Pregenerated sensors for YWHAE (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020849

Ensembl transcript IDs: ENSMUST00000067664.10

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 90 bp	CATAAATATTGTGTTGCTAACTGGTTTGAAAGACAGGACAATTACTaGCTTAGTTGTTCAACACCAGATTACAAGCAATCCTCCCTTCCC	+
Preference number: 1 (lower is better) Translates to: HKYCVANWFERQDNY*LSCSTPDYKQSSLP Trigger: GGGAAGGGAGGATTGCTTGTAATCTGGTGTTGAACAACTAAGTCAGTAATTGTCCTGTCTTTCAAACCAGTTAGCAACACAATATTTATG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067664.10
3UTR-3UTR TCA 90 bp	CTAACTGGTTTGAAAGACAGGACAATTACTGACTTAGTTGTTCAACACCAGATTCTGAACAAAAGAGGTTaGGCGAGCGAAGGAGGGGAG	+
Preference number: 2 (lower is better) Translates to: LTGLKDRTITDLVVQHQILNKRG*ASEGGE Trigger: CTCCCCTCCTTCGCTCGCTCAACCTCTTTTGTTCAG...AATCTGGTGTTGAACAACTAAGTCAGTAATTGTCCTGTCTTTCAAACCAGTTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067664.10
3UTR-3UTR CAA 90 bp	AGGTTGAGCGAGCGAAGGAGGGGAGGAGGGAGGCCGAGGAGGAGGGAGGAGGAATTTCTAATGATGATCTaGCCAGTGTGGCCGGAGACA	+
Preference number: 3 (lower is better) Translates to: RLSERRRGGGRPRRREEEFLMMI*PVWPET Trigger: TGTCTCCGGCCACACTGGCAAGATCATCATTAGAAA...TTCCTCCTCCCTCCTCCTCGGCCTCCCTCCTCCCCTCCTTCGCTCGCTCAACCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067664.10
3UTR-3UTR CAA 90 bp	CTAACTGGTTTGAAAGACAGGACAATTACTGACTTAGTTGTTCAACACCAGATTACTGAACAAAAGAGGTaGAGCGAGCGAAGGAGGGGA	+
Preference number: 3 (lower is better) Translates to: LTGLKDRTITDLVVQHQITEQKR*SERRRG Trigger: TCCCCTCCTTCGCTCGCTCAACCTCTTTTGTTCAGT...AATCTGGTGTTGAACAACTAAGTCAGTAATTGTCCTGTCTTTCAAACCAGTTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067664.10
3UTR TCA 72 bp	TGTGTTGCTAACTGGTTTGAAAGACAGGACAATTACTaGCTTAGTTGTTCAACACCAGATTACAAGCAATCC	+
Preference number: 3 (lower is better) Translates to: CVANWFERQDNY*LSCSTPDYKQS Trigger: GGATTGCTTGTAATCTGGTGTTGAACAACTAAGTCAGTAATTGTCCTGTCTTTCAAACCAGTTAGCAACACA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067664.10
CDS-3UTR TCA 90 bp	AGGTTGAGCGAGCGAAGGAGGGGAGGAGGGAGGCCGAGGAGGAGGGAGGAGGAAATCACCCTGCATGTCTaGGGTCCACAGCGTCAGGTT	+
Preference number: 4 (lower is better) Translates to: RLSERRRGGGRPRRREEEITLHV*GPQRQV Trigger: AACCTGACGCTGTGGACCTCAGACATGCAGGGTGAT...TTCCTCCTCCCTCCTCCTCGGCCTCCCTCCTCCCCTCCTTCGCTCGCTCAACCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067664.10
CDS-3UTR GCA 90 bp	GGAGGGGAGGAGGGAGGCCGAGGAGGAGGGAGGAGGAACAGAGTTGAACACGCACCTAAACGAATGGGGTaGGTTGGAGGAAGTTCTGTC	+
Preference number: 4 (lower is better) Translates to: GGEEGGRGGGRRNRVEHAPKRMG*VGGSSV Trigger: GACAGAACTTCCTCCAACGCACCCCATTCGTTTAGG...TGCGTGTTCAACTCTGTTCCTCCTCCCTCCTCCTCGGCCTCCCTCCTCCCCTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067664.10
CDS-3UTR GCA 90 bp	TTGAGCGAGCGAAGGAGGGGAGGAGGGAGGCCGAGGAGGAGGGAGGAGGAACAGTCAGTTTCAACCATTTaGCGGTACTCCCGAATCATC	+
Preference number: 4 (lower is better) Translates to: LSERRRGGGRPRRREEEQSVSTI*RYSRII Trigger: GATGATTCGGGAGTACCGGCAAATGGTTGAAACTGA...CTGTTCCTCCTCCCTCCTCCTCGGCCTCCCTCCTCCCCTCCTTCGCTCGCTCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067664.10
CDS-3UTR CAA 90 bp	CTAACTGGTTTGAAAGACAGGACAATTACTGACTTAGTTGTTCAACACCAGATTCTCAGTTTCAACCATTaGCCGGTACTCCCGAATCAT	+
Preference number: 5 (lower is better) Translates to: LTGLKDRTITDLVVQHQILSFNH*PVLPNH Trigger: ATGATTCGGGAGTACCGGCAAATGGTTGAAACTGAG...AATCTGGTGTTGAACAACTAAGTCAGTAATTGTCCTGTCTTTCAAACCAGTTAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067664.10