Pregenerated sensors for YTHDF2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040025Ensembl transcript IDs: ENSMUST00000152796.8, ENSMUST00000165072.2
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TGGCAGAGGTGGCTGGAGAGTGGCTCAGCGGTCAGGAGCACTGACTaGTCTTCCAGAGATTCTGAGTTCAATTCCCCGAAACCACAAGGT | + |
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Preference number: 1 (lower is better) Translates to: WQRWLESGSAVRSTD*SSRDSEFNSPKPQG Trigger: ACCTTGTGGTTTCGGGGAATTGAACTCAGAATCTCTGGAAGAGCAGTCAGTGCTCCTGACCGCTGAGCCACTCTCCAGCCACCTCTGCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| 3UTR CCA 90 bp | ACTGAGCGATATCCCAGCATCCCTGAGCTGCCTTTCTTAGCAGTCTaGCTGTGTGAGCACGGCCCTGCATTCCAGTGTAACACTGTCCAC | + |
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Preference number: 1 (lower is better) Translates to: TERYPSIPELPFLAV*LCEHGPAFQCNTVH Trigger: GTGGACAGTGTTACACTGGAATGCAGGGCCGTGCTCACACAGCCAGACTGCTAAGAAAGGCAGCTCAGGGATGCTGGGATATCGCTCAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| 3UTR-3UTR TCA 90 bp | GGTGGCTGGAGAGTGGCTCAGCGGTCAGGAGCACTGACTGCTCTTCCAGAGATTGCAGGGCACACCGGCTaGCTGAGCGATATCCCAGCA | + |
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Preference number: 2 (lower is better) Translates to: GGWRVAQRSGALTALPEIAGHTG*LSDIPA Trigger: TGCTGGGATATCGCTCAGTCAGCCGGTGTGCCCTGC...AATCTCTGGAAGAGCAGTCAGTGCTCCTGACCGCTGAGCCACTCTCCAGCCACC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| 3UTR-3UTR GCA 90 bp | GGTGGCTGGAGAGTGGCTCAGCGGTCAGGAGCACTGACTGCTCTTCCAGAGATTAGGCATGCAACACCATaGAGGGCCATTAACACAAAC | + |
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Preference number: 2 (lower is better) Translates to: GGWRVAQRSGALTALPEIRHATP*RAINTN Trigger: GTTTGTGTTAATGGCCCTGCATGGTGTTGCATGCCT...AATCTCTGGAAGAGCAGTCAGTGCTCCTGACCGCTGAGCCACTCTCCAGCCACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| 3UTR-3UTR GCA 90 bp | GGCTGGAGAGTGGCTCAGCGGTCAGGAGCACTGACTGCTCTTCCAGAGATTCTGCTCCCGTCTCCTAAATaGAAGGATTACAGGCATGCA | + |
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Preference number: 2 (lower is better) Translates to: GWRVAQRSGALTALPEILLPSPK*KDYRHA Trigger: TGCATGCCTGTAATCCTTGCATTTAGGAGACGGGAG...CAGAATCTCTGGAAGAGCAGTCAGTGCTCCTGACCGCTGAGCCACTCTCCAGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| 3UTR-3UTR TCA 90 bp | TCTTCTGGTGTGCATGAAGAGAGCGTGCTCATATGCATAAATAAACCTTTAAAAAGCAGTCTGGCTGTGTaGGCACGGCCCTGCATTCCA | + |
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Preference number: 2 (lower is better) Translates to: SSGVHEESVLICINKPLKSSLAV*ARPCIP Trigger: TGGAATGCAGGGCCGTGCTCACACAGCCAGACTGCT...TTTTAAAGGTTTATTTATGCATATGAGCACGCTCTCTTCATGCACACCAGAAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| 3UTR-3UTR CCA 90 bp | TCCTCTGTGAGTTCCACTAGAATTTCATTTTTGGGACCTACATCTCTGGGGCATTCAAATAATACTAAGTaGTACTGGAGTGATGCTCGA | + |
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Preference number: 2 (lower is better) Translates to: SSVSSTRISFLGPTSLGHSNNTK*YWSDAR Trigger: TCGAGCATCACTCCAGTACCACTTAGTATTATTTGA...ATGCCCCAGAGATGTAGGTCCCAAAAATGAAATTCTAGTGGAACTCACAGAGGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| 3UTR GCA 72 bp | CGTGCCTTTGCTGGCTACAATGCTAGAAACCAACACTaGTTTTCCTTGATGGCGCAGGGCACACCGGCTGAC | + |
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Preference number: 3 (lower is better) Translates to: RAFAGYNARNQH*FSLMAQGTPAD Trigger: GTCAGCCGGTGTGCCCTGCGCCATCAAGGAAAAGCAGTGTTGGTTTCTAGCATTGTAGCCAGCAAAGGCACG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| 3UTR CCA 72 bp | TATCCCAGCATCCCTGAGCTGCCTTTCTTAGCAGTCTaGCTGTGTGAGCACGGCCCTGCATTCCAGTGTAAC | + |
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Preference number: 3 (lower is better) Translates to: YPSIPELPFLAV*LCEHGPAFQCN Trigger: GTTACACTGGAATGCAGGGCCGTGCTCACACAGCCAGACTGCTAAGAAAGGCAGCTCAGGGATGCTGGGATA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| 3UTR GCA 72 bp | TGGCTGGAGAGTGGCTCAGCGGTCAGGAGCACTGACTaGTCTTCCAGAGATTCTGAGTTCAATTCCCCGAAA | + |
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Preference number: 3 (lower is better) Translates to: WLESGSAVRSTD*SSRDSEFNSPK Trigger: TTTCGGGGAATTGAACTCAGAATCTCTGGAAGAGCAGTCAGTGCTCCTGACCGCTGAGCCACTCTCCAGCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| 3UTR-3UTR CAA 90 bp | GGTGGCTGGAGAGTGGCTCAGCGGTCAGGAGCACTGACTGCTCTTCCAGAGATTACTAGAATTTCATTTTaGGGACCTACATCTCTGGGG | + |
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Preference number: 3 (lower is better) Translates to: GGWRVAQRSGALTALPEITRISF*GPTSLG Trigger: CCCCAGAGATGTAGGTCCCAAAAATGAAATTCTAGT...AATCTCTGGAAGAGCAGTCAGTGCTCCTGACCGCTGAGCCACTCTCCAGCCACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| 3UTR TCA 72 bp | CAAGGTGGCTCACAGCTAGCTATCTGTAATGGGATCTaGTGCTCTCTTCTGGTGTGCATGAAGAGAGCGTGC | + |
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Preference number: 3 (lower is better) Translates to: QGGSQLAICNGI*CSLLVCMKRAC Trigger: GCACGCTCTCTTCATGCACACCAGAAGAGAGCATCAGATCCCATTACAGATAGCTAGCTGTGAGCCACCTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| 3UTR GCA 72 bp | ATACTGGATCAGACACTTACATACTGGGATAGTGGGTaGCACCTCTTTTTACAGGGTGAGGTTCCTATGGAA | + |
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Preference number: 3 (lower is better) Translates to: ILDQTLTYWDSG*HLFLQGEVPME Trigger: TTCCATAGGAACCTCACCCTGTAAAAAGAGGTGGCACCCACTATCCCAGTATGTAAGTGTCTGATCCAGTAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| 3UTR CCA 72 bp | TCTCTCCCCAAACACAGAGACTCAAATAATACTAAGTaGTACTGGAGTGATGCTCGACAGGCTCTCACGTTT | + |
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Preference number: 3 (lower is better) Translates to: SLPKHRDSNNTK*YWSDARQALTF Trigger: AAACGTGAGAGCCTGTCGAGCATCACTCCAGTACCACTTAGTATTATTTGAGTCTCTGTGTTTGGGGAGAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| 3UTR-3UTR CAA 90 bp | TTTTTACAGGGTGAGGTTCCTATGGAATTAGCACAGTACCTGGCACCATACACATCCAATACAACCTTTTaGTTGACAGGGTCTCATGTA | + |
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Preference number: 3 (lower is better) Translates to: FLQGEVPMELAQYLAPYTSNTTF*LTGSHV Trigger: TACATGAGACCCTGTCAACAAAAAGGTTGTATTGGA...TGTGTATGGTGCCAGGTACTGTGCTAATTCCATAGGAACCTCACCCTGTAAAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| 3UTR CCA 72 bp | GTTCCACTAGAATTTCATTTTTGGGACCTACATCTCTaGGGCATACTGTCTAAATCAGCCATATACTGGATC | + |
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Preference number: 3 (lower is better) Translates to: VPLEFHFWDLHL*GILSKSAIYWI Trigger: GATCCAGTATATGGCTGATTTAGACAGTATGCCCCAGAGATGTAGGTCCCAAAAATGAAATTCTAGTGGAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| 3UTR CCA 72 bp | ACAGTACCTGGCACCATACACACAAATACTGCTGAATaGTTTAGCAGTGCTGTGTTTTCTCTATATAAAGAA | + |
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Preference number: 3 (lower is better) Translates to: TVPGTIHTNTAE*FSSAVFSLYKE Trigger: TTCTTTATATAGAGAAAACACAGCACTGCTAAACCATTCAGCAGTATTTGTGTGTATGGTGCCAGGTACTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| CDS-3UTR GCA 90 bp | AGCCTTTGCCGTGCCTTTGCTGGCTACAATGCTAGAAACCAACACTGCTTTTCCCCTAGGGCTCCTGGTTaGCCAAACATTGCATCTGGT | + |
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Preference number: 4 (lower is better) Translates to: SLCRAFAGYNARNQHCFSPRAPG*PNIASG Trigger: ACCAGATGCAATGTTTGGGCAACCAGGAGCCCTAGG...GGAAAAGCAGTGTTGGTTTCTAGCATTGTAGCCAGCAAAGGCACGGCAAAGGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| CDS-3UTR CCA 90 bp | TTTTTACAGGGTGAGGTTCCTATGGAATTAGCACAGTACCTGGCACCATACACAGCATCTGGTAGAAAGTaGGGCTCTCCGTTGCTCAGT | + |
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Preference number: 4 (lower is better) Translates to: FLQGEVPMELAQYLAPYTASGRK*GSPLLS Trigger: ACTGAGCAACGGAGAGCCCCACTTTCTACCAGATGC...TGTGTATGGTGCCAGGTACTGTGCTAATTCCATAGGAACCTCACCCTGTAAAAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| CDS-3UTR GCA 90 bp | CCATCCTGCTCCCGTCTCCTAAATGCAAGGATTACAGGCATGCAACACCATGCATGTTACCATGCTCTGTaGTGCACCAGATATTATACT | + |
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Preference number: 4 (lower is better) Translates to: PSCSRLLNARITGMQHHACYHAL*CTRYYT Trigger: AGTATAATATCTGGTGCAGCACAGAGCATGGTAACA...TGCATGGTGTTGCATGCCTGTAATCCTTGCATTTAGGAGACGGGAGCAGGATGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| CDS-3UTR CCA 90 bp | ACAGAGACTCAAATAATACTAAGTGGTACTGGAGTGATGCTCGACAGGCTCTCAATTCGGCCTTGCCTGTaGGCTCAAGTAAGGTTCGAA | + |
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Preference number: 4 (lower is better) Translates to: TETQIILSGTGVMLDRLSIRPCL*AQVRFE Trigger: TTCGAACCTTACTTGAGCCCACAGGCAAGGCCGAAT...TGAGAGCCTGTCGAGCATCACTCCAGTACCACTTAGTATTATTTGAGTCTCTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| CDS-3UTR CCA 90 bp | ACAGAGACTCAAATAATACTAAGTGGTACTGGAGTGATGCTCGACAGGCTCTCACTCCACCTAAGGAGCTaGGTGCATAAGCGTAATTGC | + |
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Preference number: 4 (lower is better) Translates to: TETQIILSGTGVMLDRLSLHLRS*VHKRNC Trigger: GCAATTACGCTTATGCACCCAGCTCCTTAGGTGGAG...TGAGAGCCTGTCGAGCATCACTCCAGTACCACTTAGTATTATTTGAGTCTCTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| CDS-3UTR CCA 90 bp | AGCCTTTGCCGTGCCTTTGCTGGCTACAATGCTAGAAACCAACACTGCTTTTCCTATAGTATTCATGCCTaGAGCTTTATTGAGGGTCTC | + |
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Preference number: 4 (lower is better) Translates to: SLCRAFAGYNARNQHCFSYSIHA*SFIEGL Trigger: GAGACCCTCAATAAAGCTCCAGGCATGAATACTATA...GGAAAAGCAGTGTTGGTTTCTAGCATTGTAGCCAGCAAAGGCACGGCAAAGGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| 3UTR CAA 72 bp | GGCAGAAACAAATATGCACAAGCCTTTGCCGTGCCTTaGCTGGCTACAATGCTAGAAACCAACACTGCTTTT | + |
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Preference number: 4 (lower is better) Translates to: GRNKYAQAFAVP*LATMLETNTAF Trigger: AAAAGCAGTGTTGGTTTCTAGCATTGTAGCCAGCAAAGGCACGGCAAAGGCTTGTGCATATTTGTTTCTGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| CDS-3UTR GCA 90 bp | AGCAGGTTTCTAGTCCTTGGGTACAAAGCAATGTCCTTCCAATACAACCTTTTTAGTGGGGCTCTCCGTTaGTCAGTTGTCCATAAGAAG | + |
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Preference number: 4 (lower is better) Translates to: SRFLVLGYKAMSFQYNLFSGALR*SVVHKK Trigger: CTTCTTATGGACAACTGAGCAACGGAGAGCCCCACT...AAAAAGGTTGTATTGGAAGGACATTGCTTTGTACCCAAGGACTAGAAACCTGCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| CDS-3UTR TCA 90 bp | AAATCTCTCCCCAAACACAGAGACTCAAATAATACTAAGTGGTACTGGAGTGATGGGTGGTGGAAGACTTaGTCCTGCAATGCCATTCTT | + |
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Preference number: 4 (lower is better) Translates to: KSLPKHRDSNNTKWYWSDGWWKT*SCNAIL Trigger: AAGAATGGCATTGCAGGATCAAGTCTTCCACCACCC...ATCACTCCAGTACCACTTAGTATTATTTGAGTCTCTGTGTTTGGGGAGAGATTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| CDS-3UTR CCA 90 bp | TCTCTATATAAAGAACCAGAAACAGGCATTATGAATATCGTCACAGCAGGTTTCGACCCTTCCCATTCATaGAACGATAGGCGGCATCCA | + |
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Preference number: 4 (lower is better) Translates to: SLYKEPETGIMNIVTAGFDPSHS*NDRRHP Trigger: TGGATGCCGCCTATCGTTCCATGAATGGGAAGGGTC...GAAACCTGCTGTGACGATATTCATAATGCCTGTTTCTGGTTCTTTATATAGAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| CDS-3UTR TCA 90 bp | TCTCTATATAAAGAACCAGAAACAGGCATTATGAATATCGTCACAGCAGGTTTCGTTATTTCCCCATGCTaGGAAGTCAATCCCACTGGG | + |
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Preference number: 4 (lower is better) Translates to: SLYKEPETGIMNIVTAGFVISPC*EVNPTG Trigger: CCCAGTGGGATTGACTTCTCAGCATGGGGAAATAAC...GAAACCTGCTGTGACGATATTCATAATGCCTGTTTCTGGTTCTTTATATAGAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| CDS-3UTR GCA 90 bp | TCTCTATATAAAGAACCAGAAACAGGCATTATGAATATCGTCACAGCAGGTTTCGACCAAGAAATGGAGTaGTACCTAGGGCTCCTGGTT | + |
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Preference number: 4 (lower is better) Translates to: SLYKEPETGIMNIVTAGFDQEME*YLGLLV Trigger: AACCAGGAGCCCTAGGTAGCACTCCATTTCTTGGTC...GAAACCTGCTGTGACGATATTCATAATGCCTGTTTCTGGTTCTTTATATAGAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| CDS-3UTR CCA 90 bp | AAATCTCTCCCCAAACACAGAGACTCAAATAATACTAAGTGGTACTGGAGTGATGTTTCCTTGACCTTTTaGTCTCTGCTCCAAGAGGCT | + |
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Preference number: 4 (lower is better) Translates to: KSLPKHRDSNNTKWYWSDVSLTF*SLLQEA Trigger: AGCCTCTTGGAGCAGAGACCAAAAGGTCAAGGAAAC...ATCACTCCAGTACCACTTAGTATTATTTGAGTCTCTGTGTTTGGGGAGAGATTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| CDS-3UTR CCA 90 bp | TCCTCTGTGAGTTCCACTAGAATTTCATTTTTGGGACCTACATCTCTGGGGCATAGTAGGAGTCTGACATaGCAGTATATGCATTATTCG | + |
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Preference number: 4 (lower is better) Translates to: SSVSSTRISFLGPTSLGHSRSLT*QYMHYS Trigger: CGAATAATGCATATACTGCCATGTCAGACTCCTACT...ATGCCCCAGAGATGTAGGTCCCAAAAATGAAATTCTAGTGGAACTCACAGAGGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| CDS-3UTR CCA 90 bp | TTTTCTCTATATAAAGAACCAGAAACAGGCATTATGAATATCGTCACAGCAGGTACTGTCCATCAATCATaGCTCCACCTAAGGAGCTGG | + |
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Preference number: 4 (lower is better) Translates to: FSLYKEPETGIMNIVTAGTVHQS*LHLRSW Trigger: CCAGCTCCTTAGGTGGAGCCATGATTGATGGACAGT...ACCTGCTGTGACGATATTCATAATGCCTGTTTCTGGTTCTTTATATAGAGAAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| CDS-3UTR GCA 90 bp | AGCAGGTTTCTAGTCCTTGGGTACAAAGCAATGTCCTTCCAATACAACCTTTTTGTGCATAAGCGTAATTaGTACTATATCCAGAGCTTT | + |
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Preference number: 4 (lower is better) Translates to: SRFLVLGYKAMSFQYNLFVHKRN*YYIQSF Trigger: AAAGCTCTGGATATAGTAGCAATTACGCTTATGCAC...AAAAAGGTTGTATTGGAAGGACATTGCTTTGTACCCAAGGACTAGAAACCTGCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| CDS-3UTR TCA 90 bp | TCTTCTGGTGTGCATGAAGAGAGCGTGCTCATATGCATAAATAAACCTTTAAAATATTTCCCACGACCTTaGCGTTCCTTTTTAACACTT | + |
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Preference number: 4 (lower is better) Translates to: SSGVHEESVLICINKPLKYFPRP*RSFLTL Trigger: AAGTGTTAAAAAGGAACGTCAAGGTCGTGGGAAATA...TTTTAAAGGTTTATTTATGCATATGAGCACGCTCTCTTCATGCACACCAGAAGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| CDS-3UTR CAA 90 bp | GGCTGGAGAGTGGCTCAGCGGTCAGGAGCACTGACTGCTCTTCCAGAGATTCTGCTGGTTGCCCAAACATaGCATCTGGTAGAAAGTGGG | + |
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Preference number: 5 (lower is better) Translates to: GWRVAQRSGALTALPEILLVAQT*HLVESG Trigger: CCCACTTTCTACCAGATGCAATGTTTGGGCAACCAG...CAGAATCTCTGGAAGAGCAGTCAGTGCTCCTGACCGCTGAGCCACTCTCCAGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| CDS-3UTR CAA 90 bp | CCATCCTGCTCCCGTCTCCTAAATGCAAGGATTACAGGCATGCAACACCATGCATGTTTCCTTGACCTTTaGGTCTCTGCTCCAAGAGGC | + |
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Preference number: 5 (lower is better) Translates to: PSCSRLLNARITGMQHHACFLDL*VSAPRG Trigger: GCCTCTTGGAGCAGAGACCAAAAGGTCAAGGAAACA...TGCATGGTGTTGCATGCCTGTAATCCTTGCATTTAGGAGACGGGAGCAGGATGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| CDS GCA 90 bp | CTGGTTGCCCAAACATTGCATCTGGTAGAAAGTGGGGCTCTCCGTTaGTCAGTTGTCCATAAGAAGTTAGATAGGGCATGGCTGTGTCAC | + |
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Preference number: 5 (lower is better) Translates to: LVAQTLHLVESGALR*SVVHKKLDRAWLCH Trigger: GTGACACAGCCATGCCCTATCTAACTTCTTATGGACAACTGAGCAACGGAGAGCCCCACTTTCTACCAGATGCAATGTTTGGGCAACCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000152796.8 ENSMUST00000165072.2 |
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| CDS CCA 90 bp | AGCCAATGGAGGGGCTGTAGTAACTGGGTAAGTAGGAGTCTGACATaGCAGTATATGCATTATTCGGCCTTGCCTGTGGGCTCAAGTAAG | + |
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Preference number: 5 (lower is better) Translates to: SQWRGCSNWVSRSLT*QYMHYSALPVGSSK Trigger: CTTACTTGAGCCCACAGGCAAGGCCGAATAATGCATATACTGCCATGTCAGACTCCTACTTACCCAGTTACTACAGCCCCTCCATTGGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000152796.8 ENSMUST00000165072.2 |
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| CDS-3UTR CAA 90 bp | CCATCCTGCTCCCGTCTCCTAAATGCAAGGATTACAGGCATGCAACACCATGCACCTGCAATGCCATTCTaGGTCTTCAGTTTAGGCTGT | + |
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Preference number: 5 (lower is better) Translates to: PSCSRLLNARITGMQHHAPAMPF*VFSLGC Trigger: ACAGCCTAAACTGAAGACCAAGAATGGCATTGCAGG...TGCATGGTGTTGCATGCCTGTAATCCTTGCATTTAGGAGACGGGAGCAGGATGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| CDS-3UTR CAA 90 bp | AGCCTTTGCCGTGCCTTTGCTGGCTACAATGCTAGAAACCAACACTGCTTTTCCACTATATCCAGAGCTTaGAGTAGACTGTCCCTGAGA | + |
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Preference number: 5 (lower is better) Translates to: SLCRAFAGYNARNQHCFSTISRA*SRLSLR Trigger: TCTCAGGGACAGTCTACTCAAAGCTCTGGATATAGT...GGAAAAGCAGTGTTGGTTTCTAGCATTGTAGCCAGCAAAGGCACGGCAAAGGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| CDS-3UTR CAA 90 bp | AGCCTTTGCCGTGCCTTTGCTGGCTACAATGCTAGAAACCAACACTGCTTTTCCCTATTTCCCACGACCTaGACGTTCCTTTTTAACACT | + |
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Preference number: 5 (lower is better) Translates to: SLCRAFAGYNARNQHCFSLFPTT*TFLFNT Trigger: AGTGTTAAAAAGGAACGTCAAGGTCGTGGGAAATAG...GGAAAAGCAGTGTTGGTTTCTAGCATTGTAGCCAGCAAAGGCACGGCAAAGGCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| CDS-3UTR CAA 90 bp | AGCCTTTGCCGTGCCTTTGCTGGCTACAATGCTAGAAACCAACACTGCTTTTCCATGCACAGAACCATTTaGTACTTTGTTTCCTTGACC | + |
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Preference number: 5 (lower is better) Translates to: SLCRAFAGYNARNQHCFSMHRTI*YFVSLT Trigger: GGTCAAGGAAACAAAGTACAAAATGGTTCTGTGCAT...GGAAAAGCAGTGTTGGTTTCTAGCATTGTAGCCAGCAAAGGCACGGCAAAGGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| CDS-3UTR CAA 90 bp | TCTTCTGGTGTGCATGAAGAGAGCGTGCTCATATGCATAAATAAACCTTTAAAAGGGGTGGTGGAAGACTaGATCCTGCAATGCCATTCT | + |
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Preference number: 5 (lower is better) Translates to: SSGVHEESVLICINKPLKGVVED*ILQCHS Trigger: AGAATGGCATTGCAGGATCAAGTCTTCCACCACCCC...TTTTAAAGGTTTATTTATGCATATGAGCACGCTCTCTTCATGCACACCAGAAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| CDS-3UTR CAA 90 bp | TTTTCTCTATATAAAGAACCAGAAACAGGCATTATGAATATCGTCACAGCAGGTCCTGTGAGGGGGCTTTaGCCACAGGACCCTTGTTAT | + |
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Preference number: 5 (lower is better) Translates to: FSLYKEPETGIMNIVTAGPVRGL*PQDPCY Trigger: ATAACAAGGGTCCTGTGGCAAAAGCCCCCTCACAGG...ACCTGCTGTGACGATATTCATAATGCCTGTTTCTGGTTCTTTATATAGAGAAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| CDS-3UTR CAA 90 bp | AGCAGGTTTCTAGTCCTTGGGTACAAAGCAATGTCCTTCCAATACAACCTTTTTTTGTACTTTGTTTCCTaGACCTTTTGGTCTCTGCTC | + |
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Preference number: 5 (lower is better) Translates to: SRFLVLGYKAMSFQYNLFLYFVS*TFWSLL Trigger: GAGCAGAGACCAAAAGGTCAAGGAAACAAAGTACAA...AAAAAGGTTGTATTGGAAGGACATTGCTTTGTACCCAAGGACTAGAAACCTGCT 41% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| CDS CAA 72 bp | ATGGAGTGCTACCTAGGGCTCCTGGTTGCCCAAACATaGCATCTGGTAGAAAGTGGGGCTCTCCGTTGCTCA | + |
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Preference number: 6 (lower is better) Translates to: MECYLGLLVAQT*HLVESGALRCS Trigger: TGAGCAACGGAGAGCCCCACTTTCTACCAGATGCAATGTTTGGGCAACCAGGAGCCCTAGGTAGCACTCCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| CDS CAA 72 bp | ACCTTGACGTTCCTAGGGCTCCTGGTTGCCCAAACATaGCATCTGGTAGAAAGTGGGGCTCTCCGTTGCTCA | + |
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Preference number: 6 (lower is better) Translates to: TLTFLGLLVAQT*HLVESGALRCS Trigger: TGAGCAACGGAGAGCCCCACTTTCTACCAGATGCAATGTTTGGGCAACCAGGAGCCCTAGGAACGTCAAGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165072.2 |
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| CDS CAA 90 bp | TTTCCCACGACCTTGACGTTCCTAGGGCTCCTGGTTGCCCAAACATaGCATCTGGTAGAAAGTGGGGCTCTCCGTTGCTCAGTTGTCCAT | + |
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Preference number: 6 (lower is better) Translates to: FPTTLTFLGLLVAQT*HLVESGALRCSVVH Trigger: ATGGACAACTGAGCAACGGAGAGCCCCACTTTCTACCAGATGCAATGTTTGGGCAACCAGGAGCCCTAGGAACGTCAAGGTCGTGGGAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165072.2 |
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| CDS CCA 72 bp | AGGGGCTGTAGTAACTGGGTAAGTAGGAGTCTGACATaGCAGTATATGCATTATTCGGCCTTGCCTGTGGGC | + |
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Preference number: 6 (lower is better) Translates to: RGCSNWVSRSLT*QYMHYSALPVG Trigger: GCCCACAGGCAAGGCCGAATAATGCATATACTGCCATGTCAGACTCCTACTTACCCAGTTACTACAGCCCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000152796.8 ENSMUST00000165072.2 |
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| CDS CCA 72 bp | CTGACTGTCCATCAATCATGGCTCCACCTAAGGAGCTaGGTGCATAAGCGTAATTGCTACTATATCCAGAGC | + |
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Preference number: 6 (lower is better) Translates to: LTVHQSWLHLRS*VHKRNCYYIQS Trigger: GCTCTGGATATAGTAGCAATTACGCTTATGCACCCAGCTCCTTAGGTGGAGCCATGATTGATGGACAGTCAG 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152796.8 |
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| CDS GCA 72 bp | CAAACATTGCATCTGGTAGAAAGTGGGGCTCTCCGTTaGTCAGTTGTCCATAAGAAGTTAGATAGGGCATGG | + |
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Preference number: 6 (lower is better) Translates to: QTLHLVESGALR*SVVHKKLDRAW Trigger: CCATGCCCTATCTAACTTCTTATGGACAACTGAGCAACGGAGAGCCCCACTTTCTACCAGATGCAATGTTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000152796.8 ENSMUST00000165072.2 |
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