGTGGTCGAGGGCGGTaGGTAGTGAGGGGCTGCCAC +
Preference number: 4 (lower is better)
Translates to: KEREWRPLSPLSGTKPQVGGRGR*VVRGCH
Trigger: GTGGCAGCCCCTCACTACCCACCGCCCTCGACCACC...AACCTGGGGCTTAGTCCCAGAGAGTGGAGACAGTGGCCTCCACTCTCTCTCCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp GCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTCCCTTGGAAGGTGTCCAGGTaGCCATTGGAAAGGTCGAGG +
Preference number: 4 (lower is better)
Translates to: ALALTGHGHQMALACPLPWKVSR*PLERSR
Trigger: CCTCGACCTTTCCAATGGCCACCTGGACACCTTCCA...AGGGAGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
3UTR CAA 72 bp CGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTaGTCCGCTCCCTACAAGGCTACCTCAACCCCTCAC +
Preference number: 4 (lower is better)
Translates to: RPYRAWPPDGAS*SAPYKATSTPH
Trigger: GTGAGGGGTTGAGGTAGCCTTGTAGGGAGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR TCA 90 bp GCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTCCCTCCATGCAAGCAGCGATaGCACACGGGATTTCCAGTA +
Preference number: 4 (lower is better)
Translates to: ALALTGHGHQMALACPLPPCKQR*HTGFPV
Trigger: TACTGGAAATCCCGTGTGTCATCGCTGCTTGCATGG...AGGGAGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR TCA 90 bp TTTTATGTGCTCCCCGTTGCTTGGCGTGGTGTCCCAGGCTGTTCCAGCCTGCCCGGCAGTTCTGACCCTTaGGATGGCGCTGCAGGTGGT +
Preference number: 4 (lower is better)
Translates to: FYVLPVAWRGVPGCSSLPGSSDP*DGAAGG
Trigger: ACCACCTGCAGCGCCATCTCAAGGGTCAGAACTGCC...GGGCAGGCTGGAACAGCCTGGGACACCACGCCAAGCAACGGGGAGCACATAAAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp CCCTTACCTCTGGGTCTGCTCCGCAGCTCACTTTTCCCAGGGGCAAGTGAGTTGGCACAGCCCTGTGGGTaGGGTACTCAAGACCCTGCG +
Preference number: 4 (lower is better)
Translates to: PLPLGLLRSSLFPGASELAQPCG*GTQDPA
Trigger: CGCAGGGTCTTGAGTACCGCACCCACAGGGCTGTGC...CAACTCACTTGCCCCTGGGAAAAGTGAGCTGCGGAGCAGACCCAGAGGTAAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp AAGCCCCAGCCTCCTAGAAACCCGCATAGCCGAAGTGGGACCCCACAAATCAGATGCGGCGCCTTCGGGTaGGCACCTCCAGGCAGTTCT +
Preference number: 4 (lower is better)
Translates to: KPQPPRNPHSRSGTPQIRCGAFG*APPGSS
Trigger: AGAACTGCCTGGAGGTGCGCACCCGAAGGCGCCGCA...TCTGATTTGTGGGGTCCCACTTCGGCTATGCGGGTTTCTAGGAGGCTGGGGCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp AAGGAGAGAGAGTGGAGGCCACTGTCTCCACTCTCTGGGACTAAGCCCCAGGTTGTGAGGTCGCACAGATaGCCCAGCTGGCGCTGCTCG +
Preference number: 4 (lower is better)
Translates to: KEREWRPLSPLSGTKPQVVRSHR*PSWRCS
Trigger: CGAGCAGCGCCAGCTGGGCCATCTGTGCGACCTCAC...AACCTGGGGCTTAGTCCCAGAGAGTGGAGACAGTGGCCTCCACTCTCTCTCCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp GGTAGCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTTTGAGGCTGTGGTGGTaGCAGTGGCAAAAGCCTCCA +
Preference number: 4 (lower is better)
Translates to: GSARPYRAWPPDGASLSALRLWW*QWQKPP
Trigger: TGGAGGCTTTTGCCACTGCCACCACCACAGCCTCAA...AGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGCTACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp ACTGTTGGGGGTACCTGGGCAGCTGTGCAAATGGGCATGGAGGTGCATGGGGAGCGCACCAGCTTGTCTTaGCCATCCAGGCCTGGTGTC +
Preference number: 4 (lower is better)
Translates to: TVGGTWAAVQMGMEVHGERTSLS*PSRPGV
Trigger: GACACCAGGCCTGGATGGCCAAGACAAGCTGGTGCG...CTCCCCATGCACCTCCATGCCCATTTGCACAGCTGCCCAGGTACCCCCAACAGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp CCCTTACCTCTGGGTCTGCTCCGCAGCTCACTTTTCCCAGGGGCAAGTGAGTTGATGCAGGAAGCGGGCTaGGCAGTGGGGGCACGAGTA +
Preference number: 4 (lower is better)
Translates to: PLPLGLLRSSLFPGASELMQEAG*AVGARV
Trigger: TACTCGTGCCCCCACTGCCCAGCCCGCTTCCTGCAT...CAACTCACTTGCCCCTGGGAAAAGTGAGCTGCGGAGCAGACCCAGAGGTAAGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp CCCTTACCTCTGGGTCTGCTCCGCAGCTCACTTTTCCCAGGGGCAAGTGAGTTGCAGGGGATGAGGTGGTaGTCGAGGGCGGTGGGTAGT +
Preference number: 4 (lower is better)
Translates to: PLPLGLLRSSLFPGASELQGMRW*SRAVGS
Trigger: ACTACCCACCGCCCTCGACCACCACCTCATCCCCTG...CAACTCACTTGCCCCTGGGAAAAGTGAGCTGCGGAGCAGACCCAGAGGTAAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp AAGGAGAGAGAGTGGAGGCCACTGTCTCCACTCTCTGGGACTAAGCCCCAGGTTCAGCAGGGGATGAGGTaGTGGTCGAGGGCGGTGGGT +
Preference number: 4 (lower is better)
Translates to: KEREWRPLSPLSGTKPQVQQGMR*WSRAVG
Trigger: ACCCACCGCCCTCGACCACCACCTCATCCCCTGCTG...AACCTGGGGCTTAGTCCCAGAGAGTGGAGACAGTGGCCTCCACTCTCTCTCCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp GGTAGCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTTGGAAGGTGTCCAGGTaGCCATTGGAAAGGTCGAGG +
Preference number: 4 (lower is better)
Translates to: GSARPYRAWPPDGASLSAWKVSR*PLERSR
Trigger: CCTCGACCTTTCCAATGGCCACCTGGACACCTTCCA...AGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGCTACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp TTTTATGTGCTCCCCGTTGCTTGGCGTGGTGTCCCAGGCTGTTCCAGCCTGCCCCGAGCCAGAGAGAGGTaGAAGGTGTCCAGGTGGCCA +
Preference number: 4 (lower is better)
Translates to: FYVLPVAWRGVPGCSSLPRARER*KVSRWP
Trigger: TGGCCACCTGGACACCTTCCACCTCTCTCTGGCTCG...GGGCAGGCTGGAACAGCCTGGGACACCACGCCAAGCAACGGGGAGCACATAAAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp ACTGTTGGGGGTACCTGGGCAGCTGTGCAAATGGGCATGGAGGTGCATGGGGAGCGAGCCAGAGAGAGGTaGAAGGTGTCCAGGTGGCCA +
Preference number: 4 (lower is better)
Translates to: TVGGTWAAVQMGMEVHGERARER*KVSRWP
Trigger: TGGCCACCTGGACACCTTCCACCTCTCTCTGGCTCG...CTCCCCATGCACCTCCATGCCCATTTGCACAGCTGCCCAGGTACCCCCAACAGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp AAGGAGAGAGAGTGGAGGCCACTGTCTCCACTCTCTGGGACTAAGCCCCAGGTTCTGGGGGTCCCGTGGTaGCCGACTGCTCCCAGAATC +
Preference number: 4 (lower is better)
Translates to: KEREWRPLSPLSGTKPQVLGVPW*PTAPRI
Trigger: GATTCTGGGAGCAGTCGGCCACCACGGGACCCCCAG...AACCTGGGGCTTAGTCCCAGAGAGTGGAGACAGTGGCCTCCACTCTCTCTCCTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp AAGCCCCAGCCTCCTAGAAACCCGCATAGCCGAAGTGGGACCCCACAAATCAGACTGGGGGTCCCGTGGTaGCCGACTGCTCCCAGAATC +
Preference number: 4 (lower is better)
Translates to: KPQPPRNPHSRSGTPQIRLGVPW*PTAPRI
Trigger: GATTCTGGGAGCAGTCGGCCACCACGGGACCCCCAG...TCTGATTTGTGGGGTCCCACTTCGGCTATGCGGGTTTCTAGGAGGCTGGGGCTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR TCA 90 bp CCCTTACCTCTGGGTCTGCTCCGCAGCTCACTTTTCCCAGGGGCAAGTGAGTTGACCTCCAGGCAGTTCTaGCCCTTGAGATGGCGCTGC +
Preference number: 4 (lower is better)
Translates to: PLPLGLLRSSLFPGASELTSRQF*PLRWRC
Trigger: GCAGCGCCATCTCAAGGGTCAGAACTGCCTGGAGGT...CAACTCACTTGCCCCTGGGAAAAGTGAGCTGCGGAGCAGACCCAGAGGTAAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp CCCTTACCTCTGGGTCTGCTCCGCAGCTCACTTTTCCCAGGGGCAAGTGAGTTGCCGGCATATTGGCGCTaGTGGTGGTCAGTGTGGCTG +
Preference number: 4 (lower is better)
Translates to: PLPLGLLRSSLFPGASELPAYWR*WWSVWL
Trigger: CAGCCACACTGACCACCAGCAGCGCCAATATGCCGG...CAACTCACTTGCCCCTGGGAAAAGTGAGCTGCGGAGCAGACCCAGAGGTAAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp TTTTATGTGCTCCCCGTTGCTTGGCGTGGTGTCCCAGGCTGTTCCAGCCTGCCCTCCCCGGTGTGCAGGTaGATGTGGTTCTTGAGGTCG +
Preference number: 4 (lower is better)
Translates to: FYVLPVAWRGVPGCSSLPSPVCR*MWFLRS
Trigger: CGACCTCAAGAACCACATGCACCTGCACACCGGGGA...GGGCAGGCTGGAACAGCCTGGGACACCACGCCAAGCAACGGGGAGCACATAAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp AAGAGTGCCAGGCAAGGTCTGAGGAAAGGTTCCCTTACCTCTGGGTCTGCTCCGCCCGTGGTGGCCGACTaGTCCCAGAATCGAGCCAGA +
Preference number: 4 (lower is better)
Translates to: KSARQGLRKGSLTSGSAPPVVAD*SQNRAR
Trigger: TCTGGCTCGATTCTGGGAGCAGTCGGCCACCACGGG...CGGAGCAGACCCAGAGGTAAGGGAACCTTTCCTCAGACCTTGCCTGGCACTCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp AAGAGTGCCAGGCAAGGTCTGAGGAAAGGTTCCCTTACCTCTGGGTCTGCTCCGCACAGATGGCCCAGCTaGCGCTGCTCGTTCAGGCAG +
Preference number: 4 (lower is better)
Translates to: KSARQGLRKGSLTSGSAPHRWPS*RCSFRQ
Trigger: CTGCCTGAACGAGCAGCGCCAGCTGGGCCATCTGTG...CGGAGCAGACCCAGAGGTAAGGGAACCTTTCCTCAGACCTTGCCTGGCACTCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp AAGCCCCAGCCTCCTAGAAACCCGCATAGCCGAAGTGGGACCCCACAAATCAGAGCCAGCACAGCCCTGTaGGTGCGGTACTCAAGACCC +
Preference number: 4 (lower is better)
Translates to: KPQPPRNPHSRSGTPQIRASTAL*VRYSRP
Trigger: GGGTCTTGAGTACCGCACCCACAGGGCTGTGCTGGC...TCTGATTTGTGGGGTCCCACTTCGGCTATGCGGGTTTCTAGGAGGCTGGGGCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp GCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTCCCTTGCTGGTGGTCAGTGTaGCTGTGTAAGCAAACTCGA +
Preference number: 4 (lower is better)
Translates to: ALALTGHGHQMALACPLPCWWSV*LCKQTR
Trigger: TCGAGTTTGCTTACACAGCCACACTGACCACCAGCA...AGGGAGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp AAGAGTGCCAGGCAAGGTCTGAGGAAAGGTTCCCTTACCTCTGGGTCTGCTCCGAGATGGCGCTGCAGGTaGTCCTCCTTGGCGAAGGCC +
Preference number: 4 (lower is better)
Translates to: KSARQGLRKGSLTSGSAPRWRCR*SSLAKA
Trigger: GGCCTTCGCCAAGGAGGACCACCTGCAGCGCCATCT...CGGAGCAGACCCAGAGGTAAGGGAACCTTTCCTCAGACCTTGCCTGGCACTCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp AAGAGTGCCAGGCAAGGTCTGAGGAAAGGTTCCCTTACCTCTGGGTCTGCTCCGCAGGGGATGAGGTGGTaGTCGAGGGCGGTGGGTAGT +
Preference number: 4 (lower is better)
Translates to: KSARQGLRKGSLTSGSAPQGMRW*SRAVGS
Trigger: ACTACCCACCGCCCTCGACCACCACCTCATCCCCTG...CGGAGCAGACCCAGAGGTAAGGGAACCTTTCCTCAGACCTTGCCTGGCACTCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp ACTGTTGGGGGTACCTGGGCAGCTGTGCAAATGGGCATGGAGGTGCATGGGGAGCTTCGGCCTGTGGTGTaGTGGGTGTCCCTTCCTCTT +
Preference number: 4 (lower is better)
Translates to: TVGGTWAAVQMGMEVHGELRPVV*WVSLPL
Trigger: AAGAGGAAGGGACACCCACCACACCACAGGCCGAAG...CTCCCCATGCACCTCCATGCCCATTTGCACAGCTGCCCAGGTACCCCCAACAGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR TCA 90 bp AAGGAGAGAGAGTGGAGGCCACTGTCTCCACTCTCTGGGACTAAGCCCCAGGTTGGCAGTTCTGACCCTTaGGATGGCGCTGCAGGTGGT +
Preference number: 4 (lower is better)
Translates to: KEREWRPLSPLSGTKPQVGSSDP*DGAAGG
Trigger: ACCACCTGCAGCGCCATCTCAAGGGTCAGAACTGCC...AACCTGGGGCTTAGTCCCAGAGAGTGGAGACAGTGGCCTCCACTCTCTCTCCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR TCA 90 bp AAGGAGAGAGAGTGGAGGCCACTGTCTCCACTCTCTGGGACTAAGCCCCAGGTTACCTCCAGGCAGTTCTaGCCCTTGAGATGGCGCTGC +
Preference number: 4 (lower is better)
Translates to: KEREWRPLSPLSGTKPQVTSRQF*PLRWRC
Trigger: GCAGCGCCATCTCAAGGGTCAGAACTGCCTGGAGGT...AACCTGGGGCTTAGTCCCAGAGAGTGGAGACAGTGGCCTCCACTCTCTCTCCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp AAGCCCCAGCCTCCTAGAAACCCGCATAGCCGAAGTGGGACCCCACAAATCAGACCGGCATATTGGCGCTaGTGGTGGTCAGTGTGGCTG +
Preference number: 4 (lower is better)
Translates to: KPQPPRNPHSRSGTPQIRPAYWR*WWSVWL
Trigger: CAGCCACACTGACCACCAGCAGCGCCAATATGCCGG...TCTGATTTGTGGGGTCCCACTTCGGCTATGCGGGTTTCTAGGAGGCTGGGGCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp AAGCCCCAGCCTCCTAGAAACCCGCATAGCCGAAGTGGGACCCCACAAATCAGAAAGCTTTCCGGGGTTTaGGGCTGCGACGGGCAACAG +
Preference number: 4 (lower is better)
Translates to: KPQPPRNPHSRSGTPQIRKLSGV*GCDGQQ
Trigger: CTGTTGCCCGTCGCAGCCGCAAACCCCGGAAAGCTT...TCTGATTTGTGGGGTCCCACTTCGGCTATGCGGGTTTCTAGGAGGCTGGGGCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp AAGGAGAGAGAGTGGAGGCCACTGTCTCCACTCTCTGGGACTAAGCCCCAGGTTAAGCTTTCCGGGGTTTaGGGCTGCGACGGGCAACAG +
Preference number: 4 (lower is better)
Translates to: KEREWRPLSPLSGTKPQVKLSGV*GCDGQQ
Trigger: CTGTTGCCCGTCGCAGCCGCAAACCCCGGAAAGCTT...AACCTGGGGCTTAGTCCCAGAGAGTGGAGACAGTGGCCTCCACTCTCTCTCCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp ACTGTTGGGGGTACCTGGGCAGCTGTGCAAATGGGCATGGAGGTGCATGGGGAGGGTGAGTACTGTGGGTaGCTCAGGGACCAGATGGTT +
Preference number: 4 (lower is better)
Translates to: TVGGTWAAVQMGMEVHGEGEYCG*LRDQMV
Trigger: AACCATCTGGTCCCTGAGGCACCCACAGTACTCACC...CTCCCCATGCACCTCCATGCCCATTTGCACAGCTGCCCAGGTACCCCCAACAGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp ACTGTTGGGGGTACCTGGGCAGCTGTGCAAATGGGCATGGAGGTGCATGGGGAGTATCTCCGAGCCCACTaGCCCCACTGTTACCCAATC +
Preference number: 4 (lower is better)
Translates to: TVGGTWAAVQMGMEVHGEYLRAH*PHCYPI
Trigger: GATTGGGTAACAGTGGGGGCAGTGGGCTCGGAGATA...CTCCCCATGCACCTCCATGCCCATTTGCACAGCTGCCCAGGTACCCCCAACAGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp TTTTATGTGCTCCCCGTTGCTTGGCGTGGTGTCCCAGGCTGTTCCAGCCTGCCCCCGAGGCAGTTTGCCTaGCCCGTGGATTATCTTGTG +
Preference number: 4 (lower is better)
Translates to: FYVLPVAWRGVPGCSSLPPRQFA*PVDYLV
Trigger: CACAAGATAATCCACGGGGCAGGCAAACTGCCTCGG...GGGCAGGCTGGAACAGCCTGGGACACCACGCCAAGCAACGGGGAGCACATAAAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp TTTTATGTGCTCCCCGTTGCTTGGCGTGGTGTCCCAGGCTGTTCCAGCCTGCCCTGTGCCGAGGCAGTTTaGCTGCCCCGTGGATTATCT +
Preference number: 4 (lower is better)
Translates to: FYVLPVAWRGVPGCSSLPCAEAV*LPRGLS
Trigger: AGATAATCCACGGGGCAGGCAAACTGCCTCGGCACA...GGGCAGGCTGGAACAGCCTGGGACACCACGCCAAGCAACGGGGAGCACATAAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp TTTTATGTGCTCCCCGTTGCTTGGCGTGGTGTCCCAGGCTGTTCCAGCCTGCCCAGGAGCTCGCTGCTGTaGTCTGGGAATGGGATTCCA +
Preference number: 4 (lower is better)
Translates to: FYVLPVAWRGVPGCSSLPRSSLL*SGNGIP
Trigger: TGGAATCCCATTCCCAGACCACAGCAGCGAGCTCCT...GGGCAGGCTGGAACAGCCTGGGACACCACGCCAAGCAACGGGGAGCACATAAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp TTTTATGTGCTCCCCGTTGCTTGGCGTGGTGTCCCAGGCTGTTCCAGCCTGCCCGCATATTGGCGCTGCTaGTGGTCAGTGTGGCTGTGT +
Preference number: 4 (lower is better)
Translates to: FYVLPVAWRGVPGCSSLPAYWRC*WSVWLC
Trigger: ACACAGCCACACTGACCACCAGCAGCGCCAATATGC...GGGCAGGCTGGAACAGCCTGGGACACCACGCCAAGCAACGGGGAGCACATAAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp CCCTTACCTCTGGGTCTGCTCCGCAGCTCACTTTTCCCAGGGGCAAGTGAGTTGGTACAGCCGGCATATTaGCGCTGCTGGTGGTCAGTG +
Preference number: 4 (lower is better)
Translates to: PLPLGLLRSSLFPGASELVQPAY*RCWWSV
Trigger: CACTGACCACCAGCAGCGCCAATATGCCGGCTGTAC...CAACTCACTTGCCCCTGGGAAAAGTGAGCTGCGGAGCAGACCCAGAGGTAAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp TTTTATGTGCTCCCCGTTGCTTGGCGTGGTGTCCCAGGCTGTTCCAGCCTGCCCTTGAGGCTGTGGTGGTaGCAGTGGCAAAAGCCTCCA +
Preference number: 4 (lower is better)
Translates to: FYVLPVAWRGVPGCSSLPLRLWW*QWQKPP
Trigger: TGGAGGCTTTTGCCACTGCCACCACCACAGCCTCAA...GGGCAGGCTGGAACAGCCTGGGACACCACGCCAAGCAACGGGGAGCACATAAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp ACTGTTGGGGGTACCTGGGCAGCTGTGCAAATGGGCATGGAGGTGCATGGGGAGTTGAGGCTGTGGTGGTaGCAGTGGCAAAAGCCTCCA +
Preference number: 4 (lower is better)
Translates to: TVGGTWAAVQMGMEVHGELRLWW*QWQKPP
Trigger: TGGAGGCTTTTGCCACTGCCACCACCACAGCCTCAA...CTCCCCATGCACCTCCATGCCCATTTGCACAGCTGCCCAGGTACCCCCAACAGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp AAGCCCCAGCCTCCTAGAAACCCGCATAGCCGAAGTGGGACCCCACAAATCAGAGCAGGTGGTCCTCCTTaGCGAAGGCCTTGTGGCACA +
Preference number: 4 (lower is better)
Translates to: KPQPPRNPHSRSGTPQIRAGGPP*RRPCGT
Trigger: TGTGCCACAAGGCCTTCGCCAAGGAGGACCACCTGC...TCTGATTTGTGGGGTCCCACTTCGGCTATGCGGGTTTCTAGGAGGCTGGGGCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp AAGAGTGCCAGGCAAGGTCTGAGGAAAGGTTCCCTTACCTCTGGGTCTGCTCCGGCAGGTGGTCCTCCTTaGCGAAGGCCTTGTGGCACA +
Preference number: 4 (lower is better)
Translates to: KSARQGLRKGSLTSGSAPAGGPP*RRPCGT
Trigger: TGTGCCACAAGGCCTTCGCCAAGGAGGACCACCTGC...CGGAGCAGACCCAGAGGTAAGGGAACCTTTCCTCAGACCTTGCCTGGCACTCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR TCA 90 bp ACTGTTGGGGGTACCTGGGCAGCTGTGCAAATGGGCATGGAGGTGCATGGGGAGCCATGCAAGCAGCGATaGCACACGGGATTTCCAGTA +
Preference number: 4 (lower is better)
Translates to: TVGGTWAAVQMGMEVHGEPCKQR*HTGFPV
Trigger: TACTGGAAATCCCGTGTGTCATCGCTGCTTGCATGG...CTCCCCATGCACCTCCATGCCCATTTGCACAGCTGCCCAGGTACCCCCAACAGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR TCA 90 bp AAGAGTGCCAGGCAAGGTCTGAGGAAAGGTTCCCTTACCTCTGGGTCTGCTCCGAGGTCAAGGGATGGGTaGGTACTGTGGGTGCCTCAG +
Preference number: 4 (lower is better)
Translates to: KSARQGLRKGSLTSGSAPRSRDG*VLWVPQ
Trigger: CTGAGGCACCCACAGTACTCACCCATCCCTTGACCT...CGGAGCAGACCCAGAGGTAAGGGAACCTTTCCTCAGACCTTGCCTGGCACTCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp CCCTTACCTCTGGGTCTGCTCCGCAGCTCACTTTTCCCAGGGGCAAGTGAGTTGGGGCTTCCAGCCCACTaGCTTGTAGAATCTCCATGC +
Preference number: 4 (lower is better)
Translates to: PLPLGLLRSSLFPGASELGLPAH*LVESPC
Trigger: GCATGGAGATTCTACAAGGCAGTGGGCTGGAAGCCC...CAACTCACTTGCCCCTGGGAAAAGTGAGCTGCGGAGCAGACCCAGAGGTAAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp CCCTTACCTCTGGGTCTGCTCCGCAGCTCACTTTTCCCAGGGGCAAGTGAGTTGTGTGCCGAGGCAGTTTaGCTGCCCCGTGGATTATCT +
Preference number: 4 (lower is better)
Translates to: PLPLGLLRSSLFPGASELCAEAV*LPRGLS
Trigger: AGATAATCCACGGGGCAGGCAAACTGCCTCGGCACA...CAACTCACTTGCCCCTGGGAAAAGTGAGCTGCGGAGCAGACCCAGAGGTAAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp AAGCCCCAGCCTCCTAGAAACCCGCATAGCCGAAGTGGGACCCCACAAATCAGATCCCCGGTGTGCAGGTaGATGTGGTTCTTGAGGTCG +
Preference number: 4 (lower is better)
Translates to: KPQPPRNPHSRSGTPQIRSPVCR*MWFLRS
Trigger: CGACCTCAAGAACCACATGCACCTGCACACCGGGGA...TCTGATTTGTGGGGTCCCACTTCGGCTATGCGGGTTTCTAGGAGGCTGGGGCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp AAGAGTGCCAGGCAAGGTCTGAGGAAAGGTTCCCTTACCTCTGGGTCTGCTCCGTCCCCGGTGTGCAGGTaGATGTGGTTCTTGAGGTCG +
Preference number: 4 (lower is better)
Translates to: KSARQGLRKGSLTSGSAPSPVCR*MWFLRS
Trigger: CGACCTCAAGAACCACATGCACCTGCACACCGGGGA...CGGAGCAGACCCAGAGGTAAGGGAACCTTTCCTCAGACCTTGCCTGGCACTCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp CCCTTACCTCTGGGTCTGCTCCGCAGCTCACTTTTCCCAGGGGCAAGTGAGTTGGCATATTGGCGCTGCTaGTGGTCAGTGTGGCTGTGT +
Preference number: 4 (lower is better)
Translates to: PLPLGLLRSSLFPGASELAYWRC*WSVWLC
Trigger: ACACAGCCACACTGACCACCAGCAGCGCCAATATGC...CAACTCACTTGCCCCTGGGAAAAGTGAGCTGCGGAGCAGACCCAGAGGTAAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp AAGGAGAGAGAGTGGAGGCCACTGTCTCCACTCTCTGGGACTAAGCCCCAGGTTGTACAGCCGGCATATTaGCGCTGCTGGTGGTCAGTG +
Preference number: 4 (lower is better)
Translates to: KEREWRPLSPLSGTKPQVVQPAY*RCWWSV
Trigger: CACTGACCACCAGCAGCGCCAATATGCCGGCTGTAC...AACCTGGGGCTTAGTCCCAGAGAGTGGAGACAGTGGCCTCCACTCTCTCTCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp AAGCCCCAGCCTCCTAGAAACCCGCATAGCCGAAGTGGGACCCCACAAATCAGAGTACAGCCGGCATATTaGCGCTGCTGGTGGTCAGTG +
Preference number: 4 (lower is better)
Translates to: KPQPPRNPHSRSGTPQIRVQPAY*RCWWSV
Trigger: CACTGACCACCAGCAGCGCCAATATGCCGGCTGTAC...TCTGATTTGTGGGGTCCCACTTCGGCTATGCGGGTTTCTAGGAGGCTGGGGCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp CCCTTACCTCTGGGTCTGCTCCGCAGCTCACTTTTCCCAGGGGCAAGTGAGTTGTCAGGTCGGGGTCGATaGGATCTTCATCTGAGCCCA +
Preference number: 4 (lower is better)
Translates to: PLPLGLLRSSLFPGASELSGRGR*DLHLSP
Trigger: TGGGCTCAGATGAAGATCCCATCGACCCCGACCTGA...CAACTCACTTGCCCCTGGGAAAAGTGAGCTGCGGAGCAGACCCAGAGGTAAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp AAGCCCCAGCCTCCTAGAAACCCGCATAGCCGAAGTGGGACCCCACAAATCAGACTTCGGCCTGTGGTGTaGTGGGTGTCCCTTCCTCTT +
Preference number: 4 (lower is better)
Translates to: KPQPPRNPHSRSGTPQIRLRPVV*WVSLPL
Trigger: AAGAGGAAGGGACACCCACCACACCACAGGCCGAAG...TCTGATTTGTGGGGTCCCACTTCGGCTATGCGGGTTTCTAGGAGGCTGGGGCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR TCA 90 bp CCACAAATCAGAGATAGATTATTGCTTCAATTCCCCAGTAGTGGCTGGGGACAGGAGGCCAGCAGGGGATaGGGTGGTGGTCGAGGGCGG +
Preference number: 4 (lower is better)
Translates to: PQIRDRLLLQFPSSGWGQEASRG*GGGRGR
Trigger: CCGCCCTCGACCACCACCTCATCCCCTGCTGGCCTC...CTGTCCCCAGCCACTACTGGGGAATTGAAGCAATAATCTATCTCTGATTTGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp AAGGAGAGAGAGTGGAGGCCACTGTCTCCACTCTCTGGGACTAAGCCCCAGGTTGGTGAGTACTGTGGGTaGCTCAGGGACCAGATGGTT +
Preference number: 4 (lower is better)
Translates to: KEREWRPLSPLSGTKPQVGEYCG*LRDQMV
Trigger: AACCATCTGGTCCCTGAGGCACCCACAGTACTCACC...AACCTGGGGCTTAGTCCCAGAGAGTGGAGACAGTGGCCTCCACTCTCTCTCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp AAGAGTGCCAGGCAAGGTCTGAGGAAAGGTTCCCTTACCTCTGGGTCTGCTCCGGGTGAGTACTGTGGGTaGCTCAGGGACCAGATGGTT +
Preference number: 4 (lower is better)
Translates to: KSARQGLRKGSLTSGSAPGEYCG*LRDQMV
Trigger: AACCATCTGGTCCCTGAGGCACCCACAGTACTCACC...CGGAGCAGACCCAGAGGTAAGGGAACCTTTCCTCAGACCTTGCCTGGCACTCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp AAGAGTGCCAGGCAAGGTCTGAGGAAAGGTTCCCTTACCTCTGGGTCTGCTCCGCCGAGGCAGTTTGCCTaGCCCGTGGATTATCTTGTG +
Preference number: 4 (lower is better)
Translates to: KSARQGLRKGSLTSGSAPPRQFA*PVDYLV
Trigger: CACAAGATAATCCACGGGGCAGGCAAACTGCCTCGG...CGGAGCAGACCCAGAGGTAAGGGAACCTTTCCTCAGACCTTGCCTGGCACTCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp ACTGTTGGGGGTACCTGGGCAGCTGTGCAAATGGGCATGGAGGTGCATGGGGAGTGCTGGTGGTCAGTGTaGCTGTGTAAGCAAACTCGA +
Preference number: 4 (lower is better)
Translates to: TVGGTWAAVQMGMEVHGECWWSV*LCKQTR
Trigger: TCGAGTTTGCTTACACAGCCACACTGACCACCAGCA...CTCCCCATGCACCTCCATGCCCATTTGCACAGCTGCCCAGGTACCCCCAACAGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp CCCTTACCTCTGGGTCTGCTCCGCAGCTCACTTTTCCCAGGGGCAAGTGAGTTGAGTAGCCGAGCAGCTTaGAGTACAGCCGGCATATTG +
Preference number: 4 (lower is better)
Translates to: PLPLGLLRSSLFPGASELSSRAA*STAGIL
Trigger: CAATATGCCGGCTGTACTCCAAGCTGCTCGGCTACT...CAACTCACTTGCCCCTGGGAAAAGTGAGCTGCGGAGCAGACCCAGAGGTAAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp AAGAGTGCCAGGCAAGGTCTGAGGAAAGGTTCCCTTACCTCTGGGTCTGCTCCGCTGTGGTGGTGGCAGTaGCAAAAGCCTCCAGGTACT +
Preference number: 4 (lower is better)
Translates to: KSARQGLRKGSLTSGSAPLWWWQ*QKPPGT
Trigger: AGTACCTGGAGGCTTTTGCCACTGCCACCACCACAG...CGGAGCAGACCCAGAGGTAAGGGAACCTTTCCTCAGACCTTGCCTGGCACTCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp AAGCCCCAGCCTCCTAGAAACCCGCATAGCCGAAGTGGGACCCCACAAATCAGACTGTGGTGGTGGCAGTaGCAAAAGCCTCCAGGTACT +
Preference number: 4 (lower is better)
Translates to: KPQPPRNPHSRSGTPQIRLWWWQ*QKPPGT
Trigger: AGTACCTGGAGGCTTTTGCCACTGCCACCACCACAG...TCTGATTTGTGGGGTCCCACTTCGGCTATGCGGGTTTCTAGGAGGCTGGGGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp AAGAGTGCCAGGCAAGGTCTGAGGAAAGGTTCCCTTACCTCTGGGTCTGCTCCGTTGAGGCTGTGGTGGTaGCAGTGGCAAAAGCCTCCA +
Preference number: 4 (lower is better)
Translates to: KSARQGLRKGSLTSGSAPLRLWW*QWQKPP
Trigger: TGGAGGCTTTTGCCACTGCCACCACCACAGCCTCAA...CGGAGCAGACCCAGAGGTAAGGGAACCTTTCCTCAGACCTTGCCTGGCACTCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp AAGAGTGCCAGGCAAGGTCTGAGGAAAGGTTCCCTTACCTCTGGGTCTGCTCCGTCAGGTCGGGGTCGATaGGATCTTCATCTGAGCCCA +
Preference number: 4 (lower is better)
Translates to: KSARQGLRKGSLTSGSAPSGRGR*DLHLSP
Trigger: TGGGCTCAGATGAAGATCCCATCGACCCCGACCTGA...CGGAGCAGACCCAGAGGTAAGGGAACCTTTCCTCAGACCTTGCCTGGCACTCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp ACTGTTGGGGGTACCTGGGCAGCTGTGCAAATGGGCATGGAGGTGCATGGGGAGTATCTTGTGACAGACTaGGCACTCTTGGGGCATCTG +
Preference number: 4 (lower is better)
Translates to: TVGGTWAAVQMGMEVHGEYLVTD*ALLGHL
Trigger: CAGATGCCCCAAGAGTGCCCAGTCTGTCACAAGATA...CTCCCCATGCACCTCCATGCCCATTTGCACAGCTGCCCAGGTACCCCCAACAGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp TTTTATGTGCTCCCCGTTGCTTGGCGTGGTGTCCCAGGCTGTTCCAGCCTGCCCTATCTTGTGACAGACTaGGCACTCTTGGGGCATCTG +
Preference number: 4 (lower is better)
Translates to: FYVLPVAWRGVPGCSSLPYLVTD*ALLGHL
Trigger: CAGATGCCCCAAGAGTGCCCAGTCTGTCACAAGATA...GGGCAGGCTGGAACAGCCTGGGACACCACGCCAAGCAACGGGGAGCACATAAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp AAGGAGAGAGAGTGGAGGCCACTGTCTCCACTCTCTGGGACTAAGCCCCAGGTTTGGAAGGTGTCCAGGTaGCCATTGGAAAGGTCGAGG +
Preference number: 4 (lower is better)
Translates to: KEREWRPLSPLSGTKPQVWKVSR*PLERSR
Trigger: CCTCGACCTTTCCAATGGCCACCTGGACACCTTCCA...AACCTGGGGCTTAGTCCCAGAGAGTGGAGACAGTGGCCTCCACTCTCTCTCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp AAGCCCCAGCCTCCTAGAAACCCGCATAGCCGAAGTGGGACCCCACAAATCAGATATTGGCGCTGCTGGTaGTCAGTGTGGCTGTGTAAG +
Preference number: 4 (lower is better)
Translates to: KPQPPRNPHSRSGTPQIRYWRCW*SVWLCK
Trigger: CTTACACAGCCACACTGACCACCAGCAGCGCCAATA...TCTGATTTGTGGGGTCCCACTTCGGCTATGCGGGTTTCTAGGAGGCTGGGGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp AAGGAGAGAGAGTGGAGGCCACTGTCTCCACTCTCTGGGACTAAGCCCCAGGTTTATTGGCGCTGCTGGTaGTCAGTGTGGCTGTGTAAG +
Preference number: 4 (lower is better)
Translates to: KEREWRPLSPLSGTKPQVYWRCW*SVWLCK
Trigger: CTTACACAGCCACACTGACCACCAGCAGCGCCAATA...AACCTGGGGCTTAGTCCCAGAGAGTGGAGACAGTGGCCTCCACTCTCTCTCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp AAGGAGAGAGAGTGGAGGCCACTGTCTCCACTCTCTGGGACTAAGCCCCAGGTTAGTAGCCGAGCAGCTTaGAGTACAGCCGGCATATTG +
Preference number: 4 (lower is better)
Translates to: KEREWRPLSPLSGTKPQVSSRAA*STAGIL
Trigger: CAATATGCCGGCTGTACTCCAAGCTGCTCGGCTACT...AACCTGGGGCTTAGTCCCAGAGAGTGGAGACAGTGGCCTCCACTCTCTCTCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp AAGAGTGCCAGGCAAGGTCTGAGGAAAGGTTCCCTTACCTCTGGGTCTGCTCCGAGTAGCCGAGCAGCTTaGAGTACAGCCGGCATATTG +
Preference number: 4 (lower is better)
Translates to: KSARQGLRKGSLTSGSAPSSRAA*STAGIL
Trigger: CAATATGCCGGCTGTACTCCAAGCTGCTCGGCTACT...CGGAGCAGACCCAGAGGTAAGGGAACCTTTCCTCAGACCTTGCCTGGCACTCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp AAGCCCCAGCCTCCTAGAAACCCGCATAGCCGAAGTGGGACCCCACAAATCAGAGCTGTGGTCTGGGAATaGGATTCCAATCAGGTCATC +
Preference number: 4 (lower is better)
Translates to: KPQPPRNPHSRSGTPQIRAVVWE*DSNQVI
Trigger: GATGACCTGATTGGAATCCCATTCCCAGACCACAGC...TCTGATTTGTGGGGTCCCACTTCGGCTATGCGGGTTTCTAGGAGGCTGGGGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp AAGGAGAGAGAGTGGAGGCCACTGTCTCCACTCTCTGGGACTAAGCCCCAGGTTGCTGTGGTCTGGGAATaGGATTCCAATCAGGTCATC +
Preference number: 4 (lower is better)
Translates to: KEREWRPLSPLSGTKPQVAVVWE*DSNQVI
Trigger: GATGACCTGATTGGAATCCCATTCCCAGACCACAGC...AACCTGGGGCTTAGTCCCAGAGAGTGGAGACAGTGGCCTCCACTCTCTCTCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp AAGCCCCAGCCTCCTAGAAACCCGCATAGCCGAAGTGGGACCCCACAAATCAGATATCTTGTGACAGACTaGGCACTCTTGGGGCATCTG +
Preference number: 4 (lower is better)
Translates to: KPQPPRNPHSRSGTPQIRYLVTD*ALLGHL
Trigger: CAGATGCCCCAAGAGTGCCCAGTCTGTCACAAGATA...TCTGATTTGTGGGGTCCCACTTCGGCTATGCGGGTTTCTAGGAGGCTGGGGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp CCACAAATCAGAGATAGATTATTGCTTCAATTCCCCAGTAGTGGCTGGGGACAGCAGCAGGGGATGAGGTaGTGGTCGAGGGCGGTGGGT +
Preference number: 4 (lower is better)
Translates to: PQIRDRLLLQFPSSGWGQQQGMR*WSRAVG
Trigger: ACCCACCGCCCTCGACCACCACCTCATCCCCTGCTG...CTGTCCCCAGCCACTACTGGGGAATTGAAGCAATAATCTATCTCTGATTTGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp CCACAAATCAGAGATAGATTATTGCTTCAATTCCCCAGTAGTGGCTGGGGACAGCTGGGGGTCCCGTGGTaGCCGACTGCTCCCAGAATC +
Preference number: 4 (lower is better)
Translates to: PQIRDRLLLQFPSSGWGQLGVPW*PTAPRI
Trigger: GATTCTGGGAGCAGTCGGCCACCACGGGACCCCCAG...CTGTCCCCAGCCACTACTGGGGAATTGAAGCAATAATCTATCTCTGATTTGTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp CCACAAATCAGAGATAGATTATTGCTTCAATTCCCCAGTAGTGGCTGGGGACAGCCCTTGAGATGGCGCTaGAGGTGGTCCTCCTTGGCG +
Preference number: 4 (lower is better)
Translates to: PQIRDRLLLQFPSSGWGQPLRWR*RWSSLA
Trigger: CGCCAAGGAGGACCACCTGCAGCGCCATCTCAAGGG...CTGTCCCCAGCCACTACTGGGGAATTGAAGCAATAATCTATCTCTGATTTGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp CCACAAATCAGAGATAGATTATTGCTTCAATTCCCCAGTAGTGGCTGGGGACAGCACAGATGGCCCAGCTaGCGCTGCTCGTTCAGGCAG +
Preference number: 4 (lower is better)
Translates to: PQIRDRLLLQFPSSGWGQHRWPS*RCSFRQ
Trigger: CTGCCTGAACGAGCAGCGCCAGCTGGGCCATCTGTG...CTGTCCCCAGCCACTACTGGGGAATTGAAGCAATAATCTATCTCTGATTTGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp CCACAAATCAGAGATAGATTATTGCTTCAATTCCCCAGTAGTGGCTGGGGACAGAGATGGCGCTGCAGGTaGTCCTCCTTGGCGAAGGCC +
Preference number: 4 (lower is better)
Translates to: PQIRDRLLLQFPSSGWGQRWRCR*SSLAKA
Trigger: GGCCTTCGCCAAGGAGGACCACCTGCAGCGCCATCT...CTGTCCCCAGCCACTACTGGGGAATTGAAGCAATAATCTATCTCTGATTTGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR TCA 90 bp CCACAAATCAGAGATAGATTATTGCTTCAATTCCCCAGTAGTGGCTGGGGACAGACCTCCAGGCAGTTCTaGCCCTTGAGATGGCGCTGC +
Preference number: 4 (lower is better)
Translates to: PQIRDRLLLQFPSSGWGQTSRQF*PLRWRC
Trigger: GCAGCGCCATCTCAAGGGTCAGAACTGCCTGGAGGT...CTGTCCCCAGCCACTACTGGGGAATTGAAGCAATAATCTATCTCTGATTTGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp CCACAAATCAGAGATAGATTATTGCTTCAATTCCCCAGTAGTGGCTGGGGACAGCGCACCAGCTTGTCTTaGCCATCCAGGCCTGGTGTC +
Preference number: 4 (lower is better)
Translates to: PQIRDRLLLQFPSSGWGQRTSLS*PSRPGV
Trigger: GACACCAGGCCTGGATGGCCAAGACAAGCTGGTGCG...CTGTCCCCAGCCACTACTGGGGAATTGAAGCAATAATCTATCTCTGATTTGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp CCACAAATCAGAGATAGATTATTGCTTCAATTCCCCAGTAGTGGCTGGGGACAGGCAGGTGGTCCTCCTTaGCGAAGGCCTTGTGGCACA +
Preference number: 4 (lower is better)
Translates to: PQIRDRLLLQFPSSGWGQAGGPP*RRPCGT
Trigger: TGTGCCACAAGGCCTTCGCCAAGGAGGACCACCTGC...CTGTCCCCAGCCACTACTGGGGAATTGAAGCAATAATCTATCTCTGATTTGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp CCACAAATCAGAGATAGATTATTGCTTCAATTCCCCAGTAGTGGCTGGGGACAGCGGTACTCAAGACCCTaGGTCCTGATGGTGAGGTCG +
Preference number: 4 (lower is better)
Translates to: PQIRDRLLLQFPSSGWGQRYSRP*VLMVRS
Trigger: CGACCTCACCATCAGGACGCAGGGTCTTGAGTACCG...CTGTCCCCAGCCACTACTGGGGAATTGAAGCAATAATCTATCTCTGATTTGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp CCACAAATCAGAGATAGATTATTGCTTCAATTCCCCAGTAGTGGCTGGGGACAGGGTGAGTACTGTGGGTaGCTCAGGGACCAGATGGTT +
Preference number: 4 (lower is better)
Translates to: PQIRDRLLLQFPSSGWGQGEYCG*LRDQMV
Trigger: AACCATCTGGTCCCTGAGGCACCCACAGTACTCACC...CTGTCCCCAGCCACTACTGGGGAATTGAAGCAATAATCTATCTCTGATTTGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp CCACAAATCAGAGATAGATTATTGCTTCAATTCCCCAGTAGTGGCTGGGGACAGCCGAGGCAGTTTGCCTaGCCCGTGGATTATCTTGTG +
Preference number: 4 (lower is better)
Translates to: PQIRDRLLLQFPSSGWGQPRQFA*PVDYLV
Trigger: CACAAGATAATCCACGGGGCAGGCAAACTGCCTCGG...CTGTCCCCAGCCACTACTGGGGAATTGAAGCAATAATCTATCTCTGATTTGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR GCA 90 bp CCACAAATCAGAGATAGATTATTGCTTCAATTCCCCAGTAGTGGCTGGGGACAGTGTGCCGAGGCAGTTTaGCTGCCCCGTGGATTATCT +
Preference number: 4 (lower is better)
Translates to: PQIRDRLLLQFPSSGWGQCAEAV*LPRGLS
Trigger: AGATAATCCACGGGGCAGGCAAACTGCCTCGGCACA...CTGTCCCCAGCCACTACTGGGGAATTGAAGCAATAATCTATCTCTGATTTGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp CCACAAATCAGAGATAGATTATTGCTTCAATTCCCCAGTAGTGGCTGGGGACAGGCATATTGGCGCTGCTaGTGGTCAGTGTGGCTGTGT +
Preference number: 4 (lower is better)
Translates to: PQIRDRLLLQFPSSGWGQAYWRC*WSVWLC
Trigger: ACACAGCCACACTGACCACCAGCAGCGCCAATATGC...CTGTCCCCAGCCACTACTGGGGAATTGAAGCAATAATCTATCTCTGATTTGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CCA 90 bp CCACAAATCAGAGATAGATTATTGCTTCAATTCCCCAGTAGTGGCTGGGGACAGTGCTGGTGGTCAGTGTaGCTGTGTAAGCAAACTCGA +
Preference number: 4 (lower is better)
Translates to: PQIRDRLLLQFPSSGWGQCWWSV*LCKQTR
Trigger: TCGAGTTTGCTTACACAGCCACACTGACCACCAGCA...CTGTCCCCAGCCACTACTGGGGAATTGAAGCAATAATCTATCTCTGATTTGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CAA 90 bp GGCCCCAGGGAGGGAGCGCCAGGAACAAGACATTCCCTGCCCCGGGACGCGGGACTCCTCAGGGGGCCCTaGTGTAGTGACTGGGGGTCC +
Preference number: 5 (lower is better)
Translates to: GPREGAPGTRHSLPRDAGLLRGP*CSDWGS
Trigger: GGACCCCCAGTCACTACACAAGGGCCCCCTGAGGAG...TCCCGCGTCCCGGGGCAGGGAATGTCTTGTTCCTGGCGCTCCCTCCCTGGGGCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS TCA 90 bp CCTTGCGGCGCCTTCGGGTGCGCACCTCCAGGCAGTTCTGACCCTTaGGATGGCGCTGCAGGTGGTCCTCCTTGGCGAAGGCCTTGTGGC +
Preference number: 5 (lower is better)
Translates to: PCGAFGCAPPGSSDP*DGAAGGPPWRRPCG
Trigger: GCCACAAGGCCTTCGCCAAGGAGGACCACCTGCAGCGCCATCTCAAGGGTCAGAACTGCCTGGAGGTGCGCACCCGAAGGCGCCGCAAGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CAA 90 bp GGCCCCAGGGAGGGAGCGCCAGGAACAAGACATTCCCTGCCCCGGGACGCGGGACGTTTACGCACCAGCTaGTCTTGGCCATCCAGGCCT +
Preference number: 5 (lower is better)
Translates to: GPREGAPGTRHSLPRDAGRLRTS*SWPSRP
Trigger: AGGCCTGGATGGCCAAGACAAGCTGGTGCGTAAACG...TCCCGCGTCCCGGGGCAGGGAATGTCTTGTTCCTGGCGCTCCCTCCCTGGGGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CAA 90 bp CCAGGGGCGGGCGAGCCAATCAGGCCACCCTGCCCTCCTCTTCTCCAGGACCCCCGTTTACGCACCAGCTaGTCTTGGCCATCCAGGCCT +
Preference number: 5 (lower is better)
Translates to: PGAGEPIRPPCPPLLQDPRLRTS*SWPSRP
Trigger: AGGCCTGGATGGCCAAGACAAGCTGGTGCGTAAACG...GGGGTCCTGGAGAAGAGGAGGGCAGGGTGGCCTGATTGGCTCGCCCGCCCCTGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS TCA 90 bp GAAGGTGTCCAGGTGGCCATTGGAAAGGTCGAGGCCAGCAGGGGATaGGGTGGTGGTCGAGGGCGGTGGGTAGTGAGGGGCTGCCACGTC +
Preference number: 5 (lower is better)
Translates to: EGVQVAIGKVEASRG*GGGRGRWVVRGCHV
Trigger: GACGTGGCAGCCCCTCACTACCCACCGCCCTCGACCACCACCTCATCCCCTGCTGGCCTCGACCTTTCCAATGGCCACCTGGACACCTTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS CCA 90 bp CCAGGTGGCCATTGGAAAGGTCGAGGCCAGCAGGGGATGAGGTGGTaGTCGAGGGCGGTGGGTAGTGAGGGGCTGCCACGTCATCCTTGC +
Preference number: 5 (lower is better)
Translates to: PGGHWKGRGQQGMRW*SRAVGSEGLPRHPC
Trigger: GCAAGGATGACGTGGCAGCCCCTCACTACCCACCGCCCTCGACCACCACCTCATCCCCTGCTGGCCTCGACCTTTCCAATGGCCACCTGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CAA 90 bp GGCCCCAGGGAGGGAGCGCCAGGAACAAGACATTCCCTGCCCCGGGACGCGGGATCGGGCCCCTTTGGTTaGAAGAAAAGCTTTCCGGGG +
Preference number: 5 (lower is better)
Translates to: GPREGAPGTRHSLPRDAGSGPFG*KKSFPG
Trigger: CCCCGGAAAGCTTTTCTTCAAACCAAAGGGGCCCGA...TCCCGCGTCCCGGGGCAGGGAATGTCTTGTTCCTGGCGCTCCCTCCCTGGGGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CAA 90 bp GGTAGCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTCTCCTCAGGGGGCCCTaGTGTAGTGACTGGGGGTCC +
Preference number: 5 (lower is better)
Translates to: GSARPYRAWPPDGASLSALLRGP*CSDWGS
Trigger: GGACCCCCAGTCACTACACAAGGGCCCCCTGAGGAG...AGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGCTACC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS GCA 90 bp TCAGGGGGCCCTTGTGTAGTGACTGGGGGTCCCGTGGTGGCCGACTaGTCCCAGAATCGAGCCAGAGAGAGGTGGAAGGTGTCCAGGTGG +
Preference number: 5 (lower is better)
Translates to: SGGPCVVTGGPVVAD*SQNRARERWKVSRW
Trigger: CCACCTGGACACCTTCCACCTCTCTCTGGCTCGATTCTGGGAGCAGTCGGCCACCACGGGACCCCCAGTCACTACACAAGGGCCCCCTGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS CCA 90 bp TGTCCAGGTGGCCATTGGAAAGGTCGAGGCCAGCAGGGGATGAGGTaGTGGTCGAGGGCGGTGGGTAGTGAGGGGCTGCCACGTCATCCT +
Preference number: 5 (lower is better)
Translates to: CPGGHWKGRGQQGMR*WSRAVGSEGLPRHP
Trigger: AGGATGACGTGGCAGCCCCTCACTACCCACCGCCCTCGACCACCACCTCATCCCCTGCTGGCCTCGACCTTTCCAATGGCCACCTGGACA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS CCA 90 bp GGTCCCGTGGTGGCCGACTGCTCCCAGAATCGAGCCAGAGAGAGGTaGAAGGTGTCCAGGTGGCCATTGGAAAGGTCGAGGCCAGCAGGG +
Preference number: 5 (lower is better)
Translates to: GPVVADCSQNRARER*KVSRWPLERSRPAG
Trigger: CCCTGCTGGCCTCGACCTTTCCAATGGCCACCTGGACACCTTCCACCTCTCTCTGGCTCGATTCTGGGAGCAGTCGGCCACCACGGGACC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CAA 90 bp GCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTCCCTACGCACCAGCTTGTCTaGGCCATCCAGGCCTGGTGT +
Preference number: 5 (lower is better)
Translates to: ALALTGHGHQMALACPLPTHQLV*AIQAWC
Trigger: ACACCAGGCCTGGATGGCCAAGACAAGCTGGTGCGT...AGGGAGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CAA 90 bp GCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTCCCTTCCTTGGCGAAGGCCTaGTGGCACAGGTGGCACTCA +
Preference number: 5 (lower is better)
Translates to: ALALTGHGHQMALACPLPSLAKA*WHRWHS
Trigger: TGAGTGCCACCTGTGCCACAAGGCCTTCGCCAAGGA...AGGGAGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CAA 90 bp GGTAGCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTTGCAGGTGGTCCTCCTaGGCGAAGGCCTTGTGGCAC +
Preference number: 5 (lower is better)
Translates to: GSARPYRAWPPDGASLSACRWSS*AKALWH
Trigger: GTGCCACAAGGCCTTCGCCAAGGAGGACCACCTGCA...AGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGCTACC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS CCA 90 bp TGTCCCTTCCTCTTCCTCCTCCTCAGGGGGCCCTTGTGTAGTGACTaGGGGTCCCGTGGTGGCCGACTGCTCCCAGAATCGAGCCAGAGA +
Preference number: 5 (lower is better)
Translates to: CPFLFLLLRGPLCSD*GSRGGRLLPESSQR
Trigger: TCTCTGGCTCGATTCTGGGAGCAGTCGGCCACCACGGGACCCCCAGTCACTACACAAGGGCCCCCTGAGGAGGAGGAAGAGGAAGGGACA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CAA 90 bp GGTAGCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTAAAGCTTTCCGGGGTTaGCGGCTGCGACGGGCAACA +
Preference number: 5 (lower is better)
Translates to: GSARPYRAWPPDGASLSAKAFRG*RLRRAT
Trigger: TGTTGCCCGTCGCAGCCGCAAACCCCGGAAAGCTTT...AGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGCTACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CAA 90 bp GGTAGCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTACGCACCAGCTTGTCTaGGCCATCCAGGCCTGGTGT +
Preference number: 5 (lower is better)
Translates to: GSARPYRAWPPDGASLSATHQLV*AIQAWC
Trigger: ACACCAGGCCTGGATGGCCAAGACAAGCTGGTGCGT...AGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGCTACC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CAA 90 bp CCAGGGGCGGGCGAGCCAATCAGGCCACCCTGCCCTCCTCTTCTCCAGGACCCCATGTGGATCTTCAGCTaGTCATTCCTGGTGAAGCGG +
Preference number: 5 (lower is better)
Translates to: PGAGEPIRPPCPPLLQDPMWIFS*SFLVKR
Trigger: CCGCTTCACCAGGAATGACAAGCTGAAGATCCACAT...GGGGTCCTGGAGAAGAGGAGGGCAGGGTGGCCTGATTGGCTCGCCCGCCCCTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CAA 90 bp GGTAGCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTGTGTCCAGGTGGCCATaGGAAAGGTCGAGGCCAGCA +
Preference number: 5 (lower is better)
Translates to: GSARPYRAWPPDGASLSAVSRWP*ERSRPA
Trigger: TGCTGGCCTCGACCTTTCCAATGGCCACCTGGACAC...AGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGCTACC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CAA 90 bp GGTAGCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTAGTACAGCCGGCATATaGGCGCTGCTGGTGGTCAGT +
Preference number: 5 (lower is better)
Translates to: GSARPYRAWPPDGASLSASTAGI*ALLVVS
Trigger: ACTGACCACCAGCAGCGCCAATATGCCGGCTGTACT...AGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGCTACC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CAA 90 bp GCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTCCCTTCGGGCCCCTTTGGTTaGAAGAAAAGCTTTCCGGGG +
Preference number: 5 (lower is better)
Translates to: ALALTGHGHQMALACPLPSGPFG*KKSFPG
Trigger: CCCCGGAAAGCTTTTCTTCAAACCAAAGGGGCCCGA...AGGGAGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CAA 90 bp TTTTATGTGCTCCCCGTTGCTTGGCGTGGTGTCCCAGGCTGTTCCAGCCTGCCCTGCAGGTGGTCCTCCTaGGCGAAGGCCTTGTGGCAC +
Preference number: 5 (lower is better)
Translates to: FYVLPVAWRGVPGCSSLPCRWSS*AKALWH
Trigger: GTGCCACAAGGCCTTCGCCAAGGAGGACCACCTGCA...GGGCAGGCTGGAACAGCCTGGGACACCACGCCAAGCAACGGGGAGCACATAAAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS CCA 90 bp CAGCTTGGAGTACAGCCGGCATATTGGCGCTGCTGGTGGTCAGTGTaGCTGTGTAAGCAAACTCGAGCAGGGCACCTAGGGCCTCTGGCC +
Preference number: 5 (lower is better)
Translates to: QLGVQPAYWRCWWSV*LCKQTRAGHLGPLA
Trigger: GGCCAGAGGCCCTAGGTGCCCTGCTCGAGTTTGCTTACACAGCCACACTGACCACCAGCAGCGCCAATATGCCGGCTGTACTCCAAGCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS CCA 90 bp CCTCCAGGTACTGTCGGGCTCGCTCACAGTCATCCTCATCGGGGCTaGGGGCTTCCAGCCCACTGCCTTGTAGAATCTCCATGCAAGCAG +
Preference number: 5 (lower is better)
Translates to: PPGTVGLAHSHPHRG*GLPAHCLVESPCKQ
Trigger: CTGCTTGCATGGAGATTCTACAAGGCAGTGGGCTGGAAGCCCCCAGCCCCGATGAGGATGACTGTGAGCGAGCCCGACAGTACCTGGAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS CCA 90 bp GTGGAGGGCTGTCTTCACCGTTGGGCATTCCTGAGGTTGAGGCTGTaGTGGTGGCAGTGGCAAAAGCCTCCAGGTACTGTCGGGCTCGCT +
Preference number: 5 (lower is better)
Translates to: VEGCLHRWAFLRLRL*WWQWQKPPGTVGLA
Trigger: AGCGAGCCCGACAGTACCTGGAGGCTTTTGCCACTGCCACCACCACAGCCTCAACCTCAGGAATGCCCAACGGTGAAGACAGCCCTCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CAA 90 bp GGTAGCGCTCGCCCTTACAGGGCATGGCCACCAGATGGCGCTAGCTTGTCCGCTTCGGGCCCCTTTGGTTaGAAGAAAAGCTTTCCGGGG +
Preference number: 5 (lower is better)
Translates to: GSARPYRAWPPDGASLSASGPFG*KKSFPG
Trigger: CCCCGGAAAGCTTTTCTTCAAACCAAAGGGGCCCGA...AGCGGACAAGCTAGCGCCATCTGGTGGCCATGCCCTGTAAGGGCGAGCGCTACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CAA 90 bp AAGGAGAGAGAGTGGAGGCCACTGTCTCCACTCTCTGGGACTAAGCCCCAGGTTCTCCTCAGGGGGCCCTaGTGTAGTGACTGGGGGTCC +
Preference number: 5 (lower is better)
Translates to: KEREWRPLSPLSGTKPQVLLRGP*CSDWGS
Trigger: GGACCCCCAGTCACTACACAAGGGCCCCCTGAGGAG...AACCTGGGGCTTAGTCCCAGAGAGTGGAGACAGTGGCCTCCACTCTCTCTCCTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS CCA 90 bp GTAGCCGAGCAGCTTGGAGTACAGCCGGCATATTGGCGCTGCTGGTaGTCAGTGTGGCTGTGTAAGCAAACTCGAGCAGGGCACCTAGGG +
Preference number: 5 (lower is better)
Translates to: VAEQLGVQPAYWRCW*SVWLCKQTRAGHLG
Trigger: CCCTAGGTGCCCTGCTCGAGTTTGCTTACACAGCCACACTGACCACCAGCAGCGCCAATATGCCGGCTGTACTCCAAGCTGCTCGGCTAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS CCA 90 bp GGCTGTCTTCACCGTTGGGCATTCCTGAGGTTGAGGCTGTGGTGGTaGCAGTGGCAAAAGCCTCCAGGTACTGTCGGGCTCGCTCACAGT +
Preference number: 5 (lower is better)
Translates to: GCLHRWAFLRLRLWW*QWQKPPGTVGLAHS
Trigger: ACTGTGAGCGAGCCCGACAGTACCTGGAGGCTTTTGCCACTGCCACCACCACAGCCTCAACCTCAGGAATGCCCAACGGTGAAGACAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CAA 90 bp AAGAGTGCCAGGCAAGGTCTGAGGAAAGGTTCCCTTACCTCTGGGTCTGCTCCGTGCAGGTGGTCCTCCTaGGCGAAGGCCTTGTGGCAC +
Preference number: 5 (lower is better)
Translates to: KSARQGLRKGSLTSGSAPCRWSS*AKALWH
Trigger: GTGCCACAAGGCCTTCGCCAAGGAGGACCACCTGCA...CGGAGCAGACCCAGAGGTAAGGGAACCTTTCCTCAGACCTTGCCTGGCACTCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CAA 90 bp AAGGAGAGAGAGTGGAGGCCACTGTCTCCACTCTCTGGGACTAAGCCCCAGGTTTGCAGGTGGTCCTCCTaGGCGAAGGCCTTGTGGCAC +
Preference number: 5 (lower is better)
Translates to: KEREWRPLSPLSGTKPQVCRWSS*AKALWH
Trigger: GTGCCACAAGGCCTTCGCCAAGGAGGACCACCTGCA...AACCTGGGGCTTAGTCCCAGAGAGTGGAGACAGTGGCCTCCACTCTCTCTCCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS CCA 90 bp CCAGTAGCCGAGCAGCTTGGAGTACAGCCGGCATATTGGCGCTGCTaGTGGTCAGTGTGGCTGTGTAAGCAAACTCGAGCAGGGCACCTA +
Preference number: 5 (lower is better)
Translates to: PVAEQLGVQPAYWRC*WSVWLCKQTRAGHL
Trigger: TAGGTGCCCTGCTCGAGTTTGCTTACACAGCCACACTGACCACCAGCAGCGCCAATATGCCGGCTGTACTCCAAGCTGCTCGGCTACTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CAA 90 bp AAGGAGAGAGAGTGGAGGCCACTGTCTCCACTCTCTGGGACTAAGCCCCAGGTTACGCACCAGCTTGTCTaGGCCATCCAGGCCTGGTGT +
Preference number: 5 (lower is better)
Translates to: KEREWRPLSPLSGTKPQVTHQLV*AIQAWC
Trigger: ACACCAGGCCTGGATGGCCAAGACAAGCTGGTGCGT...AACCTGGGGCTTAGTCCCAGAGAGTGGAGACAGTGGCCTCCACTCTCTCTCCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CAA 90 bp AAGAGTGCCAGGCAAGGTCTGAGGAAAGGTTCCCTTACCTCTGGGTCTGCTCCGACGCACCAGCTTGTCTaGGCCATCCAGGCCTGGTGT +
Preference number: 5 (lower is better)
Translates to: KSARQGLRKGSLTSGSAPTHQLV*AIQAWC
Trigger: ACACCAGGCCTGGATGGCCAAGACAAGCTGGTGCGT...CGGAGCAGACCCAGAGGTAAGGGAACCTTTCCTCAGACCTTGCCTGGCACTCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CAA 90 bp AAGGAGAGAGAGTGGAGGCCACTGTCTCCACTCTCTGGGACTAAGCCCCAGGTTTCCTTGGCGAAGGCCTaGTGGCACAGGTGGCACTCA +
Preference number: 5 (lower is better)
Translates to: KEREWRPLSPLSGTKPQVSLAKA*WHRWHS
Trigger: TGAGTGCCACCTGTGCCACAAGGCCTTCGCCAAGGA...AACCTGGGGCTTAGTCCCAGAGAGTGGAGACAGTGGCCTCCACTCTCTCTCCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CAA 90 bp AAGAGTGCCAGGCAAGGTCTGAGGAAAGGTTCCCTTACCTCTGGGTCTGCTCCGTCCTTGGCGAAGGCCTaGTGGCACAGGTGGCACTCA +
Preference number: 5 (lower is better)
Translates to: KSARQGLRKGSLTSGSAPSLAKA*WHRWHS
Trigger: TGAGTGCCACCTGTGCCACAAGGCCTTCGCCAAGGA...CGGAGCAGACCCAGAGGTAAGGGAACCTTTCCTCAGACCTTGCCTGGCACTCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CAA 90 bp AAGCCCCAGCCTCCTAGAAACCCGCATAGCCGAAGTGGGACCCCACAAATCAGAGTGTCCAGGTGGCCATaGGAAAGGTCGAGGCCAGCA +
Preference number: 5 (lower is better)
Translates to: KPQPPRNPHSRSGTPQIRVSRWP*ERSRPA
Trigger: TGCTGGCCTCGACCTTTCCAATGGCCACCTGGACAC...TCTGATTTGTGGGGTCCCACTTCGGCTATGCGGGTTTCTAGGAGGCTGGGGCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS TCA 90 bp GGGCTTCCAGCCCACTGCCTTGTAGAATCTCCATGCAAGCAGCGATaGCACACGGGATTTCCAGTAGCCGAGCAGCTTGGAGTACAGCCG +
Preference number: 5 (lower is better)
Translates to: GLPAHCLVESPCKQR*HTGFPVAEQLGVQP
Trigger: CGGCTGTACTCCAAGCTGCTCGGCTACTGGAAATCCCGTGTGTCATCGCTGCTTGCATGGAGATTCTACAAGGCAGTGGGCTGGAAGCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS TCA 90 bp CCCGTGGATTATCTTGTGACAGACTGGGCACTCTTGGGGCATCTGTaGACGGCGTTTACGCACCAGCTTGTCTTGGCCATCCAGGCCTGG +
Preference number: 5 (lower is better)
Translates to: PVDYLVTDWALLGHL*TAFTHQLVLAIQAW
Trigger: CCAGGCCTGGATGGCCAAGACAAGCTGGTGCGTAAACGCCGTTCACAGATGCCCCAAGAGTGCCCAGTCTGTCACAAGATAATCCACGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS GCA 90 bp TTTCCAGTAGCCGAGCAGCTTGGAGTACAGCCGGCATATTGGCGCTaGTGGTGGTCAGTGTGGCTGTGTAAGCAAACTCGAGCAGGGCAC +
Preference number: 5 (lower is better)
Translates to: FPVAEQLGVQPAYWR*WWSVWLCKQTRAGH
Trigger: GTGCCCTGCTCGAGTTTGCTTACACAGCCACACTGACCACCAGCAGCGCCAATATGCCGGCTGTACTCCAAGCTGCTCGGCTACTGGAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS CCA 90 bp ATGCAAGCAGCGATGACACACGGGATTTCCAGTAGCCGAGCAGCTTaGAGTACAGCCGGCATATTGGCGCTGCTGGTGGTCAGTGTGGCT +
Preference number: 5 (lower is better)
Translates to: MQAAMTHGISSSRAA*STAGILALLVVSVA
Trigger: AGCCACACTGACCACCAGCAGCGCCAATATGCCGGCTGTACTCCAAGCTGCTCGGCTACTGGAAATCCCGTGTGTCATCGCTGCTTGCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CAA 90 bp AAGCCCCAGCCTCCTAGAAACCCGCATAGCCGAAGTGGGACCCCACAAATCAGAAGTACAGCCGGCATATaGGCGCTGCTGGTGGTCAGT +
Preference number: 5 (lower is better)
Translates to: KPQPPRNPHSRSGTPQIRSTAGI*ALLVVS
Trigger: ACTGACCACCAGCAGCGCCAATATGCCGGCTGTACT...TCTGATTTGTGGGGTCCCACTTCGGCTATGCGGGTTTCTAGGAGGCTGGGGCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CAA 90 bp AAGGAGAGAGAGTGGAGGCCACTGTCTCCACTCTCTGGGACTAAGCCCCAGGTTAGTACAGCCGGCATATaGGCGCTGCTGGTGGTCAGT +
Preference number: 5 (lower is better)
Translates to: KEREWRPLSPLSGTKPQVSTAGI*ALLVVS
Trigger: ACTGACCACCAGCAGCGCCAATATGCCGGCTGTACT...AACCTGGGGCTTAGTCCCAGAGAGTGGAGACAGTGGCCTCCACTCTCTCTCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CAA 90 bp AAGGAGAGAGAGTGGAGGCCACTGTCTCCACTCTCTGGGACTAAGCCCCAGGTTCGTTTACGCACCAGCTaGTCTTGGCCATCCAGGCCT +
Preference number: 5 (lower is better)
Translates to: KEREWRPLSPLSGTKPQVRLRTS*SWPSRP
Trigger: AGGCCTGGATGGCCAAGACAAGCTGGTGCGTAAACG...AACCTGGGGCTTAGTCCCAGAGAGTGGAGACAGTGGCCTCCACTCTCTCTCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS CCA 90 bp ACGGGATTTCCAGTAGCCGAGCAGCTTGGAGTACAGCCGGCATATTaGCGCTGCTGGTGGTCAGTGTGGCTGTGTAAGCAAACTCGAGCA +
Preference number: 5 (lower is better)
Translates to: TGFPVAEQLGVQPAY*RCWWSVWLCKQTRA
Trigger: TGCTCGAGTTTGCTTACACAGCCACACTGACCACCAGCAGCGCCAATATGCCGGCTGTACTCCAAGCTGCTCGGCTACTGGAAATCCCGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CAA 90 bp TTTTATGTGCTCCCCGTTGCTTGGCGTGGTGTCCCAGGCTGTTCCAGCCTGCCCATGTGGATCTTCAGCTaGTCATTCCTGGTGAAGCGG +
Preference number: 5 (lower is better)
Translates to: FYVLPVAWRGVPGCSSLPMWIFS*SFLVKR
Trigger: CCGCTTCACCAGGAATGACAAGCTGAAGATCCACAT...GGGCAGGCTGGAACAGCCTGGGACACCACGCCAAGCAACGGGGAGCACATAAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS TCA 90 bp CCAATCTACCAACCATCTCTTCTTCTTCGTAGGTCAAGGGATGGGTaGGTACTGTGGGTGCCTCAGGGACCAGATGGTTTGCTCGGGCCC +
Preference number: 5 (lower is better)
Translates to: PIYQPSLLLRRSRDG*VLWVPQGPDGLLGP
Trigger: GGGCCCGAGCAAACCATCTGGTCCCTGAGGCACCCACAGTACTCACCCATCCCTTGACCTACGAAGAAGAAGAGATGGTTGGTAGATTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS GCA 90 bp CATCTCTTCTTCTTCGTAGGTCAAGGGATGGGTGAGTACTGTGGGTaGCTCAGGGACCAGATGGTTTGCTCGGGCCCCTTTGGTTTGAAG +
Preference number: 5 (lower is better)
Translates to: HLFFFVGQGMGEYCG*LRDQMVCSGPFGLK
Trigger: CTTCAAACCAAAGGGGCCCGAGCAAACCATCTGGTCCCTGAGGCACCCACAGTACTCACCCATCCCTTGACCTACGAAGAAGAAGAGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CAA 90 bp CCACAAATCAGAGATAGATTATTGCTTCAATTCCCCAGTAGTGGCTGGGGACAGAGTACAGCCGGCATATaGGCGCTGCTGGTGGTCAGT +
Preference number: 5 (lower is better)
Translates to: PQIRDRLLLQFPSSGWGQSTAGI*ALLVVS
Trigger: ACTGACCACCAGCAGCGCCAATATGCCGGCTGTACT...CTGTCCCCAGCCACTACTGGGGAATTGAAGCAATAATCTATCTCTGATTTGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CAA 90 bp CCACAAATCAGAGATAGATTATTGCTTCAATTCCCCAGTAGTGGCTGGGGACAGTCGGGCCCCTTTGGTTaGAAGAAAAGCTTTCCGGGG +
Preference number: 5 (lower is better)
Translates to: PQIRDRLLLQFPSSGWGQSGPFG*KKSFPG
Trigger: CCCCGGAAAGCTTTTCTTCAAACCAAAGGGGCCCGA...CTGTCCCCAGCCACTACTGGGGAATTGAAGCAATAATCTATCTCTGATTTGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS-3UTR CAA 90 bp CCACAAATCAGAGATAGATTATTGCTTCAATTCCCCAGTAGTGGCTGGGGACAGATGTGGATCTTCAGCTaGTCATTCCTGGTGAAGCGG +
Preference number: 5 (lower is better)
Translates to: PQIRDRLLLQFPSSGWGQMWIFS*SFLVKR
Trigger: CCGCTTCACCAGGAATGACAAGCTGAAGATCCACAT...CTGTCCCCAGCCACTACTGGGGAATTGAAGCAATAATCTATCTCTGATTTGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS TCA 72 bp CAGGTGGCCATTGGAAAGGTCGAGGCCAGCAGGGGATaGGGTGGTGGTCGAGGGCGGTGGGTAGTGAGGGGC +
Preference number: 6 (lower is better)
Translates to: QVAIGKVEASRG*GGGRGRWVVRG
Trigger: GCCCCTCACTACCCACCGCCCTCGACCACCACCTCATCCCCTGCTGGCCTCGACCTTTCCAATGGCCACCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS TCA 72 bp GCCTTCGGGTGCGCACCTCCAGGCAGTTCTGACCCTTaGGATGGCGCTGCAGGTGGTCCTCCTTGGCGAAGG +
Preference number: 6 (lower is better)
Translates to: AFGCAPPGSSDP*DGAAGGPPWRR
Trigger: CCTTCGCCAAGGAGGACCACCTGCAGCGCCATCTCAAGGGTCAGAACTGCCTGGAGGTGCGCACCCGAAGGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS CCA 72 bp CTCTTCCTCCTCCTCAGGGGGCCCTTGTGTAGTGACTaGGGGTCCCGTGGTGGCCGACTGCTCCCAGAATCG +
Preference number: 6 (lower is better)
Translates to: LFLLLRGPLCSD*GSRGGRLLPES
Trigger: CGATTCTGGGAGCAGTCGGCCACCACGGGACCCCCAGTCACTACACAAGGGCCCCCTGAGGAGGAGGAAGAG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS CAA 90 bp TGGTGTGGTGGGTGTCCCTTCCTCTTCCTCCTCCTCAGGGGGCCCTaGTGTAGTGACTGGGGGTCCCGTGGTGGCCGACTGCTCCCAGAA +
Preference number: 6 (lower is better)
Translates to: WCGGCPFLFLLLRGP*CSDWGSRGGRLLPE
Trigger: TTCTGGGAGCAGTCGGCCACCACGGGACCCCCAGTCACTACACAAGGGCCCCCTGAGGAGGAGGAAGAGGAAGGGACACCCACCACACCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS GCA 72 bp CTTTGGTTTGAAGAAAAGCTTTCCGGGGTTTGCGGCTaGGACGGGCAACAGGTCGAGGTGGCGGTGGCGGCG +
Preference number: 6 (lower is better)
Translates to: LWFEEKLSGVCG*DGQQVEVAVAA
Trigger: CGCCGCCACCGCCACCTCGACCTGTTGCCCGTCGCAGCCGCAAACCCCGGAAAGCTTTTCTTCAAACCAAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS CAA 72 bp GGTAGGAGGGGCACCTGTGGAGGGCTGTCTTCACCGTaGGGCATTCCTGAGGTTGAGGCTGTGGTGGTGGCA +
Preference number: 6 (lower is better)
Translates to: GRRGTCGGLSSP*GIPEVEAVVVA
Trigger: TGCCACCACCACAGCCTCAACCTCAGGAATGCCCAACGGTGAAGACAGCCCTCCACAGGTGCCCCTCCTACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS CCA 72 bp ACTGTCGGGCTCGCTCACAGTCATCCTCATCGGGGCTaGGGGCTTCCAGCCCACTGCCTTGTAGAATCTCCA +
Preference number: 6 (lower is better)
Translates to: TVGLAHSHPHRG*GLPAHCLVESP
Trigger: TGGAGATTCTACAAGGCAGTGGGCTGGAAGCCCCCAGCCCCGATGAGGATGACTGTGAGCGAGCCCGACAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS CCA 72 bp CACCGTTGGGCATTCCTGAGGTTGAGGCTGTGGTGGTaGCAGTGGCAAAAGCCTCCAGGTACTGTCGGGCTC +
Preference number: 6 (lower is better)
Translates to: HRWAFLRLRLWW*QWQKPPGTVGL
Trigger: GAGCCCGACAGTACCTGGAGGCTTTTGCCACTGCCACCACCACAGCCTCAACCTCAGGAATGCCCAACGGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS CCA 72 bp GTGGCCGACTGCTCCCAGAATCGAGCCAGAGAGAGGTaGAAGGTGTCCAGGTGGCCATTGGAAAGGTCGAGG +
Preference number: 6 (lower is better)
Translates to: VADCSQNRARER*KVSRWPLERSR
Trigger: CCTCGACCTTTCCAATGGCCACCTGGACACCTTCCACCTCTCTCTGGCTCGATTCTGGGAGCAGTCGGCCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS CCA 72 bp GTACAGCCGGCATATTGGCGCTGCTGGTGGTCAGTGTaGCTGTGTAAGCAAACTCGAGCAGGGCACCTAGGG +
Preference number: 6 (lower is better)
Translates to: VQPAYWRCWWSV*LCKQTRAGHLG
Trigger: CCCTAGGTGCCCTGCTCGAGTTTGCTTACACAGCCACACTGACCACCAGCAGCGCCAATATGCCGGCTGTAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
ENSMUST00000126027.8
CDS CCA 72 bp GCGATGACACACGGGATTTCCAGTAGCCGAGCAGCTTaGAGTACAGCCGGCATATTGGCGCTGCTGGTGGTC +
Preference number: 6 (lower is better)
Translates to: AMTHGISSSRAA*STAGILALLVV
Trigger: GACCACCAGCAGCGCCAATATGCCGGCTGTACTCCAAGCTGCTCGGCTACTGGAAATCCCGTGTGTCATCGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS TCA 72 bp TGCCGAGGCAGTTTGCCTGCCCCGTGGATTATCTTGTaGCAGACTGGGCACTCTTGGGGCATCTGTGAACGG +
Preference number: 6 (lower is better)
Translates to: CRGSLPAPWIIL*QTGHSWGICER
Trigger: CCGTTCACAGATGCCCCAAGAGTGCCCAGTCTGTCACAAGATAATCCACGGGGCAGGCAAACTGCCTCGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS GCA 72 bp GCCGAGCAGCTTGGAGTACAGCCGGCATATTGGCGCTaGTGGTGGTCAGTGTGGCTGTGTAAGCAAACTCGA +
Preference number: 6 (lower is better)
Translates to: AEQLGVQPAYWR*WWSVWLCKQTR
Trigger: TCGAGTTTGCTTACACAGCCACACTGACCACCAGCAGCGCCAATATGCCGGCTGTACTCCAAGCTGCTCGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS CCA 72 bp CAGCTTGGAGTACAGCCGGCATATTGGCGCTGCTGGTaGTCAGTGTGGCTGTGTAAGCAAACTCGAGCAGGG +
Preference number: 6 (lower is better)
Translates to: QLGVQPAYWRCW*SVWLCKQTRAG
Trigger: CCCTGCTCGAGTTTGCTTACACAGCCACACTGACCACCAGCAGCGCCAATATGCCGGCTGTACTCCAAGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS CCA 72 bp CCAGTAGCCGAGCAGCTTGGAGTACAGCCGGCATATTaGCGCTGCTGGTGGTCAGTGTGGCTGTGTAAGCAA +
Preference number: 6 (lower is better)
Translates to: PVAEQLGVQPAY*RCWWSVWLCKQ
Trigger: TTGCTTACACAGCCACACTGACCACCAGCAGCGCCAATATGCCGGCTGTACTCCAAGCTGCTCGGCTACTGG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS GCA 72 bp TTCTTCGTAGGTCAAGGGATGGGTGAGTACTGTGGGTaGCTCAGGGACCAGATGGTTTGCTCGGGCCCCTTT +
Preference number: 6 (lower is better)
Translates to: FFVGQGMGEYCG*LRDQMVCSGPF
Trigger: AAAGGGGCCCGAGCAAACCATCTGGTCCCTGAGGCACCCACAGTACTCACCCATCCCTTGACCTACGAAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS CCA 72 bp TGTCTTCACCGTTGGGCATTCCTGAGGTTGAGGCTGTaGTGGTGGCAGTGGCAAAAGCCTCCAGGTACTGTC +
Preference number: 6 (lower is better)
Translates to: CLHRWAFLRLRL*WWQWQKPPGTV
Trigger: GACAGTACCTGGAGGCTTTTGCCACTGCCACCACCACAGCCTCAACCTCAGGAATGCCCAACGGTGAAGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS TCA 72 bp GCCCACTGCCTTGTAGAATCTCCATGCAAGCAGCGATaGCACACGGGATTTCCAGTAGCCGAGCAGCTTGGA +
Preference number: 6 (lower is better)
Translates to: AHCLVESPCKQR*HTGFPVAEQLG
Trigger: TCCAAGCTGCTCGGCTACTGGAAATCCCGTGTGTCATCGCTGCTTGCATGGAGATTCTACAAGGCAGTGGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS TCA 72 bp TTCAAAGACTTCATAGTTCAGGGGCCCCTCGGCAGGTaGGGCGGCACCTGTAGGAGGACTATAGCTATCTCC +
Preference number: 6 (lower is better)
Translates to: FKDFIVQGPLGR*GGTCRRTIAIS
Trigger: GGAGATAGCTATAGTCCTCCTACAGGTGCCGCCTCACCTGCCGAGGGGCCCCTGAACTATGAAGTCTTTGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS GCA 72 bp GGTGAGTACTGTGGGTGCCTCAGGGACCAGATGGTTTaGTCGGGCCCCTTTGGTTTGAAGAAAAGCTTTCCG +
Preference number: 6 (lower is better)
Translates to: GEYCGCLRDQMV*SGPFGLKKSFP
Trigger: CGGAAAGCTTTTCTTCAAACCAAAGGGGCCCGAGCAAACCATCTGGTCCCTGAGGCACCCACAGTACTCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS TCA 72 bp TATCTTGTGACAGACTGGGCACTCTTGGGGCATCTGTaGACGGCGTTTACGCACCAGCTTGTCTTGGCCATC +
Preference number: 6 (lower is better)
Translates to: YLVTDWALLGHL*TAFTHQLVLAI
Trigger: GATGGCCAAGACAAGCTGGTGCGTAAACGCCGTTCACAGATGCCCCAAGAGTGCCCAGTCTGTCACAAGATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8
CDS TCA 72 bp CAACCATCTCTTCTTCTTCGTAGGTCAAGGGATGGGTaGGTACTGTGGGTGCCTCAGGGACCAGATGGTTTG +
Preference number: 6 (lower is better)
Translates to: QPSLLLRRSRDG*VLWVPQGPDGL
Trigger: CAAACCATCTGGTCCCTGAGGCACCCACAGTACTCACCCATCCCTTGACCTACGAAGAAGAAGAGATGGTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029677.9
ENSMUST00000107432.8
ENSMUST00000107433.8
ENSMUST00000107435.8