Pregenerated sensors for YRDC (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028889

Ensembl transcript IDs: ENSMUST00000102628.11

Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR CCA 90 bp	CTAGACTGCATTAGTGCTTCTGGCTGGTTTGACATCAAATGTCACTGTTCCCCACCTGCAGCTTCTGGCTaGCCTACAGGATTCAGAGCC	+
Preference number: 2 (lower is better) Translates to: LDCISASGWFDIKCHCSPPAASG*PTGFRA Trigger: GGCTCTGAATCCTGTAGGCCAGCCAGAAGCTGCAGG...TGGGGAACAGTGACATTTGATGTCAAACCAGCCAGAAGCACTAATGCAGTCTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102628.11
3UTR-3UTR GCA 90 bp	GCTGGTTTGACATCAAATGTCACTGTTCCCCAGAAAGCAGCTTTTAATGCATTCGGACAAGGCTCACCCTaGAGCTTCTGGCTGGCCTAC	+
Preference number: 2 (lower is better) Translates to: AGLTSNVTVPQKAAFNAFGQGSP*SFWLAY Trigger: GTAGGCCAGCCAGAAGCTGCAGGGTGAGCCTTGTCC...GAATGCATTAAAAGCTGCTTTCTGGGGAACAGTGACATTTGATGTCAAACCAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102628.11
3UTR-3UTR CCA 90 bp	CTAGACTGCATTAGTGCTTCTGGCTGGTTTGACATCAAATGTCACTGTTCCCCATCACCCTGCAGCTTCTaGCTGGCCTACAGGATTCAG	+
Preference number: 2 (lower is better) Translates to: LDCISASGWFDIKCHCSPSPCSF*LAYRIQ Trigger: CTGAATCCTGTAGGCCAGCCAGAAGCTGCAGGGTGA...TGGGGAACAGTGACATTTGATGTCAAACCAGCCAGAAGCACTAATGCAGTCTAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102628.11
3UTR CCA 72 bp	AAGACTTCTATTCTAGACTGCATTAGTGCTTCTGGCTaGTTTGACATCAAATGTCACTGTTCCCCAGAAAGC	+
Preference number: 3 (lower is better) Translates to: KTSILDCISASG*FDIKCHCSPES Trigger: GCTTTCTGGGGAACAGTGACATTTGATGTCAAACCAGCCAGAAGCACTAATGCAGTCTAGAATAGAAGTCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102628.11
CDS-3UTR GCA 90 bp	CTAGACTGCATTAGTGCTTCTGGCTGGTTTGACATCAAATGTCACTGTTCCCCATCAGGGCCGCCGAGCTaGTCGCCGAGCAGGCCAGGC	+
Preference number: 4 (lower is better) Translates to: LDCISASGWFDIKCHCSPSGPPS*SPSRPG Trigger: GCCTGGCCTGCTCGGCGAGCAGCTCGGCGGCCCTGA...TGGGGAACAGTGACATTTGATGTCAAACCAGCCAGAAGCACTAATGCAGTCTAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102628.11
CDS-3UTR CCA 90 bp	GCTGGTTTGACATCAAATGTCACTGTTCCCCAGAAAGCAGCTTTTAATGCATTCCAGGGTCACAGGGCCTaGGAACAGGTCTTCCAGGAG	+
Preference number: 4 (lower is better) Translates to: AGLTSNVTVPQKAAFNAFQGHRA*EQVFQE Trigger: CTCCTGGAAGACCTGTTCCCAGGCCCTGTGACCCTG...GAATGCATTAAAAGCTGCTTTCTGGGGAACAGTGACATTTGATGTCAAACCAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102628.11
CDS-3UTR TCA 90 bp	CTAGACTGCATTAGTGCTTCTGGCTGGTTTGACATCAAATGTCACTGTTCCCCAATGACAAGGGACAAATaGGGCCAGAGGTCTTGGAAC	+
Preference number: 4 (lower is better) Translates to: LDCISASGWFDIKCHCSPMTRDK*GQRSWN Trigger: GTTCCAAGACCTCTGGCCTCATTTGTCCCTTGTCAT...TGGGGAACAGTGACATTTGATGTCAAACCAGCCAGAAGCACTAATGCAGTCTAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102628.11
CDS-3UTR CCA 90 bp	ACTCTAAGAACATCCTTCCCTCCATTTAATTCTTGGCTGACAAATAAATGTACAGGTCCCCCAAACATCTaGGCCAAGTCCAGCATGAAG	+
Preference number: 4 (lower is better) Translates to: TLRTSFPPFNSWLTNKCTGPPNI*AKSSMK Trigger: CTTCATGCTGGACTTGGCCCAGATGTTTGGGGGACC...TGTACATTTATTTGTCAGCCAAGAATTAAATGGAGGGAAGGATGTTCTTAGAGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102628.11
CDS-3UTR CCA 90 bp	ACTCTAAGAACATCCTTCCCTCCATTTAATTCTTGGCTGACAAATAAATGTACAACTAGTGAGTGCAAGTaGTCCCCCAAACATCTGGGC	+
Preference number: 4 (lower is better) Translates to: TLRTSFPPFNSWLTNKCTTSECK*SPKHLG Trigger: GCCCAGATGTTTGGGGGACCACTTGCACTCACTAGT...TGTACATTTATTTGTCAGCCAAGAATTAAATGGAGGGAAGGATGTTCTTAGAGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102628.11
CDS-3UTR GCA 90 bp	ACTCTAAGAACATCCTTCCCTCCATTTAATTCTTGGCTGACAAATAAATGTACAGTTGGCACTAGTGAGTaGAAGTGGTCCCCCAAACAT	+
Preference number: 4 (lower is better) Translates to: TLRTSFPPFNSWLTNKCTVGTSE*KWSPKH Trigger: ATGTTTGGGGGACCACTTGCACTCACTAGTGCCAAC...TGTACATTTATTTGTCAGCCAAGAATTAAATGGAGGGAAGGATGTTCTTAGAGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102628.11
CDS-3UTR CCA 90 bp	ACTCTAAGAACATCCTTCCCTCCATTTAATTCTTGGCTGACAAATAAATGTACAAGCCCATATTTCTGCTaGAGGATCGATGTAGTGTTT	+
Preference number: 4 (lower is better) Translates to: TLRTSFPPFNSWLTNKCTSPYFC*RIDVVF Trigger: AAACACTACATCGATCCTCCAGCAGAAATATGGGCT...TGTACATTTATTTGTCAGCCAAGAATTAAATGGAGGGAAGGATGTTCTTAGAGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102628.11
CDS TCA 90 bp	CGCGGCCCAGGCACACGGCCAGCGGCTTGGCCTCGCTGCGGCCTTTaGGGCGGTACACGCAACTCAGGGCCGCCGAGCTGCTCGCCGAGC	+
Preference number: 5 (lower is better) Translates to: RGPGTRPAAWPRCGL*GGTRNSGPPSCSPS Trigger: GCTCGGCGAGCAGCTCGGCGGCCCTGAGTTGCGTGTACCGCCTCAAAGGCCGCAGCGAGGCCAAGCCGCTGGCCGTGTGCCTGGGCCGCG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102628.11
CDS-3UTR CAA 90 bp	CTAGACTGCATTAGTGCTTCTGGCTGGTTTGACATCAAATGTCACTGTTCCCCACACACGGCCAGCGGCTaGGCCTCGCTGCGGCCTTTG	+
Preference number: 5 (lower is better) Translates to: LDCISASGWFDIKCHCSPHTASG*ASLRPL Trigger: CAAAGGCCGCAGCGAGGCCAAGCCGCTGGCCGTGTG...TGGGGAACAGTGACATTTGATGTCAAACCAGCCAGAAGCACTAATGCAGTCTAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102628.11
CDS-3UTR CAA 90 bp	CTAGACTGCATTAGTGCTTCTGGCTGGTTTGACATCAAATGTCACTGTTCCCCAGGGTTCAGGTCTTTGTaGAGCTCCTCGGAGCGCTCC	+
Preference number: 5 (lower is better) Translates to: LDCISASGWFDIKCHCSPGFRSL*SSSERS Trigger: GGAGCGCTCCGAGGAGCTCAACAAAGACCTGAACCC...TGGGGAACAGTGACATTTGATGTCAAACCAGCCAGAAGCACTAATGCAGTCTAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102628.11
CDS-3UTR CAA 90 bp	CTAGACTGCATTAGTGCTTCTGGCTGGTTTGACATCAAATGTCACTGTTCCCCAATGAGGCCAGAGGTCTaGGAACTCCTCAACACTCAG	+
Preference number: 5 (lower is better) Translates to: LDCISASGWFDIKCHCSPMRPEV*ELLNTQ Trigger: CTGAGTGTTGAGGAGTTCCAAGACCTCTGGCCTCAT...TGGGGAACAGTGACATTTGATGTCAAACCAGCCAGAAGCACTAATGCAGTCTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102628.11
CDS-3UTR CAA 90 bp	ACTCTAAGAACATCCTTCCCTCCATTTAATTCTTGGCTGACAAATAAATGTACAGCCTCGCTGCGGCCTTaGAGGCGGTACACGCAACTC	+
Preference number: 5 (lower is better) Translates to: TLRTSFPPFNSWLTNKCTASLRP*RRYTQL Trigger: GAGTTGCGTGTACCGCCTCAAAGGCCGCAGCGAGGC...TGTACATTTATTTGTCAGCCAAGAATTAAATGGAGGGAAGGATGTTCTTAGAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102628.11
CDS TCA 72 bp	GGCACACGGCCAGCGGCTTGGCCTCGCTGCGGCCTTTaGGGCGGTACACGCAACTCAGGGCCGCCGAGCTGC	+
Preference number: 6 (lower is better) Translates to: GTRPAAWPRCGL*GGTRNSGPPSC Trigger: GCAGCTCGGCGGCCCTGAGTTGCGTGTACCGCCTCAAAGGCCGCAGCGAGGCCAAGCCGCTGGCCGTGTGCC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102628.11
CDS CCA 72 bp	CAGGACCCCTGTGAAGGGAGCAGCCCATATTTCTGCTaGAGGATCGATGTAGTGTTTTCCAGGGCACAGCCT	+
Preference number: 6 (lower is better) Translates to: QDPCEGSSPYFC*RIDVVFSRAQP Trigger: AGGCTGTGCCCTGGAAAACACTACATCGATCCTCCAGCAGAAATATGGGCTGCTCCCTTCACAGGGGTCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102628.11
CDS GCA 72 bp	GAACAGGACCCCTGTGAAGGGAGCAGCCCATATTTCTaGTGGAGGATCGATGTAGTGTTTTCCAGGGCACAG	+
Preference number: 6 (lower is better) Translates to: EQDPCEGSSPYF*WRIDVVFSRAQ Trigger: CTGTGCCCTGGAAAACACTACATCGATCCTCCAGCAGAAATATGGGCTGCTCCCTTCACAGGGGTCCTGTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102628.11