RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for YTHDC2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000034653

Ensembl transcript IDs: ENSMUST00000037763.11, ENSMUST00000201507.2

Found 260 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GAGGAGAGGGGCTGGCACAAGGACTTGGGTAACTGCTGCTGTCTGTaGATTTCACAGATGATTGATCGGACCGGTCATCGGTGCTCCGCT +
Preference number: 1 (lower is better)
Translates to: EERGWHKDLGNCCCL*ISQMIDRTGHRCSA
Trigger: AGCGGAGCACCGATGACCGGTCCGATCAATCATCTGTGAAATCCACAGACAGCAGCAGTTACCCAAGTCCTTGTGCCAGCCCCTCTCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201507.2
3UTR CCA 90 bp GTGAAGGAGATTTTGATCCCTTCCCTGAGGATGGAGGAGAGGGGCTaGCACAAGGACTTGGGTAACTGCTGCTGTCTGTGGATTTCACAG +
Preference number: 1 (lower is better)
Translates to: VKEILIPSLRMEERG*HKDLGNCCCLWISQ
Trigger: CTGTGAAATCCACAGACAGCAGCAGTTACCCAAGTCCTTGTGCCAGCCCCTCTCCTCCATCCTCAGGGAAGGGATCAAAATCTCCTTCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201507.2
3UTR CCA 90 bp GAGGCAGAAACAAACAGGCAGATATCTGTGAGTTTGAGGTCAGCCTaGTCTTACAGAGCTAGTTCCTGGACAGTTGAGGCTAAACAAAGA +
Preference number: 1 (lower is better)
Translates to: EAETNRQISVSLRSA*SYRASSWTVEAKQR
Trigger: TCTTTGTTTAGCCTCAACTGTCCAGGAACTAGCTCTGTAAGACCAGGCTGACCTCAAACTCACAGATATCTGCCTGTTTGTTTCTGCCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
3UTR GCA 90 bp ACCAAAAAGTCAACAATAAGAGTTTGGCATCTCAGGCAGAGGTGGTaGAAGCCTTTAATTCCAGTATTCAGGAGGCAGAAACAAACAGGC +
Preference number: 1 (lower is better)
Translates to: TKKSTIRVWHLRQRW*KPLIPVFRRQKQTG
Trigger: GCCTGTTTGTTTCTGCCTCCTGAATACTGGAATTAAAGGCTTGCACCACCTCTGCCTGAGATGCCAAACTCTTATTGTTGACTTTTTGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
3UTR TCA 90 bp GCCCATCTCTGCTTATCTGTACTTTCTTGTTGTCGTTCCAAGGATTaGGTAAATGGTGTGCAAACTGAAAGGGAAGGCTTTCTTTGCGTA +
Preference number: 1 (lower is better)
Translates to: AHLCLSVLSCCRSKD*VNGVQTEREGFLCV
Trigger: TACGCAAAGAAAGCCTTCCCTTTCAGTTTGCACACCATTTACTCAATCCTTGGAACGACAACAAGAAAGTACAGATAAGCAGAGATGGGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201507.2
3UTR CCA 90 bp ACAACCAAAAAGTCAACAATAAGAGTTTGGCATCTCAGGCAGAGGTaGTGCAAGCCTTTAATTCCAGTATTCAGGAGGCAGAAACAAACA +
Preference number: 1 (lower is better)
Translates to: TTKKSTIRVWHLRQR*CKPLIPVFRRQKQT
Trigger: TGTTTGTTTCTGCCTCCTGAATACTGGAATTAAAGGCTTGCACCACCTCTGCCTGAGATGCCAAACTCTTATTGTTGACTTTTTGGTTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
3UTR CCA 90 bp CCATTAAAGGATAGGCTCACAACCAAAAAGTCAACAATAAGAGTTTaGCATCTCAGGCAGAGGTGGTGCAAGCCTTTAATTCCAGTATTC +
Preference number: 1 (lower is better)
Translates to: PLKDRLTTKKSTIRV*HLRQRWCKPLIPVF
Trigger: GAATACTGGAATTAAAGGCTTGCACCACCTCTGCCTGAGATGCCAAACTCTTATTGTTGACTTTTTGGTTGTGAGCCTATCCTTTAATGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
3UTR TCA 90 bp AGCTTCCGCTCATTACTAGGGGTTGTAGACCAGATACCCTTCTGTTaGGAAATTTCAAGGTTTCTCAGATTGCTACTCTTCATTATGAAG +
Preference number: 1 (lower is better)
Translates to: SFRSLLGVVDQIPFC*EISRFLRLLLFIMK
Trigger: CTTCATAATGAAGAGTAGCAATCTGAGAAACCTTGAAATTTCTCAACAGAAGGGTATCTGGTCTACAACCCCTAGTAATGAGCGGAAGCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201507.2
3UTR CCA 90 bp AAGATGATGATTCTGAAGGAATACTCTATGCCTCAAATCCACTCATaGCATACAACACTTCATCAAGGTTTTCAGAAAATCAGTGCATTC +
Preference number: 1 (lower is better)
Translates to: KMMILKEYSMPQIHS*HTTLHQGFQKISAF
Trigger: GAATGCACTGATTTTCTGAAAACCTTGATGAAGTGTTGTATGCCATGAGTGGATTTGAGGCATAGAGTATTCCTTCAGAATCATCATCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
3UTR TCA 90 bp TTTCTAGAATGGTTCTTAGATGTACTGATATATTTATGCCTTTCCTaGATTAAAAAGTCAACATTAGGGCTGGAGAGATGGCTCAGCCAT +
Preference number: 1 (lower is better)
Translates to: FLEWFLDVLIYLCLS*IKKSTLGLERWLSH
Trigger: ATGGCTGAGCCATCTCTCCAGCCCTAATGTTGACTTTTTAATTCAGGAAAGGCATAAATATATCAGTACATCTAAGAACCATTCTAGAAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
3UTR-3UTR CCA 90 bp GCTCAGCCATTAAAGGATAGGCTCACAACCAAAAAGTCAACAATAAGAGTTTGGGCTGACCCCCAGTCCTaGCTCTTCTCCCTTCCTATC +
Preference number: 2 (lower is better)
Translates to: AQPLKDRLTTKKSTIRVWADPQS*LFSLPI
Trigger: GATAGGAAGGGAGAAGAGCCAGGACTGGGGGTCAGC...CCAAACTCTTATTGTTGACTTTTTGGTTGTGAGCCTATCCTTTAATGGCTGAGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000201507.2
3UTR-3UTR GCA 90 bp ACAAACAGGCAGATATCTGTGAGTTTGAGGTCAGCCTGGTCTTACAGAGCTAGTGACTTGGGTAACTGCTaGTGTCTGTGGATTTCACAG +
Preference number: 2 (lower is better)
Translates to: TNRQISVSLRSAWSYRASDLGNC*CLWISQ
Trigger: CTGTGAAATCCACAGACAGCAGCAGTTACCCAAGTC...ACTAGCTCTGTAAGACCAGGCTGACCTCAAACTCACAGATATCTGCCTGTTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201507.2
3UTR-3UTR CCA 90 bp CAAAGAGGTCATAATAGTAATAGTTATGTGAAGGTTGCTTCATGGGAAGCAAAAATGGAGGAGAGGGGCTaGCACAAGGACTTGGGTAAC +
Preference number: 2 (lower is better)
Translates to: QRGHNSNSYVKVASWEAKMEERG*HKDLGN
Trigger: GTTACCCAAGTCCTTGTGCCAGCCCCTCTCCTCCAT...TTTTGCTTCCCATGAAGCAACCTTCACATAACTATTACTATTATGACCTCTTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201507.2
3UTR-3UTR CCA 90 bp AGGCTTTCTTTGCGTATCCACTCCACTTTAAATACTCCACCTAGTCCAGCTGACGAAAGAAACCCTGTCTaGAAAGAGCAAAAAGAAAAG +
Preference number: 2 (lower is better)
Translates to: RLSLRIHSTLNTPPSPADERNPV*KEQKEK
Trigger: CTTTTCTTTTTGCTCTTTCCAGACAGGGTTTCTTTC...GTCAGCTGGACTAGGTGGAGTATTTAAAGTGGAGTGGATACGCAAAGAAAGCCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201507.2
3UTR-3UTR CCA 90 bp CAAAGAGGTCATAATAGTAATAGTTATGTGAAGGTTGCTTCATGGGAAGCAAAAGCTGGCACAAGGACTTaGGTAACTGCTGCTGTCTGT +
Preference number: 2 (lower is better)
Translates to: QRGHNSNSYVKVASWEAKAGTRT*VTAAVC
Trigger: ACAGACAGCAGCAGTTACCCAAGTCCTTGTGCCAGC...TTTTGCTTCCCATGAAGCAACCTTCACATAACTATTACTATTATGACCTCTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201507.2
3UTR-3UTR CCA 90 bp GGACTAGGAATGAAATTAAGCACTGATCTCATCAAAAGTCAAGAGAAATTACCTAGGCGTTCCCATAACTaGAGCAACTGTTCCCCAACC +
Preference number: 2 (lower is better)
Translates to: GLGMKLSTDLIKSQEKLPRRSHN*SNCSPT
Trigger: GGTTGGGGAACAGTTGCTCCAGTTATGGGAACGCCT...AGGTAATTTCTCTTGACTTTTGATGAGATCAGTGCTTAATTTCATTCCTAGTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201507.2
3UTR-3UTR CCA 90 bp AAACTGAAAGGGAAGGCTTTCTTTGCGTATCCACTCCACTTTAAATACTCCACCCCTCAAATCCACTCATaGCATACAACACTTCATCAA +
Preference number: 2 (lower is better)
Translates to: KLKGKAFFAYPLHFKYSTPQIHS*HTTLHQ
Trigger: TTGATGAAGTGTTGTATGCCATGAGTGGATTTGAGG...GGTGGAGTATTTAAAGTGGAGTGGATACGCAAAGAAAGCCTTCCCTTTCAGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201507.2
3UTR-3UTR GCA 90 bp CAAAGAGGTCATAATAGTAATAGTTATGTGAAGGTTGCTTCATGGGAAGCAAAACTCAGGCAGAGGTGGTaGAAGCCTTTAATTCCAGTA +
Preference number: 2 (lower is better)
Translates to: QRGHNSNSYVKVASWEAKLRQRW*KPLIPV
Trigger: TACTGGAATTAAAGGCTTGCACCACCTCTGCCTGAG...TTTTGCTTCCCATGAAGCAACCTTCACATAACTATTACTATTATGACCTCTTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
3UTR-3UTR CCA 90 bp GGACTAGGAATGAAATTAAGCACTGATCTCATCAAAAGTCAAGAGAAATTACCTCATCTCAGGCAGAGGTaGTGCAAGCCTTTAATTCCA +
Preference number: 2 (lower is better)
Translates to: GLGMKLSTDLIKSQEKLPHLRQR*CKPLIP
Trigger: TGGAATTAAAGGCTTGCACCACCTCTGCCTGAGATG...AGGTAATTTCTCTTGACTTTTGATGAGATCAGTGCTTAATTTCATTCCTAGTCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
3UTR-3UTR GCA 90 bp CAAAGAGGTCATAATAGTAATAGTTATGTGAAGGTTGCTTCATGGGAAGCAAAAATACCAAGTAAACCATaGTGCTCTCCCAAAACGCTC +
Preference number: 2 (lower is better)
Translates to: QRGHNSNSYVKVASWEAKIPSKP*CSPKTL
Trigger: GAGCGTTTTGGGAGAGCAGCATGGTTTACTTGGTAT...TTTTGCTTCCCATGAAGCAACCTTCACATAACTATTACTATTATGACCTCTTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201507.2
3UTR-3UTR CCA 90 bp GCTCAGCCATTAAAGGATAGGCTCACAACCAAAAAGTCAACAATAAGAGTTTGGGAAAGAAACCCTGTCTaGAAAGAGCAAAAAGAAAAG +
Preference number: 2 (lower is better)
Translates to: AQPLKDRLTTKKSTIRVWERNPV*KEQKEK
Trigger: CTTTTCTTTTTGCTCTTTCCAGACAGGGTTTCTTTC...CCAAACTCTTATTGTTGACTTTTTGGTTGTGAGCCTATCCTTTAATGGCTGAGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
3UTR-3UTR TCA 90 bp AGAGAAAGTAGAAGAGTTCTCAAGACTTCATGCCAATCCATGATTTTCTATATCCAGATACCCTTCTGTTaGGAAATTTCAAGGTTTCTC +
Preference number: 2 (lower is better)
Translates to: RESRRVLKTSCQSMIFYIQIPFC*EISRFL
Trigger: GAGAAACCTTGAAATTTCTCAACAGAAGGGTATCTG...GATATAGAAAATCATGGATTGGCATGAAGTCTTGAGAACTCTTCTACTTTCTCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201507.2
3UTR-3UTR CCA 90 bp GGACTAGGAATGAAATTAAGCACTGATCTCATCAAAAGTCAAGAGAAATTACCTCCTCAAATCCACTCATaGCATACAACACTTCATCAA +
Preference number: 2 (lower is better)
Translates to: GLGMKLSTDLIKSQEKLPPQIHS*HTTLHQ
Trigger: TTGATGAAGTGTTGTATGCCATGAGTGGATTTGAGG...AGGTAATTTCTCTTGACTTTTGATGAGATCAGTGCTTAATTTCATTCCTAGTCC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
3UTR-3UTR CCA 90 bp TGCCTCAAATCCACTCATGGCATACAACACTTCATCAAGGTTTTCAGAAAATCACCGACTTTTCTAGAATaGTTCTTAGATGTACTGATA +
Preference number: 2 (lower is better)
Translates to: CLKSTHGIQHFIKVFRKSPTFLE*FLDVLI
Trigger: TATCAGTACATCTAAGAACCATTCTAGAAAAGTCGG...TGATTTTCTGAAAACCTTGATGAAGTGTTGTATGCCATGAGTGGATTTGAGGCA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
3UTR-3UTR TCA 90 bp CAAAGAGGTCATAATAGTAATAGTTATGTGAAGGTTGCTTCATGGGAAGCAAAAATAGTAATAGTTATGTaGAGGTTGCTTCATGGGAAG +
Preference number: 2 (lower is better)
Translates to: QRGHNSNSYVKVASWEAKIVIVM*RLLHGK
Trigger: CTTCCCATGAAGCAACCTTCACATAACTATTACTAT...TTTTGCTTCCCATGAAGCAACCTTCACATAACTATTACTATTATGACCTCTTTG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
3UTR-3UTR CCA 90 bp AGAGAAAGTAGAAGAGTTCTCAAGACTTCATGCCAATCCATGATTTTCTATATCCCGACTTTTCTAGAATaGTTCTTAGATGTACTGATA +
Preference number: 2 (lower is better)
Translates to: RESRRVLKTSCQSMIFYIPTFLE*FLDVLI
Trigger: TATCAGTACATCTAAGAACCATTCTAGAAAAGTCGG...GATATAGAAAATCATGGATTGGCATGAAGTCTTGAGAACTCTTCTACTTTCTCT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
3UTR GCA 72 bp GAGGAGAGGGGCTGGCACAAGGACTTGGGTAACTGCTaGTGTCTGTGGATTTCACAGATGATTGATCGGACC +
Preference number: 3 (lower is better)
Translates to: EERGWHKDLGNC*CLWISQMIDRT
Trigger: GGTCCGATCAATCATCTGTGAAATCCACAGACAGCAGCAGTTACCCAAGTCCTTGTGCCAGCCCCTCTCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201507.2
3UTR GCA 72 bp ATGGAGGAGAGGGGCTGGCACAAGGACTTGGGTAACTaGTGCTGTCTGTGGATTTCACAGATGATTGATCGG +
Preference number: 3 (lower is better)
Translates to: MEERGWHKDLGN*CCLWISQMIDR
Trigger: CCGATCAATCATCTGTGAAATCCACAGACAGCAGCAGTTACCCAAGTCCTTGTGCCAGCCCCTCTCCTCCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201507.2
3UTR CCA 72 bp ACAAACAGGCAGATATCTGTGAGTTTGAGGTCAGCCTaGTCTTACAGAGCTAGTTCCTGGACAGTTGAGGCT +
Preference number: 3 (lower is better)
Translates to: TNRQISVSLRSA*SYRASSWTVEA
Trigger: AGCCTCAACTGTCCAGGAACTAGCTCTGTAAGACCAGGCTGACCTCAAACTCACAGATATCTGCCTGTTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
3UTR-3UTR CAA 90 bp AGGGCTGGAGAGATGGCTCAGCCATTAAAGGATAGGCTCACAACCAAAAAGTCACAGATATCTGTGAGTTaGAGGTCAGCCTGGTCTTAC +
Preference number: 3 (lower is better)
Translates to: RAGEMAQPLKDRLTTKKSQISVS*RSAWSY
Trigger: GTAAGACCAGGCTGACCTCAAACTCACAGATATCTG...TGACTTTTTGGTTGTGAGCCTATCCTTTAATGGCTGAGCCATCTCTCCAGCCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
3UTR-3UTR CAA 90 bp AGGGCTGGAGAGATGGCTCAGCCATTAAAGGATAGGCTCACAACCAAAAAGTCATTGGTGAAGGAGATTTaGATCCCTTCCCTGAGGATG +
Preference number: 3 (lower is better)
Translates to: RAGEMAQPLKDRLTTKKSLVKEI*IPSLRM
Trigger: CATCCTCAGGGAAGGGATCAAAATCTCCTTCACCAA...TGACTTTTTGGTTGTGAGCCTATCCTTTAATGGCTGAGCCATCTCTCCAGCCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201507.2
3UTR-3UTR CAA 90 bp ACAAACAGGCAGATATCTGTGAGTTTGAGGTCAGCCTGGTCTTACAGAGCTAGTCAGATATCTGTGAGTTaGAGGTCAGCCTGGTCTTAC +
Preference number: 3 (lower is better)
Translates to: TNRQISVSLRSAWSYRASQISVS*RSAWSY
Trigger: GTAAGACCAGGCTGACCTCAAACTCACAGATATCTG...ACTAGCTCTGTAAGACCAGGCTGACCTCAAACTCACAGATATCTGCCTGTTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
3UTR GCA 72 bp GTCCAGATCCTTGAACAGAAAATACCAAGTAAACCATaGTGCTCTCCCAAAACGCTCGATTTAGCTTCCGCT +
Preference number: 3 (lower is better)
Translates to: VQILEQKIPSKP*CSPKTLDLASA
Trigger: AGCGGAAGCTAAATCGAGCGTTTTGGGAGAGCAGCATGGTTTACTTGGTATTTTCTGTTCAAGGATCTGGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201507.2
3UTR CCA 72 bp AGTTTGAGGTCAGCCTGGTCTTACAGAGCTAGTTCCTaGACAGTTGAGGCTAAACAAAGAAAGAAACCCTGT +
Preference number: 3 (lower is better)
Translates to: SLRSAWSYRASS*TVEAKQRKKPC
Trigger: ACAGGGTTTCTTTCTTTGTTTAGCCTCAACTGTCCAGGAACTAGCTCTGTAAGACCAGGCTGACCTCAAACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
3UTR CCA 72 bp AAGTCAACAATAAGAGTTTGGCATCTCAGGCAGAGGTaGTGCAAGCCTTTAATTCCAGTATTCAGGAGGCAG +
Preference number: 3 (lower is better)
Translates to: KSTIRVWHLRQR*CKPLIPVFRRQ
Trigger: CTGCCTCCTGAATACTGGAATTAAAGGCTTGCACCACCTCTGCCTGAGATGCCAAACTCTTATTGTTGACTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
3UTR GCA 72 bp CAGATCCTTGAACAGAAAATACCAAGTAAACCATGCTaGTCTCCCAAAACGCTCGATTTAGCTTCCGCTCAT +
Preference number: 3 (lower is better)
Translates to: QILEQKIPSKPC*SPKTLDLASAH
Trigger: ATGAGCGGAAGCTAAATCGAGCGTTTTGGGAGAGCAGCATGGTTTACTTGGTATTTTCTGTTCAAGGATCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201507.2
3UTR-3UTR CAA 90 bp GCTCAGCCATTAAAGGATAGGCTCACAACCAAAAAGTCAACAATAAGAGTTTGGGTCAACAATAAGAGTTaGGCATCTCAGGCAGAGGTG +
Preference number: 3 (lower is better)
Translates to: AQPLKDRLTTKKSTIRVWVNNKS*ASQAEV
Trigger: CACCTCTGCCTGAGATGCCAAACTCTTATTGTTGAC...CCAAACTCTTATTGTTGACTTTTTGGTTGTGAGCCTATCCTTTAATGGCTGAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
3UTR GCA 72 bp GAGCTCAGTAGCAAAGATATGTCTGATGTTCTGCCCTaGACTTCTACTTTATCTTCCAAGAGTCTCAAAGAA +
Preference number: 3 (lower is better)
Translates to: ELSSKDMSDVLP*TSTLSSKSLKE
Trigger: TTCTTTGAGACTCTTGGAAGATAAAGTAGAAGTGCAGGGCAGAACATCAGACATATCTTTGCTACTGAGCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
3UTR-3UTR CAA 90 bp TGCCTCAAATCCACTCATGGCATACAACACTTCATCAAGGTTTTCAGAAAATCACTAGTTCCTGGACAGTaGAGGCTAAACAAAGAAAGA +
Preference number: 3 (lower is better)
Translates to: CLKSTHGIQHFIKVFRKSLVPGQ*RLNKER
Trigger: TCTTTCTTTGTTTAGCCTCAACTGTCCAGGAACTAG...TGATTTTCTGAAAACCTTGATGAAGTGTTGTATGCCATGAGTGGATTTGAGGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
3UTR TCA 72 bp TCATTACTAGGGGTTGTAGACCAGATACCCTTCTGTTaGGAAATTTCAAGGTTTCTCAGATTGCTACTCTTC +
Preference number: 3 (lower is better)
Translates to: SLLGVVDQIPFC*EISRFLRLLLF
Trigger: GAAGAGTAGCAATCTGAGAAACCTTGAAATTTCTCAACAGAAGGGTATCTGGTCTACAACCCCTAGTAATGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201507.2
3UTR TCA 72 bp TGCTTATCTGTACTTTCTTGTTGTCGTTCCAAGGATTaGGTAAATGGTGTGCAAACTGAAAGGGAAGGCTTT +
Preference number: 3 (lower is better)
Translates to: CLSVLSCCRSKD*VNGVQTEREGF
Trigger: AAAGCCTTCCCTTTCAGTTTGCACACCATTTACTCAATCCTTGGAACGACAACAAGAAAGTACAGATAAGCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201507.2
3UTR-3UTR CAA 90 bp CAAAGAGGTCATAATAGTAATAGTTATGTGAAGGTTGCTTCATGGGAAGCAAAACTAGTTCCTGGACAGTaGAGGCTAAACAAAGAAAGA +
Preference number: 3 (lower is better)
Translates to: QRGHNSNSYVKVASWEAKLVPGQ*RLNKER
Trigger: TCTTTCTTTGTTTAGCCTCAACTGTCCAGGAACTAG...TTTTGCTTCCCATGAAGCAACCTTCACATAACTATTACTATTATGACCTCTTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
3UTR CCA 72 bp ATTCTGAAGGAATACTCTATGCCTCAAATCCACTCATaGCATACAACACTTCATCAAGGTTTTCAGAAAATC +
Preference number: 3 (lower is better)
Translates to: ILKEYSMPQIHS*HTTLHQGFQKI
Trigger: GATTTTCTGAAAACCTTGATGAAGTGTTGTATGCCATGAGTGGATTTGAGGCATAGAGTATTCCTTCAGAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
3UTR-3UTR CAA 90 bp AGAGAAAGTAGAAGAGTTCTCAAGACTTCATGCCAATCCATGATTTTCTATATCCCAGATACCCTTCTGTaGAGAAATTTCAAGGTTTCT +
Preference number: 3 (lower is better)
Translates to: RESRRVLKTSCQSMIFYIPDTLL*RNFKVS
Trigger: AGAAACCTTGAAATTTCTCAACAGAAGGGTATCTGG...GATATAGAAAATCATGGATTGGCATGAAGTCTTGAGAACTCTTCTACTTTCTCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201507.2
3UTR-3UTR CAA 90 bp GGACTAGGAATGAAATTAAGCACTGATCTCATCAAAAGTCAAGAGAAATTACCTGAAATGTCCAGATCCTaGAACAGAAAATACCAAGTA +
Preference number: 3 (lower is better)
Translates to: GLGMKLSTDLIKSQEKLPEMSRS*NRKYQV
Trigger: TACTTGGTATTTTCTGTTCAAGGATCTGGACATTTC...AGGTAATTTCTCTTGACTTTTGATGAGATCAGTGCTTAATTTCATTCCTAGTCC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201507.2
CDS-3UTR GCA 90 bp ATTCAGGAGGCAGAAACAAACAGGCAGATATCTGTGAGTTTGAGGTCAGCCTGGCCAATCTGTGGGCAATaGCTGAATCGCTGCAGCCTG +
Preference number: 4 (lower is better)
Translates to: IQEAETNRQISVSLRSAWPICGQ*LNRCSL
Trigger: CAGGCTGCAGCGATTCAGGCATTGCCCACAGATTGG...CCAGGCTGACCTCAAACTCACAGATATCTGCCTGTTTGTTTCTGCCTCCTGAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR CCA 90 bp AGAGAAAGTAGAAGAGTTCTCAAGACTTCATGCCAATCCATGATTTTCTATATCAGGACCACACGAAGCTaGGCCGCCGCCGCCACCGCC +
Preference number: 4 (lower is better)
Translates to: RESRRVLKTSCQSMIFYIRTTRS*AAAATA
Trigger: GGCGGTGGCGGCGGCGGCCCAGCTTCGTGTGGTCCT...GATATAGAAAATCATGGATTGGCATGAAGTCTTGAGAACTCTTCTACTTTCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR TCA 90 bp ACAAACAGGCAGATATCTGTGAGTTTGAGGTCAGCCTGGTCTTACAGAGCTAGTGAGGAATGCCATTGTTaGGTCGCCCGCTTGTCTTGC +
Preference number: 4 (lower is better)
Translates to: TNRQISVSLRSAWSYRASEECHC*VARLSC
Trigger: GCAAGACAAGCGGGCGACTCAACAATGGCATTCCTC...ACTAGCTCTGTAAGACCAGGCTGACCTCAAACTCACAGATATCTGCCTGTTTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR TCA 90 bp ATTCAGGAGGCAGAAACAAACAGGCAGATATCTGTGAGTTTGAGGTCAGCCTGGACAGCTCTCTGCCTCTaGGACTCAGGCTTGAAGGTA +
Preference number: 4 (lower is better)
Translates to: IQEAETNRQISVSLRSAWTALCL*DSGLKV
Trigger: TACCTTCAAGCCTGAGTCTCAGAGGCAGAGAGCTGT...CCAGGCTGACCTCAAACTCACAGATATCTGCCTGTTTGTTTCTGCCTCCTGAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
3UTR CAA 72 bp CAGGAGGCAGAAACAAACAGGCAGATATCTGTGAGTTaGAGGTCAGCCTGGTCTTACAGAGCTAGTTCCTGG +
Preference number: 4 (lower is better)
Translates to: QEAETNRQISVS*RSAWSYRASSW
Trigger: CCAGGAACTAGCTCTGTAAGACCAGGCTGACCTCAAACTCACAGATATCTGCCTGTTTGTTTCTGCCTCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR TCA 90 bp GCTCAGCCATTAAAGGATAGGCTCACAACCAAAAAGTCAACAATAAGAGTTTGGCGATACGAATGTCTTTaGGGCCCTTGGCCCGGCCAC +
Preference number: 4 (lower is better)
Translates to: AQPLKDRLTTKKSTIRVWRYECL*GPWPGH
Trigger: GTGGCCGGGCCAAGGGCCTCAAAGACATTCGTATCG...CCAAACTCTTATTGTTGACTTTTTGGTTGTGAGCCTATCCTTTAATGGCTGAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR TCA 90 bp AGGGCTGGAGAGATGGCTCAGCCATTAAAGGATAGGCTCACAACCAAAAAGTCACCTGATGCTCTAAGCTaGCCAAGCAACTGTGTTCTC +
Preference number: 4 (lower is better)
Translates to: RAGEMAQPLKDRLTTKKSPDALS*PSNCVL
Trigger: GAGAACACAGTTGCTTGGTCAGCTTAGAGCATCAGG...TGACTTTTTGGTTGTGAGCCTATCCTTTAATGGCTGAGCCATCTCTCCAGCCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR CCA 90 bp ATTCAGGAGGCAGAAACAAACAGGCAGATATCTGTGAGTTTGAGGTCAGCCTGGCTCAGAAGTGCCATGTaGTCACTGAAAGTCCCTGCA +
Preference number: 4 (lower is better)
Translates to: IQEAETNRQISVSLRSAWLRSAM*SLKVPA
Trigger: TGCAGGGACTTTCAGTGACCACATGGCACTTCTGAG...CCAGGCTGACCTCAAACTCACAGATATCTGCCTGTTTGTTTCTGCCTCCTGAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR CCA 90 bp ATTCAGGAGGCAGAAACAAACAGGCAGATATCTGTGAGTTTGAGGTCAGCCTGGCTGCAGCCTGACCATTaGCGGGAGGAATCTTTTTGT +
Preference number: 4 (lower is better)
Translates to: IQEAETNRQISVSLRSAWLQPDH*REESFC
Trigger: ACAAAAAGATTCCTCCCGCCAATGGTCAGGCTGCAG...CCAGGCTGACCTCAAACTCACAGATATCTGCCTGTTTGTTTCTGCCTCCTGAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR CCA 90 bp ACAAACAGGCAGATATCTGTGAGTTTGAGGTCAGCCTGGTCTTACAGAGCTAGTACTTGCCAGTCTTGCTaGTCCACAGAACACCAGGAC +
Preference number: 4 (lower is better)
Translates to: TNRQISVSLRSAWSYRASTCQSC*STEHQD
Trigger: GTCCTGGTGTTCTGTGGACCAGCAAGACTGGCAAGT...ACTAGCTCTGTAAGACCAGGCTGACCTCAAACTCACAGATATCTGCCTGTTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR TCA 90 bp ACCAAAAAGTCAACAATAAGAGTTTGGCATCTCAGGCAGAGGTGGTGCAAGCCTCTGAGTACCACTCTGTaGGGGTGGTCTGTTGTTTCT +
Preference number: 4 (lower is better)
Translates to: TKKSTIRVWHLRQRWCKPLSTTL*GWSVVS
Trigger: AGAAACAACAGACCACCCTCACAGAGTGGTACTCAG...AGGCTTGCACCACCTCTGCCTGAGATGCCAAACTCTTATTGTTGACTTTTTGGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR TCA 90 bp ACAACACTTCATCAAGGTTTTCAGAAAATCAGTGCATTCTGTAGCTACAACAGGATAGCTGCCCGTTTCTaGGAGGCCTGGGTAGGCAGG +
Preference number: 4 (lower is better)
Translates to: TTLHQGFQKISAFCSYNRIAARF*EAWVGR
Trigger: CCTGCCTACCCAGGCCTCTCAGAAACGGGCAGCTAT...CCTGTTGTAGCTACAGAATGCACTGATTTTCTGAAAACCTTGATGAAGTGTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR TCA 90 bp ATTCAGGAGGCAGAAACAAACAGGCAGATATCTGTGAGTTTGAGGTCAGCCTGGAAGGATGAAGGTTCCTaGAGAGCGTTACTTGCCAGT +
Preference number: 4 (lower is better)
Translates to: IQEAETNRQISVSLRSAWKDEGS*RALLAS
Trigger: ACTGGCAAGTAACGCTCTTCAGGAACCTTCATCCTT...CCAGGCTGACCTCAAACTCACAGATATCTGCCTGTTTGTTTCTGCCTCCTGAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR TCA 90 bp ATTCAGGAGGCAGAAACAAACAGGCAGATATCTGTGAGTTTGAGGTCAGCCTGGATCCGCTCTAAAGGATaGAGGTTCCTGAAGAGCGTT +
Preference number: 4 (lower is better)
Translates to: IQEAETNRQISVSLRSAWIRSKG*RFLKSV
Trigger: AACGCTCTTCAGGAACCTTCATCCTTTAGAGCGGAT...CCAGGCTGACCTCAAACTCACAGATATCTGCCTGTTTGTTTCTGCCTCCTGAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR TCA 90 bp AGGGCTGGAGAGATGGCTCAGCCATTAAAGGATAGGCTCACAACCAAAAAGTCAATCCGCTCTAAAGGATaGAGGTTCCTGAAGAGCGTT +
Preference number: 4 (lower is better)
Translates to: RAGEMAQPLKDRLTTKKSIRSKG*RFLKSV
Trigger: AACGCTCTTCAGGAACCTTCATCCTTTAGAGCGGAT...TGACTTTTTGGTTGTGAGCCTATCCTTTAATGGCTGAGCCATCTCTCCAGCCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR TCA 90 bp AGGGCTGGAGAGATGGCTCAGCCATTAAAGGATAGGCTCACAACCAAAAAGTCAGTAGCTTCATCGACTTaGGACCAAGGTTTAGATGGC +
Preference number: 4 (lower is better)
Translates to: RAGEMAQPLKDRLTTKKSVASST*DQGLDG
Trigger: GCCATCTAAACCTTGGTCTCAAGTCGATGAAGCTAC...TGACTTTTTGGTTGTGAGCCTATCCTTTAATGGCTGAGCCATCTCTCCAGCCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR GCA 90 bp AGGCTTTCTTTGCGTATCCACTCCACTTTAAATACTCCACCTAGTCCAGCTGACCCACCCATCACTTCGTaGTTTCTGCCATGCCTGAAA +
Preference number: 4 (lower is better)
Translates to: RLSLRIHSTLNTPPSPADPPITS*FLPCLK
Trigger: TTTCAGGCATGGCAGAAAGCACGAAGTGATGGGTGG...GTCAGCTGGACTAGGTGGAGTATTTAAAGTGGAGTGGATACGCAAAGAAAGCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201507.2
CDS-3UTR GCA 90 bp ACCAAAAAGTCAACAATAAGAGTTTGGCATCTCAGGCAGAGGTGGTGCAAGCCTGTTACTTGCCAGTCTTaGTGGTCCACAGAACACCAG +
Preference number: 4 (lower is better)
Translates to: TKKSTIRVWHLRQRWCKPVTCQS*WSTEHQ
Trigger: CTGGTGTTCTGTGGACCAGCAAGACTGGCAAGTAAC...AGGCTTGCACCACCTCTGCCTGAGATGCCAAACTCTTATTGTTGACTTTTTGGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR CCA 90 bp ACAAACAGGCAGATATCTGTGAGTTTGAGGTCAGCCTGGTCTTACAGAGCTAGTCTGCAGCCTGACCATTaGCGGGAGGAATCTTTTTGT +
Preference number: 4 (lower is better)
Translates to: TNRQISVSLRSAWSYRASLQPDH*REESFC
Trigger: ACAAAAAGATTCCTCCCGCCAATGGTCAGGCTGCAG...ACTAGCTCTGTAAGACCAGGCTGACCTCAAACTCACAGATATCTGCCTGTTTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR TCA 90 bp ATTCAGGAGGCAGAAACAAACAGGCAGATATCTGTGAGTTTGAGGTCAGCCTGGCAGGTCATCATTGCATaGGCTGTTTCTGATCCATCT +
Preference number: 4 (lower is better)
Translates to: IQEAETNRQISVSLRSAWQVIIA*AVSDPS
Trigger: AGATGGATCAGAAACAGCTCATGCAATGATGACCTG...CCAGGCTGACCTCAAACTCACAGATATCTGCCTGTTTGTTTCTGCCTCCTGAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR TCA 90 bp ACAAACAGGCAGATATCTGTGAGTTTGAGGTCAGCCTGGTCTTACAGAGCTAGTAGGCATCCATCTCCTTaGTTAACCATGGTTCAAGGC +
Preference number: 4 (lower is better)
Translates to: TNRQISVSLRSAWSYRASRHPSP*LTMVQG
Trigger: GCCTTGAACCATGGTTAATCAAGGAGATGGATGCCT...ACTAGCTCTGTAAGACCAGGCTGACCTCAAACTCACAGATATCTGCCTGTTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR GCA 90 bp AGGGCTGGAGAGATGGCTCAGCCATTAAAGGATAGGCTCACAACCAAAAAGTCAACACTTCAAAACCACTaGACACAGGACCATTTTCCC +
Preference number: 4 (lower is better)
Translates to: RAGEMAQPLKDRLTTKKSTLQNH*TQDHFP
Trigger: GGGAAAATGGTCCTGTGTGCAGTGGTTTTGAAGTGT...TGACTTTTTGGTTGTGAGCCTATCCTTTAATGGCTGAGCCATCTCTCCAGCCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR GCA 90 bp AGGGCTGGAGAGATGGCTCAGCCATTAAAGGATAGGCTCACAACCAAAAAGTCAATACCAAGTAAACCATaGTGCTCTCCCAAAACGCTC +
Preference number: 4 (lower is better)
Translates to: RAGEMAQPLKDRLTTKKSIPSKP*CSPKTL
Trigger: GAGCGTTTTGGGAGAGCAGCATGGTTTACTTGGTAT...TGACTTTTTGGTTGTGAGCCTATCCTTTAATGGCTGAGCCATCTCTCCAGCCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR TCA 90 bp ACAAACAGGCAGATATCTGTGAGTTTGAGGTCAGCCTGGTCTTACAGAGCTAGTTCTTTTTCTGTCAGCTaGCTGAAGACAGCATCACCT +
Preference number: 4 (lower is better)
Translates to: TNRQISVSLRSAWSYRASSFSVS*LKTASP
Trigger: AGGTGATGCTGTCTTCAGTCAGCTGACAGAAAAAGA...ACTAGCTCTGTAAGACCAGGCTGACCTCAAACTCACAGATATCTGCCTGTTTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR TCA 90 bp GGACTAGGAATGAAATTAAGCACTGATCTCATCAAAAGTCAAGAGAAATTACCTATAGCTGCCCGTTTCTaGGAGGCCTGGGTAGGCAGG +
Preference number: 4 (lower is better)
Translates to: GLGMKLSTDLIKSQEKLPIAARF*EAWVGR
Trigger: CCTGCCTACCCAGGCCTCTCAGAAACGGGCAGCTAT...AGGTAATTTCTCTTGACTTTTGATGAGATCAGTGCTTAATTTCATTCCTAGTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR TCA 90 bp GCTCAGCCATTAAAGGATAGGCTCACAACCAAAAAGTCAACAATAAGAGTTTGGGCTTTCTGCCATGCCTaGAATGCTCTCAGAAGTGCC +
Preference number: 4 (lower is better)
Translates to: AQPLKDRLTTKKSTIRVWAFCHA*NALRSA
Trigger: GGCACTTCTGAGAGCATTTCAGGCATGGCAGAAAGC...CCAAACTCTTATTGTTGACTTTTTGGTTGTGAGCCTATCCTTTAATGGCTGAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR TCA 90 bp AGGGCTGGAGAGATGGCTCAGCCATTAAAGGATAGGCTCACAACCAAAAAGTCAATTGGATCTCCAAGATaGAGCCAAAGGAAGTTCTTC +
Preference number: 4 (lower is better)
Translates to: RAGEMAQPLKDRLTTKKSIGSPR*SQRKFF
Trigger: GAAGAACTTCCTTTGGCTTCATCTTGGAGATCCAAT...TGACTTTTTGGTTGTGAGCCTATCCTTTAATGGCTGAGCCATCTCTCCAGCCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR TCA 90 bp AGGGCTGGAGAGATGGCTCAGCCATTAAAGGATAGGCTCACAACCAAAAAGTCATGTCGTTCCAAGGATTaGGTAAATGGTGTGCAAACT +
Preference number: 4 (lower is better)
Translates to: RAGEMAQPLKDRLTTKKSCRSKD*VNGVQT
Trigger: AGTTTGCACACCATTTACTCAATCCTTGGAACGACA...TGACTTTTTGGTTGTGAGCCTATCCTTTAATGGCTGAGCCATCTCTCCAGCCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR GCA 90 bp ACAAACAGGCAGATATCTGTGAGTTTGAGGTCAGCCTGGTCTTACAGAGCTAGTGCCTTTGCGCTGTATTaGACTAGCTTTGGAAATCCA +
Preference number: 4 (lower is better)
Translates to: TNRQISVSLRSAWSYRASAFALY*TSFGNP
Trigger: TGGATTTCCAAAGCTAGTGCAATACAGCGCAAAGGC...ACTAGCTCTGTAAGACCAGGCTGACCTCAAACTCACAGATATCTGCCTGTTTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR GCA 90 bp AAACTGAAAGGGAAGGCTTTCTTTGCGTATCCACTCCACTTTAAATACTCCACCCTGCCATGCCTGAAATaGTCTCAGAAGTGCCATGTG +
Preference number: 4 (lower is better)
Translates to: KLKGKAFFAYPLHFKYSTLPCLK*SQKCHV
Trigger: CACATGGCACTTCTGAGAGCATTTCAGGCATGGCAG...GGTGGAGTATTTAAAGTGGAGTGGATACGCAAAGAAAGCCTTCCCTTTCAGTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201507.2
CDS-3UTR GCA 90 bp ACAAACAGGCAGATATCTGTGAGTTTGAGGTCAGCCTGGTCTTACAGAGCTAGTCCATCTCACTGTCACTaGTGTCATTGGGAATACCAT +
Preference number: 4 (lower is better)
Translates to: TNRQISVSLRSAWSYRASPSHCH*CHWEYH
Trigger: ATGGTATTCCCAATGACAGCAGTGACAGTGAGATGG...ACTAGCTCTGTAAGACCAGGCTGACCTCAAACTCACAGATATCTGCCTGTTTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR CCA 90 bp AGGGCTGGAGAGATGGCTCAGCCATTAAAGGATAGGCTCACAACCAAAAAGTCAAGGCTCTTTCCGTACTaGTCAAAGAAGAAGGGAATT +
Preference number: 4 (lower is better)
Translates to: RAGEMAQPLKDRLTTKKSRLFPY*SKKKGI
Trigger: AATTCCCTTCTTCTTTGACCAGTACGGAAAGAGCCT...TGACTTTTTGGTTGTGAGCCTATCCTTTAATGGCTGAGCCATCTCTCCAGCCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR CCA 90 bp AAGGTTTTCAGAAAATCAGTGCATTCTGTAGCTACAACAGGCATAACGCTCTTCAGGCGTTCCCATAACTaGAGCAACTGTTCCCCAACC +
Preference number: 4 (lower is better)
Translates to: KVFRKSVHSVATTGITLFRRSHN*SNCSPT
Trigger: GGTTGGGGAACAGTTGCTCCAGTTATGGGAACGCCT...GAAGAGCGTTATGCCTGTTGTAGCTACAGAATGCACTGATTTTCTGAAAACCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR TCA 90 bp GGACTAGGAATGAAATTAAGCACTGATCTCATCAAAAGTCAAGAGAAATTACCTGCTCCAGAGCGATGTTaGCGGCGATCTTCACCTCCT +
Preference number: 4 (lower is better)
Translates to: GLGMKLSTDLIKSQEKLPAPERC*RRSSPP
Trigger: AGGAGGTGAAGATCGCCGTCAACATCGCTCTGGAGC...AGGTAATTTCTCTTGACTTTTGATGAGATCAGTGCTTAATTTCATTCCTAGTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR TCA 90 bp ACAAACAGGCAGATATCTGTGAGTTTGAGGTCAGCCTGGTCTTACAGAGCTAGTTGCATGAGCTGTTTCTaGTCCATCTTTCTTCTTCAC +
Preference number: 4 (lower is better)
Translates to: TNRQISVSLRSAWSYRASCMSCF*SIFLLH
Trigger: GTGAAGAAGAAAGATGGATCAGAAACAGCTCATGCA...ACTAGCTCTGTAAGACCAGGCTGACCTCAAACTCACAGATATCTGCCTGTTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR TCA 90 bp AGGGCTGGAGAGATGGCTCAGCCATTAAAGGATAGGCTCACAACCAAAAAGTCATCATTCCCATTTGTCTaGACCAAGGAACTTTCATCT +
Preference number: 4 (lower is better)
Translates to: RAGEMAQPLKDRLTTKKSSFPFV*TKELSS
Trigger: AGATGAAAGTTCCTTGGTTCAGACAAATGGGAATGA...TGACTTTTTGGTTGTGAGCCTATCCTTTAATGGCTGAGCCATCTCTCCAGCCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR TCA 90 bp GCTCAGCCATTAAAGGATAGGCTCACAACCAAAAAGTCAACAATAAGAGTTTGGCAAAGGAAGTTCTTCTaGAGACATGGGTCTTGGCCG +
Preference number: 4 (lower is better)
Translates to: AQPLKDRLTTKKSTIRVWQRKFF*RHGSWP
Trigger: CGGCCAAGACCCATGTCTTCAGAAGAACTTCCTTTG...CCAAACTCTTATTGTTGACTTTTTGGTTGTGAGCCTATCCTTTAATGGCTGAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR TCA 90 bp ACCAAAAAGTCAACAATAAGAGTTTGGCATCTCAGGCAGAGGTGGTGCAAGCCTATTGGATCTCCAAGATaGAGCCAAAGGAAGTTCTTC +
Preference number: 4 (lower is better)
Translates to: TKKSTIRVWHLRQRWCKPIGSPR*SQRKFF
Trigger: GAAGAACTTCCTTTGGCTTCATCTTGGAGATCCAAT...AGGCTTGCACCACCTCTGCCTGAGATGCCAAACTCTTATTGTTGACTTTTTGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR TCA 90 bp AGGCTTTCTTTGCGTATCCACTCCACTTTAAATACTCCACCTAGTCCAGCTGACCTATCTTTGTACTTCTaGGGTGGATGTAAGGCTTTC +
Preference number: 4 (lower is better)
Translates to: RLSLRIHSTLNTPPSPADLSLYF*GGCKAF
Trigger: GAAAGCCTTACATCCACCTCAGAAGTACAAAGATAG...GTCAGCTGGACTAGGTGGAGTATTTAAAGTGGAGTGGATACGCAAAGAAAGCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201507.2
CDS-3UTR GCA 90 bp AGGGCTGGAGAGATGGCTCAGCCATTAAAGGATAGGCTCACAACCAAAAAGTCAAGTCAGATCTTCCCATaGATCCATTGCATCTATTGT +
Preference number: 4 (lower is better)
Translates to: RAGEMAQPLKDRLTTKKSSQIFP*IHCIYC
Trigger: ACAATAGATGCAATGGATGCATGGGAAGATCTGACT...TGACTTTTTGGTTGTGAGCCTATCCTTTAATGGCTGAGCCATCTCTCCAGCCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR GCA 90 bp TGCCTCAAATCCACTCATGGCATACAACACTTCATCAAGGTTTTCAGAAAATCACCTACAAAGCATAGCTaGCCGTTTCTGAGAGGCCTG +
Preference number: 4 (lower is better)
Translates to: CLKSTHGIQHFIKVFRKSPTKHS*PFLRGL
Trigger: CAGGCCTCTCAGAAACGGGCAGCTATGCTTTGTAGG...TGATTTTCTGAAAACCTTGATGAAGTGTTGTATGCCATGAGTGGATTTGAGGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR GCA 90 bp AAGGTTTTCAGAAAATCAGTGCATTCTGTAGCTACAACAGGCATAACGCTCTTCCTGCCATGCCTGAAATaGTCTCAGAAGTGCCATGTG +
Preference number: 4 (lower is better)
Translates to: KVFRKSVHSVATTGITLFLPCLK*SQKCHV
Trigger: CACATGGCACTTCTGAGAGCATTTCAGGCATGGCAG...GAAGAGCGTTATGCCTGTTGTAGCTACAGAATGCACTGATTTTCTGAAAACCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR CCA 90 bp ATTCAGGAGGCAGAAACAAACAGGCAGATATCTGTGAGTTTGAGGTCAGCCTGGTCATCCACAATAACATaGGTCACAGTTGACAATGTG +
Preference number: 4 (lower is better)
Translates to: IQEAETNRQISVSLRSAWSSTIT*VTVDNV
Trigger: CACATTGTCAACTGTGACCCATGTTATTGTGGATGA...CCAGGCTGACCTCAAACTCACAGATATCTGCCTGTTTGTTTCTGCCTCCTGAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR CCA 90 bp ATTCAGGAGGCAGAAACAAACAGGCAGATATCTGTGAGTTTGAGGTCAGCCTGGCCAGCATCACAGCTATaGCAGATATTATATAGGAGA +
Preference number: 4 (lower is better)
Translates to: IQEAETNRQISVSLRSAWPASQL*QILYRR
Trigger: TCTCCTATATAATATCTGCCATAGCTGTGATGCTGG...CCAGGCTGACCTCAAACTCACAGATATCTGCCTGTTTGTTTCTGCCTCCTGAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR CCA 90 bp AAGGTTTTCAGAAAATCAGTGCATTCTGTAGCTACAACAGGCATAACGCTCTTCCTCAGAAGTGCCATGTaGTCACTGAAAGTCCCTGCA +
Preference number: 4 (lower is better)
Translates to: KVFRKSVHSVATTGITLFLRSAM*SLKVPA
Trigger: TGCAGGGACTTTCAGTGACCACATGGCACTTCTGAG...GAAGAGCGTTATGCCTGTTGTAGCTACAGAATGCACTGATTTTCTGAAAACCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR CCA 90 bp ACAACACTTCATCAAGGTTTTCAGAAAATCAGTGCATTCTGTAGCTACAACAGGGCTGGCACAAGGACTTaGGTAACTGCTGCTGTCTGT +
Preference number: 4 (lower is better)
Translates to: TTLHQGFQKISAFCSYNRAGTRT*VTAAVC
Trigger: ACAGACAGCAGCAGTTACCCAAGTCCTTGTGCCAGC...CCTGTTGTAGCTACAGAATGCACTGATTTTCTGAAAACCTTGATGAAGTGTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR CCA 90 bp TATATGAAGATGATGATTCTGAAGGAATACTCTATGCCTCAAATCCACTCATGGATGGAGGAGAGGGGCTaGCACAAGGACTTGGGTAAC +
Preference number: 4 (lower is better)
Translates to: YMKMMILKEYSMPQIHSWMEERG*HKDLGN
Trigger: GTTACCCAAGTCCTTGTGCCAGCCCCTCTCCTCCAT...CCATGAGTGGATTTGAGGCATAGAGTATTCCTTCAGAATCATCATCTTCATATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR TCA 90 bp AGGGCTGGAGAGATGGCTCAGCCATTAAAGGATAGGCTCACAACCAAAAAGTCAGCATGTTTTGTGTTATaGGTCAAATTACAGGTCATC +
Preference number: 4 (lower is better)
Translates to: RAGEMAQPLKDRLTTKKSACFVL*VKLQVI
Trigger: GATGACCTGTAATTTGACTCATAACACAAAACATGC...TGACTTTTTGGTTGTGAGCCTATCCTTTAATGGCTGAGCCATCTCTCCAGCCCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR TCA 90 bp AAGGTTTTCAGAAAATCAGTGCATTCTGTAGCTACAACAGGCATAACGCTCTTCTTTCTGTCAGCTGACTaGAGACAGCATCACCTCCAT +
Preference number: 4 (lower is better)
Translates to: KVFRKSVHSVATTGITLFFLSAD*RQHHLH
Trigger: ATGGAGGTGATGCTGTCTTCAGTCAGCTGACAGAAA...GAAGAGCGTTATGCCTGTTGTAGCTACAGAATGCACTGATTTTCTGAAAACCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR TCA 90 bp AAGGTTTTCAGAAAATCAGTGCATTCTGTAGCTACAACAGGCATAACGCTCTTCCTCTGTCTTCTGCACTaGGGTCATTCCCATTTGTCT +
Preference number: 4 (lower is better)
Translates to: KVFRKSVHSVATTGITLFLCLLH*GHSHLS
Trigger: AGACAAATGGGAATGACCTCAGTGCAGAAGACAGAG...GAAGAGCGTTATGCCTGTTGTAGCTACAGAATGCACTGATTTTCTGAAAACCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR TCA 90 bp ACAACACTTCATCAAGGTTTTCAGAAAATCAGTGCATTCTGTAGCTACAACAGGCCTGATGCTCTAAGCTaGCCAAGCAACTGTGTTCTC +
Preference number: 4 (lower is better)
Translates to: TTLHQGFQKISAFCSYNRPDALS*PSNCVL
Trigger: GAGAACACAGTTGCTTGGTCAGCTTAGAGCATCAGG...CCTGTTGTAGCTACAGAATGCACTGATTTTCTGAAAACCTTGATGAAGTGTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR TCA 90 bp GCTCAGCCATTAAAGGATAGGCTCACAACCAAAAAGTCAACAATAAGAGTTTGGGTAGCTTCATCGACTTaGGACCAAGGTTTAGATGGC +
Preference number: 4 (lower is better)
Translates to: AQPLKDRLTTKKSTIRVWVASST*DQGLDG
Trigger: GCCATCTAAACCTTGGTCTCAAGTCGATGAAGCTAC...CCAAACTCTTATTGTTGACTTTTTGGTTGTGAGCCTATCCTTTAATGGCTGAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR GCA 90 bp ACCAAAAAGTCAACAATAAGAGTTTGGCATCTCAGGCAGAGGTGGTGCAAGCCTGCATCAACATCTTTATaGAGCCATATGTCAGAAAGG +
Preference number: 4 (lower is better)
Translates to: TKKSTIRVWHLRQRWCKPASTSL*SHMSER
Trigger: CCTTTCTGACATATGGCTGCATAAAGATGTTGATGC...AGGCTTGCACCACCTCTGCCTGAGATGCCAAACTCTTATTGTTGACTTTTTGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR GCA 90 bp TATATGAAGATGATGATTCTGAAGGAATACTCTATGCCTCAAATCCACTCATGGCCTACAAAGCATAGCTaGCCGTTTCTGAGAGGCCTG +
Preference number: 4 (lower is better)
Translates to: YMKMMILKEYSMPQIHSWPTKHS*PFLRGL
Trigger: CAGGCCTCTCAGAAACGGGCAGCTATGCTTTGTAGG...CCATGAGTGGATTTGAGGCATAGAGTATTCCTTCAGAATCATCATCTTCATATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR GCA 90 bp AAGGTTTTCAGAAAATCAGTGCATTCTGTAGCTACAACAGGCATAACGCTCTTCGTCACTGAAAGTCCCTaGAGTGAAGCGTTTCCTACA +
Preference number: 4 (lower is better)
Translates to: KVFRKSVHSVATTGITLFVTESP*SEAFPT
Trigger: TGTAGGAAACGCTTCACTGCAGGGACTTTCAGTGAC...GAAGAGCGTTATGCCTGTTGTAGCTACAGAATGCACTGATTTTCTGAAAACCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR GCA 90 bp GGACTAGGAATGAAATTAAGCACTGATCTCATCAAAAGTCAAGAGAAATTACCTCCAATCTGTGGGCAATaGCTGAATCGCTGCAGCCTG +
Preference number: 4 (lower is better)
Translates to: GLGMKLSTDLIKSQEKLPPICGQ*LNRCSL
Trigger: CAGGCTGCAGCGATTCAGGCATTGCCCACAGATTGG...AGGTAATTTCTCTTGACTTTTGATGAGATCAGTGCTTAATTTCATTCCTAGTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR GCA 90 bp TGCCTCAAATCCACTCATGGCATACAACACTTCATCAAGGTTTTCAGAAAATCACTGAAGAGCGTTACTTaGCAGTCTTGCTGGTCCACA +
Preference number: 4 (lower is better)
Translates to: CLKSTHGIQHFIKVFRKSLKSVT*QSCWST
Trigger: TGTGGACCAGCAAGACTGGCAAGTAACGCTCTTCAG...TGATTTTCTGAAAACCTTGATGAAGTGTTGTATGCCATGAGTGGATTTGAGGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR CCA 90 bp AGGCTTTCTTTGCGTATCCACTCCACTTTAAATACTCCACCTAGTCCAGCTGACTTCTCTCTGTCCACGTaGACTAAATTAGGATACATG +
Preference number: 4 (lower is better)
Translates to: RLSLRIHSTLNTPPSPADFSLST*TKLGYM
Trigger: CATGTATCCTAATTTAGTCCACGTGGACAGAGAGAA...GTCAGCTGGACTAGGTGGAGTATTTAAAGTGGAGTGGATACGCAAAGAAAGCCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201507.2
CDS-3UTR CCA 90 bp AGGGCTGGAGAGATGGCTCAGCCATTAAAGGATAGGCTCACAACCAAAAAGTCAATATTAGCAATTCGATaGGCTCTGGTCATTTCATCA +
Preference number: 4 (lower is better)
Translates to: RAGEMAQPLKDRLTTKKSILAIR*ALVISS
Trigger: TGATGAAATGACCAGAGCCCATCGAATTGCTAATAT...TGACTTTTTGGTTGTGAGCCTATCCTTTAATGGCTGAGCCATCTCTCCAGCCCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR TCA 90 bp GCTCAGCCATTAAAGGATAGGCTCACAACCAAAAAGTCAACAATAAGAGTTTGGTTGAAGGTATTCTCTTaGGCTGAGTACCACTCTGTG +
Preference number: 4 (lower is better)
Translates to: AQPLKDRLTTKKSTIRVWLKVFS*AEYHSV
Trigger: CACAGAGTGGTACTCAGCTCAAGAGAATACCTTCAA...CCAAACTCTTATTGTTGACTTTTTGGTTGTGAGCCTATCCTTTAATGGCTGAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR TCA 90 bp AGAGAAAGTAGAAGAGTTCTCAAGACTTCATGCCAATCCATGATTTTCTATATCGCTTTCTGCCATGCCTaGAATGCTCTCAGAAGTGCC +
Preference number: 4 (lower is better)
Translates to: RESRRVLKTSCQSMIFYIAFCHA*NALRSA
Trigger: GGCACTTCTGAGAGCATTTCAGGCATGGCAGAAAGC...GATATAGAAAATCATGGATTGGCATGAAGTCTTGAGAACTCTTCTACTTTCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR TCA 90 bp ACAACACTTCATCAAGGTTTTCAGAAAATCAGTGCATTCTGTAGCTACAACAGGAGGTTGACTGAGAACTaGAGTGGGATGAAAGCGTAC +
Preference number: 4 (lower is better)
Translates to: TTLHQGFQKISAFCSYNRRLTEN*SGMKAY
Trigger: GTACGCTTTCATCCCACTTCAGTTCTCAGTCAACCT...CCTGTTGTAGCTACAGAATGCACTGATTTTCTGAAAACCTTGATGAAGTGTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR TCA 90 bp AAGGTTTTCAGAAAATCAGTGCATTCTGTAGCTACAACAGGCATAACGCTCTTCTATGCCACTTCTGTCTaGGCTGTAGCAATAAACTGG +
Preference number: 4 (lower is better)
Translates to: KVFRKSVHSVATTGITLFYATSV*AVAINW
Trigger: CCAGTTTATTGCTACAGCTCAGACAGAAGTGGCATA...GAAGAGCGTTATGCCTGTTGTAGCTACAGAATGCACTGATTTTCTGAAAACCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR GCA 90 bp GCTCAGCCATTAAAGGATAGGCTCACAACCAAAAAGTCAACAATAAGAGTTTGGTCAGTCTGTCCAAAGTaGTTAGCCCAATCTAAAGCC +
Preference number: 4 (lower is better)
Translates to: AQPLKDRLTTKKSTIRVWSVCPK*LAQSKA
Trigger: GGCTTTAGATTGGGCTAAGCACTTTGGACAGACTGA...CCAAACTCTTATTGTTGACTTTTTGGTTGTGAGCCTATCCTTTAATGGCTGAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR GCA 90 bp TGCCTCAAATCCACTCATGGCATACAACACTTCATCAAGGTTTTCAGAAAATCAGACTTGGGTAACTGCTaGTGTCTGTGGATTTCACAG +
Preference number: 4 (lower is better)
Translates to: CLKSTHGIQHFIKVFRKSDLGNC*CLWISQ
Trigger: CTGTGAAATCCACAGACAGCAGCAGTTACCCAAGTC...TGATTTTCTGAAAACCTTGATGAAGTGTTGTATGCCATGAGTGGATTTGAGGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR CCA 90 bp ATTCAGGAGGCAGAAACAAACAGGCAGATATCTGTGAGTTTGAGGTCAGCCTGGTCGTCTCAGCAATATTaGTGGAAAGGATTATTTTTC +
Preference number: 4 (lower is better)
Translates to: IQEAETNRQISVSLRSAWSSQQY*WKGLFF
Trigger: GAAAAATAATCCTTTCCACCAATATTGCTGAGACGA...CCAGGCTGACCTCAAACTCACAGATATCTGCCTGTTTGTTTCTGCCTCCTGAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR CCA 90 bp AGAGAAAGTAGAAGAGTTCTCAAGACTTCATGCCAATCCATGATTTTCTATATCACTTGCCAGTCTTGCTaGTCCACAGAACACCAGGAC +
Preference number: 4 (lower is better)
Translates to: RESRRVLKTSCQSMIFYITCQSC*STEHQD
Trigger: GTCCTGGTGTTCTGTGGACCAGCAAGACTGGCAAGT...GATATAGAAAATCATGGATTGGCATGAAGTCTTGAGAACTCTTCTACTTTCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
3UTR CAA 72 bp AGACATCCTAGAAAATCCCTGGAAATGTCCAGATCCTaGAACAGAAAATACCAAGTAAACCATGCTGCTCTC +
Preference number: 4 (lower is better)
Translates to: RHPRKSLEMSRS*NRKYQVNHAAL
Trigger: GAGAGCAGCATGGTTTACTTGGTATTTTCTGTTCAAGGATCTGGACATTTCCAGGGATTTTCTAGGATGTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201507.2
CDS-3UTR TCA 90 bp AGAGAAAGTAGAAGAGTTCTCAAGACTTCATGCCAATCCATGATTTTCTATATCCAAAGGAAGTTCTTCTaGAGACATGGGTCTTGGCCG +
Preference number: 4 (lower is better)
Translates to: RESRRVLKTSCQSMIFYIQRKFF*RHGSWP
Trigger: CGGCCAAGACCCATGTCTTCAGAAGAACTTCCTTTG...GATATAGAAAATCATGGATTGGCATGAAGTCTTGAGAACTCTTCTACTTTCTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR TCA 90 bp ACAACACTTCATCAAGGTTTTCAGAAAATCAGTGCATTCTGTAGCTACAACAGGCTATCTTTGTACTTCTaGGGTGGATGTAAGGCTGGA +
Preference number: 4 (lower is better)
Translates to: TTLHQGFQKISAFCSYNRLSLYF*GGCKAG
Trigger: TCCAGCCTTACATCCACCTCAGAAGTACAAAGATAG...CCTGTTGTAGCTACAGAATGCACTGATTTTCTGAAAACCTTGATGAAGTGTTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR GCA 90 bp GCTCAGCCATTAAAGGATAGGCTCACAACCAAAAAGTCAACAATAAGAGTTTGGTCTTTGGCGAAACCCTaGTTTCTAATCGGATCTGAT +
Preference number: 4 (lower is better)
Translates to: AQPLKDRLTTKKSTIRVWSLAKP*FLIGSD
Trigger: ATCAGATCCGATTAGAAAGCAGGGTTTCGCCAAAGA...CCAAACTCTTATTGTTGACTTTTTGGTTGTGAGCCTATCCTTTAATGGCTGAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR GCA 90 bp ACCAAAAAGTCAACAATAAGAGTTTGGCATCTCAGGCAGAGGTGGTGCAAGCCTATTGTCTTAAGCATCTaGACAGCATTTCTCACAATT +
Preference number: 4 (lower is better)
Translates to: TKKSTIRVWHLRQRWCKPIVLSI*TAFLTI
Trigger: AATTGTGAGAAATGCTGTGCAGATGCTTAAGACAAT...AGGCTTGCACCACCTCTGCCTGAGATGCCAAACTCTTATTGTTGACTTTTTGGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR GCA 90 bp GGACTAGGAATGAAATTAAGCACTGATCTCATCAAAAGTCAAGAGAAATTACCTCCACCCATCACTTCGTaGTTTCTGCCATGCCTGAAA +
Preference number: 4 (lower is better)
Translates to: GLGMKLSTDLIKSQEKLPPPITS*FLPCLK
Trigger: TTTCAGGCATGGCAGAAAGCACGAAGTGATGGGTGG...AGGTAATTTCTCTTGACTTTTGATGAGATCAGTGCTTAATTTCATTCCTAGTCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR GCA 90 bp AGAGAAAGTAGAAGAGTTCTCAAGACTTCATGCCAATCCATGATTTTCTATATCGTTACTTGCCAGTCTTaGTGGTCCACAGAACACCAG +
Preference number: 4 (lower is better)
Translates to: RESRRVLKTSCQSMIFYIVTCQS*WSTEHQ
Trigger: CTGGTGTTCTGTGGACCAGCAAGACTGGCAAGTAAC...GATATAGAAAATCATGGATTGGCATGAAGTCTTGAGAACTCTTCTACTTTCTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR GCA 90 bp CAAAGAGGTCATAATAGTAATAGTTATGTGAAGGTTGCTTCATGGGAAGCAAAACTGAAGAGCGTTACTTaGCAGTCTTGCTGGTCCACA +
Preference number: 4 (lower is better)
Translates to: QRGHNSNSYVKVASWEAKLKSVT*QSCWST
Trigger: TGTGGACCAGCAAGACTGGCAAGTAACGCTCTTCAG...TTTTGCTTCCCATGAAGCAACCTTCACATAACTATTACTATTATGACCTCTTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR GCA 90 bp TGCCTCAAATCCACTCATGGCATACAACACTTCATCAAGGTTTTCAGAAAATCACCATCTCACTGTCACTaGTGTCATTGGGAATACCAT +
Preference number: 4 (lower is better)
Translates to: CLKSTHGIQHFIKVFRKSPSHCH*CHWEYH
Trigger: ATGGTATTCCCAATGACAGCAGTGACAGTGAGATGG...TGATTTTCTGAAAACCTTGATGAAGTGTTGTATGCCATGAGTGGATTTGAGGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR CCA 90 bp AAGGTTTTCAGAAAATCAGTGCATTCTGTAGCTACAACAGGCATAACGCTCTTCCTGGGGCTAACAGCTTaGTATGTAAACAAAGTTCCT +
Preference number: 4 (lower is better)
Translates to: KVFRKSVHSVATTGITLFLGLTA*YVNKVP
Trigger: AGGAACTTTGTTTACATACCAAGCTGTTAGCCCCAG...GAAGAGCGTTATGCCTGTTGTAGCTACAGAATGCACTGATTTTCTGAAAACCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR CCA 90 bp TATATGAAGATGATGATTCTGAAGGAATACTCTATGCCTCAAATCCACTCATGGGCTGTAGCAATAAACTaGCAGCCTCTGGCTCTAGTT +
Preference number: 4 (lower is better)
Translates to: YMKMMILKEYSMPQIHSWAVAIN*QPLALV
Trigger: AACTAGAGCCAGAGGCTGCCAGTTTATTGCTACAGC...CCATGAGTGGATTTGAGGCATAGAGTATTCCTTCAGAATCATCATCTTCATATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR TCA 90 bp TGCCTCAAATCCACTCATGGCATACAACACTTCATCAAGGTTTTCAGAAAATCACTGGTAAAGACTGCCTaGATGAGTCAAATTCAGACT +
Preference number: 4 (lower is better)
Translates to: CLKSTHGIQHFIKVFRKSLVKTA*MSQIQT
Trigger: AGTCTGAATTTGACTCATTCAGGCAGTCTTTACCAG...TGATTTTCTGAAAACCTTGATGAAGTGTTGTATGCCATGAGTGGATTTGAGGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR TCA 90 bp TGCCTCAAATCCACTCATGGCATACAACACTTCATCAAGGTTTTCAGAAAATCATCATCTAACAGGAACTaGGGAATCTGTGTGGTCTTT +
Preference number: 4 (lower is better)
Translates to: CLKSTHGIQHFIKVFRKSSSNRN*GICVVF
Trigger: AAAGACCACACAGATTCCTCAGTTCCTGTTAGATGA...TGATTTTCTGAAAACCTTGATGAAGTGTTGTATGCCATGAGTGGATTTGAGGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR TCA 90 bp GGACTAGGAATGAAATTAAGCACTGATCTCATCAAAAGTCAAGAGAAATTACCTAGGTTGACTGAGAACTaGAGTGGGATGAAAGCGTAC +
Preference number: 4 (lower is better)
Translates to: GLGMKLSTDLIKSQEKLPRLTEN*SGMKAY
Trigger: GTACGCTTTCATCCCACTTCAGTTCTCAGTCAACCT...AGGTAATTTCTCTTGACTTTTGATGAGATCAGTGCTTAATTTCATTCCTAGTCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR TCA 90 bp AGAGAAAGTAGAAGAGTTCTCAAGACTTCATGCCAATCCATGATTTTCTATATCAAGGATGAAGGTTCCTaGAGAGCGTTACTTGCCAGT +
Preference number: 4 (lower is better)
Translates to: RESRRVLKTSCQSMIFYIKDEGS*RALLAS
Trigger: ACTGGCAAGTAACGCTCTTCAGGAACCTTCATCCTT...GATATAGAAAATCATGGATTGGCATGAAGTCTTGAGAACTCTTCTACTTTCTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR GCA 90 bp ACAACACTTCATCAAGGTTTTCAGAAAATCAGTGCATTCTGTAGCTACAACAGGCAATGTGCTATCACCTaGCATCAATGTACGAAGCAA +
Preference number: 4 (lower is better)
Translates to: TTLHQGFQKISAFCSYNRQCAIT*HQCTKQ
Trigger: TTGCTTCGTACATTGATGGCAGGTGATAGCACATTG...CCTGTTGTAGCTACAGAATGCACTGATTTTCTGAAAACCTTGATGAAGTGTTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR GCA 90 bp GGACTAGGAATGAAATTAAGCACTGATCTCATCAAAAGTCAAGAGAAATTACCTAACCATCAGAGCTGTTaGACTGGTCTCACTATGCCT +
Preference number: 4 (lower is better)
Translates to: GLGMKLSTDLIKSQEKLPNHQSC*TGLTMP
Trigger: AGGCATAGTGAGACCAGTGCAACAGCTCTGATGGTT...AGGTAATTTCTCTTGACTTTTGATGAGATCAGTGCTTAATTTCATTCCTAGTCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR GCA 90 bp AAGGTTTTCAGAAAATCAGTGCATTCTGTAGCTACAACAGGCATAACGCTCTTCAGTCAGATCTTCCCATaGATCCATTGCATCTATTGT +
Preference number: 4 (lower is better)
Translates to: KVFRKSVHSVATTGITLFSQIFP*IHCIYC
Trigger: ACAATAGATGCAATGGATGCATGGGAAGATCTGACT...GAAGAGCGTTATGCCTGTTGTAGCTACAGAATGCACTGATTTTCTGAAAACCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR GCA 90 bp CAAAGAGGTCATAATAGTAATAGTTATGTGAAGGTTGCTTCATGGGAAGCAAAAGTCACTGAAAGTCCCTaGAGTGAAGCGTTTCCTACA +
Preference number: 4 (lower is better)
Translates to: QRGHNSNSYVKVASWEAKVTESP*SEAFPT
Trigger: TGTAGGAAACGCTTCACTGCAGGGACTTTCAGTGAC...TTTTGCTTCCCATGAAGCAACCTTCACATAACTATTACTATTATGACCTCTTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR CCA 90 bp AAGGTTTTCAGAAAATCAGTGCATTCTGTAGCTACAACAGGCATAACGCTCTTCTTTGATGCTTTACTGTaGACATTGGCTCCCATACTA +
Preference number: 4 (lower is better)
Translates to: KVFRKSVHSVATTGITLFFDALL*TLAPIL
Trigger: TAGTATGGGAGCCAATGTCCACAGTAAAGCATCAAA...GAAGAGCGTTATGCCTGTTGTAGCTACAGAATGCACTGATTTTCTGAAAACCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR CCA 90 bp GGACTAGGAATGAAATTAAGCACTGATCTCATCAAAAGTCAAGAGAAATTACCTGCTGTAGCAATAAACTaGCAGCCTCTGGCTCTAGTT +
Preference number: 4 (lower is better)
Translates to: GLGMKLSTDLIKSQEKLPAVAIN*QPLALV
Trigger: AACTAGAGCCAGAGGCTGCCAGTTTATTGCTACAGC...AGGTAATTTCTCTTGACTTTTGATGAGATCAGTGCTTAATTTCATTCCTAGTCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR TCA 90 bp AGAGAAAGTAGAAGAGTTCTCAAGACTTCATGCCAATCCATGATTTTCTATATCGTGACAGGAAATCTCTaGATTAGGCTCCTAACAGCA +
Preference number: 4 (lower is better)
Translates to: RESRRVLKTSCQSMIFYIVTGNL*IRLLTA
Trigger: TGCTGTTAGGAGCCTAATTCAGAGATTTCCTGTCAC...GATATAGAAAATCATGGATTGGCATGAAGTCTTGAGAACTCTTCTACTTTCTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR TCA 90 bp CAAAGAGGTCATAATAGTAATAGTTATGTGAAGGTTGCTTCATGGGAAGCAAAAGCTAGTCGTCTTGGTTaGGTACAAAATATTCGGCAG +
Preference number: 4 (lower is better)
Translates to: QRGHNSNSYVKVASWEAKASRLG*VQNIRQ
Trigger: CTGCCGAATATTTTGTACTCAACCAAGACGACTAGC...TTTTGCTTCCCATGAAGCAACCTTCACATAACTATTACTATTATGACCTCTTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR GCA 90 bp CAAAGAGGTCATAATAGTAATAGTTATGTGAAGGTTGCTTCATGGGAAGCAAAAGCCTTTGCGCTGTATTaGACTAGCTTTGGAAATCCA +
Preference number: 4 (lower is better)
Translates to: QRGHNSNSYVKVASWEAKAFALY*TSFGNP
Trigger: TGGATTTCCAAAGCTAGTGCAATACAGCGCAAAGGC...TTTTGCTTCCCATGAAGCAACCTTCACATAACTATTACTATTATGACCTCTTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR GCA 90 bp CAAAGAGGTCATAATAGTAATAGTTATGTGAAGGTTGCTTCATGGGAAGCAAAAACACTTCAAAACCACTaGACACAGGACCATTTTCCC +
Preference number: 4 (lower is better)
Translates to: QRGHNSNSYVKVASWEAKTLQNH*TQDHFP
Trigger: GGGAAAATGGTCCTGTGTGCAGTGGTTTTGAAGTGT...TTTTGCTTCCCATGAAGCAACCTTCACATAACTATTACTATTATGACCTCTTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR GCA 90 bp ACAACACTTCATCAAGGTTTTCAGAAAATCAGTGCATTCTGTAGCTACAACAGGATTAGGATACATGCCTaGTACCAATGCAGCTTTAAC +
Preference number: 4 (lower is better)
Translates to: TTLHQGFQKISAFCSYNRIRIHA*YQCSFN
Trigger: GTTAAAGCTGCATTGGTAGCAGGCATGTATCCTAAT...CCTGTTGTAGCTACAGAATGCACTGATTTTCTGAAAACCTTGATGAAGTGTTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR GCA 90 bp CAAAGAGGTCATAATAGTAATAGTTATGTGAAGGTTGCTTCATGGGAAGCAAAAGCTCCTGCCCATCTCTaGTTATCTGTACTTTCTTGT +
Preference number: 4 (lower is better)
Translates to: QRGHNSNSYVKVASWEAKAPAHL*LSVLSC
Trigger: ACAAGAAAGTACAGATAAGCAGAGATGGGCAGGAGC...TTTTGCTTCCCATGAAGCAACCTTCACATAACTATTACTATTATGACCTCTTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR CCA 90 bp TATATGAAGATGATGATTCTGAAGGAATACTCTATGCCTCAAATCCACTCATGGCTGGGGCTAACAGCTTaGTATGTAAACAAAGTTCCT +
Preference number: 4 (lower is better)
Translates to: YMKMMILKEYSMPQIHSWLGLTA*YVNKVP
Trigger: AGGAACTTTGTTTACATACCAAGCTGTTAGCCCCAG...CCATGAGTGGATTTGAGGCATAGAGTATTCCTTCAGAATCATCATCTTCATATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR TCA 90 bp AGAGAAAGTAGAAGAGTTCTCAAGACTTCATGCCAATCCATGATTTTCTATATCCTTTTCACAGGAACTTaGGGAATGCCATTGTTGAGT +
Preference number: 4 (lower is better)
Translates to: RESRRVLKTSCQSMIFYILFTGT*GMPLLS
Trigger: ACTCAACAATGGCATTCCTCAAGTTCCTGTGAAAAG...GATATAGAAAATCATGGATTGGCATGAAGTCTTGAGAACTCTTCTACTTTCTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR TCA 90 bp TATATGAAGATGATGATTCTGAAGGAATACTCTATGCCTCAAATCCACTCATGGCAGATACCCTTCTGTTaGGAAATTTCAAGGTTTCTC +
Preference number: 4 (lower is better)
Translates to: YMKMMILKEYSMPQIHSWQIPFC*EISRFL
Trigger: GAGAAACCTTGAAATTTCTCAACAGAAGGGTATCTG...CCATGAGTGGATTTGAGGCATAGAGTATTCCTTCAGAATCATCATCTTCATATA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR GCA 90 bp AAGGTTTTCAGAAAATCAGTGCATTCTGTAGCTACAACAGGCATAACGCTCTTCAAAACTGGTAAAGACTaGCTGAATGAGTCAAATTCA +
Preference number: 4 (lower is better)
Translates to: KVFRKSVHSVATTGITLFKTGKD*LNESNS
Trigger: TGAATTTGACTCATTCAGGCAGTCTTTACCAGTTTT...GAAGAGCGTTATGCCTGTTGTAGCTACAGAATGCACTGATTTTCTGAAAACCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR GCA 90 bp GGACTAGGAATGAAATTAAGCACTGATCTCATCAAAAGTCAAGAGAAATTACCTTCACAGTTGACAATGTaGTATCACCTGCCATCAATG +
Preference number: 4 (lower is better)
Translates to: GLGMKLSTDLIKSQEKLPSQLTM*YHLPSM
Trigger: CATTGATGGCAGGTGATAGCACATTGTCAACTGTGA...AGGTAATTTCTCTTGACTTTTGATGAGATCAGTGCTTAATTTCATTCCTAGTCC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR CCA 90 bp TATATGAAGATGATGATTCTGAAGGAATACTCTATGCCTCAAATCCACTCATGGTTCTCTCTGTCCACGTaGACTAAATTAGGATACATG +
Preference number: 4 (lower is better)
Translates to: YMKMMILKEYSMPQIHSWFSLST*TKLGYM
Trigger: CATGTATCCTAATTTAGTCCACGTGGACAGAGAGAA...CCATGAGTGGATTTGAGGCATAGAGTATTCCTTCAGAATCATCATCTTCATATA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR CCA 90 bp AAGGTTTTCAGAAAATCAGTGCATTCTGTAGCTACAACAGGCATAACGCTCTTCTTTTCCTACTATTATTaGATCTCCAAGATGAAGCCA +
Preference number: 4 (lower is better)
Translates to: KVFRKSVHSVATTGITLFFSYYY*ISKMKP
Trigger: TGGCTTCATCTTGGAGATCCAATAATAGTAGGAAAA...GAAGAGCGTTATGCCTGTTGTAGCTACAGAATGCACTGATTTTCTGAAAACCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR GCA 90 bp CAAAGAGGTCATAATAGTAATAGTTATGTGAAGGTTGCTTCATGGGAAGCAAAAATTAGGATACATGCCTaGTACCAATGCAGCTTTAAC +
Preference number: 4 (lower is better)
Translates to: QRGHNSNSYVKVASWEAKIRIHA*YQCSFN
Trigger: GTTAAAGCTGCATTGGTAGCAGGCATGTATCCTAAT...TTTTGCTTCCCATGAAGCAACCTTCACATAACTATTACTATTATGACCTCTTTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR CCA 90 bp TGCCTCAAATCCACTCATGGCATACAACACTTCATCAAGGTTTTCAGAAAATCATCTCAGCAATATTGGTaGAAAGGATTATTTTTCGGA +
Preference number: 4 (lower is better)
Translates to: CLKSTHGIQHFIKVFRKSSQQYW*KGLFFG
Trigger: TCCGAAAAATAATCCTTTCCACCAATATTGCTGAGA...TGATTTTCTGAAAACCTTGATGAAGTGTTGTATGCCATGAGTGGATTTGAGGCA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR CCA 90 bp TATATGAAGATGATGATTCTGAAGGAATACTCTATGCCTCAAATCCACTCATGGATATTAGCAATTCGATaGGCTCTGGTCATTTCATCA +
Preference number: 4 (lower is better)
Translates to: YMKMMILKEYSMPQIHSWILAIR*ALVISS
Trigger: TGATGAAATGACCAGAGCCCATCGAATTGCTAATAT...CCATGAGTGGATTTGAGGCATAGAGTATTCCTTCAGAATCATCATCTTCATATA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR GCA 90 bp AGAGAAAGTAGAAGAGTTCTCAAGACTTCATGCCAATCCATGATTTTCTATATCAATCGATCCCTTTCATaGACTTCATCCACAATAACA +
Preference number: 4 (lower is better)
Translates to: RESRRVLKTSCQSMIFYINRSLS*TSSTIT
Trigger: TGTTATTGTGGATGAAGTGCATGAAAGGGATCGATT...GATATAGAAAATCATGGATTGGCATGAAGTCTTGAGAACTCTTCTACTTTCTCT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR GCA 90 bp AGAGAAAGTAGAAGAGTTCTCAAGACTTCATGCCAATCCATGATTTTCTATATCTGTAAACAAAGTTCCTaGAATGGCATTCTCAAGAGT +
Preference number: 4 (lower is better)
Translates to: RESRRVLKTSCQSMIFYICKQSS*NGILKS
Trigger: ACTCTTGAGAATGCCATTGCAGGAACTTTGTTTACA...GATATAGAAAATCATGGATTGGCATGAAGTCTTGAGAACTCTTCTACTTTCTCT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR GCA 90 bp GGACTAGGAATGAAATTAAGCACTGATCTCATCAAAAGTCAAGAGAAATTACCTATTGTCTTAAGCATCTaGACAGCATTTCTCACAATT +
Preference number: 4 (lower is better)
Translates to: GLGMKLSTDLIKSQEKLPIVLSI*TAFLTI
Trigger: AATTGTGAGAAATGCTGTGCAGATGCTTAAGACAAT...AGGTAATTTCTCTTGACTTTTGATGAGATCAGTGCTTAATTTCATTCCTAGTCC
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR CCA 90 bp CAAAGAGGTCATAATAGTAATAGTTATGTGAAGGTTGCTTCATGGGAAGCAAAATCTCAGCAATATTGGTaGAAAGGATTATTTTTCGGA +
Preference number: 4 (lower is better)
Translates to: QRGHNSNSYVKVASWEAKSQQYW*KGLFFG
Trigger: TCCGAAAAATAATCCTTTCCACCAATATTGCTGAGA...TTTTGCTTCCCATGAAGCAACCTTCACATAACTATTACTATTATGACCTCTTTG
34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR CCA 90 bp CAAAGAGGTCATAATAGTAATAGTTATGTGAAGGTTGCTTCATGGGAAGCAAAATCGTCTCAGCAATATTaGTGGAAAGGATTATTTTTC +
Preference number: 4 (lower is better)
Translates to: QRGHNSNSYVKVASWEAKSSQQY*WKGLFF
Trigger: GAAAAATAATCCTTTCCACCAATATTGCTGAGACGA...TTTTGCTTCCCATGAAGCAACCTTCACATAACTATTACTATTATGACCTCTTTG
34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR CCA 90 bp AGAGAAAGTAGAAGAGTTCTCAAGACTTCATGCCAATCCATGATTTTCTATATCTTTTCCTACTATTATTaGATCTCCAAGATGAAGCCA +
Preference number: 4 (lower is better)
Translates to: RESRRVLKTSCQSMIFYIFSYYY*ISKMKP
Trigger: TGGCTTCATCTTGGAGATCCAATAATAGTAGGAAAA...GATATAGAAAATCATGGATTGGCATGAAGTCTTGAGAACTCTTCTACTTTCTCT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS CCA 90 bp TTTGAGGCCCTTGGCCCGGCCACCGCCTCCAGGACCACACGAAGCTaGGCCGCCGCCGCCACCGCCACCGCCGCCGCCACTGCCACCTCC +
Preference number: 5 (lower is better)
Translates to: FEALGPATASRTTRS*AAAATATAAATATS
Trigger: GGAGGTGGCAGTGGCGGCGGCGGTGGCGGTGGCGGCGGCGGCCCAGCTTCGTGTGGTCCTGGAGGCGGTGGCCGGGCCAAGGGCCTCAAA
77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS TCA 90 bp CTGCTGTCATTGGGAATACCATCCGCTCTAAAGGATGAAGGTTCCTaGAGAGCGTTACTTGCCAGTCTTGCTGGTCCACAGAACACCAGG +
Preference number: 5 (lower is better)
Translates to: LLSLGIPSALKDEGS*RALLASLAGPQNTR
Trigger: CCTGGTGTTCTGTGGACCAGCAAGACTGGCAAGTAACGCTCTTCAGGAACCTTCATCCTTTAGAGCGGATGGTATTCCCAATGACAGCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS GCA 90 bp TGCCTGAAATGCTCTCAGAAGTGCCATGTGGTCACTGAAAGTCCCTaGAGTGAAGCGTTTCCTACAAAGCATAGCTGCCCGTTTCTGAGA +
Preference number: 5 (lower is better)
Translates to: CLKCSQKCHVVTESP*SEAFPTKHSCPFLR
Trigger: TCTCAGAAACGGGCAGCTATGCTTTGTAGGAAACGCTTCACTGCAGGGACTTTCAGTGACCACATGGCACTTCTGAGAGCATTTCAGGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS CCA 90 bp GCTTTACTGTGGACATTGGCTCCCATACTAATTAACTGCTCTACTTaGCTCGTAAAGCCCCGTCCTGCAGCAACCATCAGAGCTGTTGCA +
Preference number: 5 (lower is better)
Translates to: ALLWTLAPILINCST*LVKPRPAATIRAVA
Trigger: TGCAACAGCTCTGATGGTTGCTGCAGGACGGGGCTTTACGAGCCAAGTAGAGCAGTTAATTAGTATGGGAGCCAATGTCCACAGTAAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR CAA 90 bp ACCAAAAAGTCAACAATAAGAGTTTGGCATCTCAGGCAGAGGTGGTGCAAGCCTCAACCATCAGAGCTGTaGCACTGGTCTCACTATGCC +
Preference number: 5 (lower is better)
Translates to: TKKSTIRVWHLRQRWCKPQPSEL*HWSHYA
Trigger: GGCATAGTGAGACCAGTGCAACAGCTCTGATGGTTG...AGGCTTGCACCACCTCTGCCTGAGATGCCAAACTCTTATTGTTGACTTTTTGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS GCA 90 bp CCATTTGATGCTTTACTGTGGACATTGGCTCCCATACTAATTAACTaGTCTACTTGGCTCGTAAAGCCCCGTCCTGCAGCAACCATCAGA +
Preference number: 5 (lower is better)
Translates to: PFDALLWTLAPILIN*STWLVKPRPAATIR
Trigger: TCTGATGGTTGCTGCAGGACGGGGCTTTACGAGCCAAGTAGAGCAGTTAATTAGTATGGGAGCCAATGTCCACAGTAAAGCATCAAATGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS GCA 90 bp ATGGGCTCTGGTCATTTCATCATAAATAAGCCAATCTGTGGGCAATaGCTGAATCGCTGCAGCCTGACCATTGGCGGGAGGAATCTTTTT +
Preference number: 5 (lower is better)
Translates to: MGSGHFIINKPICGQ*LNRCSLTIGGRNLF
Trigger: AAAAAGATTCCTCCCGCCAATGGTCAGGCTGCAGCGATTCAGGCATTGCCCACAGATTGGCTTATTTATGATGAAATGACCAGAGCCCAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR CAA 90 bp CAAAGAGGTCATAATAGTAATAGTTATGTGAAGGTTGCTTCATGGGAAGCAAAAATGTCTTTGAGGCCCTaGGCCCGGCCACCGCCTCCA +
Preference number: 5 (lower is better)
Translates to: QRGHNSNSYVKVASWEAKMSLRP*ARPPPP
Trigger: TGGAGGCGGTGGCCGGGCCAAGGGCCTCAAAGACAT...TTTTGCTTCCCATGAAGCAACCTTCACATAACTATTACTATTATGACCTCTTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR CAA 90 bp AGGGCTGGAGAGATGGCTCAGCCATTAAAGGATAGGCTCACAACCAAAAAGTCAGGTAGCTTCATCGACTaGAGACCAAGGTTTAGATGG +
Preference number: 5 (lower is better)
Translates to: RAGEMAQPLKDRLTTKKSGSFID*RPRFRW
Trigger: CCATCTAAACCTTGGTCTCAAGTCGATGAAGCTACC...TGACTTTTTGGTTGTGAGCCTATCCTTTAATGGCTGAGCCATCTCTCCAGCCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS TCA 90 bp TGCCTGAATGAGTCAAATTCAGACTCTCCCCTTTTCACAGGAACTTaGGGAATGCCATTGTTGAGTCGCCCGCTTGTCTTGCTCATTTCT +
Preference number: 5 (lower is better)
Translates to: CLNESNSDSPLFTGT*GMPLLSRPLVLLIS
Trigger: AGAAATGAGCAAGACAAGCGGGCGACTCAACAATGGCATTCCTCAAGTTCCTGTGAAAAGGGGAGAGTCTGAATTTGACTCATTCAGGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS TCA 90 bp CAGCCTGACCATTGGCGGGAGGAATCTTTTTGTATTGAGGTTGACTaGGAACTGAAGTGGGATGAAAGCGTACTTTCTTTTCCTTTGGCC +
Preference number: 5 (lower is better)
Translates to: QPDHWREESFCIEVD*ELKWDESVLSFPLA
Trigger: GGCCAAAGGAAAAGAAAGTACGCTTTCATCCCACTTCAGTTCTCAGTCAACCTCAATACAAAAAGATTCCTCCCGCCAATGGTCAGGCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS TCA 90 bp TCTTGCTGGTCCACAGAACACCAGGACAGTAACAGGTGTCACTGCTaGACAACATCTGATATTAGCAATTCGATGGGCTCTGGTCATTTC +
Preference number: 5 (lower is better)
Translates to: SCWSTEHQDSNRCHC*TTSDISNSMGSGHF
Trigger: GAAATGACCAGAGCCCATCGAATTGCTAATATCAGATGTTGTTCAGCAGTGACACCTGTTACTGTCCTGGTGTTCTGTGGACCAGCAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS GCA 90 bp TACTTGGCTCGTAAAGCCCCGTCCTGCAGCAACCATCAGAGCTGTTaGACTGGTCTCACTATGCCTATAATCAACACTAACATTTTCAGT +
Preference number: 5 (lower is better)
Translates to: YLARKAPSCSNHQSC*TGLTMPIINTNIFS
Trigger: ACTGAAAATGTTAGTGTTGATTATAGGCATAGTGAGACCAGTGCAACAGCTCTGATGGTTGCTGCAGGACGGGGCTTTACGAGCCAAGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS GCA 90 bp GTCAGATCTTCCCATGCATCCATTGCATCTATTGTCTTAAGCATCTaGACAGCATTTCTCACAATTAAAGCTGGAGGCGGTTCAGGGGCT +
Preference number: 5 (lower is better)
Translates to: VRSSHASIASIVLSI*TAFLTIKAGGGSGA
Trigger: AGCCCCTGAACCGCCTCCAGCTTTAATTGTGAGAAATGCTGTGCAGATGCTTAAGACAATAGATGCAATGGATGCATGGGAAGATCTGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS CCA 90 bp CAAAACCACTGCACACAGGACCATTTTCCCAAGATGCGGTTCTACTaGCAAATCAGCCAAATGATACCCAAGTTCAGTCAGATCTTCCCA +
Preference number: 5 (lower is better)
Translates to: QNHCTQDHFPKMRFY*QISQMIPKFSQIFP
Trigger: TGGGAAGATCTGACTGAACTTGGGTATCATTTGGCTGATTTGCCAGTAGAACCGCATCTTGGGAAAATGGTCCTGTGTGCAGTGGTTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR CAA 90 bp AAGGTTTTCAGAAAATCAGTGCATTCTGTAGCTACAACAGGCATAACGCTCTTCCCTGAAGAGCGTTACTaGCCAGTCTTGCTGGTCCAC +
Preference number: 5 (lower is better)
Translates to: KVFRKSVHSVATTGITLFPEERY*PVLLVH
Trigger: GTGGACCAGCAAGACTGGCAAGTAACGCTCTTCAGG...GAAGAGCGTTATGCCTGTTGTAGCTACAGAATGCACTGATTTTCTGAAAACCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR CAA 90 bp ATTCAGGAGGCAGAAACAAACAGGCAGATATCTGTGAGTTTGAGGTCAGCCTGGGCCTCTGGCTCTAGTTaGAAGTTAAGCCATTCATCA +
Preference number: 5 (lower is better)
Translates to: IQEAETNRQISVSLRSAWASGSS*KLSHSS
Trigger: TGATGAATGGCTTAACTTCAAACTAGAGCCAGAGGC...CCAGGCTGACCTCAAACTCACAGATATCTGCCTGTTTGTTTCTGCCTCCTGAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR CAA 90 bp ACCAAAAAGTCAACAATAAGAGTTTGGCATCTCAGGCAGAGGTGGTGCAAGCCTGGTAGCTTCATCGACTaGAGACCAAGGTTTAGATGG +
Preference number: 5 (lower is better)
Translates to: TKKSTIRVWHLRQRWCKPGSFID*RPRFRW
Trigger: CCATCTAAACCTTGGTCTCAAGTCGATGAAGCTACC...AGGCTTGCACCACCTCTGCCTGAGATGCCAAACTCTTATTGTTGACTTTTTGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS TCA 90 bp AGGACCATTTTCCCAAGATGCGGTTCTACTGGCAAATCAGCCAAATaGTACCCAAGTTCAGTCAGATCTTCCCATGCATCCATTGCATCT +
Preference number: 5 (lower is better)
Translates to: RTIFPRCGSTGKSAK*YPSSVRSSHASIAS
Trigger: AGATGCAATGGATGCATGGGAAGATCTGACTGAACTTGGGTATCATTTGGCTGATTTGCCAGTAGAACCGCATCTTGGGAAAATGGTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS GCA 90 bp CATTTCATCATAAATAAGCCAATCTGTGGGCAATGCCTGAATCGCTaGAGCCTGACCATTGGCGGGAGGAATCTTTTTGTATTGAGGTTG +
Preference number: 5 (lower is better)
Translates to: HFIINKPICGQCLNR*SLTIGGRNLFVLRL
Trigger: CAACCTCAATACAAAAAGATTCCTCCCGCCAATGGTCAGGCTGCAGCGATTCAGGCATTGCCCACAGATTGGCTTATTTATGATGAAATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR CAA 90 bp TATATGAAGATGATGATTCTGAAGGAATACTCTATGCCTCAAATCCACTCATGGTCGATACGAATGTCTTaGAGGCCCTTGGCCCGGCCA +
Preference number: 5 (lower is better)
Translates to: YMKMMILKEYSMPQIHSWSIRMS*RPLARP
Trigger: TGGCCGGGCCAAGGGCCTCAAAGACATTCGTATCGA...CCATGAGTGGATTTGAGGCATAGAGTATTCCTTCAGAATCATCATCTTCATATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR CAA 90 bp AGAGAAAGTAGAAGAGTTCTCAAGACTTCATGCCAATCCATGATTTTCTATATCCGCTCCAGAGCGATGTaGACGGCGATCTTCACCTCC +
Preference number: 5 (lower is better)
Translates to: RESRRVLKTSCQSMIFYIRSRAM*TAIFTS
Trigger: GGAGGTGAAGATCGCCGTCAACATCGCTCTGGAGCG...GATATAGAAAATCATGGATTGGCATGAAGTCTTGAGAACTCTTCTACTTTCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR CAA 90 bp AGGCTTTCTTTGCGTATCCACTCCACTTTAAATACTCCACCTAGTCCAGCTGACACTGGGGCTAACAGCTaGGTATGTAAACAAAGTTCC +
Preference number: 5 (lower is better)
Translates to: RLSLRIHSTLNTPPSPADTGANS*VCKQSS
Trigger: GGAACTTTGTTTACATACCAAGCTGTTAGCCCCAGT...GTCAGCTGGACTAGGTGGAGTATTTAAAGTGGAGTGGATACGCAAAGAAAGCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201507.2
CDS-3UTR CAA 90 bp TGCCTCAAATCCACTCATGGCATACAACACTTCATCAAGGTTTTCAGAAAATCACCTGAAGAGCGTTACTaGCCAGTCTTGCTGGTCCAC +
Preference number: 5 (lower is better)
Translates to: CLKSTHGIQHFIKVFRKSPEERY*PVLLVH
Trigger: GTGGACCAGCAAGACTGGCAAGTAACGCTCTTCAGG...TGATTTTCTGAAAACCTTGATGAAGTGTTGTATGCCATGAGTGGATTTGAGGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR CAA 90 bp AGGCTTTCTTTGCGTATCCACTCCACTTTAAATACTCCACCTAGTCCAGCTGACGCCTCTGGCTCTAGTTaGAAGTTAAGCCATTCATCA +
Preference number: 5 (lower is better)
Translates to: RLSLRIHSTLNTPPSPADASGSS*KLSHSS
Trigger: TGATGAATGGCTTAACTTCAAACTAGAGCCAGAGGC...GTCAGCTGGACTAGGTGGAGTATTTAAAGTGGAGTGGATACGCAAAGAAAGCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201507.2
CDS-3UTR CAA 90 bp ACCAAAAAGTCAACAATAAGAGTTTGGCATCTCAGGCAGAGGTGGTGCAAGCCTAAGGGAAGGCTTTCTTaGCGTATCCACTCCACTTTA +
Preference number: 5 (lower is better)
Translates to: TKKSTIRVWHLRQRWCKPKGRLS*RIHSTL
Trigger: TAAAGTGGAGTGGATACGCAAAGAAAGCCTTCCCTT...AGGCTTGCACCACCTCTGCCTGAGATGCCAAACTCTTATTGTTGACTTTTTGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS TCA 90 bp ACCATTGGCGGGAGGAATCTTTTTGTATTGAGGTTGACTGAGAACTaGAGTGGGATGAAAGCGTACTTTCTTTTCCTTTGGCCCTGTCAA +
Preference number: 5 (lower is better)
Translates to: TIGGRNLFVLRLTEN*SGMKAYFLFLWPCQ
Trigger: TTGACAGGGCCAAAGGAAAAGAAAGTACGCTTTCATCCCACTTCAGTTCTCAGTCAACCTCAATACAAAAAGATTCCTCCCGCCAATGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS CCA 90 bp TGCTTAGCCCAATCTAAAGCCATCCAGCCATTTGATGCTTTACTGTaGACATTGGCTCCCATACTAATTAACTGCTCTACTTGGCTCGTA +
Preference number: 5 (lower is better)
Translates to: CLAQSKAIQPFDALL*TLAPILINCSTWLV
Trigger: TACGAGCCAAGTAGAGCAGTTAATTAGTATGGGAGCCAATGTCCACAGTAAAGCATCAAATGGCTGGATGGCTTTAGATTGGGCTAAGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR CAA 90 bp ACAAACAGGCAGATATCTGTGAGTTTGAGGTCAGCCTGGTCTTACAGAGCTAGTTCGCTGCTAGTCGTCTaGGTTGAGTACAAAATATTC +
Preference number: 5 (lower is better)
Translates to: TNRQISVSLRSAWSYRASSLLVV*VEYKIF
Trigger: GAATATTTTGTACTCAACCAAGACGACTAGCAGCGA...ACTAGCTCTGTAAGACCAGGCTGACCTCAAACTCACAGATATCTGCCTGTTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR CAA 90 bp ACAAACAGGCAGATATCTGTGAGTTTGAGGTCAGCCTGGTCTTACAGAGCTAGTACAAACACAACATCATaGACAGTGATGCTCGTCTCA +
Preference number: 5 (lower is better)
Translates to: TNRQISVSLRSAWSYRASTNTTS*TVMLVS
Trigger: TGAGACGAGCATCACTGTCAATGATGTTGTGTTTGT...ACTAGCTCTGTAAGACCAGGCTGACCTCAAACTCACAGATATCTGCCTGTTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR CAA 90 bp ACAACACTTCATCAAGGTTTTCAGAAAATCAGTGCATTCTGTAGCTACAACAGGCGTTACTTGCCAGTCTaGCTGGTCCACAGAACACCA +
Preference number: 5 (lower is better)
Translates to: TTLHQGFQKISAFCSYNRRYLPV*LVHRTP
Trigger: TGGTGTTCTGTGGACCAGCAAGACTGGCAAGTAACG...CCTGTTGTAGCTACAGAATGCACTGATTTTCTGAAAACCTTGATGAAGTGTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR CAA 90 bp ACAAACAGGCAGATATCTGTGAGTTTGAGGTCAGCCTGGTCTTACAGAGCTAGTTTGTCGTTCCAAGGATaGAGTAAATGGTGTGCAAAC +
Preference number: 5 (lower is better)
Translates to: TNRQISVSLRSAWSYRASLSFQG*SKWCAN
Trigger: GTTTGCACACCATTTACTCAATCCTTGGAACGACAA...ACTAGCTCTGTAAGACCAGGCTGACCTCAAACTCACAGATATCTGCCTGTTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR CAA 90 bp TGCCTCAAATCCACTCATGGCATACAACACTTCATCAAGGTTTTCAGAAAATCATGTGAGGGTGGTCTGTaGTTTCTCCTCTCGTTGCTT +
Preference number: 5 (lower is better)
Translates to: CLKSTHGIQHFIKVFRKSCEGGL*FLLSLL
Trigger: AAGCAACGAGAGGAGAAACAACAGACCACCCTCACA...TGATTTTCTGAAAACCTTGATGAAGTGTTGTATGCCATGAGTGGATTTGAGGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR CAA 90 bp ACCAAAAAGTCAACAATAAGAGTTTGGCATCTCAGGCAGAGGTGGTGCAAGCCTCTTATCTGTACTTTCTaGTTGTCGTTCCAAGGATTG +
Preference number: 5 (lower is better)
Translates to: TKKSTIRVWHLRQRWCKPLICTF*LSFQGL
Trigger: CAATCCTTGGAACGACAACAAGAAAGTACAGATAAG...AGGCTTGCACCACCTCTGCCTGAGATGCCAAACTCTTATTGTTGACTTTTTGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS TCA 90 bp CATCTTTATGCAGCCATATGTCAGAAAGGCAGGCATCCATCTCCTTaGTTAACCATGGTTCAAGGCAATTCACATCTTTTTCTGTCAGCT +
Preference number: 5 (lower is better)
Translates to: HLYAAICQKGRHPSP*LTMVQGNSHLFLSA
Trigger: AGCTGACAGAAAAAGATGTGAATTGCCTTGAACCATGGTTAATCAAGGAGATGGATGCCTGCCTTTCTGACATATGGCTGCATAAAGATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS TCA 90 bp GTGCTTAAAACAGCTATAATTGCTCGTATGGTAGCTTCATCGACTTaGGACCAAGGTTTAGATGGCGCTCTCATTCGGCGTAAAAACAAA +
Preference number: 5 (lower is better)
Translates to: VLKTAIIARMVASST*DQGLDGALIRRKNK
Trigger: TTTGTTTTTACGCCGAATGAGAGCGCCATCTAAACCTTGGTCTCAAGTCGATGAAGCTACCATACGAGCAATTATAGCTGTTTTAAGCAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS GCA 90 bp TGGCAAATCAGCCAAATGATACCCAAGTTCAGTCAGATCTTCCCATaGATCCATTGCATCTATTGTCTTAAGCATCTGCACAGCATTTCT +
Preference number: 5 (lower is better)
Translates to: WQISQMIPKFSQIFP*IHCIYCLKHLHSIS
Trigger: AGAAATGCTGTGCAGATGCTTAAGACAATAGATGCAATGGATGCATGGGAAGATCTGACTGAACTTGGGTATCATTTGGCTGATTTGCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR CAA 90 bp AAGGTTTTCAGAAAATCAGTGCATTCTGTAGCTACAACAGGCATAACGCTCTTCATGTCAGAAGTGTCTTaGGCGAAACCCTGCTTTCTA +
Preference number: 5 (lower is better)
Translates to: KVFRKSVHSVATTGITLFMSEVS*AKPCFL
Trigger: TAGAAAGCAGGGTTTCGCCAAAGACACTTCTGACAT...GAAGAGCGTTATGCCTGTTGTAGCTACAGAATGCACTGATTTTCTGAAAACCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR CAA 90 bp CAAAGAGGTCATAATAGTAATAGTTATGTGAAGGTTGCTTCATGGGAAGCAAAACGTTACTTGCCAGTCTaGCTGGTCCACAGAACACCA +
Preference number: 5 (lower is better)
Translates to: QRGHNSNSYVKVASWEAKRYLPV*LVHRTP
Trigger: TGGTGTTCTGTGGACCAGCAAGACTGGCAAGTAACG...TTTTGCTTCCCATGAAGCAACCTTCACATAACTATTACTATTATGACCTCTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS TCA 90 bp CAAAACTATGATGGTAAGCTTTCAACAGCTCTCTGTCTTCTGCACTaGGGTCATTCCCATTTGTCTGAACCAAGGAACTTTCATCTAGAT +
Preference number: 5 (lower is better)
Translates to: QNYDGKLSTALCLLH*GHSHLSEPRNFHLD
Trigger: ATCTAGATGAAAGTTCCTTGGTTCAGACAAATGGGAATGACCTCAGTGCAGAAGACAGAGAGCTGTTGAAAGCTTACCATCATAGTTTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS CCA 90 bp TTCTTTTCCTTTGGCCCTGTCAATATTACATTCTCTCTGTCCACGTaGACTAAATTAGGATACATGCCTGCTACCAATGCAGCTTTAACA +
Preference number: 5 (lower is better)
Translates to: FFSFGPVNITFSLST*TKLGYMPATNAALT
Trigger: TGTTAAAGCTGCATTGGTAGCAGGCATGTATCCTAATTTAGTCCACGTGGACAGAGAGAATGTAATATTGACAGGGCCAAAGGAAAAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR CAA 90 bp ACAACACTTCATCAAGGTTTTCAGAAAATCAGTGCATTCTGTAGCTACAACAGGTTGTCAGCAAACCGCTaGTCATCAAAGAGGATACGA +
Preference number: 5 (lower is better)
Translates to: TTLHQGFQKISAFCSYNRLSANR*SSKRIR
Trigger: TCGTATCCTCTTTGATGACAAGCGGTTTGCTGACAA...CCTGTTGTAGCTACAGAATGCACTGATTTTCTGAAAACCTTGATGAAGTGTTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR CAA 90 bp AAGGTTTTCAGAAAATCAGTGCATTCTGTAGCTACAACAGGCATAACGCTCTTCACAAACACAACATCATaGACAGTGATGCTCGTCTCA +
Preference number: 5 (lower is better)
Translates to: KVFRKSVHSVATTGITLFTNTTS*TVMLVS
Trigger: TGAGACGAGCATCACTGTCAATGATGTTGTGTTTGT...GAAGAGCGTTATGCCTGTTGTAGCTACAGAATGCACTGATTTTCTGAAAACCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR CAA 90 bp TATATGAAGATGATGATTCTGAAGGAATACTCTATGCCTCAAATCCACTCATGGTTGGTGAAGGAGATTTaGATCCCTTCCCTGAGGATG +
Preference number: 5 (lower is better)
Translates to: YMKMMILKEYSMPQIHSWLVKEI*IPSLRM
Trigger: CATCCTCAGGGAAGGGATCAAAATCTCCTTCACCAA...CCATGAGTGGATTTGAGGCATAGAGTATTCCTTCAGAATCATCATCTTCATATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR CAA 90 bp CAAAGAGGTCATAATAGTAATAGTTATGTGAAGGTTGCTTCATGGGAAGCAAAACAGGCATCCATCTCCTaGATTAACCATGGTTCAAGG +
Preference number: 5 (lower is better)
Translates to: QRGHNSNSYVKVASWEAKQASIS*INHGSR
Trigger: CCTTGAACCATGGTTAATCAAGGAGATGGATGCCTG...TTTTGCTTCCCATGAAGCAACCTTCACATAACTATTACTATTATGACCTCTTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR CAA 90 bp TATATGAAGATGATGATTCTGAAGGAATACTCTATGCCTCAAATCCACTCATGGACTGGGGCTAACAGCTaGGTATGTAAACAAAGTTCC +
Preference number: 5 (lower is better)
Translates to: YMKMMILKEYSMPQIHSWTGANS*VCKQSS
Trigger: GGAACTTTGTTTACATACCAAGCTGTTAGCCCCAGT...CCATGAGTGGATTTGAGGCATAGAGTATTCCTTCAGAATCATCATCTTCATATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR CAA 90 bp CAAAGAGGTCATAATAGTAATAGTTATGTGAAGGTTGCTTCATGGGAAGCAAAACCTTTTCACAGGAACTaGAGGAATGCCATTGTTGAG +
Preference number: 5 (lower is better)
Translates to: QRGHNSNSYVKVASWEAKPFHRN*RNAIVE
Trigger: CTCAACAATGGCATTCCTCAAGTTCCTGTGAAAAGG...TTTTGCTTCCCATGAAGCAACCTTCACATAACTATTACTATTATGACCTCTTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR CAA 90 bp AGAGAAAGTAGAAGAGTTCTCAAGACTTCATGCCAATCCATGATTTTCTATATCAAGCCATCCAGCCATTaGATGCTTTACTGTGGACAT +
Preference number: 5 (lower is better)
Translates to: RESRRVLKTSCQSMIFYIKPSSH*MLYCGH
Trigger: ATGTCCACAGTAAAGCATCAAATGGCTGGATGGCTT...GATATAGAAAATCATGGATTGGCATGAAGTCTTGAGAACTCTTCTACTTTCTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR CAA 90 bp TGCCTCAAATCCACTCATGGCATACAACACTTCATCAAGGTTTTCAGAAAATCACCAGATACCCTTCTGTaGAGAAATTTCAAGGTTTCT +
Preference number: 5 (lower is better)
Translates to: CLKSTHGIQHFIKVFRKSPDTLL*RNFKVS
Trigger: AGAAACCTTGAAATTTCTCAACAGAAGGGTATCTGG...TGATTTTCTGAAAACCTTGATGAAGTGTTGTATGCCATGAGTGGATTTGAGGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR CAA 90 bp AAGGTTTTCAGAAAATCAGTGCATTCTGTAGCTACAACAGGCATAACGCTCTTCGAAATGTCCAGATCCTaGAACAGAAAATACCAAGTA +
Preference number: 5 (lower is better)
Translates to: KVFRKSVHSVATTGITLFEMSRS*NRKYQV
Trigger: TACTTGGTATTTTCTGTTCAAGGATCTGGACATTTC...GAAGAGCGTTATGCCTGTTGTAGCTACAGAATGCACTGATTTTCTGAAAACCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS TCA 90 bp GTCTTCCCTGTATATATATCACTGGACAACTTCCAAAATATCTTATaGAGAGGTTCACATCCAAGGCAGCACTCGAAAGAATTAGTTTCA +
Preference number: 5 (lower is better)
Translates to: VFPVYISLDNFQNIL*RGSHPRQHSKELVS
Trigger: TGAAACTAATTCTTTCGAGTGCTGCCTTGGATGTGAACCTCTTCATAAGATATTTTGGAAGTTGTCCAGTGATATATATACAGGGAAGAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS TCA 90 bp TTGCACCAGCATCACAGCTATGGCAGATATTATATAGGAGATGCATaGTCAAATCCAAGTCTACTTTCTCATCATCAAAACTATGATGGT +
Preference number: 5 (lower is better)
Translates to: LHQHHSYGRYYIGDA*SNPSLLSHHQNYDG
Trigger: ACCATCATAGTTTTGATGATGAGAAAGTAGACTTGGATTTGATCATGCATCTCCTATATAATATCTGCCATAGCTGTGATGCTGGTGCAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR CAA 90 bp TGCCTCAAATCCACTCATGGCATACAACACTTCATCAAGGTTTTCAGAAAATCACAGTTAGGTATCTATTaGCTCCCTTTCCTTTACTTT +
Preference number: 5 (lower is better)
Translates to: CLKSTHGIQHFIKVFRKSQLGIY*LPFLYF
Trigger: AAAGTAAAGGAAAGGGAGCAAATAGATACCTAACTG...TGATTTTCTGAAAACCTTGATGAAGTGTTGTATGCCATGAGTGGATTTGAGGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS-3UTR CAA 90 bp AGAGAAAGTAGAAGAGTTCTCAAGACTTCATGCCAATCCATGATTTTCTATATCCTTTTCCTACTATTATaGGATCTCCAAGATGAAGCC +
Preference number: 5 (lower is better)
Translates to: RESRRVLKTSCQSMIFYILFLLL*DLQDEA
Trigger: GGCTTCATCTTGGAGATCCAATAATAGTAGGAAAAG...GATATAGAAAATCATGGATTGGCATGAAGTCTTGAGAACTCTTCTACTTTCTCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS-3UTR CAA 90 bp CAAAGAGGTCATAATAGTAATAGTTATGTGAAGGTTGCTTCATGGGAAGCAAAAGGATCTGATAACCAATaGTTTGACCAATTCTTTCTC +
Preference number: 5 (lower is better)
Translates to: QRGHNSNSYVKVASWEAKGSDNQ*FDQFFL
Trigger: GAGAAAGAATTGGTCAAACAATTGGTTATCAGATCC...TTTTGCTTCCCATGAAGCAACCTTCACATAACTATTACTATTATGACCTCTTTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS CCA 72 bp CTTGGCCCGGCCACCGCCTCCAGGACCACACGAAGCTaGGCCGCCGCCGCCACCGCCACCGCCGCCGCCACT +
Preference number: 6 (lower is better)
Translates to: LGPATASRTTRS*AAAATATAAAT
Trigger: AGTGGCGGCGGCGGTGGCGGTGGCGGCGGCGGCCCAGCTTCGTGTGGTCCTGGAGGCGGTGGCCGGGCCAAG
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS CAA 90 bp ACGGCGATCTTCACCTCCTCGTCGATACGAATGTCTTTGAGGCCCTaGGCCCGGCCACCGCCTCCAGGACCACACGAAGCTGGGCCGCCG +
Preference number: 6 (lower is better)
Translates to: TAIFTSSSIRMSLRP*ARPPPPGPHEAGPP
Trigger: CGGCGGCCCAGCTTCGTGTGGTCCTGGAGGCGGTGGCCGGGCCAAGGGCCTCAAAGACATTCGTATCGACGAGGAGGTGAAGATCGCCGT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS TCA 72 bp CGGCGATCTTCACCTCCTCGTCGATACGAATGTCTTTaGGGCCCTTGGCCCGGCCACCGCCTCCAGGACCAC +
Preference number: 6 (lower is better)
Translates to: RRSSPPRRYECL*GPWPGHRLQDH
Trigger: GTGGTCCTGGAGGCGGTGGCCGGGCCAAGGGCCTCAAAGACATTCGTATCGACGAGGAGGTGAAGATCGCCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS CAA 72 bp ACGGCGATCTTCACCTCCTCGTCGATACGAATGTCTTaGAGGCCCTTGGCCCGGCCACCGCCTCCAGGACCA +
Preference number: 6 (lower is better)
Translates to: TAIFTSSSIRMS*RPLARPPPPGP
Trigger: TGGTCCTGGAGGCGGTGGCCGGGCCAAGGGCCTCAAAGACATTCGTATCGACGAGGAGGTGAAGATCGCCGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS CAA 90 bp GCGATGTTGACGGCGATCTTCACCTCCTCGTCGATACGAATGTCTTaGAGGCCCTTGGCCCGGCCACCGCCTCCAGGACCACACGAAGCT +
Preference number: 6 (lower is better)
Translates to: AMLTAIFTSSSIRMS*RPLARPPPPGPHEA
Trigger: AGCTTCGTGTGGTCCTGGAGGCGGTGGCCGGGCCAAGGGCCTCAAAGACATTCGTATCGACGAGGAGGTGAAGATCGCCGTCAACATCGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS CAA 72 bp TTCACCTCCTCGTCGATACGAATGTCTTTGAGGCCCTaGGCCCGGCCACCGCCTCCAGGACCACACGAAGCT +
Preference number: 6 (lower is better)
Translates to: FTSSSIRMSLRP*ARPPPPGPHEA
Trigger: AGCTTCGTGTGGTCCTGGAGGCGGTGGCCGGGCCAAGGGCCTCAAAGACATTCGTATCGACGAGGAGGTGAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS TCA 72 bp TCTGGTCACCGTAGCGGAAGCGCTCCAGAGCGATGTTaGCGGCGATCTTCACCTCCTCGTCGATACGAATGT +
Preference number: 6 (lower is better)
Translates to: SGHRSGSAPERC*RRSSPPRRYEC
Trigger: ACATTCGTATCGACGAGGAGGTGAAGATCGCCGTCAACATCGCTCTGGAGCGCTTCCGCTACGGTGACCAGA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS GCA 72 bp AGTCCCTGCAGTGAAGCGTTTCCTACAAAGCATAGCTaGCCGTTTCTGAGAGGCCTGGGTAGGCAGGACAAA +
Preference number: 6 (lower is better)
Translates to: SPCSEAFPTKHS*PFLRGLGRQDK
Trigger: TTTGTCCTGCCTACCCAGGCCTCTCAGAAACGGGCAGCTATGCTTTGTAGGAAACGCTTCACTGCAGGGACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS GCA 72 bp TGCTCTCAGAAGTGCCATGTGGTCACTGAAAGTCCCTaGAGTGAAGCGTTTCCTACAAAGCATAGCTGCCCG +
Preference number: 6 (lower is better)
Translates to: CSQKCHVVTESP*SEAFPTKHSCP
Trigger: CGGGCAGCTATGCTTTGTAGGAAACGCTTCACTGCAGGGACTTTCAGTGACCACATGGCACTTCTGAGAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS GCA 72 bp CTTTTCACAAAAGGCTCGCTCCCACCCATCACTTCGTaGTTTCTGCCATGCCTGAAATGCTCTCAGAAGTGC +
Preference number: 6 (lower is better)
Translates to: LFTKGSLPPITS*FLPCLKCSQKC
Trigger: GCACTTCTGAGAGCATTTCAGGCATGGCAGAAAGCACGAAGTGATGGGTGGGAGCGAGCCTTTTGTGAAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS GCA 72 bp GGTCATTTCATCATAAATAAGCCAATCTGTGGGCAATaGCTGAATCGCTGCAGCCTGACCATTGGCGGGAGG +
Preference number: 6 (lower is better)
Translates to: GHFIINKPICGQ*LNRCSLTIGGR
Trigger: CCTCCCGCCAATGGTCAGGCTGCAGCGATTCAGGCATTGCCCACAGATTGGCTTATTTATGATGAAATGACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS CCA 72 bp AAAGGAAGTTCTTCTGAAGACATGGGTCTTGGCCGCTaGCCAATTCCAGATGGCTGCTGTAAACCTGCAGAC +
Preference number: 6 (lower is better)
Translates to: KGSSSEDMGLGR*PIPDGCCKPAD
Trigger: GTCTGCAGGTTTACAGCAGCCATCTGGAATTGGCCAGCGGCCAAGACCCATGTCTTCAGAAGAACTTCCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS TCA 72 bp TTGGGAATACCATCCGCTCTAAAGGATGAAGGTTCCTaGAGAGCGTTACTTGCCAGTCTTGCTGGTCCACAG +
Preference number: 6 (lower is better)
Translates to: LGIPSALKDEGS*RALLASLAGPQ
Trigger: CTGTGGACCAGCAAGACTGGCAAGTAACGCTCTTCAGGAACCTTCATCCTTTAGAGCGGATGGTATTCCCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS GCA 72 bp CGTAAAGCCCCGTCCTGCAGCAACCATCAGAGCTGTTaGACTGGTCTCACTATGCCTATAATCAACACTAAC +
Preference number: 6 (lower is better)
Translates to: RKAPSCSNHQSC*TGLTMPIINTN
Trigger: GTTAGTGTTGATTATAGGCATAGTGAGACCAGTGCAACAGCTCTGATGGTTGCTGCAGGACGGGGCTTTACG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS GCA 72 bp GCTTTACTGTGGACATTGGCTCCCATACTAATTAACTaGTCTACTTGGCTCGTAAAGCCCCGTCCTGCAGCA +
Preference number: 6 (lower is better)
Translates to: ALLWTLAPILIN*STWLVKPRPAA
Trigger: TGCTGCAGGACGGGGCTTTACGAGCCAAGTAGAGCAGTTAATTAGTATGGGAGCCAATGTCCACAGTAAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS CCA 72 bp TGGACATTGGCTCCCATACTAATTAACTGCTCTACTTaGCTCGTAAAGCCCCGTCCTGCAGCAACCATCAGA +
Preference number: 6 (lower is better)
Translates to: WTLAPILINCST*LVKPRPAATIR
Trigger: TCTGATGGTTGCTGCAGGACGGGGCTTTACGAGCCAAGTAGAGCAGTTAATTAGTATGGGAGCCAATGTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS TCA 72 bp CTCCCCTTTTCACAGGAACTTGAGGAATGCCATTGTTaGGTCGCCCGCTTGTCTTGCTCATTTCTCGGTTTT +
Preference number: 6 (lower is better)
Translates to: LPFSQELEECHC*VARLSCSFLGF
Trigger: AAAACCGAGAAATGAGCAAGACAAGCGGGCGACTCAACAATGGCATTCCTCAAGTTCCTGTGAAAAGGGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS TCA 72 bp GAGTCAAATTCAGACTCTCCCCTTTTCACAGGAACTTaGGGAATGCCATTGTTGAGTCGCCCGCTTGTCTTG +
Preference number: 6 (lower is better)
Translates to: ESNSDSPLFTGT*GMPLLSRPLVL
Trigger: CAAGACAAGCGGGCGACTCAACAATGGCATTCCTCAAGTTCCTGTGAAAAGGGGAGAGTCTGAATTTGACTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS CAA 72 bp CAACTCTTTCAGCCACAGCAATCGCTGCTAGTCGTCTaGGTTGAGTACAAAATATTCGGCAGGGGATGCCAT +
Preference number: 6 (lower is better)
Translates to: QLFQPQQSLLVV*VEYKIFGRGCH
Trigger: ATGGCATCCCCTGCCGAATATTTTGTACTCAACCAAGACGACTAGCAGCGATTGCTGTGGCTGAAAGAGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS CAA 90 bp GCCCAATCTAAAGCCATCCAGCCATTTGATGCTTTACTGTGGACATaGGCTCCCATACTAATTAACTGCTCTACTTGGCTCGTAAAGCCC +
Preference number: 6 (lower is better)
Translates to: AQSKAIQPFDALLWT*APILINCSTWLVKP
Trigger: GGGCTTTACGAGCCAAGTAGAGCAGTTAATTAGTATGGGAGCCAATGTCCACAGTAAAGCATCAAATGGCTGGATGGCTTTAGATTGGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS TCA 72 bp TTCCCAAGATGCGGTTCTACTGGCAAATCAGCCAAATaGTACCCAAGTTCAGTCAGATCTTCCCATGCATCC +
Preference number: 6 (lower is better)
Translates to: FPRCGSTGKSAK*YPSSVRSSHAS
Trigger: GGATGCATGGGAAGATCTGACTGAACTTGGGTATCATTTGGCTGATTTGCCAGTAGAACCGCATCTTGGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS TCA 72 bp ACAGCTATAATTGCTCGTATGGTAGCTTCATCGACTTaGGACCAAGGTTTAGATGGCGCTCTCATTCGGCGT +
Preference number: 6 (lower is better)
Translates to: TAIIARMVASST*DQGLDGALIRR
Trigger: ACGCCGAATGAGAGCGCCATCTAAACCTTGGTCTCAAGTCGATGAAGCTACCATACGAGCAATTATAGCTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS GCA 72 bp ATAAATAAGCCAATCTGTGGGCAATGCCTGAATCGCTaGAGCCTGACCATTGGCGGGAGGAATCTTTTTGTA +
Preference number: 6 (lower is better)
Translates to: INKPICGQCLNR*SLTIGGRNLFV
Trigger: TACAAAAAGATTCCTCCCGCCAATGGTCAGGCTGCAGCGATTCAGGCATTGCCCACAGATTGGCTTATTTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS CCA 72 bp TGCACACAGGACCATTTTCCCAAGATGCGGTTCTACTaGCAAATCAGCCAAATGATACCCAAGTTCAGTCAG +
Preference number: 6 (lower is better)
Translates to: CTQDHFPKMRFY*QISQMIPKFSQ
Trigger: CTGACTGAACTTGGGTATCATTTGGCTGATTTGCCAGTAGAACCGCATCTTGGGAAAATGGTCCTGTGTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS CAA 72 bp GTAGTTCTGTCTTCCATCTCACTGTCACTGCTGTCATaGGGAATACCATCCGCTCTAAAGGATGAAGGTTCC +
Preference number: 6 (lower is better)
Translates to: VVLSSISLSLLS*GIPSALKDEGS
Trigger: GGAACCTTCATCCTTTAGAGCGGATGGTATTCCCAATGACAGCAGTGACAGTGAGATGGAAGACAGAACTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS CAA 72 bp AACAGCTATAATTGCTCGTATGGTAGCTTCATCGACTaGAGACCAAGGTTTAGATGGCGCTCTCATTCGGCG +
Preference number: 6 (lower is better)
Translates to: NSYNCSYGSFID*RPRFRWRSHSA
Trigger: CGCCGAATGAGAGCGCCATCTAAACCTTGGTCTCAAGTCGATGAAGCTACCATACGAGCAATTATAGCTGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS TCA 72 bp TCCACAGAACACCAGGACAGTAACAGGTGTCACTGCTaGACAACATCTGATATTAGCAATTCGATGGGCTCT +
Preference number: 6 (lower is better)
Translates to: STEHQDSNRCHC*TTSDISNSMGS
Trigger: AGAGCCCATCGAATTGCTAATATCAGATGTTGTTCAGCAGTGACACCTGTTACTGTCCTGGTGTTCTGTGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS TCA 72 bp TCATTCGGCGTAAAAACAAACTATGCCACTTCTGTCTaGGCTGTAGCAATAAACTGGCAGCCTCTGGCTCTA +
Preference number: 6 (lower is better)
Translates to: SFGVKTNYATSV*AVAINWQPLAL
Trigger: TAGAGCCAGAGGCTGCCAGTTTATTGCTACAGCTCAGACAGAAGTGGCATAGTTTGTTTTTACGCCGAATGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS CAA 72 bp AAGTCGGCAATGGTGCAGTTAACTGGGGCTAACAGCTaGGTATGTAAACAAAGTTCCTGCAATGGCATTCTC +
Preference number: 6 (lower is better)
Translates to: KSAMVQLTGANS*VCKQSSCNGIL
Trigger: GAGAATGCCATTGCAGGAACTTTGTTTACATACCAAGCTGTTAGCCCCAGTTAACTGCACCATTGCCGACTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS CAA 72 bp AGCTGTAGCAATAAACTGGCAGCCTCTGGCTCTAGTTaGAAGTTAAGCCATTCATCAAGCTTCAAAGCAGCC +
Preference number: 6 (lower is better)
Translates to: SCSNKLAASGSS*KLSHSSSFKAA
Trigger: GGCTGCTTTGAAGCTTGATGAATGGCTTAACTTCAAACTAGAGCCAGAGGCTGCCAGTTTATTGCTACAGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS CAA 90 bp TTCTGTCTGAGCTGTAGCAATAAACTGGCAGCCTCTGGCTCTAGTTaGAAGTTAAGCCATTCATCAAGCTTCAAAGCAGCCAAATTGGCA +
Preference number: 6 (lower is better)
Translates to: FCLSCSNKLAASGSS*KLSHSSSFKAAKLA
Trigger: TGCCAATTTGGCTGCTTTGAAGCTTGATGAATGGCTTAACTTCAAACTAGAGCCAGAGGCTGCCAGTTTATTGCTACAGCTCAGACAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS TCA 72 bp CCACCTCGTGCTCTAACAAAACCTGATGCTCTAAGCTaGCCAAGCAACTGTGTTCTCATGCCTATAATGATT +
Preference number: 6 (lower is better)
Translates to: PPRALTKPDALS*PSNCVLMPIMI
Trigger: AATCATTATAGGCATGAGAACACAGTTGCTTGGTCAGCTTAGAGCATCAGGTTTTGTTAGAGCACGAGGTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS GCA 72 bp TCCCATGCATCCATTGCATCTATTGTCTTAAGCATCTaGACAGCATTTCTCACAATTAAAGCTGGAGGCGGT +
Preference number: 6 (lower is better)
Translates to: SHASIASIVLSI*TAFLTIKAGGG
Trigger: ACCGCCTCCAGCTTTAATTGTGAGAAATGCTGTGCAGATGCTTAAGACAATAGATGCAATGGATGCATGGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS CAA 72 bp AAAGCCATCCAGCCATTTGATGCTTTACTGTGGACATaGGCTCCCATACTAATTAACTGCTCTACTTGGCTC +
Preference number: 6 (lower is better)
Translates to: KAIQPFDALLWT*APILINCSTWL
Trigger: GAGCCAAGTAGAGCAGTTAATTAGTATGGGAGCCAATGTCCACAGTAAAGCATCAAATGGCTGGATGGCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS TCA 72 bp GCAGCCATATGTCAGAAAGGCAGGCATCCATCTCCTTaGTTAACCATGGTTCAAGGCAATTCACATCTTTTT +
Preference number: 6 (lower is better)
Translates to: AAICQKGRHPSP*LTMVQGNSHLF
Trigger: AAAAAGATGTGAATTGCCTTGAACCATGGTTAATCAAGGAGATGGATGCCTGCCTTTCTGACATATGGCTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS GCA 72 bp AGCCAAATGATACCCAAGTTCAGTCAGATCTTCCCATaGATCCATTGCATCTATTGTCTTAAGCATCTGCAC +
Preference number: 6 (lower is better)
Translates to: SQMIPKFSQIFP*IHCIYCLKHLH
Trigger: GTGCAGATGCTTAAGACAATAGATGCAATGGATGCATGGGAAGATCTGACTGAACTTGGGTATCATTTGGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS CCA 72 bp TTTGGCCCTGTCAATATTACATTCTCTCTGTCCACGTaGACTAAATTAGGATACATGCCTGCTACCAATGCA +
Preference number: 6 (lower is better)
Translates to: FGPVNITFSLST*TKLGYMPATNA
Trigger: TGCATTGGTAGCAGGCATGTATCCTAATTTAGTCCACGTGGACAGAGAGAATGTAATATTGACAGGGCCAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS CAA 72 bp TGCAGCCATATGTCAGAAAGGCAGGCATCCATCTCCTaGATTAACCATGGTTCAAGGCAATTCACATCTTTT +
Preference number: 6 (lower is better)
Translates to: CSHMSERQASIS*INHGSRQFTSF
Trigger: AAAAGATGTGAATTGCCTTGAACCATGGTTAATCAAGGAGATGGATGCCTGCCTTTCTGACATATGGCTGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS CAA 72 bp GAACTGAAGTGGGATGAAAGCGTACTTTCTTTTCCTTaGGCCCTGTCAATATTACATTCTCTCTGTCCACGT +
Preference number: 6 (lower is better)
Translates to: ELKWDESVLSFP*ALSILHSLCPR
Trigger: ACGTGGACAGAGAGAATGTAATATTGACAGGGCCAAAGGAAAAGAAAGTACGCTTTCATCCCACTTCAGTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS CAA 72 bp AAGTTAAGCCATTCATCAAGCTTCAAAGCAGCCAAATaGGCAGTAGTTCTGTCTTCCATCTCACTGTCACTG +
Preference number: 6 (lower is better)
Translates to: KLSHSSSFKAAK*AVVLSSISLSL
Trigger: CAGTGACAGTGAGATGGAAGACAGAACTACTGCCAATTTGGCTGCTTTGAAGCTTGATGAATGGCTTAACTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS CAA 90 bp ACATCTTTATGCAGCCATATGTCAGAAAGGCAGGCATCCATCTCCTaGATTAACCATGGTTCAAGGCAATTCACATCTTTTTCTGTCAGC +
Preference number: 6 (lower is better)
Translates to: TSLCSHMSERQASIS*INHGSRQFTSFSVS
Trigger: GCTGACAGAAAAAGATGTGAATTGCCTTGAACCATGGTTAATCAAGGAGATGGATGCCTGCCTTTCTGACATATGGCTGCATAAAGATGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS CAA 90 bp TCTAGTTTGAAGTTAAGCCATTCATCAAGCTTCAAAGCAGCCAAATaGGCAGTAGTTCTGTCTTCCATCTCACTGTCACTGCTGTCATTG +
Preference number: 6 (lower is better)
Translates to: SSLKLSHSSSFKAAK*AVVLSSISLSLLSL
Trigger: CAATGACAGCAGTGACAGTGAGATGGAAGACAGAACTACTGCCAATTTGGCTGCTTTGAAGCTTGATGAATGGCTTAACTTCAAACTAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS TCA 72 bp GGGAGGAATCTTTTTGTATTGAGGTTGACTGAGAACTaGAGTGGGATGAAAGCGTACTTTCTTTTCCTTTGG +
Preference number: 6 (lower is better)
Translates to: GRNLFVLRLTEN*SGMKAYFLFLW
Trigger: CCAAAGGAAAAGAAAGTACGCTTTCATCCCACTTCAGTTCTCAGTCAACCTCAATACAAAAAGATTCCTCCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS TCA 72 bp CATTGGCGGGAGGAATCTTTTTGTATTGAGGTTGACTaGGAACTGAAGTGGGATGAAAGCGTACTTTCTTTT +
Preference number: 6 (lower is better)
Translates to: HWREESFCIEVD*ELKWDESVLSF
Trigger: AAAAGAAAGTACGCTTTCATCCCACTTCAGTTCTCAGTCAACCTCAATACAAAAAGATTCCTCCCGCCAATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS GCA 72 bp ATACCCAAGTTCAGTCAGATCTTCCCATGCATCCATTaGATCTATTGTCTTAAGCATCTGCACAGCATTTCT +
Preference number: 6 (lower is better)
Translates to: IPKFSQIFPCIH*IYCLKHLHSIS
Trigger: AGAAATGCTGTGCAGATGCTTAAGACAATAGATGCAATGGATGCATGGGAAGATCTGACTGAACTTGGGTAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS CAA 72 bp GCGAAACCCTGCTTTCTAATCGGATCTGATAACCAATaGTTTGACCAATTCTTTCTCTTCTCTCTGCAGCAA +
Preference number: 6 (lower is better)
Translates to: AKPCFLIGSDNQ*FDQFFLFSLQQ
Trigger: TTGCTGCAGAGAGAAGAGAAAGAATTGGTCAAACAATTGGTTATCAGATCCGATTAGAAAGCAGGGTTTCGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS CCA 72 bp CAAACTCAGTGTCAGCTGTACTTTTCCTACTATTATTaGATCTCCAAGATGAAGCCAAAGGAAGTTCTTCTG +
Preference number: 6 (lower is better)
Translates to: QTQCQLYFSYYY*ISKMKPKEVLL
Trigger: CAGAAGAACTTCCTTTGGCTTCATCTTGGAGATCCAATAATAGTAGGAAAAGTACAGCTGACACTGAGTTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS CAA 72 bp GCAAACTCAGTGTCAGCTGTACTTTTCCTACTATTATaGGATCTCCAAGATGAAGCCAAAGGAAGTTCTTCT +
Preference number: 6 (lower is better)
Translates to: ANSVSAVLFLLL*DLQDEAKGSSS
Trigger: AGAAGAACTTCCTTTGGCTTCATCTTGGAGATCCAATAATAGTAGGAAAAGTACAGCTGACACTGAGTTTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037763.11
ENSMUST00000201507.2
CDS TCA 72 bp GTATATATATCACTGGACAACTTCCAAAATATCTTATaGAGAGGTTCACATCCAAGGCAGCACTCGAAAGAA +
Preference number: 6 (lower is better)
Translates to: VYISLDNFQNIL*RGSHPRQHSKE
Trigger: TTCTTTCGAGTGCTGCCTTGGATGTGAACCTCTTCATAAGATATTTTGGAAGTTGTCCAGTGATATATATAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11
CDS TCA 72 bp CATCACAGCTATGGCAGATATTATATAGGAGATGCATaGTCAAATCCAAGTCTACTTTCTCATCATCAAAAC +
Preference number: 6 (lower is better)
Translates to: HHSYGRYYIGDA*SNPSLLSHHQN
Trigger: GTTTTGATGATGAGAAAGTAGACTTGGATTTGATCATGCATCTCCTATATAATATCTGCCATAGCTGTGATG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037763.11