Pregenerated sensors for YWHAH (Mus musculus)
Ensembl gene IDs: ENSMUSG00000018965Ensembl transcript IDs: ENSMUST00000019109.8
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GTTCAGAACACACTTCTCTGCACAATTCAAAAAGGAAGCGCCCTGTaGCTCAAAGCAACCATCAGTCCAGCAAATGCCCATGAAGGTTTA | + |
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Preference number: 1 (lower is better) Translates to: VQNTLLCTIQKGSAL*LKATISPANAHEGL Trigger: TAAACCTTCATGGGCATTTGCTGGACTGATGGTTGCTTTGAGTCACAGGGCGCTTCCTTTTTGAATTGTGCAGAGAAGTGTGTTCTGAAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019109.8 |
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| 3UTR CCA 90 bp | ACAAAACACTATCAGCTTGTTTTAAATAGCAGCCATAGCCTGTGTTaGCTAATTCTCCTTTCTACACTCAATTACCATCACCTGGATTTG | + |
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Preference number: 1 (lower is better) Translates to: TKHYQLVLNSSHSLC*LILLSTLNYHHLDL Trigger: CAAATCCAGGTGATGGTAATTGAGTGTAGAAAGGAGAATTAGCCAACACAGGCTATGGCTGCTATTTAAAACAAGCTGATAGTGTTTTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019109.8 |
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| 3UTR-3UTR TCA 90 bp | AAACACTATCAGCTTGTTTTAAATAGCAGCCATAGCCTGTGTTGGCTAATTCTCAAAGGAAGCGCCCTGTaGCTCAAAGCAACCATCAGT | + |
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Preference number: 2 (lower is better) Translates to: KHYQLVLNSSHSLCWLILKGSAL*LKATIS Trigger: ACTGATGGTTGCTTTGAGTCACAGGGCGCTTCCTTT...GAGAATTAGCCAACACAGGCTATGGCTGCTATTTAAAACAAGCTGATAGTGTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019109.8 |
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| 3UTR-3UTR GCA 90 bp | AAACACTATCAGCTTGTTTTAAATAGCAGCCATAGCCTGTGTTGGCTAATTCTCCAGAACACACTTCTCTaGACAATTCAAAAAGGAAGC | + |
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Preference number: 2 (lower is better) Translates to: KHYQLVLNSSHSLCWLILQNTLL*TIQKGS Trigger: GCTTCCTTTTTGAATTGTGCAGAGAAGTGTGTTCTG...GAGAATTAGCCAACACAGGCTATGGCTGCTATTTAAAACAAGCTGATAGTGTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019109.8 |
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| 3UTR TCA 72 bp | ACACTTCTCTGCACAATTCAAAAAGGAAGCGCCCTGTaGCTCAAAGCAACCATCAGTCCAGCAAATGCCCAT | + |
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Preference number: 3 (lower is better) Translates to: TLLCTIQKGSAL*LKATISPANAH Trigger: ATGGGCATTTGCTGGACTGATGGTTGCTTTGAGTCACAGGGCGCTTCCTTTTTGAATTGTGCAGAGAAGTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019109.8 |
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| 3UTR-3UTR CAA 90 bp | AAACACTATCAGCTTGTTTTAAATAGCAGCCATAGCCTGTGTTGGCTAATTCTCTACCATCACCTGGATTaGCTAGAGATCAACAGACAT | + |
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Preference number: 3 (lower is better) Translates to: KHYQLVLNSSHSLCWLILYHHLD*LEINRH Trigger: ATGTCTGTTGATCTCTAGCAAATCCAGGTGATGGTA...GAGAATTAGCCAACACAGGCTATGGCTGCTATTTAAAACAAGCTGATAGTGTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019109.8 |
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| 3UTR CCA 72 bp | TATCAGCTTGTTTTAAATAGCAGCCATAGCCTGTGTTaGCTAATTCTCCTTTCTACACTCAATTACCATCAC | + |
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Preference number: 3 (lower is better) Translates to: YQLVLNSSHSLC*LILLSTLNYHH Trigger: GTGATGGTAATTGAGTGTAGAAAGGAGAATTAGCCAACACAGGCTATGGCTGCTATTTAAAACAAGCTGATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019109.8 |
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| CDS-3UTR GCA 90 bp | GTGTTGGCTAATTCTCCTTTCTACACTCAATTACCATCACCTGGATTTGCTAGAGCCAGTCGCGCCCGCTaGAGCAGCTGCTCTCGATCC | + |
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Preference number: 4 (lower is better) Translates to: VLANSPFYTQLPSPGFARASRAR*SSCSRS Trigger: GGATCGAGAGCAGCTGCTGCAGCGGGCGCGACTGGC...TCTAGCAAATCCAGGTGATGGTAATTGAGTGTAGAAAGGAGAATTAGCCAACAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019109.8 |
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| CDS-3UTR CCA 90 bp | ATCAGTCCAGCAAATGCCCATGAAGGTTTATCTGAAACTGCTTCCCAAGGGACACTGTCACCGCCTTCATaGCGGAGGCCATATCGTCGT | + |
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Preference number: 4 (lower is better) Translates to: ISPANAHEGLSETASQGTLSPPS*RRPYRR Trigger: ACGACGATATGGCCTCCGCCATGAAGGCGGTGACAG...TGTCCCTTGGGAAGCAGTTTCAGATAAACCTTCATGGGCATTTGCTGGACTGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019109.8 |
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| CDS-3UTR CCA 90 bp | GCTGTGCTGCCAATACAGATAGGTTTAGCACTAGATATAGTGATTGTGGCAAGGCATCGAAGGCTTGTTTaGCTAAGAGGCAGGCTTGCT | + |
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Preference number: 4 (lower is better) Translates to: AVLPIQIGLALDIVIVARHRRLV*LRGRLA Trigger: AGCAAGCCTGCCTCTTAGCCAAACAAGCCTTCGATG...CCTTGCCACAATCACTATATCTAGTGCTAAACCTATCTGTATTGGCAGCACAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019109.8 |
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| CDS-3UTR GCA 90 bp | GTGTTGGCTAATTCTCCTTTCTACACTCAATTACCATCACCTGGATTTGCTAGAGCTAAGAGGCAGGCTTaGTCTGGTGCATTCTGGATC | + |
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Preference number: 4 (lower is better) Translates to: VLANSPFYTQLPSPGFARAKRQA*SGAFWI Trigger: GATCCAGAATGCACCAGAGCAAGCCTGCCTCTTAGC...TCTAGCAAATCCAGGTGATGGTAATTGAGTGTAGAAAGGAGAATTAGCCAACAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019109.8 |
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| CDS-3UTR GCA 90 bp | TGTTGGCTAATTCTCCTTTCTACACTCAATTACCATCACCTGGATTTGCTAGAGGAGCCAAGACATCATTaGAAACTGTCTCCAGCTCCT | + |
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Preference number: 4 (lower is better) Translates to: CWLILLSTLNYHHLDLLEEPRHH*KLSPAP Trigger: AGGAGCTGGAGACAGTTTGCAATGATGTCTTGGCTC...CTCTAGCAAATCCAGGTGATGGTAATTGAGTGTAGAAAGGAGAATTAGCCAACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019109.8 |
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| CDS-3UTR GCA 90 bp | GTGTTGGCTAATTCTCCTTTCTACACTCAATTACCATCACCTGGATTTGCTAGAATGGGGTGTGTTGGCTaGATGTGCTCTTTGCTGATT | + |
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Preference number: 4 (lower is better) Translates to: VLANSPFYTQLPSPGFARMGCVG*MCSLLI Trigger: AATCAGCAAAGAGCACATGCAGCCAACACACCCCAT...TCTAGCAAATCCAGGTGATGGTAATTGAGTGTAGAAAGGAGAATTAGCCAACAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019109.8 |
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| CDS-3UTR TCA 90 bp | GCTGTGCTGCCAATACAGATAGGTTTAGCACTAGATATAGTGATTGTGGCAAGGACCTTGCTCTCATACTaGAAATCATTGCAGTTCTTG | + |
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Preference number: 4 (lower is better) Translates to: AVLPIQIGLALDIVIVARTLLSY*KSLQFL Trigger: CAAGAACTGCAATGATTTTCAGTATGAGAGCAAGGT...CCTTGCCACAATCACTATATCTAGTGCTAAACCTATCTGTATTGGCAGCACAGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019109.8 |
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| CDS-3UTR GCA 90 bp | CCTGTGTTGGCTAATTCTCCTTTCTACACTCAATTACCATCACCTGGATTTGCTTCAGGTAGAACACCTTaGTCTCATACTGAAAATCAT | + |
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Preference number: 4 (lower is better) Translates to: PVLANSPFYTQLPSPGFASGRTP*SHTENH Trigger: ATGATTTTCAGTATGAGAGCAAGGTGTTCTACCTGA...AGCAAATCCAGGTGATGGTAATTGAGTGTAGAAAGGAGAATTAGCCAACACAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019109.8 |
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| CDS-3UTR CAA 90 bp | GCAAATGCCCATGAAGGTTTATCTGAAACTGCTTCCCAAGGGACAGGAGGGCAGGCCGGATGGGGTGTGTaGGCTGCATGTGCTCTTTGC | + |
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Preference number: 5 (lower is better) Translates to: ANAHEGLSETASQGTGGQAGWGV*AACALC Trigger: GCAAAGAGCACATGCAGCCAACACACCCCATCCGGC...CTGCCCTCCTGTCCCTTGGGAAGCAGTTTCAGATAAACCTTCATGGGCATTTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019109.8 |
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| CDS-3UTR CAA 90 bp | GCAAATGCCCATGAAGGTTTATCTGAAACTGCTTCCCAAGGGACAGGAGGGCAGGGCTGCATGTGCTCTTaGCTGATTTCGAAGGCTTCC | + |
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Preference number: 5 (lower is better) Translates to: ANAHEGLSETASQGTGGQGCMCS*LISKAS Trigger: GGAAGCCTTCGAAATCAGCAAAGAGCACATGCAGCC...CTGCCCTCCTGTCCCTTGGGAAGCAGTTTCAGATAAACCTTCATGGGCATTTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019109.8 |
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| CDS-3UTR CAA 90 bp | CCTGTGTTGGCTAATTCTCCTTTCTACACTCAATTACCATCACCTGGATTTGCTTCATCGAAGGCTTGTTaGGCTAAGAGGCAGGCTTGC | + |
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Preference number: 5 (lower is better) Translates to: PVLANSPFYTQLPSPGFASSKAC*AKRQAC Trigger: GCAAGCCTGCCTCTTAGCCAAACAAGCCTTCGATGA...AGCAAATCCAGGTGATGGTAATTGAGTGTAGAAAGGAGAATTAGCCAACACAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019109.8 |
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| CDS-3UTR CAA 90 bp | GTGTTGGCTAATTCTCCTTTCTACACTCAATTACCATCACCTGGATTTGCTAGAAGAGCCAAGACATCATaGCAAACTGTCTCCAGCTCC | + |
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Preference number: 5 (lower is better) Translates to: VLANSPFYTQLPSPGFARRAKTS*QTVSSS Trigger: GGAGCTGGAGACAGTTTGCAATGATGTCTTGGCTCT...TCTAGCAAATCCAGGTGATGGTAATTGAGTGTAGAAAGGAGAATTAGCCAACAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019109.8 |
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| CDS-3UTR CAA 90 bp | ATCAGTCCAGCAAATGCCCATGAAGGTTTATCTGAAACTGCTTCCCAAGGGACAAAATCATTGCAGTTCTaGATAAGGAACTTGTCAAGC | + |
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Preference number: 5 (lower is better) Translates to: ISPANAHEGLSETASQGTKSLQF*IRNLSS Trigger: GCTTGACAAGTTCCTTATCAAGAACTGCAATGATTT...TGTCCCTTGGGAAGCAGTTTCAGATAAACCTTCATGGGCATTTGCTGGACTGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019109.8 |
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| CDS-3UTR CAA 90 bp | GTGTTGGCTAATTCTCCTTTCTACACTCAATTACCATCACCTGGATTTGCTAGATTCTTGATAAGGAACTaGTCAAGCAGAGCCAAGACA | + |
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Preference number: 5 (lower is better) Translates to: VLANSPFYTQLPSPGFARFLIRN*SSRAKT Trigger: TGTCTTGGCTCTGCTTGACAAGTTCCTTATCAAGAA...TCTAGCAAATCCAGGTGATGGTAATTGAGTGTAGAAAGGAGAATTAGCCAACAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019109.8 |
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